Pregenerated sensors for SCG5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023236Ensembl transcript IDs: ENSMUST00000024005.8
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CATTTATTAAGAAGCAGCAGAGTGAGATGTGTCACCCCCTCTGCTTaGGTACAAACTTCTTTATTGGTGTGTAACAAGGCCCAAGGGCTA | + |
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Preference number: 1 (lower is better) Translates to: HLLRSSRVRCVTPSA*VQTSLLVCNKAQGL Trigger: TAGCCCTTGGGCCTTGTTACACACCAATAAAGAAGTTTGTACTCAAGCAGAGGGGGTGACACATCTCACTCTGCTGCTTCTTAATAAATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| 3UTR GCA 90 bp | GTATGGAGGCAAGGACAGCTGCTTTTCATCCATAAATATGTAAAATaGATGCTGTCACTCACGGGCTCTATGAACATGCACATAAGCATT | + |
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Preference number: 1 (lower is better) Translates to: VWRQGQLLFIHKYVK*MLSLTGSMNMHISI Trigger: AATGCTTATGTGCATGTTCATAGAGCCCGTGAGTGACAGCATGCATTTTACATATTTATGGATGAAAAGCAGCTGTCCTTGCCTCCATAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| 3UTR-3UTR CCA 90 bp | GGACAGCTGCTTTTCATCCATAAATATGTAAAATGCATGCTGTCACTCACGGGCCATGCACATAAGCATTaGATGGGTTTCTACATACTG | + |
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Preference number: 2 (lower is better) Translates to: GQLLFIHKYVKCMLSLTGHAHKH*MGFYIL Trigger: CAGTATGTAGAAACCCATCCAATGCTTATGTGCATG...GCCCGTGAGTGACAGCATGCATTTTACATATTTATGGATGAAAAGCAGCTGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| 3UTR-3UTR CCA 90 bp | TCTTTATTGGTGTGTAACAAGGCCCAAGGGCTAGATACACTACATAATCAAAATAGAAAGCACAGGCATTaGTATGGAGGCAAGGACAGC | + |
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Preference number: 2 (lower is better) Translates to: SLLVCNKAQGLDTLHNQNRKHRH*YGGKDS Trigger: GCTGTCCTTGCCTCCATACCAATGCCTGTGCTTTCT...ATTTTGATTATGTAGTGTATCTAGCCCTTGGGCCTTGTTACACACCAATAAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| 3UTR GCA 72 bp | CAAGGACAGCTGCTTTTCATCCATAAATATGTAAAATaGATGCTGTCACTCACGGGCTCTATGAACATGCAC | + |
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Preference number: 3 (lower is better) Translates to: QGQLLFIHKYVK*MLSLTGSMNMH Trigger: GTGCATGTTCATAGAGCCCGTGAGTGACAGCATGCATTTTACATATTTATGGATGAAAAGCAGCTGTCCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR TCA 90 bp | TGTAGCAGAAAGCACAGGCATTGGTATGGAGGCAAGGACAGCTGCTTTTCATCCACTGGAATTCTCGGCTaGACTCTGCAGTGTCGGGGG | + |
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Preference number: 4 (lower is better) Translates to: CSRKHRHWYGGKDSCFSSTGILG*TLQCRG Trigger: CCCCCGACACTGCAGAGTTCAGCCGAGAATTCCAGT...GGATGAAAAGCAGCTGTCCTTGCCTCCATACCAATGCCTGTGCTTTCTGCTACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR CCA 90 bp | CAATGCTCGCACATACATTTATTAAGAAGCAGCAGAGTGAGATGTGTCACCCCCACTCCACGCGTGGCCTaGCAATGCCCAGCTGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: QCSHIHLLRSSRVRCVTPTPRVA*QCPAAP Trigger: TGGAGCAGCTGGGCATTGCCAGGCCACGCGTGGAGT...GGGGGTGACACATCTCACTCTGCTGCTTCTTAATAAATGTATGTGCGAGCATTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR TCA 90 bp | GATGTGTCACCCCCTCTGCTTGAGTACAAACTTCTTTATTGGTGTGTAACAAGGCTGGATGTCTGTCTCTaGGACCCGGTCAGGGGTCCG | + |
