Pregenerated sensors for SCGB1B15 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000101232

Ensembl transcript IDs: ENSMUST00000189118.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 72 bp	CCTGTTCTTAGACACCTGAAGGGAAGGGCTATAGCCTaGTGCATCTATGCAGGTGAGAAGGCAAATGGCTTC	+
Preference number: 3 (lower is better) Translates to: PVLRHLKGRAIA*CIYAGEKANGF Trigger: GAAGCCATTTGCCTTCTCACCTGCATAGATGCAGCAGGCTATAGCCCTTCCCTTCAGGTGTCTAAGAACAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000189118.2
3UTR GCA 72 bp	GTTCTTAGACACCTGAAGGGAAGGGCTATAGCCTGCTaGATCTATGCAGGTGAGAAGGCAAATGGCTTCCTT	+
Preference number: 3 (lower is better) Translates to: VLRHLKGRAIAC*IYAGEKANGFL Trigger: AAGGAAGCCATTTGCCTTCTCACCTGCATAGATGCAGCAGGCTATAGCCCTTCCCTTCAGGTGTCTAAGAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000189118.2
CDS TCA 90 bp	TTCACATACTCAACATACTCTTCTGAGGTTCCGTTTAAAAATAGATaGACATCCTCTTTCATAGCTGGGCAAATGCCACAATCTCCCCAT	+
Preference number: 5 (lower is better) Translates to: FTYSTYSSEVPFKNR*TSSFIAGQMPQSPH Trigger: ATGGGGAGATTGTGGCATTTGCCCAGCTATGAAAGAGGATGTTCATCTATTTTTAAACGGAACCTCAGAAGAGTATGTTGAGTATGTGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000189118.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu