Pregenerated sensors for SCD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025203Ensembl transcript IDs: ENSMUST00000026221.7, ENSMUST00000237039.2
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTATCCCAGGCAGAGTCCTACCTGGTCACAGAGCTAGTGAGGCATaGGTCAGTACTGCCTTGCCACAAACAGCAGCGGGACTGAAAGGG | + |
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Preference number: 1 (lower is better) Translates to: CIPGRVLPGHRASEA*VSTALPQTAAGLKG Trigger: CCCTTTCAGTCCCGCTGCTGTTTGTGGCAAGGCAGTACTGACTCATGCCTCACTAGCTCTGTGACCAGGTAGGACTCTGCCTGGGATACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR TCA 90 bp | CTCAGTTGCCACCTACTAAGAATTAGGAGAGGAGGCGCGCTATGTTaGAAGGCTGCGGTAGCTCTGCCAGACGGAGCTGAGCCTGTTCAT | + |
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Preference number: 1 (lower is better) Translates to: LSCHLLRIRRGGALC*KAAVALPDGAEPVH Trigger: ATGAACAGGCTCAGCTCCGTCTGGCAGAGCTACCGCAGCCTTTCAACATAGCGCGCCTCCTCTCCTAATTCTTAGTAGGTGGCAACTGAG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR CCA 90 bp | ACGACCATCATCTTAAAGATGGAAGAACAGGAATTAAAAAGACCCTaGGGGTGCAGCTCACGGGACGCTCGAAACCATGAGCGACTGCCC | + |
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Preference number: 1 (lower is better) Translates to: TTIILKMEEQELKRP*GCSSRDARNHERLP Trigger: GGGCAGTCGCTCATGGTTTCGAGCGTCCCGTGAGCTGCACCCCCAGGGTCTTTTTAATTCCTGTTCTTCCATCTTTAAGATGATGGTCGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR GCA 90 bp | ATCATCTTAAAGATGGAAGAACAGGAATTAAAAAGACCCTGGGGGTaGAGCTCACGGGACGCTCGAAACCATGAGCGACTGCCCTACGGA | + |
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Preference number: 1 (lower is better) Translates to: IILKMEEQELKRPWG*SSRDARNHERLPYG Trigger: TCCGTAGGGCAGTCGCTCATGGTTTCGAGCGTCCCGTGAGCTGCACCCCCAGGGTCTTTTTAATTCCTGTTCTTCCATCTTTAAGATGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR TCA 90 bp | GCAAATACCTTGGATTCGCCCAAGAATTCTCTTTTAGCAAACAGCTaGAGGGTAAGGCTACTTTCAAGTGGGCACAGGAAGGCCCTAAAG | + |
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Preference number: 1 (lower is better) Translates to: ANTLDSPKNSLLANS*RVRLLSSGHRKALK Trigger: CTTTAGGGCCTTCCTGTGCCCACTTGAAAGTAGCCTTACCCTTCAGCTGTTTGCTAAAAGAGAATTCTTGGGCGAATCCAAGGTATTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR CCA 90 bp | GAATTCTCTTTTAGCAAACAGCTGAAGGGTAAGGCTACTTTCAAGTaGGCACAGGAAGGCCCTAAAGCCTCTCTCTATTCAACTAGCCCA | + |
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Preference number: 1 (lower is better) Translates to: EFSFSKQLKGKATFK*AQEGPKASLYSTSP Trigger: TGGGCTAGTTGAATAGAGAGAGGCTTTAGGGCCTTCCTGTGCCCACTTGAAAGTAGCCTTACCCTTCAGCTGTTTGCTAAAAGAGAATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR GCA 90 bp | GTTGTATCTCTGAGTGAGGAAGGTGCCAGGACCACACATCTTTACTaGCTGGAAATATCCAGGACATTTCTGCCTAGACCAAGACTAAAT | + |
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Preference number: 1 (lower is better) Translates to: VVSLSEEGARTTHLY*LEISRTFLPRPRLN Trigger: ATTTAGTCTTGGTCTAGGCAGAAATGTCCTGGATATTTCCAGGCAGTAAAGATGTGTGGTCCTGGCACCTTCCTCACTCAGAGATACAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR CCA 90 bp | TTTTCTTGTATTTCTAACTCAGAGCAGCTTAAGAAGAGTTGGGGGTaGGGCACGAACCTTTACTGTAGACCCTTGAGAAGTTGGTGTACT | + |
