Pregenerated sensors for SCGB1C1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038801Ensembl transcript IDs: ENSMUST00000035300.7
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | AGTGATCGCGGCACATCCATGGTCGCTGTAGGGCTGGTCCTGTCGCTCATGGAATTTGCAGGAATTCCATaGAAAACTCATTGTCATCCT | + |
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Preference number: 4 (lower is better) Translates to: SDRGTSMVAVGLVLSLMEFAGIP*KTHCHP Trigger: AGGATGACAATGAGTTTTTCATGGAATTCCTGCAAA...TTCCATGAGCGACAGGACCAGCCCTACAGCGACCATGGATGTGCCGCGATCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035300.7 |
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| CDS-3UTR CAA 90 bp | GATCGCGGCACATCCATGGTCGCTGTAGGGCTGGTCCTGTCGCTCATGGAAGTCGACTTGGCCATGTCATaGACATTGTACTTGCCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: DRGTSMVAVGLVLSLMEVDLAMS*TLYLPR Trigger: CCTGGGCAAGTACAATGTCAATGACATGGCCAAGTC...GACTTCCATGAGCGACAGGACCAGCCCTACAGCGACCATGGATGTGCCGCGATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035300.7 |
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| CDS-3UTR CAA 90 bp | AGTGATCGCGGCACATCCATGGTCGCTGTAGGGCTGGTCCTGTCGCTCATGGAAACTTGCACCAGCAGCTaGACCAGTTGCTCCTTATGC | + |
|
Preference number: 5 (lower is better) Translates to: SDRGTSMVAVGLVLSLMETCTSS*TSCSLC Trigger: GCATAAGGAGCAACTGGTCAAGCTGCTGGTGCAAGT...TTCCATGAGCGACAGGACCAGCCCTACAGCGACCATGGATGTGCCGCGATCACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035300.7 |
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| CDS-3UTR CAA 90 bp | AGTGATCGCGGCACATCCATGGTCGCTGTAGGGCTGGTCCTGTCGCTCATGGAATCCATGAAAAACTCATaGTCATCCTCTGCTCTAGTC | + |
|
Preference number: 5 (lower is better) Translates to: SDRGTSMVAVGLVLSLMESMKNS*SSSALV Trigger: GACTAGAGCAGAGGATGACAATGAGTTTTTCATGGA...TTCCATGAGCGACAGGACCAGCCCTACAGCGACCATGGATGTGCCGCGATCACT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035300.7 |
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| CDS TCA 72 bp | TGTCCTCTTGAGCATCTAGCACTTGCACCAGCAGCTTaGCCAGTTGCTCCTTATGCACAGGCTGTAGTTCAT | + |
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Preference number: 6 (lower is better) Translates to: CPLEHLALAPAA*PVAPYAQAVVH Trigger: ATGAACTACAGCCTGTGCATAAGGAGCAACTGGTCAAGCTGCTGGTGCAAGTGCTAGATGCTCAAGAGGACA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035300.7 |
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