RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SCGB1B27 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000066583

Ensembl transcript IDs: ENSMUST00000085618.5, ENSMUST00000173387.2

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGCCAAGATCAGGAAGCCTGGGAGTCCCTTCCTGCCCCATCCTCCTaGTATCCTCAATCAGGTGTGCCACTGCTCTGTATTCACAGAGAA +
Preference number: 1 (lower is better)
Translates to: GQDQEAWESLPAPSS*YPQSGVPLLCIHRE
Trigger: TTCTCTGTGAATACAGAGCAGTGGCACACCTGATTGAGGATATCAGGAGGATGGGGCAGGAAGGGACTCCCAGGCTTCCTGATCTTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
3UTR GCA 90 bp GGGAGTCCCTTCCTGCCCCATCCTCCTGATATCCTCAATCAGGTGTaGCACTGCTCTGTATTCACAGAGAAGCTTCCAAGTGGGGGAGAA +
Preference number: 1 (lower is better)
Translates to: GSPFLPHPPDILNQV*HCSVFTEKLPSGGE
Trigger: TTCTCCCCCACTTGGAAGCTTCTCTGTGAATACAGAGCAGTGGCACACCTGATTGAGGATATCAGGAGGATGGGGCAGGAAGGGACTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
3UTR CCA 90 bp GTGAATTGCAAAGCTTTTATTGTTGGATTCCTGTTCTTAGACACCTaGGGAGAAGGGGTAGGGCTTGCTGCATCTATGCTGGTGAGGAGG +
Preference number: 1 (lower is better)
Translates to: VNCKAFIVGFLFLDT*GEGVGLAASMLVRR
Trigger: CCTCCTCACCAGCATAGATGCAGCAAGCCCTACCCCTTCTCCCCAGGTGTCTAAGAACAGGAATCCAACAATAAAAGCTTTGCAATTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000085618.5
3UTR-3UTR TCA 90 bp AAAGACCCAGGTTGGAGAATGGTGCCAGGCCCCAAGCTTGTGCAACTAGACTTGGTGGCTTGGCTGAGTTaGGCAGCCAGGCCAAGATCA +
Preference number: 2 (lower is better)
Translates to: KDPGWRMVPGPKLVQLDLVAWLS*AARPRS
Trigger: TGATCTTGGCCTGGCTGCTCAACTCAGCCAAGCCAC...CAAGTCTAGTTGCACAAGCTTGGGGCCTGGCACCATTCTCCAACCTGGGTCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
3UTR-3UTR GCA 90 bp TGGGAGGCTGCGTCAGGAAGGTTGATAGAGGCCAAACTTGGGCAGGGATTTAGCAATCAGGTGTGCCACTaGTCTGTATTCACAGAGAAG +
Preference number: 2 (lower is better)
Translates to: WEAASGRLIEAKLGQGFSNQVCH*SVFTEK
Trigger: CTTCTCTGTGAATACAGAGCAGTGGCACACCTGATT...GCTAAATCCCTGCCCAAGTTTGGCCTCTATCAACCTTCCTGACGCAGCCTCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
3UTR-3UTR CCA 90 bp TGGGTTCAATTTAATTCTACCCTTGAATGTCCCAGCCCTGGAGTCCACACAGTGATAAAAGACCCAGGTTaGAGAATGGTGCCAGGCCCC +
Preference number: 2 (lower is better)
Translates to: WVQFNSTLECPSPGVHTVIKDPG*RMVPGP
Trigger: GGGGCCTGGCACCATTCTCCAACCTGGGTCTTTTAT...CACTGTGTGGACTCCAGGGCTGGGACATTCAAGGGTAGAATTAAATTGAACCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
3UTR-3UTR CCA 90 bp TCACATGATGATGACCCTCAGATATCTGCAGCTGACACAATAACTTATCCAACCCAAGATCAGGAAGCCTaGGAGTCCCTTCCTGCCCCA +
Preference number: 2 (lower is better)
Translates to: SHDDDPQISAADTITYPTQDQEA*ESLPAP
Trigger: TGGGGCAGGAAGGGACTCCCAGGCTTCCTGATCTTG...GGTTGGATAAGTTATTGTGTCAGCTGCAGATATCTGAGGGTCATCATCATGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
3UTR-3UTR CCA 90 bp TCACATGATGATGACCCTCAGATATCTGCAGCTGACACAATAACTTATCCAACCAGAGAAGCTTCCAAGTaGGGGAGAAGTATAAGTCCT +
Preference number: 2 (lower is better)
Translates to: SHDDDPQISAADTITYPTREASK*GRSISP
Trigger: AGGACTTATACTTCTCCCCCACTTGGAAGCTTCTCT...GGTTGGATAAGTTATTGTGTCAGCTGCAGATATCTGAGGGTCATCATCATGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
