Pregenerated sensors for SCFD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020952Ensembl transcript IDs: ENSMUST00000021335.7, ENSMUST00000218138.2, ENSMUST00000219434.2
Found 120 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTTACGGGTAAGATGGGTATGGGGACACACGTTCATGTGCACTTGTaGGCAGCATTAAGAAGGTATTCCAGGTCCACCTTCCTGGGAAGC | + |
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Preference number: 1 (lower is better) Translates to: FTGKMGMGTHVHVHL*AALRRYSRSTFLGS Trigger: GCTTCCCAGGAAGGTGGACCTGGAATACCTTCTTAATGCTGCTCACAAGTGCACATGAACGTGTGTCCCCATACCCATCTTACCCGTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218138.2 |
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| 3UTR TCA 90 bp | GTACTTTCTGCATCTTTAAGCAGCATATACACTTCTCCTTTAGAGTaGTTCACATGGTTGTACAGAGTGGAAAGCAAGTCTCCGAGTCCT | + |
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Preference number: 1 (lower is better) Translates to: VLSASLSSIYTSPLE*FTWLYRVESKSPSP Trigger: AGGACTCGGAGACTTGCTTTCCACTCTGTACAACCATGTGAATCACTCTAAAGGAGAAGTGTATATGCTGCTTAAAGATGCAGAAAGTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR TCA 90 bp | CACAAAGACAATGGCCTCTTGGAATGGACTTTTGTTCCTAGGAACTaGGCTGCAATAAAGAGAAACTGCACTGAAAATTTCATCCTTGGC | + |
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Preference number: 1 (lower is better) Translates to: HKDNGLLEWTFVPRN*AAIKRNCTENFILG Trigger: GCCAAGGATGAAATTTTCAGTGCAGTTTCTCTTTATTGCAGCTCAGTTCCTAGGAACAAAAGTCCATTCCAAGAGGCCATTGTCTTTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000218138.2 |
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| 3UTR GCA 90 bp | TCAAGGTATCAGCTTAACAGAATTATGCAGGCTGGAGTACCACACTaGACAATGTCTATTATCTATGGATTCTTTTCTAGTGTTTGGGCT | + |
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Preference number: 1 (lower is better) Translates to: SRYQLNRIMQAGVPH*TMSIIYGFFSSVWA Trigger: AGCCCAAACACTAGAAAAGAATCCATAGATAATAGACATTGTGCAGTGTGGTACTCCAGCCTGCATAATTCTGTTAAGCTGATACCTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR-3UTR CCA 90 bp | CAGATTGCAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACACCAGGTCCACCTTCCTaGGAAGCAGGGGGTTCTTCA | + |
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Preference number: 2 (lower is better) Translates to: QIAVRAWPWRRTYLALFTPGPPS*EAGGSS Trigger: TGAAGAACCCCCTGCTTCCCAGGAAGGTGGACCTGG...TGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTGCAATCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000218138.2 |
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| 3UTR CAA 90 bp | TTGTACAGAGTGGAAAGCAAGTCTCCGAGTCCTGCCATTTGGCCATaGGGTTTAACCTTGGATGCCTTGAGAACTAGTAACACCAAATGC | + |
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Preference number: 2 (lower is better) Translates to: LYRVESKSPSPAIWP*GLTLDALRTSNTKC Trigger: GCATTTGGTGTTACTAGTTCTCAAGGCATCCAAGGTTAAACCCAATGGCCAAATGGCAGGACTCGGAGACTTGCTTTCCACTCTGTACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR-3UTR CCA 90 bp | AGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGTTAGGGCATGGCCATaGAGAAGGACATATCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: RAWPWRRTYLALFTSIQTVRAWP*RRTYLA Trigger: AGCCAGATATGTCCTTCTCCATGGCCATGCCCTAAC...AGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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| 3UTR-3UTR CCA 90 bp | CAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCATTGCAGTTAGGGCATaGCCATGGAGAAGGACATAT | + |
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Preference number: 2 (lower is better) Translates to: QLGHGHGEGHIWLFLHLSIAVRA*PWRRTY Trigger: ATATGTCCTTCTCCATGGCCATGCCCTAACTGCAAT...GGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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| 3UTR-3UTR GCA 90 bp | TTAACAGAGATGCAACACAAAGACGTAGAGACACTAACAAAAACACTAACAAACGCCACGTGGTCCTCCTaGGCTCTGAGAGAACAAGCA | + |
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Preference number: 2 (lower is better) Translates to: LTEMQHKDVETLTKTLTNATWSS*ALREQA Trigger: TGCTTGTTCTCTCAGAGCGCAGGAGGACCACGTGGC...GTTTGTTAGTGTTTTTGTTAGTGTCTCTACGTCTTTGTGTTGCATCTCTGTTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR-3UTR CCA 90 bp | CAAGATTCTGATATTCAATATAGTTGCCTCCTCCTACCACAAAGACAATGGCCTGTTAGGGCATGGCCATaGAGAAGGACATATCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: QDSDIQYSCLLLPQRQWPVRAWP*RRTYLA Trigger: AGCCAGATATGTCCTTCTCCATGGCCATGCCCTAAC...AGGCCATTGTCTTTGTGGTAGGAGGAGGCAACTATATTGAATATCAGAATCTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218138.2 |
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| 3UTR-3UTR CCA 90 bp | ATACACTTCTCCTTTAGAGTGATTCACATGGTTGTACAGAGTGGAAAGCAAGTCCCGAGTCCTGCCATTTaGCCATTGGGTTTAACCTTG | + |
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Preference number: 2 (lower is better) Translates to: IHFSFRVIHMVVQSGKQVPSPAI*PLGLTL Trigger: CAAGGTTAAACCCAATGGCCAAATGGCAGGACTCGG...GACTTGCTTTCCACTCTGTACAACCATGTGAATCACTCTAAAGGAGAAGTGTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR-3UTR TCA 90 bp | CAGATTGCAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATACATCTATCCAAACTaGTTACCCCATTGTGGTTCT | + |
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Preference number: 2 (lower is better) Translates to: QIAVRAWPWRRTYLALFTYIYPN*LPHCGS Trigger: AGAACCACAATGGGGTAATCAGTTTGGATAGATGTA...TGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTGCAATCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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| 3UTR-3UTR GCA 90 bp | GCTGGAGTACCACACTGCACAATGTCTATTATCTATGGATTCTTTTCTAGTGTTACAGTACTGAGACACTaGAGGCAGACAGCAGCACAT | + |
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Preference number: 2 (lower is better) Translates to: AGVPHCTMSIIYGFFSSVTVLRH*RQTAAH Trigger: ATGTGCTGCTGTCTGCCTGCAGTGTCTCAGTACTGT...AACACTAGAAAAGAATCCATAGATAATAGACATTGTGCAGTGTGGTACTCCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR-3UTR CCA 90 bp | AATTGGGTGGAACAGTTGTTTTGCCATTTAACAGAGATGCAACACAAAGACGTATGCACTGCCCATGGTTaGACACATGGCTGTGTGTTA | + |
