Pregenerated sensors for SCD4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050195Ensembl transcript IDs: ENSMUST00000058856.9
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGTTCCAGCAATGGTCAGGGTGGGTCAGGGTGACTTTCTTTGAATaGACACTCCTTGAACCCAGGAAGCGGTGGGTGGAGGAATGTCGC | + |
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Preference number: 1 (lower is better) Translates to: GFQQWSGWVRVTFFE*TLLEPRKRWVEECR Trigger: GCGACATTCCTCCACCCACCGCTTCCTGGGTTCAAGGAGTGTTCATTCAAAGAAAGTCACCCTGACCCACCCTGACCATTGCTGGAACCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR TCA 90 bp | CACCTTTGCATAGCGGGTTCCAGCAATGGTCAGGGTGGGTCAGGGTaGCTTTCTTTGAATGAACACTCCTTGAACCCAGGAAGCGGTGGG | + |
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Preference number: 1 (lower is better) Translates to: HLCIAGSSNGQGGSG*LSLNEHSLNPGSGG Trigger: CCCACCGCTTCCTGGGTTCAAGGAGTGTTCATTCAAAGAAAGTCACCCTGACCCACCCTGACCATTGCTGGAACCCGCTATGCAAAGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR TCA 90 bp | TCCTGCTCTGTGTCTGGGCTCTGTCTGTGGGAGGTCTTATTTTGGTaGGTACTCCCTACTGAGTCACTTCCTACCTTGATGGTCCCCCTG | + |
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Preference number: 1 (lower is better) Translates to: SCSVSGLCLWEVLFW*VLPTESLPTLMVPL Trigger: CAGGGGGACCATCAAGGTAGGAAGTGACTCAGTAGGGAGTACTCACCAAAATAAGACCTCCCACAGACAGAGCCCAGACACAGAGCAGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR TCA 90 bp | GATGGTCCCCCTGCTTCTGAGTCATACTCTGCATGCTTTCCCACCTaGGGATTCTCCACCTTTAGCACTTCTATGACAACTGATGCTATT | + |
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Preference number: 1 (lower is better) Translates to: DGPPASESYSACFPT*GFSTFSTSMTTDAI Trigger: AATAGCATCAGTTGTCATAGAAGTGCTAAAGGTGGAGAATCCTCAGGTGGGAAAGCATGCAGAGTATGACTCAGAAGCAGGGGGACCATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR CCA 90 bp | GGTGGGTGGAGGAATGTCGCTCTCTGTTTTATGACTAGCATACCTTaGAGCACTGAGTTTGCTACTCTCTCAATACTTAGTAACTCAGTA | + |
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Preference number: 1 (lower is better) Translates to: GGWRNVALCFMTSIP*STEFATLSILSNSV Trigger: TACTGAGTTACTAAGTATTGAGAGAGTAGCAAACTCAGTGCTCCAAGGTATGCTAGTCATAAAACAGAGAGCGACATTCCTCCACCCACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR TCA 90 bp | CTTCCAGTTGGGATGTTTGGGGTTGCTATAGTTACCCAATCACTATaGGAGCAGAACATAAATAACATTGACAACGCAAGGCAGGCAGAA | + |
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Preference number: 1 (lower is better) Translates to: LPVGMFGVAIVTQSL*EQNINNIDNARQAE Trigger: TTCTGCCTGCCTTGCGTTGTCAATGTTATTTATGTTCTGCTCTCATAGTGATTGGGTAACTATAGCAACCCCAAACATCCCAACTGGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR TCA 90 bp | CTACTAACTGAATTGTTTTTCCTTTACTTCTGGCTTGGACCAGACTaGGCTGCAGAGACATTCTATTGTGTTCTAGCATGGCCACTTTCA | + |
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Preference number: 1 (lower is better) Translates to: LLTELFFLYFWLGPD*AAETFYCVLAWPLS Trigger: TGAAAGTGGCCATGCTAGAACACAATAGAATGTCTCTGCAGCTCAGTCTGGTCCAAGCCAGAAGTAAAGGAAAAACAATTCAGTTAGTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR CCA 90 bp | CCTTCCAGTTGGGATGTTTGGGGTTGCTATAGTTACCCAATCACTATGAGAGCAAAGCCTTGGGGAGGTTaGCCAAGCACTCACTGGCTG | + |
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Preference number: 2 (lower is better) Translates to: PSSWDVWGCYSYPITMRAKPWGG*PSTHWL Trigger: CAGCCAGTGAGTGCTTGGCCAACCTCCCCAAGGCTT...TGCTCTCATAGTGATTGGGTAACTATAGCAACCCCAAACATCCCAACTGGAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR CAA 90 bp | GACAAATACCTAGGCAGAGAACTGTCCATGATGAAGGTCCTTACTTaGAGACAACAGAAAGGCTGTGAAGCCTTGGGGAGGTTGGCCAAG | + |
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Preference number: 2 (lower is better) Translates to: DKYLGRELSMMKVLT*RQQKGCEALGRLAK Trigger: CTTGGCCAACCTCCCCAAGGCTTCACAGCCTTTCTGTTGTCTCAAAGTAAGGACCTTCATCATGGACAGTTCTCTGCCTAGGTATTTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR GCA 90 bp | GTAACTTCTGGAGCCCCCACAGCACAATGTGTTCTCAGAGCTCTCTCTCTTTGCGGTTTGACCCAACTTTaGCTACAATCCTTCCAGTTG | + |
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Preference number: 2 (lower is better) Translates to: VTSGAPTAQCVLRALSLCGLTQL*LQSFQL Trigger: CAACTGGAAGGATTGTAGGCAAAGTTGGGTCAAACC...GCAAAGAGAGAGAGCTCTGAGAACACATTGTGCTGTGGGGGCTCCAGAAGTTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR GCA 90 bp | AAAGCTTCTGGAACCTTCTCAGAGGACTCAGTGAAACACCTCCCTCCCTGCTCTTGGGATGTTTGGGGTTaGTATAGTTACCCAATCACT | + |
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Preference number: 2 (lower is better) Translates to: KASGTFSEDSVKHLPPCSWDVWG*YSYPIT Trigger: AGTGATTGGGTAACTATAGCAACCCCAAACATCCCA...AGAGCAGGGAGGGAGGTGTTTCACTGAGTCCTCTGAGAAGGTTCCAGAAGCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR TCA 90 bp | CCTTCCAGTTGGGATGTTTGGGGTTGCTATAGTTACCCAATCACTATGAGAGCAGTGAGTACTCCCTACTaGGTCACTTCCTACCTTGAT | + |
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Preference number: 2 (lower is better) Translates to: PSSWDVWGCYSYPITMRAVSTPY*VTSYLD Trigger: ATCAAGGTAGGAAGTGACTCAGTAGGGAGTACTCAC...TGCTCTCATAGTGATTGGGTAACTATAGCAACCCCAAACATCCCAACTGGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR TCA 90 bp | CAAAGTCACAGGTGTCACAAGGAATACCTGGTAATTGTGAGGGTTATTTCTCAATCTCAGAGGACTCAGTaGAACACCTCCCTCCCTGCT | + |
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Preference number: 2 (lower is better) Translates to: QSHRCHKEYLVIVRVISQSQRTQ*NTSLPA Trigger: AGCAGGGAGGGAGGTGTTTCACTGAGTCCTCTGAGA...TTGAGAAATAACCCTCACAATTACCAGGTATTCCTTGTGACACCTGTGACTTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR CCA 90 bp | CCTTCCAGTTGGGATGTTTGGGGTTGCTATAGTTACCCAATCACTATGAGAGCATTTAATCCCAACAATTaGGAGGCGGAGGCAGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: PSSWDVWGCYSYPITMRAFNPNN*EAEAGR Trigger: TCTTCCTGCCTCCGCCTCCCAATTGTTGGGATTAAA...TGCTCTCATAGTGATTGGGTAACTATAGCAACCCCAAACATCCCAACTGGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR TCA 90 bp | CCTTCCAGTTGGGATGTTTGGGGTTGCTATAGTTACCCAATCACTATGAGAGCAGAGGTCTTATTTTGGTaGGTACTCCCTACTGAGTCA | + |
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Preference number: 2 (lower is better) Translates to: PSSWDVWGCYSYPITMRAEVLFW*VLPTES Trigger: TGACTCAGTAGGGAGTACTCACCAAAATAAGACCTC...TGCTCTCATAGTGATTGGGTAACTATAGCAACCCCAAACATCCCAACTGGAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR TCA 90 bp | CGTTGTTGGAAAATACCAAAAATACCAGTCAAGAGTCACAAGGAAGTACAAAGTGCAGGAAGATCTCTGTaGGTTCGAAGCCAGCCTGGT | + |
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Preference number: 2 (lower is better) Translates to: RCWKIPKIPVKSHKEVQSAGRSL*VRSQPG Trigger: ACCAGGCTGGCTTCGAACTCACAGAGATCTTCCTGC...ACTTTGTACTTCCTTGTGACTCTTGACTGGTATTTTTGGTATTTTCCAACAACG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR GCA 90 bp | CTGAATTGTTTTTCCTTTACTTCTGGCTTGGACCAGACTGAGCTGCAGAGACATCAAGCACTCACTGGCTaGTTCTTAGAGAAGGAGAAA | + |
|
Preference number: 2 (lower is better) Translates to: LNCFSFTSGLDQTELQRHQALTG*FLEKEK Trigger: TTTCTCCTTCTCTAAGAAGCAGCCAGTGAGTGCTTG...ATGTCTCTGCAGCTCAGTCTGGTCCAAGCCAGAAGTAAAGGAAAAACAATTCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR TCA 90 bp | ACAACAACAAACAAACAAACAAACAAACAAAAACCCTGTCTCAGGAGAAATCTCACAACAGAAAGGCTGTaGAGCCTTGGGGAGGTTGGC | + |
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Preference number: 2 (lower is better) Translates to: TTTNKQTNKQKPCLRRNLTTERL*SLGEVG Trigger: GCCAACCTCCCCAAGGCTTCACAGCCTTTCTGTTGT...GAGATTTCTCCTGAGACAGGGTTTTTGTTTGTTTGTTTGTTTGTTTGTTGTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR TCA 90 bp | CGTTGTTGGAAAATACCAAAAATACCAGTCAAGAGTCACAAGGAAGTACAAAGTGTTGCCTTGAACATTTaGCAAGACTTCGCAGAGCTG | + |
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Preference number: 2 (lower is better) Translates to: RCWKIPKIPVKSHKEVQSVALNI*QDFAEL Trigger: CAGCTCTGCGAAGTCTTGTCAAATGTTCAAGGCAAC...ACTTTGTACTTCCTTGTGACTCTTGACTGGTATTTTTGGTATTTTCCAACAACG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR CCA 90 bp | CGTTGTTGGAAAATACCAAAAATACCAGTCAAGAGTCACAAGGAAGTACAAAGTGGCCCAGTTGTTTTATaGAACAGAGACCCAGATGAC | + |
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Preference number: 2 (lower is better) Translates to: RCWKIPKIPVKSHKEVQSGPVVL*NRDPDD Trigger: GTCATCTGGGTCTCTGTTCCATAAAACAACTGGGCC...ACTTTGTACTTCCTTGTGACTCTTGACTGGTATTTTTGGTATTTTCCAACAACG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR TCA 90 bp | CTAGCATACCTTGGAGCACTGAGTTTGCTACTCTCTCAATACTTAGTAACTCAGGTTACCCAATCACTATaGGAGCAGAACATAAATAAC | + |
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Preference number: 2 (lower is better) Translates to: LAYLGALSLLLSQYLVTQVTQSL*EQNINN Trigger: GTTATTTATGTTCTGCTCTCATAGTGATTGGGTAAC...CTGAGTTACTAAGTATTGAGAGAGTAGCAAACTCAGTGCTCCAAGGTATGCTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR GCA 90 bp | CGTTGTTGGAAAATACCAAAAATACCAGTCAAGAGTCACAAGGAAGTACAAAGTTGGACCAGACTGAGCTaGAGAGACATTCTATTGTGT | + |
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Preference number: 2 (lower is better) Translates to: RCWKIPKIPVKSHKEVQSWTRLS*RDILLC Trigger: ACACAATAGAATGTCTCTGCAGCTCAGTCTGGTCCA...ACTTTGTACTTCCTTGTGACTCTTGACTGGTATTTTTGGTATTTTCCAACAACG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR CAA 90 bp | AAAGCTTCTGGAACCTTCTCAGAGGACTCAGTGAAACACCTCCCTCCCTGCTCTGAAGCCTTGGGGAGGTaGGCCAAGCACTCACTGGCT | + |
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Preference number: 3 (lower is better) Translates to: KASGTFSEDSVKHLPPCSEALGR*AKHSLA Trigger: AGCCAGTGAGTGCTTGGCCAACCTCCCCAAGGCTTC...AGAGCAGGGAGGGAGGTGTTTCACTGAGTCCTCTGAGAAGGTTCCAGAAGCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR TCA 72 bp | CAATGGTCAGGGTGGGTCAGGGTGACTTTCTTTGAATaGACACTCCTTGAACCCAGGAAGCGGTGGGTGGAG | + |
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Preference number: 3 (lower is better) Translates to: QWSGWVRVTFFE*TLLEPRKRWVE Trigger: CTCCACCCACCGCTTCCTGGGTTCAAGGAGTGTTCATTCAAAGAAAGTCACCCTGACCCACCCTGACCATTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR GCA 72 bp | TGTGTTCTAGCATGGCCACTTTCAACGGCCGTTTCCTaGTCTGTGTCTGGGCTCTGTCTGTGGGAGGTCTTA | + |
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Preference number: 3 (lower is better) Translates to: CVLAWPLSTAVS*SVSGLCLWEVL Trigger: TAAGACCTCCCACAGACAGAGCCCAGACACAGAGCAGGAAACGGCCGTTGAAAGTGGCCATGCTAGAACACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR TCA 72 bp | GTGTCTGGGCTCTGTCTGTGGGAGGTCTTATTTTGGTaGGTACTCCCTACTGAGTCACTTCCTACCTTGATG | + |
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Preference number: 3 (lower is better) Translates to: VSGLCLWEVLFW*VLPTESLPTLM Trigger: CATCAAGGTAGGAAGTGACTCAGTAGGGAGTACTCACCAAAATAAGACCTCCCACAGACAGAGCCCAGACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR TCA 72 bp | ACTAGAGGACAAAGGGGTCATAAAGGAGAGTTGCCTTaGACATTTGACAAGACTTCGCAGAGCTGGGCACAG | + |
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Preference number: 3 (lower is better) Translates to: TRGQRGHKGELP*TFDKTSQSWAQ Trigger: CTGTGCCCAGCTCTGCGAAGTCTTGTCAAATGTTCAAGGCAACTCTCCTTTATGACCCCTTTGTCCTCTAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR TCA 72 bp | CCTGCTTCTGAGTCATACTCTGCATGCTTTCCCACCTaGGGATTCTCCACCTTTAGCACTTCTATGACAACT | + |
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Preference number: 3 (lower is better) Translates to: PASESYSACFPT*GFSTFSTSMTT Trigger: AGTTGTCATAGAAGTGCTAAAGGTGGAGAATCCTCAGGTGGGAAAGCATGCAGAGTATGACTCAGAAGCAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR CAA 90 bp | CCTTCCAGTTGGGATGTTTGGGGTTGCTATAGTTACCCAATCACTATGAGAGCAGTTCAGGAGAGGGCTTaGGTAGCATTATTCAGTAGT | + |
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Preference number: 3 (lower is better) Translates to: PSSWDVWGCYSYPITMRAVQERA*VALFSS Trigger: ACTACTGAATAATGCTACCAAAGCCCTCTCCTGAAC...TGCTCTCATAGTGATTGGGTAACTATAGCAACCCCAAACATCCCAACTGGAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR GCA 72 bp | GTTTTTCCTTTACTTCTGGCTTGGACCAGACTGAGCTaGAGAGACATTCTATTGTGTTCTAGCATGGCCACT | + |