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Preference number: 4 (lower is better) Translates to: DVSPPLLEYKLLYWCVTRLDVCL*DPVRGP Trigger: CGGACCCCTGACCGGGTCTCAGAGACAGACATCCAG...CCTTGTTACACACCAATAAAGAAGTTTGTACTCAAGCAGAGGGGGTGACACATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR CCA 90 bp | TCACCCCCTCTGCTTGAGTACAAACTTCTTTATTGGTGTGTAACAAGGCCCAAGCCGGTCAGGGGTCCGTaGACTATAAGCGAATGCTGG | + |
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Preference number: 4 (lower is better) Translates to: SPPLLEYKLLYWCVTRPKPVRGP*TISECW Trigger: CCAGCATTCGCTTATAGTCCACGGACCCCTGACCGG...CTTGGGCCTTGTTACACACCAATAAAGAAGTTTGTACTCAAGCAGAGGGGGTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR TCA 90 bp | AGACTTGGCCCAAACAGCATAACCCAAAACTGCAAGAAATCTGAGTATTTCATAAGATTCATGGCCTGGTaGGCCGGGTACTCCACGCGT | + |
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Preference number: 4 (lower is better) Translates to: RLGPNSITQNCKKSEYFIRFMAW*AGYSTR Trigger: ACGCGTGGAGTACCCGGCTCACCAGGCCATGAATCT...TATGAAATACTCAGATTTCTTGCAGTTTTGGGTTATGCTGTTTGGGCCAAGTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR CCA 90 bp | AGGCAAGGACAGCTGCTTTTCATCCATAAATATGTAAAATGCATGCTGTCACTCGCCCAACAAGATTCATaGCCTGGTGAGCCGGGTACT | + |
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Preference number: 4 (lower is better) Translates to: RQGQLLFIHKYVKCMLSLAQQDS*PGEPGT Trigger: AGTACCCGGCTCACCAGGCCATGAATCTTGTTGGGC...GAGTGACAGCATGCATTTTACATATTTATGGATGAAAAGCAGCTGTCCTTGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR CCA 90 bp | AATGCTAGCGTTTTACAGACTTGGCCCAAACAGCATAACCCAAAACTGCAAGAACCCTTCGATGCTCTGTaGCCCAACAAGATTCATGGC | + |
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Preference number: 4 (lower is better) Translates to: NASVLQTWPKQHNPKLQEPFDAL*PNKIHG Trigger: GCCATGAATCTTGTTGGGCCACAGAGCATCGAAGGG...TTCTTGCAGTTTTGGGTTATGCTGTTTGGGCCAAGTCTGTAAAACGCTAGCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR CCA 90 bp | AAGCAGCAGAGTGAGATGTGTCACCCCCTCTGCTTGAGTACAAACTTCTTTATTCCACTTGCCCAAACCTaGGTAGTCATGTTCTGGATC | + |
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Preference number: 4 (lower is better) Translates to: KQQSEMCHPLCLSTNFFIPLAQT*VVMFWI Trigger: GATCCAGAACATGACTACCCAGGTTTGGGCAAGTGG...AATAAAGAAGTTTGTACTCAAGCAGAGGGGGTGACACATCTCACTCTGCTGCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR TCA 90 bp | AGGCAAGGACAGCTGCTTTTCATCCATAAATATGTAAAATGCATGCTGTCACTCTGCTCCATAACCCCATaGAGCAGCCTCTGGATGTCT | + |