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Preference number: 2 (lower is better) Translates to: NWVEQLFCHLTEMQHKDVCTAHG*THGCVL Trigger: TAACACACAGCCATGTGTCCAACCATGGGCAGTGCA...TACGTCTTTGTGTTGCATCTCTGTTAAATGGCAAAACAACTGTTCCACCCAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR-3UTR CCA 90 bp | GATATTCAATATAGTTGCCTCCTCCTACCACAAAGACAATGGCCTCTTGGAATGGGAGAAGGACATATCTaGCTCTTTTTACATCTATCC | + |
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Preference number: 2 (lower is better) Translates to: DIQYSCLLLPQRQWPLGMGEGHI*LFLHLS Trigger: GGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCC...CATTCCAAGAGGCCATTGTCTTTGTGGTAGGAGGAGGCAACTATATTGAATATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000218138.2 |
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| 3UTR-3UTR GCA 90 bp | AATTGGGTGGAACAGTTGTTTTGCCATTTAACAGAGATGCAACACAAAGACGTACTGGTCAAAACTCACTaGTGTATAGCCACTGAACTT | + |
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Preference number: 2 (lower is better) Translates to: NWVEQLFCHLTEMQHKDVLVKTH*CIATEL Trigger: AAGTTCAGTGGCTATACAGCAGTGAGTTTTGACCAG...TACGTCTTTGTGTTGCATCTCTGTTAAATGGCAAAACAACTGTTCCACCCAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR CAA 90 bp | TTATCTCTTCAGGAGATAATGACTTCACATAATTGGGTGGAACAGTaGTTTTGCCATTTAACAGAGATGCAACACAAAGACGTAGAGACA | + |
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Preference number: 2 (lower is better) Translates to: LSLQEIMTSHNWVEQ*FCHLTEMQHKDVET Trigger: TGTCTCTACGTCTTTGTGTTGCATCTCTGTTAAATGGCAAAACAACTGTTCCACCCAATTATGTGAAGTCATTATCTCCTGAAGAGATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR-3UTR TCA 90 bp | AACAAGATTCTGATATTCAATATAGTTGCCTCCTCCTACCACAAAGACAATGGCAAAGAGAAACTGCACTaGAAATTTCATCCTTGGCTT | + |
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Preference number: 2 (lower is better) Translates to: NKILIFNIVASSYHKDNGKEKLH*KFHPWL Trigger: AAGCCAAGGATGAAATTTTCAGTGCAGTTTCTCTTT...GCCATTGTCTTTGTGGTAGGAGGAGGCAACTATATTGAATATCAGAATCTTGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218138.2 |
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| 3UTR GCA 72 bp | ATGAGCACAGCAGACGTAGAGACAGTACTGAGACACTaGAGGCAGACAGCAGCACATTCCAACGCTAAGCAG | + |
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Preference number: 3 (lower is better) Translates to: MSTADVETVLRH*RQTAAHSNAKQ Trigger: CTGCTTAGCGTTGGAATGTGCTGCTGTCTGCCTGCAGTGTCTCAGTACTGTCTCTACGTCTGCTGTGCTCAT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR-3UTR CAA 90 bp | CAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCACTGATTCTGACAGATaGCAGTTAGGGCATGGCCAT | + |
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Preference number: 3 (lower is better) Translates to: QLGHGHGEGHIWLFLHLSTDSDR*QLGHGH Trigger: ATGGCCATGCCCTAACTGCAATCTGTCAGAATCAGT...GGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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| 3UTR CCA 72 bp | TTTCATCCTTGGCTTCTTTTACGGGTAAGATGGGTATaGGGACACACGTTCATGTGCACTTGTGAGCAGCAT | + |
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Preference number: 3 (lower is better) Translates to: FHPWLLLRVRWV*GHTFMCTCEQH Trigger: ATGCTGCTCACAAGTGCACATGAACGTGTGTCCCCATACCCATCTTACCCGTAAAAGAAGCCAAGGATGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218138.2 |
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| 3UTR-3UTR CAA 90 bp | AATTGGGTGGAACAGTTGTTTTGCCATTTAACAGAGATGCAACACAAAGACGTACTGCACTGCCCATGGTaGGACACATGGCTGTGTGTT | + |
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Preference number: 3 (lower is better) Translates to: NWVEQLFCHLTEMQHKDVLHCPW*DTWLCV Trigger: AACACACAGCCATGTGTCCAACCATGGGCAGTGCAG...TACGTCTTTGTGTTGCATCTCTGTTAAATGGCAAAACAACTGTTCCACCCAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR CCA 72 bp | TTGCAGTTAGGGCATGGCCATGGAGAAGGACATATCTaGCTCTTTTTACATCTATCCAAACTGATTACCCCA | + |
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Preference number: 3 (lower is better) Translates to: LQLGHGHGEGHI*LFLHLSKLITP Trigger: TGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTGCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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| 3UTR-3UTR CAA 90 bp | CAAGATTCTGATATTCAATATAGTTGCCTCCTCCTACCACAAAGACAATGGCCTACTGATTCTGACAGATaGCAGTTAGGGCATGGCCAT | + |
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Preference number: 3 (lower is better) Translates to: QDSDIQYSCLLLPQRQWPTDSDR*QLGHGH Trigger: ATGGCCATGCCCTAACTGCAATCTGTCAGAATCAGT...AGGCCATTGTCTTTGTGGTAGGAGGAGGCAACTATATTGAATATCAGAATCTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218138.2 |
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| 3UTR CCA 72 bp | ATTTTAGGCAGTACCATATCAAAAAGAAGTTCTACATaGGCACTGAGGTACATAATCTCAGGGTCGGGAGGT | + |
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Preference number: 3 (lower is better) Translates to: ILGSTISKRSST*ALRYIISGSGG Trigger: ACCTCCCGACCCTGAGATTATGTACCTCAGTGCCCATGTAGAACTTCTTTTTGATATGGTACTGCCTAAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR TCA 72 bp | CAGGGTCGGGAGGTGAAGTTAGGAAGACAAAGAGTTTaGGGCTGTTATGACTTGAGATGTAATATGATTCTA | + |
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Preference number: 3 (lower is better) Translates to: QGREVKLGRQRV*GCYDLRCNMIL Trigger: TAGAATCATATTACATCTCAAGTCATAACAGCCTCAAACTCTTTGTCTTCCTAACTTCACCTCCCGACCCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR-3UTR CAA 90 bp | CATAATTGGGTGGAACAGTTGTTTTGCCATTTAACAGAGATGCAACACAAAGACCCATTGGGTTTAACCTaGGATGCCTTGAGAACTAGT | + |
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Preference number: 3 (lower is better) Translates to: HNWVEQLFCHLTEMQHKDPLGLT*DALRTS Trigger: ACTAGTTCTCAAGGCATCCAAGGTTAAACCCAATGG...GTCTTTGTGTTGCATCTCTGTTAAATGGCAAAACAACTGTTCCACCCAATTATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR-3UTR CAA 90 bp | AATTGGGTGGAACAGTTGTTTTGCCATTTAACAGAGATGCAACACAAAGACGTATTAACCTTGGATGCCTaGAGAACTAGTAACACCAAA | + |