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Preference number: 3 (lower is better) Translates to: VFPLLLAWTRLS*RDILLCSSMAT Trigger: AGTGGCCATGCTAGAACACAATAGAATGTCTCTGCAGCTCAGTCTGGTCCAAGCCAGAAGTAAAGGAAAAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR CCA 72 bp | CCCAACTTTGCCTACAATCCTTCCAGTTGGGATGTTTaGGGTTGCTATAGTTACCCAATCACTATGAGAGCA | + |
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Preference number: 3 (lower is better) Translates to: PNFAYNPSSWDV*GCYSYPITMRA Trigger: TGCTCTCATAGTGATTGGGTAACTATAGCAACCCCAAACATCCCAACTGGAAGGATTGTAGGCAAAGTTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR GCA 72 bp | TTTGCCTACAATCCTTCCAGTTGGGATGTTTGGGGTTaGTATAGTTACCCAATCACTATGAGAGCAGAACAT | + |
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Preference number: 3 (lower is better) Translates to: FAYNPSSWDVWG*YSYPITMRAEH Trigger: ATGTTCTGCTCTCATAGTGATTGGGTAACTATAGCAACCCCAAACATCCCAACTGGAAGGATTGTAGGCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR TCA 72 bp | GGGATGTTTGGGGTTGCTATAGTTACCCAATCACTATaGGAGCAGAACATAAATAACATTGACAACGCAAGG | + |
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Preference number: 3 (lower is better) Translates to: GMFGVAIVTQSL*EQNINNIDNAR Trigger: CCTTGCGTTGTCAATGTTATTTATGTTCTGCTCTCATAGTGATTGGGTAACTATAGCAACCCCAAACATCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR CCA 72 bp | AGGAATGTCGCTCTCTGTTTTATGACTAGCATACCTTaGAGCACTGAGTTTGCTACTCTCTCAATACTTAGT | + |
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Preference number: 3 (lower is better) Translates to: RNVALCFMTSIP*STEFATLSILS Trigger: ACTAAGTATTGAGAGAGTAGCAAACTCAGTGCTCCAAGGTATGCTAGTCATAAAACAGAGAGCGACATTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR CAA 90 bp | CGTTGTTGGAAAATACCAAAAATACCAGTCAAGAGTCACAAGGAAGTACAAAGTCAAGCCGAAGCCTTCTaGTTCTGTGGCATAACAATG | + |
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Preference number: 3 (lower is better) Translates to: RCWKIPKIPVKSHKEVQSQAEAF*FCGITM Trigger: CATTGTTATGCCACAGAACAAGAAGGCTTCGGCTTG...ACTTTGTACTTCCTTGTGACTCTTGACTGGTATTTTTGGTATTTTCCAACAACG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR-3UTR CAA 90 bp | CGTTGTTGGAAAATACCAAAAATACCAGTCAAGAGTCACAAGGAAGTACAAAGTAGGTTTGACCCAACTTaGCCTACAATCCTTCCAGTT | + |
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Preference number: 3 (lower is better) Translates to: RCWKIPKIPVKSHKEVQSRFDPT*PTILPV Trigger: AACTGGAAGGATTGTAGGCAAAGTTGGGTCAAACCT...ACTTTGTACTTCCTTGTGACTCTTGACTGGTATTTTTGGTATTTTCCAACAACG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR TCA 72 bp | AACCCTGTCTCAGGAGAAATCTCTTTTCCTACTAACTaGATTGTTTTTCCTTTACTTCTGGCTTGGACCAGA | + |
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Preference number: 3 (lower is better) Translates to: NPVSGEISFPTN*IVFPLLLAWTR Trigger: TCTGGTCCAAGCCAGAAGTAAAGGAAAAACAATTCAGTTAGTAGGAAAAGAGATTTCTCCTGAGACAGGGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| CDS-3UTR GCA 90 bp | CTAGCATACCTTGGAGCACTGAGTTTGCTACTCTCTCAATACTTAGTAACTCAGTGGCTCCACAAGCGATaGGCTCCGGCTGTGATGCCC | + |