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Preference number: 4 (lower is better) Translates to: RQGQLLFIHKYVKCMLSLCSITP*SSLWMS Trigger: AGACATCCAGAGGCTGCTTCATGGGGTTATGGAGCA...GAGTGACAGCATGCATTTTACATATTTATGGATGAAAAGCAGCTGTCCTTGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR CCA 90 bp | GATGTGTCACCCCCTCTGCTTGAGTACAAACTTCTTTATTGGTGTGTAACAAGGGGATCAAAAAGGTGCTaGTCTAACTGGAATTCTCGG | + |
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Preference number: 4 (lower is better) Translates to: DVSPPLLEYKLLYWCVTRGSKRC*SNWNSR Trigger: CCGAGAATTCCAGTTAGACCAGCACCTTTTTGATCC...CCTTGTTACACACCAATAAAGAAGTTTGTACTCAAGCAGAGGGGGTGACACATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR TCA 90 bp | CATAAATATGTAAAATGCATGCTGTCACTCACGGGCTCTATGAACATGCACATATTCCTTCTCCTCTTCTaGGAAGTGGGGGACAGATTT | + |
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Preference number: 4 (lower is better) Translates to: HKYVKCMLSLTGSMNMHIFLLLF*EVGDRF Trigger: AAATCTGTCCCCCACTTCTCAGAAGAGGAGAAGGAA...TATGTGCATGTTCATAGAGCCCGTGAGTGACAGCATGCATTTTACATATTTATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR GCA 90 bp | CTTTTCATCCATAAATATGTAAAATGCATGCTGTCACTCACGGGCTCTATGAACCTATGTTGGGGATGTTaGCAAAAGGACCCAGATGCT | + |
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Preference number: 4 (lower is better) Translates to: LFIHKYVKCMLSLTGSMNLCWGC*QKDPDA Trigger: AGCATCTGGGTCCTTTTGGCAACATCCCCAACATAG...GTTCATAGAGCCCGTGAGTGACAGCATGCATTTTACATATTTATGGATGAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR GCA 90 bp | AAGGCCCAAGGGCTAGATACACTACATAATCAAAATCAAATGCTAGCGTTTTACGTCACCAGTCAACTCTaGCACTATGTTGGGGATGTT | + |
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Preference number: 4 (lower is better) Translates to: KAQGLDTLHNQNQMLAFYVTSQL*HYVGDV Trigger: AACATCCCCAACATAGTGGCAGAGTTGACTGGTGAC...GTAAAACGCTAGCATTTGATTTTGATTATGTAGTGTATCTAGCCCTTGGGCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR CCA 90 bp | AGACTTGGCCCAAACAGCATAACCCAAAACTGCAAGAAATCTGAGTATTTCATAACTCTGCCACTATGTTaGGGATGTTGCCAAAAGGAC | + |
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Preference number: 4 (lower is better) Translates to: RLGPNSITQNCKKSEYFITLPLC*GCCQKD Trigger: GTCCTTTTGGCAACATCCCCAACATAGTGGCAGAGT...TATGAAATACTCAGATTTCTTGCAGTTTTGGGTTATGCTGTTTGGGCCAAGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR CCA 90 bp | AAGGCCCAAGGGCTAGATACACTACATAATCAAAATCAAATGCTAGCGTTTTACTCCTCTTCTGAGAAGTaGGGGACAGATTTCTTTGCC | + |
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Preference number: 4 (lower is better) Translates to: KAQGLDTLHNQNQMLAFYSSSEK*GTDFFA Trigger: GGCAAAGAAATCTGTCCCCCACTTCTCAGAAGAGGA...GTAAAACGCTAGCATTTGATTTTGATTATGTAGTGTATCTAGCCCTTGGGCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR GCA 90 bp | CATAAATATGTAAAATGCATGCTGTCACTCACGGGCTCTATGAACATGCACATAGTTTCTTGTTCCACTTaGCCAAACCTGGGTAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: HKYVKCMLSLTGSMNMHIVSCST*PNLGSH Trigger: ATGACTACCCAGGTTTGGGCAAGTGGAACAAGAAAC...TATGTGCATGTTCATAGAGCCCGTGAGTGACAGCATGCATTTTACATATTTATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR CCA 90 bp | AAGGCCCAAGGGCTAGATACACTACATAATCAAAATCAAATGCTAGCGTTTTACTGGGTAGTCATGTTCTaGATCAAAAAGGTGCTGGTC | + |
