Pregenerated sensors for SCGB1B3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095257

Ensembl transcript IDs: ENSMUST00000179481.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	TGCATCTATGCAGGTGAGCAGGCAAGTGGCTTCCTTGAGACCAAAGTTGTAGCCTTCGATGAAAGCAGTTaGATGTGCCTTGTCTTCCTC	+
Preference number: 4 (lower is better) Translates to: CIYAGEQASGFLETKVVAFDESS*MCLVFL Trigger: GAGGAAGACAAGGCACATGCAACTGCTTTCATCGAA...GGCTACAACTTTGGTCTCAAGGAAGCCACTTGCCTGCTCACCTGCATAGATGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179481.2
CDS-3UTR CAA 90 bp	TGCATCTATGCAGGTGAGCAGGCAAGTGGCTTCCTTGAGACCAAAGTTGTAGCCGCAGTTGCATGTGCCTaGTCTTCCTCTGTCAATGTG	+
Preference number: 5 (lower is better) Translates to: CIYAGEQASGFLETKVVAAVACA*SSSVNV Trigger: CACATTGACAGAGGAAGACAAGGCACATGCAACTGC...GGCTACAACTTTGGTCTCAAGGAAGCCACTTGCCTGCTCACCTGCATAGATGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179481.2
CDS-3UTR CAA 90 bp	ACCTGCTGCATCTATGCAGGTGAGCAGGCAAGTGGCTTCCTTGAGACCAAAGTTATTTCAGGGTCATCTTaGTATTGTTTCACGTACTCA	+
Preference number: 5 (lower is better) Translates to: TCCIYAGEQASGFLETKVISGSS*YCFTYS Trigger: TGAGTACGTGAAACAATACAAAGATGACCCTGAAAT...AACTTTGGTCTCAAGGAAGCCACTTGCCTGCTCACCTGCATAGATGCAGCAGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179481.2
CDS TCA 90 bp	CATGTGCCTTGTCTTCCTCTGTCAATGTGCTATCAACACATTGCTTaGTTTTTGCAGTATTTTCCAGTATTTCAGGGTCATCTTTGTATT	+
Preference number: 5 (lower is better) Translates to: HVPCLPLSMCYQHIA*FLQYFPVFQGHLCI Trigger: AATACAAAGATGACCCTGAAATACTGGAAAATACTGCAAAAATCAAGCAATGTGTTGATAGCACATTGACAGAGGAAGACAAGGCACATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179481.2
CDS GCA 90 bp	CTTGTCTTCCTCTGTCAATGTGCTATCAACACATTGCTTGATTTTTaGAGTATTTTCCAGTATTTCAGGGTCATCTTTGTATTGTTTCAC	+
Preference number: 5 (lower is better) Translates to: LVFLCQCAINTLLDF*SIFQYFRVIFVLFH Trigger: GTGAAACAATACAAAGATGACCCTGAAATACTGGAAAATACTGCAAAAATCAAGCAATGTGTTGATAGCACATTGACAGAGGAAGACAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179481.2
CDS CAA 72 bp	TGCCTTGTCTTCCTCTGTCAATGTGCTATCAACACATaGCTTGATTTTTGCAGTATTTTCCAGTATTTCAGG	+
Preference number: 6 (lower is better) Translates to: CLVFLCQCAINT*LDFCSIFQYFR Trigger: CCTGAAATACTGGAAAATACTGCAAAAATCAAGCAATGTGTTGATAGCACATTGACAGAGGAAGACAAGGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179481.2
CDS CAA 72 bp	TTGTCTTCCTCTGTCAATGTGCTATCAACACATTGCTaGATTTTTGCAGTATTTTCCAGTATTTCAGGGTCA	+
Preference number: 6 (lower is better) Translates to: LSSSVNVLSTHC*IFAVFSSISGS Trigger: TGACCCTGAAATACTGGAAAATACTGCAAAAATCAAGCAATGTGTTGATAGCACATTGACAGAGGAAGACAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179481.2
CDS CAA 72 bp	ATTTTTGCAGTATTTTCCAGTATTTCAGGGTCATCTTaGTATTGTTTCACGTACTCAACATACTCTTCTGAG	+
Preference number: 6 (lower is better) Translates to: IFAVFSSISGSS*YCFTYSTYSSE Trigger: CTCAGAAGAGTATGTTGAGTACGTGAAACAATACAAAGATGACCCTGAAATACTGGAAAATACTGCAAAAAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179481.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu