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Pregenerated sensors for SCGB1B12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000101520

Ensembl transcript IDs: ENSMUST00000188355.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGTTGGATTCCTGTTCTTAGACACCTAGAGGGAAAGACTATAATCTaGCGCATCTATGCAGGTGAGCAGGCAGTGGATTCCTTGAGACCA +
Preference number: 1 (lower is better)
Translates to: CWIPVLRHLEGKTII*RIYAGEQAVDSLRP
Trigger: TGGTCTCAAGGAATCCACTGCCTGCTCACCTGCATAGATGCGGCAGATTATAGTCTTTCCCTCTAGGTGTCTAAGAACAGGAATCCAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188355.2
3UTR GCA 72 bp CCTGTTCTTAGACACCTAGAGGGAAAGACTATAATCTaGCGCATCTATGCAGGTGAGCAGGCAGTGGATTCC +
Preference number: 3 (lower is better)
Translates to: PVLRHLEGKTII*RIYAGEQAVDS
Trigger: GGAATCCACTGCCTGCTCACCTGCATAGATGCGGCAGATTATAGTCTTTCCCTCTAGGTGTCTAAGAACAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188355.2
3UTR TCA 72 bp AGAGGGAAAGACTATAATCTGCCGCATCTATGCAGGTaGGCAGGCAGTGGATTCCTTGAGACCAAAGTTGTA +
Preference number: 3 (lower is better)
Translates to: RGKDYNLPHLCR*AGSGFLETKVV
Trigger: TACAACTTTGGTCTCAAGGAATCCACTGCCTGCTCACCTGCATAGATGCGGCAGATTATAGTCTTTCCCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188355.2
CDS-3UTR CAA 90 bp ATCTGCCGCATCTATGCAGGTGAGCAGGCAGTGGATTCCTTGAGACCAAAGTTGGTTACAGGGTCATCTTaGTATTGTTTCACGTACTCA +
Preference number: 5 (lower is better)
Translates to: ICRIYAGEQAVDSLRPKLVTGSS*YCFTYS
Trigger: TGAGTACGTGAAACAATACAAAGATGACCCTGTAAC...CAACTTTGGTCTCAAGGAATCCACTGCCTGCTCACCTGCATAGATGCGGCAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188355.2
CDS-3UTR CAA 90 bp GAGGGAAAGACTATAATCTGCCGCATCTATGCAGGTGAGCAGGCAGTGGATTCCGGTGCTATCGACACATaGCTTTATTTTTGCAGTATT +
Preference number: 5 (lower is better)
Translates to: EGKTIICRIYAGEQAVDSGAIDT*LYFCSI
Trigger: AATACTGCAAAAATAAAGCAATGTGTCGATAGCACC...GGAATCCACTGCCTGCTCACCTGCATAGATGCGGCAGATTATAGTCTTTCCCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000188355.2
CDS GCA 90 bp GTCGCATGTGCCCTGTCTTCCTCTGTCAAGGTGCTATCGACACATTaGTTTATTTTTGCAGTATTTTCCAGTGTTACAGGGTCATCTTTG +
Preference number: 5 (lower is better)
Translates to: VACALSSSVKVLSTH*FIFAVFSSVTGSSL
Trigger: CAAAGATGACCCTGTAACACTGGAAAATACTGCAAAAATAAAGCAATGTGTCGATAGCACCTTGACAGAGGAAGACAGGGCACATGCGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000188355.2
CDS GCA 72 bp GCTGGCTTCTATCTTTTCTATGAAAGTAGTCGCATGTaGCCTGTCTTCCTCTGTCAAGGTGCTATCGACACA +
Preference number: 6 (lower is better)
Translates to: AGFYLFYESSRM*PVFLCQGAIDT
Trigger: TGTGTCGATAGCACCTTGACAGAGGAAGACAGGGCACATGCGACTACTTTCATAGAAAAGATAGAAGCCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188355.2
CDS CAA 90 bp AGTCGCATGTGCCCTGTCTTCCTCTGTCAAGGTGCTATCGACACATaGCTTTATTTTTGCAGTATTTTCCAGTGTTACAGGGTCATCTTT +
Preference number: 6 (lower is better)
Translates to: SRMCPVFLCQGAIDT*LYFCSIFQCYRVIF
Trigger: AAAGATGACCCTGTAACACTGGAAAATACTGCAAAAATAAAGCAATGTGTCGATAGCACCTTGACAGAGGAAGACAGGGCACATGCGACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000188355.2
CDS CAA 90 bp CCCTGTCTTCCTCTGTCAAGGTGCTATCGACACATTGCTTTATTTTaGCAGTATTTTCCAGTGTTACAGGGTCATCTTTGTATTGTTTCA +
Preference number: 6 (lower is better)
Translates to: PCLPLSRCYRHIALF*QYFPVLQGHLCIVS
Trigger: TGAAACAATACAAAGATGACCCTGTAACACTGGAAAATACTGCAAAAATAAAGCAATGTGTCGATAGCACCTTGACAGAGGAAGACAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188355.2
CDS CAA 72 bp ATTTTTGCAGTATTTTCCAGTGTTACAGGGTCATCTTaGTATTGTTTCACGTACTCAACATACGCTTCTGAG +
Preference number: 6 (lower is better)
Translates to: IFAVFSSVTGSS*YCFTYSTYASE
Trigger: CTCAGAAGCGTATGTTGAGTACGTGAAACAATACAAAGATGACCCTGTAACACTGGAAAATACTGCAAAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000188355.2