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Preference number: 4 (lower is better) Translates to: KAQGLDTLHNQNQMLAFYWVVMF*IKKVLV Trigger: GACCAGCACCTTTTTGATCCAGAACATGACTACCCA...GTAAAACGCTAGCATTTGATTTTGATTATGTAGTGTATCTAGCCCTTGGGCCTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS TCA 90 bp | GCTCCCCCTTCGATGCTCTGTGGCCCAACAAGATTCATGGCCTGGTaGGCCGGGTACTCCACGCGTGGCCTGGCAATGCCCAGCTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: APPSMLCGPTRFMAW*AGYSTRGLAMPSCS Trigger: GGAGCAGCTGGGCATTGCCAGGCCACGCGTGGAGTACCCGGCTCACCAGGCCATGAATCTTGTTGGGCCACAGAGCATCGAAGGGGGAGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS CCA 90 bp | CCTCGTGAGCTCCCCCTTCGATGCTCTGTGGCCCAACAAGATTCATaGCCTGGTGAGCCGGGTACTCCACGCGTGGCCTGGCAATGCCCA | + |
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Preference number: 5 (lower is better) Translates to: PRELPLRCSVAQQDS*PGEPGTPRVAWQCP Trigger: TGGGCATTGCCAGGCCACGCGTGGAGTACCCGGCTCACCAGGCCATGAATCTTGTTGGGCCACAGAGCATCGAAGGGGGAGCTCACGAGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS CCA 90 bp | TGGCCCAACAAGATTCATGGCCTGGTGAGCCGGGTACTCCACGCGTaGCCTGGCAATGCCCAGCTGCTCCATAACCCCATGAAGCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: WPNKIHGLVSRVLHA*PGNAQLLHNPMKQP Trigger: AGGCTGCTTCATGGGGTTATGGAGCAGCTGGGCATTGCCAGGCCACGCGTGGAGTACCCGGCTCACCAGGCCATGAATCTTGTTGGGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS CCA 90 bp | ACCCAGATGCTGAAGACCCTCGTGAGCTCCCCCTTCGATGCTCTGTaGCCCAACAAGATTCATGGCCTGGTGAGCCGGGTACTCCACGCG | + |
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Preference number: 5 (lower is better) Translates to: TQMLKTLVSSPFDAL*PNKIHGLVSRVLHA Trigger: CGCGTGGAGTACCCGGCTCACCAGGCCATGAATCTTGTTGGGCCACAGAGCATCGAAGGGGGAGCTCACGAGGGTCTTCAGCATCTGGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS TCA 90 bp | CAGCTGCTCCATAACCCCATGAAGCAGCCTCTGGATGTCTGTCTCTaGGACCCGGTCAGGGGTCCGTGGACTATAAGCGAATGCTGGATT | + |
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Preference number: 5 (lower is better) Translates to: QLLHNPMKQPLDVCL*DPVRGPWTISECWI Trigger: AATCCAGCATTCGCTTATAGTCCACGGACCCCTGACCGGGTCTCAGAGACAGACATCCAGAGGCTGCTTCATGGGGTTATGGAGCAGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR CAA 90 bp | TGTAGCAGAAAGCACAGGCATTGGTATGGAGGCAAGGACAGCTGCTTTTCATCCAAGTCCTTAGGAATGTaGTCACCAGTCAACTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: CSRKHRHWYGGKDSCFSSKSLGM*SPVNSA Trigger: GGCAGAGTTGACTGGTGACAACATTCCTAAGGACTT...GGATGAAAAGCAGCTGTCCTTGCCTCCATACCAATGCCTGTGCTTTCTGCTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS GCA 90 bp | TTGATCCTCACTGAAGTCCTTAGGAATGTTGTCACCAGTCAACTCTaGCACTATGTTGGGGATGTTGCCAAAAGGACCCAGATGCTGAAG | + |