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Preference number: 1 (lower is better) Translates to: FSCISNSEQLKKSWG*GTNLYCRPLRSWCT Trigger: AGTACACCAACTTCTCAAGGGTCTACAGTAAAGGTTCGTGCCCCACCCCCAACTCTTCTTAAGCTGCTCTGAGTTAGAAATACAAGAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR CAA 90 bp | CATCACCCAGGAGGGCTGATTAGCCCGCGAAGCTTTGCCGAAGCTTaGCCAAGTGCCGGGAGCACGGTGCATGCTCTGTCCGCCCTGACT | + |
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Preference number: 2 (lower is better) Translates to: HHPGGLISPRSFAEA*PSAGSTVHALSALT Trigger: AGTCAGGGCGGACAGAGCATGCACCGTGCTCCCGGCACTTGGCAAAGCTTCGGCAAAGCTTCGCGGGCTAATCAGCCCTCCTGGGTGATG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR-3UTR GCA 90 bp | AGACCCTGGGGGTGCAGCTCACGGGACGCTCGAAACCATGAGCGACTGCCCTACACTCAGAGATCCACCTaGCTCTGCCTCTCCAGTCCT | + |
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Preference number: 2 (lower is better) Translates to: RPWGCSSRDARNHERLPYTQRST*LCLSSP Trigger: AGGACTGGAGAGGCAGAGGCAGGTGGATCTCTGAGT...GTAGGGCAGTCGCTCATGGTTTCGAGCGTCCCGTGAGCTGCACCCCCAGGGTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR-3UTR TCA 90 bp | GACGGAGCTGAGCCTGTTCATAAGAGATCCCCCTCTCCCACGGCTTTGATGAATCCAGCCAGGTGGCGTTaGGCACCACGGCGTATCGCA | + |
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Preference number: 2 (lower is better) Translates to: DGAEPVHKRSPSPTALMNPARWR*APRRIA Trigger: TGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGG...ATTCATCAAAGCCGTGGGAGAGGGGGATCTCTTATGAACAGGCTCAGCTCCGTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000237039.2 |
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| 3UTR-3UTR CCA 90 bp | CCAAGACAGCAGCCCTGGACACTCTCTTCCGGTCGTAAGCCAGGCCCAGGAGAGTGCCAAGCTGGCTTCTaGAACAGGAACTGCAAGACC | + |
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Preference number: 2 (lower is better) Translates to: PRQQPWTLSSGRKPGPGECQAGF*NRNCKT Trigger: GGTCTTGCAGTTCCTGTTCCAGAAGCCAGCTTGGCA...CTCTCCTGGGCCTGGCTTACGACCGGAAGAGAGTGTCCAGGGCTGCTGTCTTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237039.2 |
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| 3UTR-3UTR GCA 90 bp | CCCGCGAAGCTTTGCCGAAGCTTTGCCAAGTGCCGGGAGCACGGTGCATGCTCTCTGCCTCTCCAGTCCTaGAATTTAAGATGCAAGCCA | + |
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Preference number: 2 (lower is better) Translates to: PAKLCRSFAKCREHGACSLPLQS*NLRCKP Trigger: TGGCTTGCATCTTAAATTGCAGGACTGGAGAGGCAG...AGAGCATGCACCGTGCTCCCGGCACTTGGCAAAGCTTCGGCAAAGCTTCGCGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR-3UTR CCA 90 bp | GCGGCTGGCTTGGGAGAAGCAATGAGAAACGAGGTCATCAGGGACAAAGCAAAGTGCCAAGCTGGCTTCTaGAACAGGAACTGCAAGACC | + |
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Preference number: 2 (lower is better) Translates to: AAGLGEAMRNEVIRDKAKCQAGF*NRNCKT Trigger: GGTCTTGCAGTTCCTGTTCCAGAAGCCAGCTTGGCA...CTTTGCTTTGTCCCTGATGACCTCGTTTCTCATTGCTTCTCCCAAGCCAGCCGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR-3UTR CCA 90 bp | GCGGCTGGCTTGGGAGAAGCAATGAGAAACGAGGTCATCAGGGACAAAGCAAAGAAGAAGAGTTGGGGGTaGGGCACGAACCTTTACTGT | + |