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Preference number: 3 (lower is better) Translates to: NWVEQLFCHLTEMQHKDVLTLDA*RTSNTK Trigger: TTTGGTGTTACTAGTTCTCAAGGCATCCAAGGTTAA...TACGTCTTTGTGTTGCATCTCTGTTAAATGGCAAAACAACTGTTCCACCCAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR GCA 72 bp | ATACTGGCAACTGATTATATTCTGGTCAAAACTCACTaGTGTATAGCCACTGAACTTTGGTCAACGATAACA | + |
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Preference number: 3 (lower is better) Translates to: ILATDYILVKTH*CIATELWSTIT Trigger: TGTTATCGTTGACCAAAGTTCAGTGGCTATACAGCAGTGAGTTTTGACCAGAATATAATCAGTTGCCAGTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR GCA 72 bp | CAGCTTAACAGAATTATGCAGGCTGGAGTACCACACTaGACAATGTCTATTATCTATGGATTCTTTTCTAGT | + |
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Preference number: 3 (lower is better) Translates to: QLNRIMQAGVPH*TMSIIYGFFSS Trigger: ACTAGAAAAGAATCCATAGATAATAGACATTGTGCAGTGTGGTACTCCAGCCTGCATAATTCTGTTAAGCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| CDS-3UTR CCA 90 bp | CTCCTGCGCTCTGAGAGAACAAGCACAGCCCTGCTGCTCTCTGTAGTCGCACCTCCCGAATGCTGGCCGTaGCCGCCATCTTGCTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: LLRSERTSTALLLSVVAPPECWP*PPSCFP Trigger: TGGGAAGCAAGATGGCGGCCACGGCCAGCATTCGGG...AGGTGCGACTACAGAGAGCAGCAGGGCTGTGCTTGTTCTCTCAGAGCGCAGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| CDS-3UTR GCA 90 bp | AGACGTAGAGACAGTACTGAGACACTGCAGGCAGACAGCAGCACATTCCAACGCTTTGCCTCTCCCGAATaGTGGCCGTGGCCGCCATCT | + |
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Preference number: 4 (lower is better) Translates to: RRRDSTETLQADSSTFQRFASPE*WPWPPS Trigger: AGATGGCGGCCACGGCCAGCATTCGGGAGAGGCAAA...GCGTTGGAATGTGCTGCTGTCTGCCTGCAGTGTCTCAGTACTGTCTCTACGTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| CDS-3UTR TCA 90 bp | GTAGAGACAGTACTGAGACACTGCAGGCAGACAGCAGCACATTCCAACGCTAAGAAGGCCTTTGGAAGCTaGACTGGCCAGTTCCAAGTG | + |
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Preference number: 4 (lower is better) Translates to: VETVLRHCRQTAAHSNAKKAFGS*TGQFQV Trigger: CACTTGGAACTGGCCAGTTCAGCTTCCAAAGGCCTT...CTTAGCGTTGGAATGTGCTGCTGTCTGCCTGCAGTGTCTCAGTACTGTCTCTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| CDS-3UTR GCA 90 bp | GACAGATTGCAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTATTTGCCTCTCCCGAATaGTGGCCGTGGCCGCCATCT | + |
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Preference number: 4 (lower is better) Translates to: DRLQLGHGHGEGHIWLFLFASPE*WPWPPS Trigger: AGATGGCGGCCACGGCCAGCATTCGGGAGAGGCAAA...TAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTGCAATCTGTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
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| CDS-3UTR CCA 90 bp | AGACGTAGAGACAGTACTGAGACACTGCAGGCAGACAGCAGCACATTCCAACGCTGGTCTAGCACCAGCTaGAGAGTTTTCCACTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: RRRDSTETLQADSSTFQRWSSTS*RVFHSC Trigger: ACAGGAGTGGAAAACTCTCCAGCTGGTGCTAGACCA...GCGTTGGAATGTGCTGCTGTCTGCCTGCAGTGTCTCAGTACTGTCTCTACGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| CDS-3UTR CCA 90 bp | CCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCCCCGAATGCTGGCCGTaGCCGCCATCTTGCTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: PWRRTYLALFTSIQTDYPPECWP*PPSCFP Trigger: TGGGAAGCAAGATGGCGGCCACGGCCAGCATTCGGG...GGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGG 51% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
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| CDS-3UTR CCA 90 bp | CTCCTGCGCTCTGAGAGAACAAGCACAGCCCTGCTGCTCTCTGTAGTCGCACCTTTTACTCTGTTTAAGTaGAAATCCAGCACATCGTGT | + |
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Preference number: 4 (lower is better) Translates to: LLRSERTSTALLLSVVAPFTLFK*KSSTSC Trigger: ACACGATGTGCTGGATTTCCACTTAAACAGAGTAAA...AGGTGCGACTACAGAGAGCAGCAGGGCTGTGCTTGTTCTCTCAGAGCGCAGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| CDS-3UTR TCA 90 bp | GCAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCAAGGCCTTTGGAAGCTaGACTGGCCAGTTCCAAGTG | + |
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Preference number: 4 (lower is better) Translates to: AVRAWPWRRTYLALFTSIKAFGS*TGQFQV Trigger: CACTTGGAACTGGCCAGTTCAGCTTCCAAAGGCCTT...GATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
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| CDS-3UTR TCA 90 bp | AGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGTAGCTGGCAGGAGTTaGGGCCATCTTGGCAAAAGC | + |
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Preference number: 4 (lower is better) Translates to: RAWPWRRTYLALFTSIQTVAGRS*GHLGKS Trigger: GCTTTTGCCAAGATGGCCTCAACTCCTGCCAGCTAC...AGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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| CDS-3UTR CCA 90 bp | GTAGAGACAGTACTGAGACACTGCAGGCAGACAGCAGCACATTCCAACGCTAAGCTTGTTTTTCCTCTTTaGTCTAGCACCAGCTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: VETVLRHCRQTAAHSNAKLVFPL*SSTSWR Trigger: TCTCCAGCTGGTGCTAGACCAAAGAGGAAAAACAAG...CTTAGCGTTGGAATGTGCTGCTGTCTGCCTGCAGTGTCTCAGTACTGTCTCTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| CDS-3UTR CCA 90 bp | GTAGAGACAGTACTGAGACACTGCAGGCAGACAGCAGCACATTCCAACGCTAAGTGCGACTTCTGGGAATaGACTTCCTTTATGCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: VETVLRHCRQTAAHSNAKCDFWE*TSFMLL Trigger: CAGAAGCATAAAGGAAGTCCATTCCCAGAAGTCGCA...CTTAGCGTTGGAATGTGCTGCTGTCTGCCTGCAGTGTCTCAGTACTGTCTCTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| 3UTR CAA 72 bp | GTGGAAAGCAAGTCTCCGAGTCCTGCCATTTGGCCATaGGGTTTAACCTTGGATGCCTTGAGAACTAGTAAC | + |
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Preference number: 4 (lower is better) Translates to: VESKSPSPAIWP*GLTLDALRTSN Trigger: GTTACTAGTTCTCAAGGCATCCAAGGTTAAACCCAATGGCCAAATGGCAGGACTCGGAGACTTGCTTTCCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| CDS-3UTR TCA 90 bp | CAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCCTCTTGAGCATCGGATaGTGGGAACAGCACCTAATG | + |
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Preference number: 4 (lower is better) Translates to: QLGHGHGEGHIWLFLHLSLLSIG*WEQHLM Trigger: CATTAGGTGCTGTTCCCATCATCCGATGCTCAAGAG...GGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
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| CDS-3UTR CCA 90 bp | TCATCCTTGGCTTCTTTTACGGGTAAGATGGGTATGGGGACACACGTTCATGTGGGACAGGAGACCCATTaGTTTAGTGGTAGTGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: SSLASFTGKMGMGTHVHVGQETH*FSGSVS Trigger: GGAAACACTACCACTAAACCAATGGGTCTCCTGTCC...CACATGAACGTGTGTCCCCATACCCATCTTACCCGTAAAAGAAGCCAAGGATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000218138.2 |
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| CDS-3UTR TCA 90 bp | CAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCCAAGTGGATCACCGGTaGAAAGGCTGTTTCTTGCAT | + |
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Preference number: 4 (lower is better) Translates to: QLGHGHGEGHIWLFLHLSQVDHR*KGCFLH Trigger: ATGCAAGAAACAGCCTTTTCACCGGTGATCCACTTG...GGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
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| CDS-3UTR TCA 90 bp | GGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTGTGGTTCGTAGCTGGCAGGAGTTaGGGCCATCTTGGCAAAAGC | + |
|
Preference number: 4 (lower is better) Translates to: GHIWLFLHLSKLITPLWFVAGRS*GHLGKS Trigger: GCTTTTGCCAAGATGGCCTCAACTCCTGCCAGCTAC...GAACCACAATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
||
| CDS-3UTR TCA 90 bp | TGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACGTGATCCTGTATTCATaGCTCGGGACAGGAGACCCA | + |
|
Preference number: 4 (lower is better) Translates to: WPWRRTYLALFTSIQTDYVILYS*LGTGDP Trigger: TGGGTCTCCTGTCCCGAGTCATGAATACAGGATCAC...GTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
||
| CDS-3UTR TCA 90 bp | GAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTGTGGGTGATCCTGTATTCATaGCTCGGGACAGGAGACCCA | + |
|
Preference number: 4 (lower is better) Translates to: EGHIWLFLHLSKLITPLWVILYS*LGTGDP Trigger: TGGGTCTCCTGTCCCGAGTCATGAATACAGGATCAC...CCACAATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
||
| CDS-3UTR TCA 90 bp | GAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTGTGGTATCAGAAAGCATGCTaGTGGCCCCTTCATCCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: EGHIWLFLHLSKLITPLWYQKAC*WPLHPL Trigger: GAGAGGATGAAGGGGCCATCAGCATGCTTTCTGATA...CCACAATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR GCA 90 bp | CCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCGAGTGCAAAAGGAGATaGAGAGTGATGCCCATGTCT | + |
|
Preference number: 4 (lower is better) Translates to: PWRRTYLALFTSIQTDYPECKRR*RVMPMS Trigger: AGACATGGGCATCACTCTGCATCTCCTTTTGCACTC...GGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR GCA 90 bp | TTGCAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTAGGACGGTGCTTGCTGTaGGCTTATGTAATAGATAAG | + |
|
Preference number: 4 (lower is better) Translates to: LQLGHGHGEGHIWLFLHLGRCLL*AYVIDK Trigger: CTTATCTATTACATAAGCGCACAGCAAGCACCGTCC...TAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTGCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
||
| CDS-3UTR CCA 90 bp | GGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTGTGGTTCTGGTCTAGCACCAGCTaGAGAGTTTTCCACTCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: GHIWLFLHLSKLITPLWFWSSTS*RVFHSC Trigger: ACAGGAGTGGAAAACTCTCCAGCTGGTGCTAGACCA...GAACCACAATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR CCA 90 bp | AGATTGCAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTTGTTTTTCCTCTTTaGTCTAGCACCAGCTGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: RLQLGHGHGEGHIWLFLHLVFPL*SSTSWR Trigger: TCTCCAGCTGGTGCTAGACCAAAGAGGAAAAACAAG...ATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTGCAATCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR CCA 90 bp | GGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTGTGGTTCGAGTTGAGGCCATCTTaGCAAAAGCCTTCCACTGCT | + |
|
Preference number: 4 (lower is better) Translates to: GHIWLFLHLSKLITPLWFELRPS*QKPSTA Trigger: AGCAGTGGAAGGCTTTTGCCAAGATGGCCTCAACTC...GAACCACAATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
||
| CDS-3UTR TCA 90 bp | CATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCAAAAGGAGATGCAGAGTaGTGCCCATGTCTCTCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: HGEGHIWLFLHLSKLITPKGDAE*CPCLSV Trigger: AACTGAGAGACATGGGCATCACTCTGCATCTCCTTT...TGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR TCA 90 bp | GAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTGTGGTGCTCTTCAGTCGTTTaGCCTCATCTTCTTGTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: EGHIWLFLHLSKLITPLWCSSVV*PHLLVL Trigger: GAGCACAAGAAGATGAGGTCAAACGACTGAAGAGCA...CCACAATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR TCA 90 bp | GCTGGAGTACCACACTGCACAATGTCTATTATCTATGGATTCTTTTCTAGTGTTTATCAGAAAGCATGCTaGTGGCCCCTTCATCCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: AGVPHCTMSIIYGFFSSVYQKAC*WPLHPL Trigger: GAGAGGATGAAGGGGCCATCAGCATGCTTTCTGATA...AACACTAGAAAAGAATCCATAGATAATAGACATTGTGCAGTGTGGTACTCCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
||
| CDS-3UTR GCA 90 bp | CAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAAGCCTTTTTATACTaGTCCAAATCAACCTCGGAC | + |
|
Preference number: 4 (lower is better) Translates to: QLGHGHGEGHIWLFLHLSKAFLY*SKSTSD Trigger: GTCCGAGGTTGATTTGGAGCAGTATAAAAAGGCTTT...GGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
||
| CDS-3UTR GCA 90 bp | TTGCAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTAGTAACAGGTAGATTCTaGTGCTTCAATACCAGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: LQLGHGHGEGHIWLFLHLVTGRF*CFNTRF Trigger: GAACCTGGTATTGAAGCAGCAGAATCTACCTGTTAC...TAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTGCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
||
| CDS-3UTR CCA 90 bp | CATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCACTTTGGAAGCTGAACTaGCCAGTTCCAAGTGGATCA | + |
|
Preference number: 4 (lower is better) Translates to: HGEGHIWLFLHLSKLITPLWKLN*PVPSGS Trigger: TGATCCACTTGGAACTGGCCAGTTCAGCTTCCAAAG...TGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR CCA 90 bp | CAGATTGCAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACAGTTCTAAAACAGCAGTaGCAACATTTGTGTGCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: QIAVRAWPWRRTYLALFTVLKQQ*QHLCAD Trigger: ATCTGCACACAAATGTTGCCACTGCTGTTTTAGAAC...TGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTGCAATCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR CCA 90 bp | TGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTGAGTTGAGGCCATCTTaGCAAAAGCCTTCCACTGCT | + |
|
Preference number: 4 (lower is better) Translates to: WRRTYLALFTSIQTDYPIELRPS*QKPSTA Trigger: AGCAGTGGAAGGCTTTTGCCAAGATGGCCTCAACTC...AATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
||
| CDS-3UTR CCA 90 bp | AGATTGCAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATAATGGCCTCTTGGAATaGACTTTTGTTCCTAGGAAC | + |
|
Preference number: 4 (lower is better) Translates to: RLQLGHGHGEGHIWLFLHNGLLE*TFVPRN Trigger: GTTCCTAGGAACAAAAGTCCATTCCAAGAGGCCATT...ATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTGCAATCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR TCA 90 bp | AATTGGGTGGAACAGTTGTTTTGCCATTTAACAGAGATGCAACACAAAGACGTACAAGTGGATCACCGGTaGAAAGGCTGTTTCTTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: NWVEQLFCHLTEMQHKDVQVDHR*KGCFLH Trigger: ATGCAAGAAACAGCCTTTTCACCGGTGATCCACTTG...TACGTCTTTGTGTTGCATCTCTGTTAAATGGCAAAACAACTGTTCCACCCAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
||
| CDS-3UTR GCA 90 bp | GCTGGAGTACCACACTGCACAATGTCTATTATCTATGGATTCTTTTCTAGTGTTGAGTGCAAAAGGAGATaGAGAGTGATGCCCATGTCT | + |
|
Preference number: 4 (lower is better) Translates to: AGVPHCTMSIIYGFFSSVECKRR*RVMPMS Trigger: AGACATGGGCATCACTCTGCATCTCCTTTTGCACTC...AACACTAGAAAAGAATCCATAGATAATAGACATTGTGCAGTGTGGTACTCCAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
||
| CDS-3UTR GCA 90 bp | AGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTCAGCCATATAAGATATaGTTGCCTTGCTTTGCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: RAWPWRRTYLALFTSIQTQPYKI*LPCFAF Trigger: AAAGGCAAAGCAAGGCAAGCATATCTTATATGGCTG...AGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR CCA 90 bp | GGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTGTGCGACTTCTGGGAATaGACTTCCTTTATGCTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: GEGHIWLFLHLSKLITPLCDFWE*TSFMLL Trigger: CAGAAGCATAAAGGAAGTCCATTCCCAGAAGTCGCA...CAATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR CCA 90 bp | AGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTCTAGTTCTTGTTaGACTGATTCTGCGACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: RAWPWRRTYLALFTSIQTDSSSC*TDSATS Trigger: AGAAGTCGCAGAATCAGTCCAACAAGAACTAGAATC...AGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR CCA 90 bp | TGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTGGACAGGAGACCCATTaGTTTAGTGGTAGTGTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: WRRTYLALFTSIQTDYPIGQETH*FSGSVS Trigger: GGAAACACTACCACTAAACCAATGGGTCTCCTGTCC...AATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
||
| CDS-3UTR TCA 90 bp | TGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTACAGCAGAGGAGAGATaGTATCTTGGCCAAATCTGT | + |
|
Preference number: 4 (lower is better) Translates to: WRRTYLALFTSIQTDYPITAEER*YLGQIC Trigger: ACAGATTTGGCCAAGATATCATCTCTCCTCTGCTGT...AATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR TCA 90 bp | ACTCACTGCTGTATAGCCACTGAACTTTGGTCAACGATAACAAGAAAAATAATACTCTTGAGCATCGGATaGTGGGAACAGCACCTAATG | + |
|
Preference number: 4 (lower is better) Translates to: THCCIATELWSTITRKIILLSIG*WEQHLM Trigger: CATTAGGTGCTGTTCCCATCATCCGATGCTCAAGAG...TATTATTTTTCTTGTTATCGTTGACCAAAGTTCAGTGGCTATACAGCAGTGAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
||
| CDS-3UTR TCA 90 bp | ACTCACTGCTGTATAGCCACTGAACTTTGGTCAACGATAACAAGAAAAATAATACAGTGCACTGACAGCTaGTGTGAGCTTAGCAGTGTT | + |
|
Preference number: 4 (lower is better) Translates to: THCCIATELWSTITRKIIQCTDS*CELSSV Trigger: AACACTGCTAAGCTCACATCAGCTGTCAGTGCACTG...TATTATTTTTCTTGTTATCGTTGACCAAAGTTCAGTGGCTATACAGCAGTGAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
||
| CDS-3UTR GCA 90 bp | CAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAATGGACTTCCTTTATaGTTCTGCCAGAATTTATCA | + |
|
Preference number: 4 (lower is better) Translates to: QLGHGHGEGHIWLFLHLSNGLPL*FCQNLS Trigger: TGATAAATTCTGGCAGAAGCATAAAGGAAGTCCATT...GGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR GCA 90 bp | GGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTGTGGTTCGTAACAGGTAGATTCTaGTGCTTCAATACCAGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: GHIWLFLHLSKLITPLWFVTGRF*CFNTRF Trigger: GAACCTGGTATTGAAGCAGCAGAATCTACCTGTTAC...GAACCACAATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
||
| CDS-3UTR CCA 90 bp | TGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTTGTGTCTGTGATGTCTaGCCTGTTAATGGCACGATA | + |
|
Preference number: 4 (lower is better) Translates to: WRRTYLALFTSIQTDYPICVCDV*PVNGTI Trigger: TATCGTGCCATTAACAGGCCAGACATCACAGACACA...AATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR CCA 90 bp | GGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTGTGGTTCCTACCACAAAGACAATaGCCTCTTGGAATGGACTTT | + |
|
Preference number: 4 (lower is better) Translates to: GHIWLFLHLSKLITPLWFLPQRQ*PLGMDF Trigger: AAAGTCCATTCCAAGAGGCCATTGTCTTTGTGGTAG...GAACCACAATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR TCA 90 bp | TTAACAGAGATGCAACACAAAGACGTAGAGACACTAACAAAAACACTAACAAACTGCTCTTCAGTCGTTTaGCCTCATCTTCTTGTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: LTEMQHKDVETLTKTLTNCSSVV*PHLLVL Trigger: GAGCACAAGAAGATGAGGTCAAACGACTGAAGAGCA...GTTTGTTAGTGTTTTTGTTAGTGTCTCTACGTCTTTGTGTTGCATCTCTGTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