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Preference number: 5 (lower is better) Translates to: LILTEVLRNVVTSQL*HYVGDVAKRTQMLK Trigger: CTTCAGCATCTGGGTCCTTTTGGCAACATCCCCAACATAGTGGCAGAGTTGACTGGTGACAACATTCCTAAGGACTTCAGTGAGGATCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR CAA 90 bp | GATGTGTCACCCCCTCTGCTTGAGTACAAACTTCTTTATTGGTGTGTAACAAGGACTATGTTGGGGATGTaGCCAAAAGGACCCAGATGC | + |
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Preference number: 5 (lower is better) Translates to: DVSPPLLEYKLLYWCVTRTMLGM*PKGPRC Trigger: GCATCTGGGTCCTTTTGGCAACATCCCCAACATAGT...CCTTGTTACACACCAATAAAGAAGTTTGTACTCAAGCAGAGGGGGTGACACATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR CAA 90 bp | GGCCCAAACAGCATAACCCAAAACTGCAAGAAATCTGAGTATTTCATATCCGTGGGGGGACAGATTTCTTaGCCACAACATTGTCCAACC | + |
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Preference number: 5 (lower is better) Translates to: GPNSITQNCKKSEYFISVGGQIS*PQHCPT Trigger: GGTTGGACAATGTTGTGGCAAAGAAATCTGTCCCCC...CACGGATATGAAATACTCAGATTTCTTGCAGTTTTGGGTTATGCTGTTTGGGCC 46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR CAA 90 bp | AGACTTGGCCCAAACAGCATAACCCAAAACTGCAAGAAATCTGAGTATTTCATAAGGGTCTGGGTAGCCTaGATCCTCACTGAAGTCCTT | + |
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Preference number: 5 (lower is better) Translates to: RLGPNSITQNCKKSEYFIRVWVA*ILTEVL Trigger: AAGGACTTCAGTGAGGATCAAGGCTACCCAGACCCT...TATGAAATACTCAGATTTCTTGCAGTTTTGGGTTATGCTGTTTGGGCCAAGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS-3UTR CAA 90 bp | GATGTGTCACCCCCTCTGCTTGAGTACAAACTTCTTTATTGGTGTGTAACAAGGTTCTTTGCCACAACATaGTCCAACCTCTTTCCTTGT | + |
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Preference number: 5 (lower is better) Translates to: DVSPPLLEYKLLYWCVTRFFATT*SNLFPC Trigger: ACAAGGAAAGAGGTTGGACAATGTTGTGGCAAAGAA...CCTTGTTACACACCAATAAAGAAGTTTGTACTCAAGCAGAGGGGGTGACACATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS CCA 72 bp | CTCCCCCTTCGATGCTCTGTGGCCCAACAAGATTCATaGCCTGGTGAGCCGGGTACTCCACGCGTGGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: LPLRCSVAQQDS*PGEPGTPRVAW Trigger: CCAGGCCACGCGTGGAGTACCCGGCTCACCAGGCCATGAATCTTGTTGGGCCACAGAGCATCGAAGGGGGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS TCA 72 bp | TCGATGCTCTGTGGCCCAACAAGATTCATGGCCTGGTaGGCCGGGTACTCCACGCGTGGCCTGGCAATGCCC | + |
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Preference number: 6 (lower is better) Translates to: SMLCGPTRFMAW*AGYSTRGLAMP Trigger: GGGCATTGCCAGGCCACGCGTGGAGTACCCGGCTCACCAGGCCATGAATCTTGTTGGGCCACAGAGCATCGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS CCA 72 bp | AAGATTCATGGCCTGGTGAGCCGGGTACTCCACGCGTaGCCTGGCAATGCCCAGCTGCTCCATAACCCCATG | + |