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Preference number: 2 (lower is better) Translates to: AAGLGEAMRNEVIRDKAKKKSWG*GTNLYC Trigger: ACAGTAAAGGTTCGTGCCCCACCCCCAACTCTTCTT...CTTTGCTTTGTCCCTGATGACCTCGTTTCTCATTGCTTCTCCCAAGCCAGCCGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR-3UTR TCA 90 bp | GACGGAGCTGAGCCTGTTCATAAGAGATCCCCCTCTCCCACGGCTTTGATGAATCAGCCTAAACTACACTaGGATACTGATGTGTTACTG | + |
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Preference number: 2 (lower is better) Translates to: DGAEPVHKRSPSPTALMNQPKLH*DTDVLL Trigger: CAGTAACACATCAGTATCTCAGTGTAGTTTAGGCTG...ATTCATCAAAGCCGTGGGAGAGGGGGATCTCTTATGAACAGGCTCAGCTCCGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR-3UTR TCA 90 bp | GGAGTCCTGCATGTTTTCATAGCAGTGAGTATACATTATCTGACGCATCCATTCGGTTGTATCTCTGAGTaGGGAAGGTGCCAGGACCAC | + |
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Preference number: 2 (lower is better) Translates to: GVLHVFIAVSIHYLTHPFGCISE*GRCQDH Trigger: GTGGTCCTGGCACCTTCCTCACTCAGAGATACAACC...GAATGGATGCGTCAGATAATGTATACTCACTGCTATGAAAACATGCAGGACTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR-3UTR CCA 90 bp | GGAGTCCTGCATGTTTTCATAGCAGTGAGTATACATTATCTGACGCATCCATTCTCCTTAGCCACAGCATaGTTCAGATCCACGGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: GVLHVFIAVSIHYLTHPFSLATA*FRSTGQ Trigger: CTGCCCCGTGGATCTGAACCATGCTGTGGCTAAGGA...GAATGGATGCGTCAGATAATGTATACTCACTGCTATGAAAACATGCAGGACTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR-3UTR GCA 90 bp | AAACAAATAACAAAACCTACAAATCGCGTACGTTCAAAATTACTTCACCCATCCGCACAGCACCTGGTATaGTGTACAGCCGACGCGGCC | + |
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Preference number: 2 (lower is better) Translates to: KQITKPTNRVRSKLLHPSAQHLV*CTADAA Trigger: GGCCGCGTCGGCTGTACAGCATACCAGGTGCTGTGC...GGATGGGTGAAGTAATTTTGAACGTACGCGATTTGTAGGTTTTGTTATTTGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR-3UTR CCA 90 bp | TTTAGTGTCACGAAGTTCCTCAGTTGCCACCTACTAAGAATTAGGAGAGGAGGCGAAGTTGGTGTACTCTaGAAGGTGAACACTGACCTA | + |
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Preference number: 2 (lower is better) Translates to: FSVTKFLSCHLLRIRRGGEVGVL*KVNTDL Trigger: TAGGTCAGTGTTCACCTTCCAGAGTACACCAACTTC...GCCTCCTCTCCTAATTCTTAGTAGGTGGCAACTGAGGAACTTCGTGACACTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR-3UTR CCA 90 bp | TTTAGTGTCACGAAGTTCCTCAGTTGCCACCTACTAAGAATTAGGAGAGGAGGCAGACCCTTGAGAAGTTaGTGTACTCTGGAAGGTGAA | + |
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Preference number: 2 (lower is better) Translates to: FSVTKFLSCHLLRIRRGGRPLRS*CTLEGE Trigger: TTCACCTTCCAGAGTACACCAACTTCTCAAGGGTCT...GCCTCCTCTCCTAATTCTTAGTAGGTGGCAACTGAGGAACTTCGTGACACTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR-3UTR CCA 90 bp | AAACAAATAACAAAACCTACAAATCGCGTACGTTCAAAATTACTTCACCCATCCGCAAGCCACCACACCTaGCCCCGGGTCCTTGTCATT | + |
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Preference number: 2 (lower is better) Translates to: KQITKPTNRVRSKLLHPSASHHT*PRVLVI Trigger: AATGACAAGGACCCGGGGCCAGGTGTGGTGGCTTGC...GGATGGGTGAAGTAATTTTGAACGTACGCGATTTGTAGGTTTTGTTATTTGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR-3UTR CCA 90 bp | AACTACACTGAGATACTGATGTGTTACTGTATTTTAGTGTCACGAAGTTCCTCACCAAGACAGCAGCCCTaGACACTCTCTTCCGGTCGT | + |
