Pregenerated sensors for SCGB1B12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000101520Ensembl transcript IDs: ENSMUST00000188355.2
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | TGTTGGATTCCTGTTCTTAGACACCTAGAGGGAAAGACTATAATCTaGCGCATCTATGCAGGTGAGCAGGCAGTGGATTCCTTGAGACCA | + |
Preference number: 1 (lower is better) Translates to: CWIPVLRHLEGKTII*RIYAGEQAVDSLRP Trigger: TGGTCTCAAGGAATCCACTGCCTGCTCACCTGCATAGATGCGGCAGATTATAGTCTTTCCCTCTAGGTGTCTAAGAACAGGAATCCAACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188355.2 |
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3UTR GCA 72 bp | CCTGTTCTTAGACACCTAGAGGGAAAGACTATAATCTaGCGCATCTATGCAGGTGAGCAGGCAGTGGATTCC | + |
Preference number: 3 (lower is better) Translates to: PVLRHLEGKTII*RIYAGEQAVDS Trigger: GGAATCCACTGCCTGCTCACCTGCATAGATGCGGCAGATTATAGTCTTTCCCTCTAGGTGTCTAAGAACAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188355.2 |
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3UTR TCA 72 bp | AGAGGGAAAGACTATAATCTGCCGCATCTATGCAGGTaGGCAGGCAGTGGATTCCTTGAGACCAAAGTTGTA | + |
Preference number: 3 (lower is better) Translates to: RGKDYNLPHLCR*AGSGFLETKVV Trigger: TACAACTTTGGTCTCAAGGAATCCACTGCCTGCTCACCTGCATAGATGCGGCAGATTATAGTCTTTCCCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188355.2 |
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CDS-3UTR CAA 90 bp | ATCTGCCGCATCTATGCAGGTGAGCAGGCAGTGGATTCCTTGAGACCAAAGTTGGTTACAGGGTCATCTTaGTATTGTTTCACGTACTCA | + |
Preference number: 5 (lower is better) Translates to: ICRIYAGEQAVDSLRPKLVTGSS*YCFTYS Trigger: TGAGTACGTGAAACAATACAAAGATGACCCTGTAAC...CAACTTTGGTCTCAAGGAATCCACTGCCTGCTCACCTGCATAGATGCGGCAGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188355.2 |
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CDS-3UTR CAA 90 bp | GAGGGAAAGACTATAATCTGCCGCATCTATGCAGGTGAGCAGGCAGTGGATTCCGGTGCTATCGACACATaGCTTTATTTTTGCAGTATT | + |
Preference number: 5 (lower is better) Translates to: EGKTIICRIYAGEQAVDSGAIDT*LYFCSI Trigger: AATACTGCAAAAATAAAGCAATGTGTCGATAGCACC...GGAATCCACTGCCTGCTCACCTGCATAGATGCGGCAGATTATAGTCTTTCCCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000188355.2 |
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CDS GCA 90 bp | GTCGCATGTGCCCTGTCTTCCTCTGTCAAGGTGCTATCGACACATTaGTTTATTTTTGCAGTATTTTCCAGTGTTACAGGGTCATCTTTG | + |
Preference number: 5 (lower is better) Translates to: VACALSSSVKVLSTH*FIFAVFSSVTGSSL Trigger: CAAAGATGACCCTGTAACACTGGAAAATACTGCAAAAATAAAGCAATGTGTCGATAGCACCTTGACAGAGGAAGACAGGGCACATGCGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000188355.2 |
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CDS GCA 72 bp | GCTGGCTTCTATCTTTTCTATGAAAGTAGTCGCATGTaGCCTGTCTTCCTCTGTCAAGGTGCTATCGACACA | + |
Preference number: 6 (lower is better) Translates to: AGFYLFYESSRM*PVFLCQGAIDT Trigger: TGTGTCGATAGCACCTTGACAGAGGAAGACAGGGCACATGCGACTACTTTCATAGAAAAGATAGAAGCCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188355.2 |
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CDS CAA 90 bp | AGTCGCATGTGCCCTGTCTTCCTCTGTCAAGGTGCTATCGACACATaGCTTTATTTTTGCAGTATTTTCCAGTGTTACAGGGTCATCTTT | + |
Preference number: 6 (lower is better) Translates to: SRMCPVFLCQGAIDT*LYFCSIFQCYRVIF Trigger: AAAGATGACCCTGTAACACTGGAAAATACTGCAAAAATAAAGCAATGTGTCGATAGCACCTTGACAGAGGAAGACAGGGCACATGCGACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000188355.2 |
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CDS CAA 90 bp | CCCTGTCTTCCTCTGTCAAGGTGCTATCGACACATTGCTTTATTTTaGCAGTATTTTCCAGTGTTACAGGGTCATCTTTGTATTGTTTCA | + |
Preference number: 6 (lower is better) Translates to: PCLPLSRCYRHIALF*QYFPVLQGHLCIVS Trigger: TGAAACAATACAAAGATGACCCTGTAACACTGGAAAATACTGCAAAAATAAAGCAATGTGTCGATAGCACCTTGACAGAGGAAGACAGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000188355.2 |
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CDS CAA 72 bp | ATTTTTGCAGTATTTTCCAGTGTTACAGGGTCATCTTaGTATTGTTTCACGTACTCAACATACGCTTCTGAG | + |
Preference number: 6 (lower is better) Translates to: IFAVFSSVTGSS*YCFTYSTYASE Trigger: CTCAGAAGCGTATGTTGAGTACGTGAAACAATACAAAGATGACCCTGTAACACTGGAAAATACTGCAAAAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000188355.2 |