3UTR GCA 72 bp GCCAGGCCAAGATCAGGAAGCCTGGGAGTCCCTTCCTaGCCCATCCTCCTGATATCCTCAATCAGGTGTGCC +
Preference number: 3 (lower is better)
Translates to: ARPRSGSLGVPS*PILLISSIRCA
Trigger: GGCACACCTGATTGAGGATATCAGGAGGATGGGGCAGGAAGGGACTCCCAGGCTTCCTGATCTTGGCCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
3UTR TCA 72 bp AGGCCAAACTTGGGCAGGGATTTAGCGTGGCTTGGCTaGGTTGAGCAGCCAGGCCAAGATCAGGAAGCCTGG +
Preference number: 3 (lower is better)
Translates to: RPNLGRDLAWLG*VEQPGQDQEAW
Trigger: CCAGGCTTCCTGATCTTGGCCTGGCTGCTCAACTCAGCCAAGCCACGCTAAATCCCTGCCCAAGTTTGGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
3UTR TCA 72 bp AAACTTGGGCAGGGATTTAGCGTGGCTTGGCTGAGTTaGGCAGCCAGGCCAAGATCAGGAAGCCTGGGAGTC +
Preference number: 3 (lower is better)
Translates to: KLGQGFSVAWLS*AARPRSGSLGV
Trigger: GACTCCCAGGCTTCCTGATCTTGGCCTGGCTGCTCAACTCAGCCAAGCCACGCTAAATCCCTGCCCAAGTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
3UTR GCA 72 bp CCTGTTCTTAGACACCTGGGGAGAAGGGGTAGGGCTTaGTGCATCTATGCTGGTGAGGAGGCAATTGGTTTC +
Preference number: 3 (lower is better)
Translates to: PVLRHLGRRGRA*CIYAGEEAIGF
Trigger: GAAACCAATTGCCTCCTCACCAGCATAGATGCAGCAAGCCCTACCCCTTCTCCCCAGGTGTCTAAGAACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000085618.5
3UTR-3UTR CAA 90 bp GGACAAGAGTGGGTTCAATTTAATTCTACCCTTGAATGTCCCAGCCCTGGAGTCCGTGGCTTGGCTGAGTaGAGCAGCCAGGCCAAGATC +
Preference number: 3 (lower is better)
Translates to: GQEWVQFNSTLECPSPGVRGLAE*SSQAKI
Trigger: GATCTTGGCCTGGCTGCTCAACTCAGCCAAGCCACG...GACTCCAGGGCTGGGACATTCAAGGGTAGAATTAAATTGAACCCACTCTTGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
3UTR GCA 72 bp CCCCATCCTCCTGATATCCTCAATCAGGTGTGCCACTaGTCTGTATTCACAGAGAAGCTTCCAAGTGGGGGA +
Preference number: 3 (lower is better)
Translates to: PHPPDILNQVCH*SVFTEKLPSGG
Trigger: TCCCCCACTTGGAAGCTTCTCTGTGAATACAGAGCAGTGGCACACCTGATTGAGGATATCAGGAGGATGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
3UTR GCA 72 bp TTCCTGCCCCATCCTCCTGATATCCTCAATCAGGTGTaGCACTGCTCTGTATTCACAGAGAAGCTTCCAAGT +
Preference number: 3 (lower is better)
Translates to: FLPHPPDILNQV*HCSVFTEKLPS
Trigger: ACTTGGAAGCTTCTCTGTGAATACAGAGCAGTGGCACACCTGATTGAGGATATCAGGAGGATGGGGCAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
3UTR CCA 72 bp AAAGCTTTTATTGTTGGATTCCTGTTCTTAGACACCTaGGGAGAAGGGGTAGGGCTTGCTGCATCTATGCTG +
Preference number: 3 (lower is better)
Translates to: KAFIVGFLFLDT*GEGVGLAASML
Trigger: CAGCATAGATGCAGCAAGCCCTACCCCTTCTCCCCAGGTGTCTAAGAACAGGAATCCAACAATAAAAGCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000085618.5
3UTR-3UTR CAA 90 bp TCACATGATGATGACCCTCAGATATCTGCAGCTGACACAATAACTTATCCAACCGTCCACACAGTGACCTaGGAGATGCATAGAACAGGA +
Preference number: 3 (lower is better)
Translates to: SHDDDPQISAADTITYPTVHTVT*EMHRTG
Trigger: TCCTGTTCTATGCATCTCCAAGGTCACTGTGTGGAC...GGTTGGATAAGTTATTGTGTCAGCTGCAGATATCTGAGGGTCATCATCATGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
CDS-3UTR TCA 90 bp AGGCCAAGATCAGGAAGCCTGGGAGTCCCTTCCTGCCCCATCCTCCTGATATCCGCCACAATCTCCCTCTaGAATCAGGAGCAGGGCAGC +
