Pregenerated sensors for SCGB1A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024653Ensembl transcript IDs: ENSMUST00000025554.3
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CGCAGTTTATTGCAAAGAGGAAGGAGGGGTTGGTGTGGGGAAGCCGAGGAGCCGGGAGACACAGGGCAGTaGCAAGGCTTTAGCAGTAGA | + |
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Preference number: 2 (lower is better) Translates to: RSLLQRGRRGWCGEAEEPGDTGQ*QGFSSR Trigger: TCTACTGCTAAAGCCTTGTCACTGCCCTGTGTCTCC...CGGCTCCTCGGCTTCCCCACACCAACCCCTCCTTCCTCTTTGCAATAAACTGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025554.3 |
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| 3UTR CCA 72 bp | TCGCAGTTTATTGCAAAGAGGAAGGAGGGGTTGGTGTaGGGAAGCCGAGGAGCCGAGGAGACACAGGGCAGT | + |
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Preference number: 3 (lower is better) Translates to: SQFIAKRKEGLV*GSRGAEETQGS Trigger: ACTGCCCTGTGTCTCCTCGGCTCCTCGGCTTCCCCACACCAACCCCTCCTTCCTCTTTGCAATAAACTGCGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025554.3 |
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| 3UTR CCA 72 bp | GATGCTCGCAGTTTATTGCAAAGAGGAAGGAGGGGTTaGTGTGGGGAAGCCGAGGAGCCGAGGAGACACAGG | + |
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Preference number: 3 (lower is better) Translates to: DARSLLQRGRRG*CGEAEEPRRHR Trigger: CCTGTGTCTCCTCGGCTCCTCGGCTTCCCCACACCAACCCCTCCTTCCTCTTTGCAATAAACTGCGAGCATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025554.3 |
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| 3UTR TCA 72 bp | GTGGGGAAGCCGAGGAGCCGAGGAGACACAGGGCAGTaGCAAGGCTTTAGCAGTAGAATATCTCTGAAATCC | + |
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Preference number: 3 (lower is better) Translates to: VGKPRSRGDTGQ*QGFSSRISLKS Trigger: GGATTTCAGAGATATTCTACTGCTAAAGCCTTGTCACTGCCCTGTGTCTCCTCGGCTCCTCGGCTTCCCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025554.3 |
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| 3UTR CAA 72 bp | AGATGCTCGCAGTTTATTGCAAAGAGGAAGGAGGGGTaGGTGTGGGGAAGCCGAGGAGCCGAGGAGACACAG | + |
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Preference number: 4 (lower is better) Translates to: RCSQFIAKRKEG*VWGSRGAEETQ Trigger: CTGTGTCTCCTCGGCTCCTCGGCTTCCCCACACCAACCCCTCCTTCCTCTTTGCAATAAACTGCGAGCATCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025554.3 |
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| CDS-3UTR TCA 90 bp | CAGTTTATTGCAAAGAGGAAGGAGGGGTTGGTGTGGGGAAGCCGAGGAGCCGAGAGGGCCTCAAGGACTTaGAGAAATCCTGGGCAGATG | + |
|
Preference number: 4 (lower is better) Translates to: QFIAKRKEGLVWGSRGAERASRT*RNPGQM Trigger: CATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCT...CTCGGCTCCTCGGCTTCCCCACACCAACCCCTCCTTCCTCTTTGCAATAAACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025554.3 |
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| CDS-3UTR TCA 90 bp | CAGTTTATTGCAAAGAGGAAGGAGGGGTTGGTGTGGGGAAGCCGAGGAGCCGAGCAGACTCTGATTCCATaGGGAGGGCCTCAAGGACTT | + |
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Preference number: 4 (lower is better) Translates to: QFIAKRKEGLVWGSRGAEQTLIP*GGPQGL Trigger: AAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTG...CTCGGCTCCTCGGCTTCCCCACACCAACCCCTCCTTCCTCTTTGCAATAAACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025554.3 |
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| CDS-3UTR TCA 90 bp | GGTGAGATGCTCGCAGTTTATTGCAAAGAGGAAGGAGGGGTTGGTGTGGGGAAGCACATAACCAGACTCTaGTTCCATGAGGAGGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: GEMLAVYCKEEGGVGVGKHITRL*FHEEGL Trigger: GAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTG...CTTCCCCACACCAACCCCTCCTTCCTCTTTGCAATAAACTGCGAGCATCTCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025554.3 |
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| CDS-3UTR GCA 90 bp | GCAGTTTATTGCAAAGAGGAAGGAGGGGTTGGTGTGGGGAAGCCGAGGAGCCGACAGAATCTTAAATCTTaGTTACACAGAGGACTTGTT | + |
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Preference number: 4 (lower is better) Translates to: AVYCKEEGGVGVGKPRSRQNLKS*LHRGLV Trigger: AACAAGTCCTCTGTGTAAGCAAGATTTAAGATTCTG...TCGGCTCCTCGGCTTCCCCACACCAACCCCTCCTTCCTCTTTGCAATAAACTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025554.3 |
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| CDS-3UTR CAA 90 bp | CGCAGTTTATTGCAAAGAGGAAGGAGGGGTTGGTGTGGGGAAGCCGAGGAGCCGGTTTATCCTGGTCTCTaGTGGGAGGGTATCCACCAG | + |
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Preference number: 5 (lower is better) Translates to: RSLLQRGRRGWCGEAEEPVYPGL*WEGIHQ Trigger: CTGGTGGATACCCTCCCACAAGAGACCAGGATAAAC...CGGCTCCTCGGCTTCCCCACACCAACCCCTCCTTCCTCTTTGCAATAAACTGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025554.3 |
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| CDS TCA 90 bp | GGTATCCACCAGTCTCTTCAGCTGGGTGCCCGCATTTTGCAGGTCTaGGCCAGGGTTGAAAGGCTTCAGGGATGCCACATAACCAGACTC | + |
|
Preference number: 5 (lower is better) Translates to: GIHQSLQLGARILQV*ARVERLQGCHITRL Trigger: GAGTCTGGTTATGTGGCATCCCTGAAGCCTTTCAACCCTGGCTCAGACCTGCAAAATGCGGGCACCCAGCTGAAGAGACTGGTGGATACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025554.3 |
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| CDS-3UTR CAA 90 bp | TCGCAGTTTATTGCAAAGAGGAAGGAGGGGTTGGTGTGGGGAAGCCGAGGAGCCGAGGGCCTCAAGGACTaGAAGAAATCCTGGGCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: SQFIAKRKEGLVWGSRGAEGLKD*KKSWAD Trigger: ATCTGCCCAGGATTTCTTCAAGTCCTTGAGGCCCTC...GGCTCCTCGGCTTCCCCACACCAACCCCTCCTTCCTCTTTGCAATAAACTGCGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025554.3 |
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| CDS CCA 72 bp | CTCCGTGAGCTTCATGATGTTTATCCTGGTCTCTTGTaGGAGGGTATCCACCAGTCTCTTCAGCTGGGTGCC | + |
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Preference number: 6 (lower is better) Translates to: LRELHDVYPGLL*EGIHQSLQLGA Trigger: GGCACCCAGCTGAAGAGACTGGTGGATACCCTCCCACAAGAGACCAGGATAAACATCATGAAGCTCACGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025554.3 |
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| CDS TCA 72 bp | GCTTCAGGGATGCCACATAACCAGACTCTGATTCCATaGGGAGGGCCTCAAGGACTTGAAGAAATCCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: ASGMPHNQTLIP*GGPQGLEEILG Trigger: GCCCAGGATTTCTTCAAGTCCTTGAGGCCCTCCTCATGGAATCAGAGTCTGGTTATGTGGCATCCCTGAAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025554.3 |
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