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Pregenerated sensors for SCGB1B19 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095232

Ensembl transcript IDs: ENSMUST00000165813.4

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp CCTGTTCTTAGACACCTAGAGGGAAGGACTATAATCTaGTGCATCTATGCAGGTGAGCAGGCAAGTGGATTC +
Preference number: 3 (lower is better)
Translates to: PVLRHLEGRTII*CIYAGEQASGF
Trigger: GAATCCACTTGCCTGCTCACCTGCATAGATGCAGCAGATTATAGTCCTTCCCTCTAGGTGTCTAAGAACAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165813.4
CDS-3UTR TCA 90 bp ATCTGCTGCATCTATGCAGGTGAGCAGGCAAGTGGATTCCTTGAGACCAAAGTTGCCACAATCTCCCCCTaGAGTCAGGAGGAGCAGGGC +
Preference number: 4 (lower is better)
Translates to: ICCIYAGEQASGFLETKVATISP*SQEEQG
Trigger: GCCCTGCTCCTCCTGACTTCAGGGGGAGATTGTGGC...AACTTTGGTCTCAAGGAATCCACTTGCCTGCTCACCTGCATAGATGCAGCAGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000165813.4
CDS-3UTR GCA 90 bp TCTGCTGCATCTATGCAGGTGAGCAGGCAAGTGGATTCCTTGAGACCAAAGTTGGAAAGTAGTTGCATGTaGCCTGTCTTCCTCTGTCAA +
Preference number: 4 (lower is better)
Translates to: SAASMQVSRQVDSLRPKLESSCM*PVFLCQ
Trigger: TTGACAGAGGAAGACAGGGCACATGCAACTACTTTC...CAACTTTGGTCTCAAGGAATCCACTTGCCTGCTCACCTGCATAGATGCAGCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165813.4
CDS-3UTR GCA 90 bp ATCTGCTGCATCTATGCAGGTGAGCAGGCAAGTGGATTCCTTGAGACCAAAGTTTTCTATGAAAGTAGTTaGATGTGCCCTGTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: ICCIYAGEQASGFLETKVFYESS*MCPVFL
Trigger: GAGGAAGACAGGGCACATGCAACTACTTTCATAGAA...AACTTTGGTCTCAAGGAATCCACTTGCCTGCTCACCTGCATAGATGCAGCAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165813.4
CDS-3UTR CAA 90 bp TCTGCTGCATCTATGCAGGTGAGCAGGCAAGTGGATTCCTTGAGACCAAAGTTGACTACAGGGTCATCTTaGTATTGTTTCACGTACTCA +
Preference number: 5 (lower is better)
Translates to: SAASMQVSRQVDSLRPKLTTGSS*YCFTYS
Trigger: TGAGTACGTGAAACAATACAAAGATGACCCTGTAGT...CAACTTTGGTCTCAAGGAATCCACTTGCCTGCTCACCTGCATAGATGCAGCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165813.4
CDS GCA 90 bp GTTGCATGTGCCCTGTCTTCCTCTGTCAAGGTGCTATTGACACATTaGTTTATTTTTGCAGTATTTTCCAGTACTACAGGGTCATCTTTG +
Preference number: 5 (lower is better)
Translates to: VACALSSSVKVLLTH*FIFAVFSSTTGSSL
Trigger: CAAAGATGACCCTGTAGTACTGGAAAATACTGCAAAAATAAAGCAATGTGTCAATAGCACCTTGACAGAGGAAGACAGGGCACATGCAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165813.4
CDS GCA 72 bp GCTGGCTTCTATCTTTTCTATGAAAGTAGTTGCATGTaGCCTGTCTTCCTCTGTCAAGGTGCTATTGACACA +
Preference number: 6 (lower is better)
Translates to: AGFYLFYESSCM*PVFLCQGAIDT
Trigger: TGTGTCAATAGCACCTTGACAGAGGAAGACAGGGCACATGCAACTACTTTCATAGAAAAGATAGAAGCCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165813.4
CDS CAA 72 bp GTTGCATGTGCCCTGTCTTCCTCTGTCAAGGTGCTATaGACACATTGCTTTATTTTTGCAGTATTTTCCAGT +
Preference number: 6 (lower is better)
Translates to: VACALSSSVKVL*THCFIFAVFSS
Trigger: ACTGGAAAATACTGCAAAAATAAAGCAATGTGTCAATAGCACCTTGACAGAGGAAGACAGGGCACATGCAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165813.4
CDS CAA 90 bp AGTTGCATGTGCCCTGTCTTCCTCTGTCAAGGTGCTATTGACACATaGCTTTATTTTTGCAGTATTTTCCAGTACTACAGGGTCATCTTT +
Preference number: 6 (lower is better)
Translates to: SCMCPVFLCQGAIDT*LYFCSIFQYYRVIF
Trigger: AAAGATGACCCTGTAGTACTGGAAAATACTGCAAAAATAAAGCAATGTGTCAATAGCACCTTGACAGAGGAAGACAGGGCACATGCAACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165813.4
CDS CAA 72 bp ATTTTTGCAGTATTTTCCAGTACTACAGGGTCATCTTaGTATTGTTTCACGTACTCAACATACGCTTCTGAG +
Preference number: 6 (lower is better)
Translates to: IFAVFSSTTGSS*YCFTYSTYASE
Trigger: CTCAGAAGCGTATGTTGAGTACGTGAAACAATACAAAGATGACCCTGTAGTACTGGAAAATACTGCAAAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000165813.4