||
| CDS-3UTR TCA 90 bp | TGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACTTTTTGTCCAAGCTGTaGCAGCTGTTTTATGAACTG | + |
|
Preference number: 4 (lower is better) Translates to: WPWRRTYLALFTSIQTDYFLSKL*QLFYEL Trigger: CAGTTCATAAAACAGCTGTCACAGCTTGGACAAAAA...GTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR CCA 90 bp | ATACACTTCTCCTTTAGAGTGATTCACATGGTTGTACAGAGTGGAAAGCAAGTCGATTCTAGTTCTTGTTaGACTGATTCTGCGACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: IHFSFRVIHMVVQSGKQVDSSSC*TDSATS Trigger: AGAAGTCGCAGAATCAGTCCAACAAGAACTAGAATC...GACTTGCTTTCCACTCTGTACAACCATGTGAATCACTCTAAAGGAGAAGTGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
||
| CDS-3UTR TCA 90 bp | GGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTGTGGTTCCAAATCTGTCATAAATaGGTACCTTCCATACTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: GHIWLFLHLSKLITPLWFQICHK*VPSILV Trigger: AACCAGTATGGAAGGTACTCATTTATGACAGATTTG...GAACCACAATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR TCA 90 bp | TTAACAGAGATGCAACACAAAGACGTAGAGACACTAACAAAAACACTAACAAACACAGCAGAGGAGAGATaGTATCTTGGCCAAATCTGT | + |
|
Preference number: 4 (lower is better) Translates to: LTEMQHKDVETLTKTLTNTAEER*YLGQIC Trigger: ACAGATTTGGCCAAGATATCATCTCTCCTCTGCTGT...GTTTGTTAGTGTTTTTGTTAGTGTCTCTACGTCTTTGTGTTGCATCTCTGTTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
||
| CDS-3UTR GCA 90 bp | CATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCACTTCCTTTATGCTTCTaGCAGAATTTATCAACTGGA | + |
|
Preference number: 4 (lower is better) Translates to: HGEGHIWLFLHLSKLITPLPLCF*QNLSTG Trigger: TCCAGTTGATAAATTCTGGCAGAAGCATAAAGGAAG...TGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR GCA 90 bp | TGCCTTGCTTTGCCTTTATGTAGTCAACAAGATTCTGATATTCAATATAGTTGCGGACGGTGCTTGCTGTaGGCTTATGTAATAGATAAG | + |
|
Preference number: 4 (lower is better) Translates to: CLALPLCSQQDSDIQYSCGRCLL*AYVIDK Trigger: CTTATCTATTACATAAGCGCACAGCAAGCACCGTCC...GCAACTATATTGAATATCAGAATCTTGTTGACTACATAAAGGCAAAGCAAGGCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218138.2 |
||
| CDS-3UTR GCA 90 bp | AGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTGTGGTTAAAGCCTTTTTATACTaGTCCAAATCAACCTCGGAC | + |
|
Preference number: 4 (lower is better) Translates to: RTYLALFTSIQTDYPIVVKAFLY*SKSTSD Trigger: GTCCGAGGTTGATTTGGAGCAGTATAAAAAGGCTTT...AACCACAATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
||
| CDS-3UTR GCA 90 bp | GAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTGTGGGATATTCAATATAGTTaGCTCCTCCTACCACAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: EGHIWLFLHLSKLITPLWDIQYS*LLLPQR Trigger: TCTTTGTGGTAGGAGGAGGCAACTATATTGAATATC...CCACAATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| CDS-3UTR CCA 90 bp | ACTCACTGCTGTATAGCCACTGAACTTTGGTCAACGATAACAAGAAAAATAATATGTGTCTGTGATGTCTaGCCTGTTAATGGCACGATA | + |
|
Preference number: 4 (lower is better) Translates to: THCCIATELWSTITRKIICVCDV*PVNGTI Trigger: TATCGTGCCATTAACAGGCCAGACATCACAGACACA...TATTATTTTTCTTGTTATCGTTGACCAAAGTTCAGTGGCTATACAGCAGTGAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
||
| CDS-3UTR CCA 90 bp | TGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTAAGACAATGGCCTCTTaGAATGGACTTTTGTTCCTA | + |
|
Preference number: 4 (lower is better) Translates to: WRRTYLALFTSIQTDYPIKTMAS*NGLLFL Trigger: TAGGAACAAAAGTCCATTCCAAGAGGCCATTGTCTT...AATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
||
| 3UTR CAA 72 bp | CAGGAGATAATGACTTCACATAATTGGGTGGAACAGTaGTTTTGCCATTTAACAGAGATGCAACACAAAGAC | + |
|
Preference number: 4 (lower is better) Translates to: QEIMTSHNWVEQ*FCHLTEMQHKD Trigger: GTCTTTGTGTTGCATCTCTGTTAAATGGCAAAACAACTGTTCCACCCAATTATGTGAAGTCATTATCTCCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
||
| CDS-3UTR TCA 90 bp | GCTGGAGTACCACACTGCACAATGTCTATTATCTATGGATTCTTTTCTAGTGTTCAAATCTGTCATAAATaGGTACCTTCCATACTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: AGVPHCTMSIIYGFFSSVQICHK*VPSILV Trigger: AACCAGTATGGAAGGTACTCATTTATGACAGATTTG...AACACTAGAAAAGAATCCATAGATAATAGACATTGTGCAGTGTGGTACTCCAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
||
| CDS-3UTR GCA 90 bp | ATACACTTCTCCTTTAGAGTGATTCACATGGTTGTACAGAGTGGAAAGCAAGTCAATGGACTTCCTTTATaGTTCTGCCAGAATTTATCA | + |
|
Preference number: 4 (lower is better) Translates to: IHFSFRVIHMVVQSGKQVNGLPL*FCQNLS Trigger: TGATAAATTCTGGCAGAAGCATAAAGGAAGTCCATT...GACTTGCTTTCCACTCTGTACAACCATGTGAATCACTCTAAAGGAGAAGTGTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| CDS-3UTR CCA 90 bp | TGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTTTTACTCTGTTTAAGTaGAAATCCAGCACATCGTGT | + |
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Preference number: 4 (lower is better) Translates to: WRRTYLALFTSIQTDYPIFTLFK*KSSTSC Trigger: ACACGATGTGCTGGATTTCCACTTAAACAGAGTAAA...AATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
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| CDS-3UTR CAA 90 bp | CTCCTGCGCTCTGAGAGAACAAGCACAGCCCTGCTGCTCTCTGTAGTCGCACCTAAAAACCTTGGCAACTaGTGTGACTGCACTAGCGGC | + |
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Preference number: 5 (lower is better) Translates to: LLRSERTSTALLLSVVAPKNLGN*CDCTSG Trigger: GCCGCTAGTGCAGTCACACAAGTTGCCAAGGTTTTT...AGGTGCGACTACAGAGAGCAGCAGGGCTGTGCTTGTTCTCTCAGAGCGCAGGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| CDS-3UTR CAA 90 bp | CAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCCTTCAGAGCCACTGTTaGCCTCTCCCGAATGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: QLGHGHGEGHIWLFLHLSLQSHC*PLPNAG Trigger: GCCAGCATTCGGGAGAGGCAAACAGTGGCTCTGAAG...GGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
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| CDS-3UTR CAA 90 bp | CAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCGGAGTTGAGGCCATCTaGGCAAAAGCCTTCCACTGC | + |