Preference number: 4 (lower is better)
Translates to: RPRSGSLGVPSCPILLISATISL*NQEQGS
Trigger: GCTGCCCTGCTCCTGATTTCAGAGGGAGATTGTGGC...GGATATCAGGAGGATGGGGCAGGAAGGGACTCCCAGGCTTCCTGATCTTGGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
CDS-3UTR TCA 90 bp AGGCCAAGATCAGGAAGCCTGGGAGTCCCTTCCTGCCCCATCCTCCTGATATCCCGTAGAGACTCACGATaGGACTGGTTGCCTGTGCCT +
Preference number: 4 (lower is better)
Translates to: RPRSGSLGVPSCPILLISRRDSR*DWLPVP
Trigger: AGGCACAGGCAACCAGTCTCATCGTGAGTCTCTACG...GGATATCAGGAGGATGGGGCAGGAAGGGACTCCCAGGCTTCCTGATCTTGGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
CDS-3UTR TCA 90 bp TTCTTAGACACCTGGGGAGAAGGGGTAGGGCTTGCTGCATCTATGCTGGTGAGGGCCACAATCTCCCTCTaGAATCAGGAGCAGGGCAGC +
Preference number: 4 (lower is better)
Translates to: FLDTWGEGVGLAASMLVRATISL*NQEQGS
Trigger: GCTGCCCTGCTCCTGATTTCAGAGGGAGATTGTGGC...CCTCACCAGCATAGATGCAGCAAGCCCTACCCCTTCTCCCCAGGTGTCTAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000085618.5
CDS-3UTR GCA 90 bp AATAAAAGACCCAGGTTGGAGAATGGTGCCAGGCCCCAAGCTTGTGCAACTAGACACGATGAGACTGGTTaGCTGTGCCTTGTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: NKRPRLENGARPQACATRHDETG*LCLVFL
Trigger: GAGGAAGACAAGGCACAGGCAACCAGTCTCATCGTG...TCTAGTTGCACAAGCTTGGGGCCTGGCACCATTCTCCAACCTGGGTCTTTTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
CDS-3UTR GCA 90 bp TTTATTGTTGGATTCCTGTTCTTAGACACCTGGGGAGAAGGGGTAGGGCTTGCTATTGATGAGACTGGTTaGCTGTGCCTTGTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: FIVGFLFLDTWGEGVGLAIDETG*LCLVFL
Trigger: GAGGAAGACAAGGCACAGGCAACCAGTCTCATCAAT...AGCAAGCCCTACCCCTTCTCCCCAGGTGTCTAAGAACAGGAATCCAACAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000085618.5
CDS-3UTR CAA 90 bp GTTGGATTCCTGTTCTTAGACACCTGGGGAGAAGGGGTAGGGCTTGCTGCATCTCTGGCTGTTATTTTATaGATGAGACTGGTTGCCTGT +
Preference number: 5 (lower is better)
Translates to: VGFLFLDTWGEGVGLAASLAVIL*MRLVAC
Trigger: ACAGGCAACCAGTCTCATCAATAAAATAACAGCCAG...AGATGCAGCAAGCCCTACCCCTTCTCCCCAGGTGTCTAAGAACAGGAATCCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000085618.5
CDS GCA 72 bp TTAGCAAGACACGTAGAGACTCACGATGAGACTGGTTaGCTGTGCCTTGTCTTCCTCGGTCAAGGTCCTATC +
Preference number: 6 (lower is better)
Translates to: LARHVETHDETG*LCLVFLGQGPI
Trigger: GATAGGACCTTGACCGAGGAAGACAAGGCACAGGCAACCAGTCTCATCGTGAGTCTCTACGTGTCTTGCTAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173387.2
CDS GCA 72 bp TGTCCGGCTGGCTGTTATTTTATTGATGAGACTGGTTaGCTGTGCCTTGTCTTCCTCGGTCAAGGTCCTATC +
Preference number: 6 (lower is better)
Translates to: CPAGCYFIDETG*LCLVFLGQGPI
Trigger: GATAGGACCTTGACCGAGGAAGACAAGGCACAGGCAACCAGTCTCATCAATAAAATAACAGCCAGCCGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085618.5
CDS CAA 90 bp GCCTGTGCCTTGTCTTCCTCGGTCAAGGTCCTATCAGAACATTTCTaGATATTTGCAGCATTTTCCAGTACTTTAGTGTTTTCATTGAAT +
Preference number: 6 (lower is better)
Translates to: ACALSSSVKVLSEHF*IFAAFSSTLVFSLN
Trigger: ATTCAATGAAAACACTAAAGTACTGGAAAATGCTGCAAATATCAAGAAATGTTCTGATAGGACCTTGACCGAGGAAGACAAGGCACAGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085618.5
ENSMUST00000173387.2