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Preference number: 4 (lower is better) Translates to: LAYLGALSLLLSQYLVTQWLHKR*APAVMP Trigger: GGGCATCACAGCCGGAGCGCATCGCTTGTGGAGCCA...CTGAGTTACTAAGTATTGAGAGAGTAGCAAACTCAGTGCTCCAAGGTATGCTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| CDS-3UTR CCA 90 bp | CAAAGTCACAGGTGTCACAAGGAATACCTGGTAATTGTGAGGGTTATTTCTCAACGGATATCTTCTGCCTaGAGGGGCATCTTCTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: QSHRCHKEYLVIVRVISQRISSA*RGIFSS Trigger: AGAAGAGAAGATGCCCCTCCAGGCAGAAGATATCCG...TTGAGAAATAACCCTCACAATTACCAGGTATTCCTTGTGACACCTGTGACTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR CAA 72 bp | AGGAAGAAACCACAACTCAAGGAGGTGGGAAGGGCGTaGTTGGAAAATACCAAAAATACCAGTCAAGAGTCA | + |
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Preference number: 4 (lower is better) Translates to: RKKPQLKEVGRA*LENTKNTSQES Trigger: TGACTCTTGACTGGTATTTTTGGTATTTTCCAACAACGCCCTTCCCACCTCCTTGAGTTGTGGTTTCTTCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR CAA 72 bp | AAGAAACCACAACTCAAGGAGGTGGGAAGGGCGTTGTaGGAAAATACCAAAAATACCAGTCAAGAGTCACAA | + |
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Preference number: 4 (lower is better) Translates to: KKPQLKEVGRAL*ENTKNTSQESQ Trigger: TTGTGACTCTTGACTGGTATTTTTGGTATTTTCCAACAACGCCCTTCCCACCTCCTTGAGTTGTGGTTTCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| CDS-3UTR TCA 90 bp | CAAAGTCACAGGTGTCACAAGGAATACCTGGTAATTGTGAGGGTTATTTCTCAATGTTCACCAGCCAAGTaGAGTTTAGAAGCACAGCAT | + |
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Preference number: 4 (lower is better) Translates to: QSHRCHKEYLVIVRVISQCSPAK*SLEAQH Trigger: ATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACA...TTGAGAAATAACCCTCACAATTACCAGGTATTCCTTGTGACACCTGTGACTTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| 3UTR CAA 72 bp | AACAATCGTCTACATGATTTTAGGTTTGACCCAACTTaGCCTACAATCCTTCCAGTTGGGATGTTTGGGGTT | + |
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Preference number: 4 (lower is better) Translates to: NNRLHDFRFDPT*PTILPVGMFGV Trigger: AACCCCAAACATCCCAACTGGAAGGATTGTAGGCAAAGTTGGGTCAAACCTAAAATCATGTAGACGATTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| CDS-3UTR CCA 90 bp | ACAACAACAAACAAACAAACAAACAAACAAAAACCCTGTCTCAGGAGAAATCTCCCTCATCCTGGTAGCTaGGGTCATACAGATCATCTT | + |
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Preference number: 4 (lower is better) Translates to: TTTNKQTNKQKPCLRRNLPHPGS*GHTDHL Trigger: AAGATGATCTGTATGACCCCAGCTACCAGGATGAGG...GAGATTTCTCCTGAGACAGGGTTTTTGTTTGTTTGTTTGTTTGTTTGTTGTTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| CDS CCA 90 bp | GCCTGGAGGGGCATCTTCTCTTCTCCATCCTGCTGTCTCCGGGAGTaGGGTTCCATGATGTTGGTAGTGCTACACCTGCTGGAGATCTCT | + |
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Preference number: 5 (lower is better) Translates to: AWRGIFSSPSCCLRE*GSMMLVVLHLLEIS Trigger: AGAGATCTCCAGCAGGTGTAGCACTACCAACATCATGGAACCCCACTCCCGGAGACAGCAGGATGGAGAAGAGAAGATGCCCCTCCAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| CDS-3UTR CAA 90 bp | TTGTGTTCTAGCATGGCCACTTTCAACGGCCGTTTCCTGCTCTGTGTCTGGGCTTGCGTAGGGGCAGCCTaGCTTTATAGGTTCGGTGGC | + |
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Preference number: 5 (lower is better) Translates to: LCSSMATFNGRFLLCVWACVGAA*LYRFGG Trigger: GCCACCGAACCTATAAAGCAAGGCTGCCCCTACGCA...AGCCCAGACACAGAGCAGGAAACGGCCGTTGAAAGTGGCCATGCTAGAACACAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| CDS-3UTR CAA 90 bp | GTAACTTCTGGAGCCCCCACAGCACAATGTGTTCTCAGAGCTCTCTCTCTTTGCGACATGTCCAGGTTTTaGCCCTTCTCTTTGACAGCC | + |
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Preference number: 5 (lower is better) Translates to: VTSGAPTAQCVLRALSLCDMSRF*PFSLTA Trigger: GGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTC...GCAAAGAGAGAGAGCTCTGAGAACACATTGTGCTGTGGGGGCTCCAGAAGTTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| CDS-3UTR CAA 90 bp | CAAAGTCACAGGTGTCACAAGGAATACCTGGTAATTGTGAGGGTTATTTCTCAACCTGCTGGAGATCTCTaGTGGCAAGTGGGCCGTCAT | + |
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Preference number: 5 (lower is better) Translates to: QSHRCHKEYLVIVRVISQPAGDL*WQVGRH Trigger: ATGACGGCCCACTTGCCACAAGAGATCTCCAGCAGG...TTGAGAAATAACCCTCACAATTACCAGGTATTCCTTGTGACACCTGTGACTTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| CDS-3UTR CAA 90 bp | ACAACAACAAACAAACAAACAAACAAACAAAAACCCTGTCTCAGGAGAAATCTCTTTTTGCCCTTCTCTTaGACAGCCGGATGTTTGCGC | + |
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Preference number: 5 (lower is better) Translates to: TTTNKQTNKQKPCLRRNLFLPFS*TAGCLR Trigger: GCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAA...GAGATTTCTCCTGAGACAGGGTTTTTGTTTGTTTGTTTGTTTGTTTGTTGTTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| CDS CAA 72 bp | CCATCCTGCTGTCTCCGGGAGTGGGGTTCCATGATGTaGGTAGTGCTACACCTGCTGGAGATCTCTTGTGGC | + |
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Preference number: 6 (lower is better) Translates to: PSCCLREWGSMM*VVLHLLEISCG Trigger: GCCACAAGAGATCTCCAGCAGGTGTAGCACTACCAACATCATGGAACCCCACTCCCGGAGACAGCAGGATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| CDS CAA 90 bp | TTCTCTTCTCCATCCTGCTGTCTCCGGGAGTGGGGTTCCATGATGTaGGTAGTGCTACACCTGCTGGAGATCTCTTGTGGCAAGTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: FSSPSCCLREWGSMM*VVLHLLEISCGKWA Trigger: GGCCCACTTGCCACAAGAGATCTCCAGCAGGTGTAGCACTACCAACATCATGGAACCCCACTCCCGGAGACAGCAGGATGGAGAAGAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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| CDS CCA 72 bp | GGCATCTTCTCTTCTCCATCCTGCTGTCTCCGGGAGTaGGGTTCCATGATGTTGGTAGTGCTACACCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: GIFSSPSCCLRE*GSMMLVVLHLL Trigger: CAGCAGGTGTAGCACTACCAACATCATGGAACCCCACTCCCGGAGACAGCAGGATGGAGAAGAGAAGATGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058856.9 |
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