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Preference number: 5 (lower is better) Translates to: QLGHGHGEGHIWLFLHLSGVEAI*AKAFHC Trigger: GCAGTGGAAGGCTTTTGCCAAGATGGCCTCAACTCC...GGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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| CDS-3UTR CAA 90 bp | GACAGATTGCAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTAGGAGTTGAGGCCATCTaGGCAAAAGCCTTCCACTGC | + |
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Preference number: 5 (lower is better) Translates to: DRLQLGHGHGEGHIWLFLGVEAI*AKAFHC Trigger: GCAGTGGAAGGCTTTTGCCAAGATGGCCTCAACTCC...TAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTGCAATCTGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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| CDS CCA 90 bp | TGGAAATCCAGCACATCGTGTACCAGCGCTTGGTATGTCCACGTATaGTGTAAAGGCGTTGCCAGGTCAATGTTTCTGTCAACAAGGACT | + |
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Preference number: 5 (lower is better) Translates to: WKSSTSCTSAWYVHV*CKGVARSMFLSTRT Trigger: AGTCCTTGTTGACAGAAACATTGACCTGGCAACGCCTTTACACCATACGTGGACATACCAAGCGCTGGTACACGATGTGCTGGATTTCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000219434.2 |
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| CDS CCA 90 bp | GTTGCCAGGTCAATGTTTCTGTCAACAAGGACTAATAAAGGCCTTTaGAAGCTGAACTGGCCAGTTCCAAGTGGATCACCGGTGAAAAGG | + |
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Preference number: 5 (lower is better) Translates to: VARSMFLSTRTNKGL*KLNWPVPSGSPVKR Trigger: CCTTTTCACCGGTGATCCACTTGGAACTGGCCAGTTCAGCTTCCAAAGGCCTTTATTAGTCCTTGTTGACAGAAACATTGACCTGGCAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000219434.2 |
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| CDS-3UTR CAA 90 bp | GCTGGAGTACCACACTGCACAATGTCTATTATCTATGGATTCTTTTCTAGTGTTCTTCAGAGCCACTGTTaGCCTCTCCCGAATGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: AGVPHCTMSIIYGFFSSVLQSHC*PLPNAG Trigger: GCCAGCATTCGGGAGAGGCAAACAGTGGCTCTGAAG...AACACTAGAAAAGAATCCATAGATAATAGACATTGTGCAGTGTGGTACTCCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219434.2 |
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| CDS-3UTR CAA 90 bp | GCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATAAAAACCTTGGCAACTaGTGTGACTGCACTAGCGGC | + |
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Preference number: 5 (lower is better) Translates to: AWPWRRTYLALFTSIQTDKNLGN*CDCTSG Trigger: GCCGCTAGTGCAGTCACACAAGTTGCCAAGGTTTTT...ATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
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| CDS-3UTR CAA 90 bp | TGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACATGCTCTTCAGTCGTTaGACCTCATCTTCTTGTGCT | + |
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Preference number: 5 (lower is better) Translates to: WPWRRTYLALFTSIQTDYMLFSR*TSSSCA Trigger: AGCACAAGAAGATGAGGTCAAACGACTGAAGAGCAT...GTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
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| CDS-3UTR CAA 90 bp | GGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTGTGGTTCTGTAAAGGGCTAAGGTaGCAGCCTGCATCTGTTAAA | + |
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Preference number: 5 (lower is better) Translates to: GHIWLFLHLSKLITPLWFCKGLR*QPASVK Trigger: TTTAACAGATGCAGGCTGCAACCTTAGCCCTTTACA...GAACCACAATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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| CDS-3UTR CAA 90 bp | CAAGATTCTGATATTCAATATAGTTGCCTCCTCCTACCACAAAGACAATGGCCTTGTAAAGGGCTAAGGTaGCAGCCTGCATCTGTTAAA | + |
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Preference number: 5 (lower is better) Translates to: QDSDIQYSCLLLPQRQWPCKGLR*QPASVK Trigger: TTTAACAGATGCAGGCTGCAACCTTAGCCCTTTACA...AGGCCATTGTCTTTGTGGTAGGAGGAGGCAACTATATTGAATATCAGAATCTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218138.2 |
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| CDS-3UTR CAA 90 bp | TTGCAGTTAGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATATGCTTGCCTTGCTTaGCCTTTATGTAGTCAACAA | + |
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Preference number: 5 (lower is better) Translates to: LQLGHGHGEGHIWLFLHLYACLA*PLCSQQ Trigger: TTGTTGACTACATAAAGGCAAAGCAAGGCAAGCATA...TAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCTAACTGCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
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| CDS-3UTR CAA 90 bp | AGGGCATGGCCATGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTTTCATCTCCATGAGATaGTCTAAAATCCGAGTAACA | + |
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Preference number: 5 (lower is better) Translates to: RAWPWRRTYLALFTSIQTFISMR*SKIRVT Trigger: TGTTACTCGGATTTTAGACAATCTCATGGAGATGAA...AGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCATGGCCATGCCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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| CDS-3UTR CAA 90 bp | TGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTAAAGACAATGGCCTCTaGGAATGGACTTTTGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: WRRTYLALFTSIQTDYPIKDNGL*EWTFVP Trigger: AGGAACAAAAGTCCATTCCAAGAGGCCATTGTCTTT...AATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
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| CDS-3UTR CAA 90 bp | GGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTGTTCATCTCCATGAGATaGTCTAAAATCCGAGTAACA | + |
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Preference number: 5 (lower is better) Translates to: GEGHIWLFLHLSKLITPLFISMR*SKIRVT Trigger: TGTTACTCGGATTTTAGACAATCTCATGGAGATGAA...CAATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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| CDS-3UTR CAA 90 bp | TGGAGAAGGACATATCTGGCTCTTTTTACATCTATCCAAACTGATTACCCCATTCCATATAAGATATGCTaGCCTTGCTTTGCCTTTATG | + |
