Pregenerated sensors for SCGB1B7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078759Ensembl transcript IDs: ENSMUST00000108097.4
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATTGCAAGGTTTTATTGTTGGATTCCTGTTCTTAGACACCTGGAGTaGAGGACTATAATCTGCTGCATCTATGCAGGTAGGCAGGCAAGT | + |
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Preference number: 1 (lower is better) Translates to: IARFYCWIPVLRHLE*RTIICCIYAGRQAS Trigger: ACTTGCCTGCCTACCTGCATAGATGCAGCAGATTATAGTCCTTCACTCCAGGTGTCTAAGAACAGGAATCCAACAATAAAACCTTGCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108097.4 |
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| 3UTR TCA 72 bp | TTTTATTGTTGGATTCCTGTTCTTAGACACCTGGAGTaGAGGACTATAATCTGCTGCATCTATGCAGGTAGG | + |
|
Preference number: 3 (lower is better) Translates to: FYCWIPVLRHLE*RTIICCIYAGR Trigger: CCTACCTGCATAGATGCAGCAGATTATAGTCCTTCACTCCAGGTGTCTAAGAACAGGAATCCAACAATAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108097.4 |
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| CDS-3UTR TCA 90 bp | ACTATAATCTGCTGCATCTATGCAGGTAGGCAGGCAAGTGGCTTCCTTGAGACCGCCACAATCTCCTCCTaGAGTCAGGAGGAGCAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: TIICCIYAGRQASGFLETATISS*SQEEQG Trigger: GCCCTGCTCCTCCTGACTTCAGGAGGAGATTGTGGC...GGTCTCAAGGAAGCCACTTGCCTGCCTACCTGCATAGATGCAGCAGATTATAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108097.4 |
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| CDS TCA 72 bp | CTCTTTTATAGCTGGGCAAATGCCACAATCTCCTCCTaGAGTCAGGAGGAGCAGGGCAGCCCCGAGGATCAC | + |
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Preference number: 6 (lower is better) Translates to: LFYSWANATISS*SQEEQGSPEDH Trigger: GTGATCCTCGGGGCTGCCCTGCTCCTCCTGACTTCAGGAGGAGATTGTGGCATTTGCCCAGCTATAAAAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108097.4 |
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| CDS TCA 72 bp | TGTCTTCCTCTGTCAAGGTGCTATCGACACATTGCTTaGTTTTTGCAGTATTTTCCAGTATTACAGGGTCAT | + |
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Preference number: 6 (lower is better) Translates to: CLPLSRCYRHIA*FLQYFPVLQGH Trigger: ATGACCCTGTAATACTGGAAAATACTGCAAAAATCAAGCAATGTGTCGATAGCACCTTGACAGAGGAAGACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108097.4 |
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