Pregenerated sensors for SCGB1B20 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094978

Ensembl transcript IDs: ENSMUST00000166714.3

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	ATTGCAAGGTTTTATTGTTGGATTCCTGTTCTTAAACACCTGGAGTaGAGGACTATAATCTGCTGCATCTATGCAGGTAGGCAGGCAAGT	+
Preference number: 1 (lower is better) Translates to: IARFYCWIPVLKHLE*RTIICCIYAGRQAS Trigger: ACTTGCCTGCCTACCTGCATAGATGCAGCAGATTATAGTCCTTCACTCCAGGTGTTTAAGAACAGGAATCCAACAATAAAACCTTGCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166714.3
3UTR TCA 72 bp	TTTTATTGTTGGATTCCTGTTCTTAAACACCTGGAGTaGAGGACTATAATCTGCTGCATCTATGCAGGTAGG	+
Preference number: 3 (lower is better) Translates to: FYCWIPVLKHLE*RTIICCIYAGR Trigger: CCTACCTGCATAGATGCAGCAGATTATAGTCCTTCACTCCAGGTGTTTAAGAACAGGAATCCAACAATAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166714.3
CDS-3UTR TCA 90 bp	TCTGCTGCATCTATGCAGGTAGGCAGGCAAGTGGCTTCCTTGAGACCAAAATTGGCCACAATCTCCCCCTaGAGTCAGGAGGAGCAAGGC	+
Preference number: 4 (lower is better) Translates to: SAASMQVGRQVASLRPKLATISP*SQEEQG Trigger: GCCTTGCTCCTCCTGACTTCAGGGGGAGATTGTGGC...CAATTTTGGTCTCAAGGAAGCCACTTGCCTGCCTACCTGCATAGATGCAGCAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000166714.3
CDS-3UTR CAA 90 bp	TCTGCTGCATCTATGCAGGTAGGCAGGCAAGTGGCTTCCTTGAGACCAAAATTGGGTGCTATCGACACATaGCTTGATTTTTGCAGTATT	+
Preference number: 5 (lower is better) Translates to: SAASMQVGRQVASLRPKLGAIDT*LDFCSI Trigger: AATACTGCAAAAATCAAGCAATGTGTCGATAGCACC...CAATTTTGGTCTCAAGGAAGCCACTTGCCTGCCTACCTGCATAGATGCAGCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000166714.3
CDS GCA 90 bp	CTTGTCTTCCTCTGTCAAGGTGCTATCGACACATTGCTTGATTTTTaGAGTATTTTCCAGTATTACAGGGTCATCTTTGTATTGTTTCAC	+
Preference number: 5 (lower is better) Translates to: LVFLCQGAIDTLLDF*SIFQYYRVIFVLFH Trigger: GTGAAACAATACAAAGATGACCCTGTAATACTGGAAAATACTGCAAAAATCAAGCAATGTGTCGATAGCACCTTGACAGAGGAAGACAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000166714.3
CDS TCA 90 bp	CATGTATCTTGTCTTCCTCTGTCAAGGTGCTATCGACACATTGCTTaGTTTTTGCAGTATTTTCCAGTATTACAGGGTCATCTTTGTATT	+
Preference number: 5 (lower is better) Translates to: HVSCLPLSRCYRHIA*FLQYFPVLQGHLCI Trigger: AATACAAAGATGACCCTGTAATACTGGAAAATACTGCAAAAATCAAGCAATGTGTCGATAGCACCTTGACAGAGGAAGACAAGATACATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000166714.3
CDS-3UTR CAA 90 bp	TTGCAAGGTTTTATTGTTGGATTCCTGTTCTTAAACACCTGGAGTGAAGGACTAATTACAGGGTCATCTTaGTATTGTTTCACGTACTCA	+
Preference number: 5 (lower is better) Translates to: LQGFIVGFLFLNTWSEGLITGSS*YCFTYS Trigger: TGAGTACGTGAAACAATACAAAGATGACCCTGTAAT...TAGTCCTTCACTCCAGGTGTTTAAGAACAGGAATCCAACAATAAAACCTTGCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166714.3
CDS GCA 72 bp	TATCGGGCTGGCTTCTATCTTTTCTATGAAAGTAGTTaGATGTATCTTGTCTTCCTCTGTCAAGGTGCTATC	+
Preference number: 6 (lower is better) Translates to: YRAGFYLFYESS*MYLVFLCQGAI Trigger: GATAGCACCTTGACAGAGGAAGACAAGATACATGCAACTACTTTCATAGAAAAGATAGAAGCCAGCCCGATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166714.3
CDS CAA 72 bp	GCTTCTATCTTTTCTATGAAAGTAGTTGCATGTATCTaGTCTTCCTCTGTCAAGGTGCTATCGACACATTGC	+
Preference number: 6 (lower is better) Translates to: ASIFSMKVVACI*SSSVKVLSTHC Trigger: GCAATGTGTCGATAGCACCTTGACAGAGGAAGACAAGATACATGCAACTACTTTCATAGAAAAGATAGAAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166714.3