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Preference number: 5 (lower is better) Translates to: WRRTYLALFTSIQTDYPIPYKIC*PCFAFM Trigger: CATAAAGGCAAAGCAAGGCAAGCATATCTTATATGG...AATGGGGTAATCAGTTTGGATAGATGTAAAAAGAGCCAGATATGTCCTTCTCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021335.7 |
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| CDS CAA 90 bp | AACATGAGGCACATTGAAATTCAACATCCGCTTCAGAGCCACTGTTaGCCTCTCCCGAATGCTGGCCGTGGCCGCCATCTTGCTTCCCAC | + |
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Preference number: 6 (lower is better) Translates to: NMRHIEIQHPLQSHC*PLPNAGRGRHLASH Trigger: GTGGGAAGCAAGATGGCGGCCACGGCCAGCATTCGGGAGAGGCAAACAGTGGCTCTGAAGCGGATGTTGAATTTCAATGTGCCTCATGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000219434.2 |
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| CDS TCA 72 bp | GTACACTGCAGGAACATCTGGAATCGGATCTCGGTCTaGGTGCAAAAGGAGATGCAGAGTGATGCCCATGTC | + |
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Preference number: 6 (lower is better) Translates to: VHCRNIWNRISV*VQKEMQSDAHV Trigger: GACATGGGCATCACTCTGCATCTCCTTTTGCACTCAGACCGAGATCCGATTCCAGATGTTCCTGCAGTGTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000219434.2 |
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| CDS GCA 72 bp | TCTGGAATCGGATCTCGGTCTGAGTGCAAAAGGAGATaGAGAGTGATGCCCATGTCTCTCAGTTCCTTCACA | + |
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Preference number: 6 (lower is better) Translates to: SGIGSRSECKRR*RVMPMSLSSFT Trigger: TGTGAAGGAACTGAGAGACATGGGCATCACTCTGCATCTCCTTTTGCACTCAGACCGAGATCCGATTCCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000219434.2 |
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| CDS GCA 72 bp | AGGTTGCAGCCTGCATCTGTTAAAGCCTTTTTATACTaGTCCAAATCAACCTCGGACGGTGCTTGCTGTGCG | + |
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Preference number: 6 (lower is better) Translates to: RLQPASVKAFLY*SKSTSDGACCA Trigger: CGCACAGCAAGCACCGTCCGAGGTTGATTTGGAGCAGTATAAAAAGGCTTTAACAGATGCAGGCTGCAACCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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| CDS GCA 72 bp | GCAGGAGTTGAGGCCATCTTGGCAAAAGCCTTCCACTaGTTGATATACTGTAAAGGGCTAAGGTTGCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: AGVEAILAKAFH*LIYCKGLRLQP Trigger: AGGCTGCAACCTTAGCCCTTTACAGTATATCAAGCAGTGGAAGGCTTTTGCCAAGATGGCCTCAACTCCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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| CDS CCA 72 bp | AGCACATCGTGTACCAGCGCTTGGTATGTCCACGTATaGTGTAAAGGCGTTGCCAGGTCAATGTTTCTGTCA | + |
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Preference number: 6 (lower is better) Translates to: STSCTSAWYVHV*CKGVARSMFLS Trigger: TGACAGAAACATTGACCTGGCAACGCCTTTACACCATACGTGGACATACCAAGCGCTGGTACACGATGTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000219434.2 |
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| CDS CAA 72 bp | GGAGTTGAGGCCATCTTGGCAAAAGCCTTCCACTGCTaGATATACTGTAAAGGGCTAAGGTTGCAGCCTGCA | + |
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Preference number: 6 (lower is better) Translates to: GVEAILAKAFHC*IYCKGLRLQPA Trigger: TGCAGGCTGCAACCTTAGCCCTTTACAGTATATCAAGCAGTGGAAGGCTTTTGCCAAGATGGCCTCAACTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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| CDS CAA 90 bp | CATCGTGTACCAGCGCTTGGTATGTCCACGTATGGTGTAAAGGCGTaGCCAGGTCAATGTTTCTGTCAACAAGGACTAATAAAGGCCTTT | + |
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Preference number: 6 (lower is better) Translates to: HRVPALGMSTYGVKA*PGQCFCQQGLIKAF Trigger: AAAGGCCTTTATTAGTCCTTGTTGACAGAAACATTGACCTGGCAACGCCTTTACACCATACGTGGACATACCAAGCGCTGGTACACGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000219434.2 |
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| CDS CAA 72 bp | CCAGCGCTTGGTATGTCCACGTATGGTGTAAAGGCGTaGCCAGGTCAATGTTTCTGTCAACAAGGACTAATA | + |
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Preference number: 6 (lower is better) Translates to: PALGMSTYGVKA*PGQCFCQQGLI Trigger: TATTAGTCCTTGTTGACAGAAACATTGACCTGGCAACGCCTTTACACCATACGTGGACATACCAAGCGCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000219434.2 |
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| CDS CAA 90 bp | CATGTCTCTCAGTTCCTTCACAGACAGCAGAGGAGAGATGATATCTaGGCCAAATCTGTCATAAATGAGTACCTTCCATACTGGTTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: HVSQFLHRQQRRDDI*AKSVINEYLPYWFS Trigger: GGAGAACCAGTATGGAAGGTACTCATTTATGACAGATTTGGCCAAGATATCATCTCTCCTCTGCTGTCTGTGAAGGAACTGAGAGACATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000219434.2 |
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| CDS GCA 72 bp | ATACTGCTCCAAATCAACCTCGGACGGTGCTTGCTGTaGGCTTATGTAATAGATAAGAAACAGCCTCATTTT | + |
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Preference number: 6 (lower is better) Translates to: ILLQINLGRCLL*AYVIDKKQPHF Trigger: AAAATGAGGCTGTTTCTTATCTATTACATAAGCGCACAGCAAGCACCGTCCGAGGTTGATTTGGAGCAGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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| CDS CAA 90 bp | TTGGCAAAAGCCTTCCACTGCTTGATATACTGTAAAGGGCTAAGGTaGCAGCCTGCATCTGTTAAAGCCTTTTTATACTGCTCCAAATCA | + |
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Preference number: 6 (lower is better) Translates to: LAKAFHCLIYCKGLR*QPASVKAFLYCSKS Trigger: TGATTTGGAGCAGTATAAAAAGGCTTTAACAGATGCAGGCTGCAACCTTAGCCCTTTACAGTATATCAAGCAGTGGAAGGCTTTTGCCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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| CDS CAA 72 bp | TCATCAGTTTCAGGGTTTGACTTCATCTCCATGAGATaGTCTAAAATCCGAGTAACAGGTAGATTCTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SSVSGFDFISMR*SKIRVTGRFCC Trigger: GCAGCAGAATCTACCTGTTACTCGGATTTTAGACAATCTCATGGAGATGAAGTCAAACCCTGAAACTGATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021335.7 ENSMUST00000218138.2 |
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