Pregenerated sensors for SCGB1B18 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000101401

Ensembl transcript IDs: ENSMUST00000191255.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 72 bp	GTTCTTAGACACCTGGAGAGAAGGACTGTAATCTGCTaGATCTATGCAGGTGAGCAGGCAAGTGGCTTCCTT	+
Preference number: 3 (lower is better) Translates to: VLRHLERRTVIC*IYAGEQASGFL Trigger: AAGGAAGCCACTTGCCTGCTCACCTGCATAGATGCAGCAGATTACAGTCCTTCTCTCCAGGTGTCTAAGAAC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191255.2
CDS-3UTR CAA 90 bp	TCTGCTGCATCTATGCAGGTGAGCAGGCAAGTGGCTTCCTTGAGACCAAAGTTGCTATCGACACATTGGTaGATTTTTGCAGTATTTTCC	+
Preference number: 5 (lower is better) Translates to: SAASMQVSRQVASLRPKLLSTHW*IFAVFS Trigger: GGAAAATACTGCAAAAATCAACCAATGTGTCGATAG...CAACTTTGGTCTCAAGGAAGCCACTTGCCTGCTCACCTGCATAGATGCAGCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000191255.2
CDS-3UTR CAA 90 bp	TCTGCTGCATCTATGCAGGTGAGCAGGCAAGTGGCTTCCTTGAGACCAAAGTTGAGTGCTATCGACACATaGGTTGATTTTTGCAGTATT	+
Preference number: 5 (lower is better) Translates to: SAASMQVSRQVASLRPKLSAIDT*VDFCSI Trigger: AATACTGCAAAAATCAACCAATGTGTCGATAGCACT...CAACTTTGGTCTCAAGGAAGCCACTTGCCTGCTCACCTGCATAGATGCAGCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000191255.2
CDS CCA 72 bp	GTCATATCTTTCTCTGTCAAAGTGCTATCGACACATTaGTTGATTTTTGCAGTATTTTCCAGTATTACAGGG	+
Preference number: 6 (lower is better) Translates to: VISFSVKVLSTH*LIFAVFSSITG Trigger: CCCTGTAATACTGGAAAATACTGCAAAAATCAACCAATGTGTCGATAGCACTTTGACAGAGAAAGATATGAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000191255.2
CDS CAA 90 bp	CATTGGTTGATTTTTGCAGTATTTTCCAGTATTACAGGGTCATCTTaGTATTGTTTCACGTACTCAACATACTCCTCTGAGGTTCCATTT	+
Preference number: 6 (lower is better) Translates to: HWLIFAVFSSITGSS*YCFTYSTYSSEVPF Trigger: AAATGGAACCTCAGAGGAGTATGTTGAGTACGTGAAACAATACAAAGATGACCCTGTAATACTGGAAAATACTGCAAAAATCAACCAATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000191255.2

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