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Preference number: 6 (lower is better) Translates to: KIHGLVSRVLHA*PGNAQLLHNPM Trigger: CATGGGGTTATGGAGCAGCTGGGCATTGCCAGGCCACGCGTGGAGTACCCGGCTCACCAGGCCATGAATCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS CCA 72 bp | CTGAAGACCCTCGTGAGCTCCCCCTTCGATGCTCTGTaGCCCAACAAGATTCATGGCCTGGTGAGCCGGGTA | + |
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Preference number: 6 (lower is better) Translates to: LKTLVSSPFDAL*PNKIHGLVSRV Trigger: TACCCGGCTCACCAGGCCATGAATCTTGTTGGGCCACAGAGCATCGAAGGGGGAGCTCACGAGGGTCTTCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS GCA 72 bp | CCAGATGCTGAAGACCCTCGTGAGCTCCCCCTTCGATaGTCTGTGGCCCAACAAGATTCATGGCCTGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: PDAEDPRELPLR*SVAQQDSWPGE Trigger: CTCACCAGGCCATGAATCTTGTTGGGCCACAGAGCATCGAAGGGGGAGCTCACGAGGGTCTTCAGCATCTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS TCA 72 bp | CATAACCCCATGAAGCAGCCTCTGGATGTCTGTCTCTaGGACCCGGTCAGGGGTCCGTGGACTATAAGCGAA | + |
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Preference number: 6 (lower is better) Translates to: HNPMKQPLDVCL*DPVRGPWTISE Trigger: TTCGCTTATAGTCCACGGACCCCTGACCGGGTCTCAGAGACAGACATCCAGAGGCTGCTTCATGGGGTTATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS CCA 72 bp | TCCATCATCAGCAGTTTTCCCAAGAGGACAGGGATTTaGAGGGTCTGGGTAGCCTTGATCCTCACTGAAGTC | + |
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Preference number: 6 (lower is better) Translates to: SIISSFPKRTGI*RVWVALILTEV Trigger: GACTTCAGTGAGGATCAAGGCTACCCAGACCCTCCAAATCCCTGTCCTCTTGGGAAAACTGCTGATGATGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS GCA 72 bp | ACTGAAGTCCTTAGGAATGTTGTCACCAGTCAACTCTaGCACTATGTTGGGGATGTTGCCAAAAGGACCCAG | + |
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Preference number: 6 (lower is better) Translates to: TEVLRNVVTSQL*HYVGDVAKRTQ Trigger: CTGGGTCCTTTTGGCAACATCCCCAACATAGTGGCAGAGTTGACTGGTGACAACATTCCTAAGGACTTCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS CCA 72 bp | CTCATAAAGGAGTTTCTTGTTCCACTTGCCCAAACCTaGGTAGTCATGTTCTGGATCAAAAAGGTGCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: LIKEFLVPLAQT*VVMFWIKKVLV Trigger: GACCAGCACCTTTTTGATCCAGAACATGACTACCCAGGTTTGGGCAAGTGGAACAAGAAACTCCTTTATGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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| CDS CAA 72 bp | CCTTCTCCTCTTCTGAGAAGTGGGGGACAGATTTCTTaGCCACAACATTGTCCAACCTCTTTCCTTGTAGAT | + |
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Preference number: 6 (lower is better) Translates to: PSPLLRSGGQIS*PQHCPTSFLVD Trigger: ATCTACAAGGAAAGAGGTTGGACAATGTTGTGGCAAAGAAATCTGTCCCCCACTTCTCAGAAGAGGAGAAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024005.8 |
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