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Preference number: 2 (lower is better) Translates to: NYTEILMCYCILVSRSSSPRQQP*TLSSGR Trigger: ACGACCGGAAGAGAGTGTCCAGGGCTGCTGTCTTGG...TGAGGAACTTCGTGACACTAAAATACAGTAACACATCAGTATCTCAGTGTAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237039.2 |
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| 3UTR-3UTR GCA 90 bp | AACTACACTGAGATACTGATGTGTTACTGTATTTTAGTGTCACGAAGTTCCTCAAGATCCACCTGCCTCTaGCTCTCCAGTCCTGCAATT | + |
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Preference number: 2 (lower is better) Translates to: NYTEILMCYCILVSRSSSRSTCL*LSSPAI Trigger: AATTGCAGGACTGGAGAGGCAGAGGCAGGTGGATCT...TGAGGAACTTCGTGACACTAAAATACAGTAACACATCAGTATCTCAGTGTAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR-3UTR CCA 90 bp | TCTGGCAAAGCCTGGGCTAAAAATAACAGGAGAAATCTCTCAAGATTTTTCTTGAAGAAGAGTTGGGGGTaGGGCACGAACCTTTACTGT | + |
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Preference number: 2 (lower is better) Translates to: SGKAWAKNNRRNLSRFFLKKSWG*GTNLYC Trigger: ACAGTAAAGGTTCGTGCCCCACCCCCAACTCTTCTT...CAAGAAAAATCTTGAGAGATTTCTCCTGTTATTTTTAGCCCAGGCTTTGCCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR-3UTR CCA 90 bp | AAACAAATAACAAAACCTACAAATCGCGTACGTTCAAAATTACTTCACCCATCCTCGAAGCACAGCACCTaGTATGCTGTACAGCCGACG | + |
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Preference number: 2 (lower is better) Translates to: KQITKPTNRVRSKLLHPSSKHST*YAVQPT Trigger: CGTCGGCTGTACAGCATACCAGGTGCTGTGCTTCGA...GGATGGGTGAAGTAATTTTGAACGTACGCGATTTGTAGGTTTTGTTATTTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR-3UTR GCA 90 bp | ACTACAGTTGCACATAATAAAGGAAAAATCCCACCCAAGGAAGGAAACGGAGTCACGAAGTTCCTCAGTTaGCACCTACTAAGAATTAGG | + |
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Preference number: 2 (lower is better) Translates to: TTVAHNKGKIPPKEGNGVTKFLS*HLLRIR Trigger: CCTAATTCTTAGTAGGTGGCAACTGAGGAACTTCGT...GACTCCGTTTCCTTCCTTGGGTGGGATTTTTCCTTTATTATGTGCAACTGTAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR-3UTR GCA 90 bp | GACTTTTCAGTTTTAACTGTGACTCAAGTTCAACTCTTGAAATCCTTCCACTGTTCCTGCAATTTAAGATaGAAGCCACCACACCTGGCC | + |
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Preference number: 2 (lower is better) Translates to: DFSVLTVTQVQLLKSFHCSCNLR*KPPHLA Trigger: GGCCAGGTGTGGTGGCTTGCATCTTAAATTGCAGGA...ACAGTGGAAGGATTTCAAGAGTTGAACTTGAGTCACAGTTAAAACTGAAAAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR-3UTR CCA 90 bp | ACTACAGTTGCACATAATAAAGGAAAAATCCCACCCAAGGAAGGAAACGGAGTCCACATCTTTACTGCCTaGAAATATCCAGGACATTTC | + |
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Preference number: 2 (lower is better) Translates to: TTVAHNKGKIPPKEGNGVHIFTA*KYPGHF Trigger: GAAATGTCCTGGATATTTCCAGGCAGTAAAGATGTG...GACTCCGTTTCCTTCCTTGGGTGGGATTTTTCCTTTATTATGTGCAACTGTAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR-3UTR CCA 90 bp | CAAGATTTTTCTTGTATTTCTAACTCAGAGCAGCTTAAGAAGAGTTGGGGGTGGCATCATTTTAGCATCTaGGTGGCAATACTCAGTAGT | + |
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Preference number: 2 (lower is better) Translates to: QDFSCISNSEQLKKSWGWHHFSI*VAILSS Trigger: ACTACTGAGTATTGCCACCCAGATGCTAAAATGATG...CCACCCCCAACTCTTCTTAAGCTGCTCTGAGTTAGAAATACAAGAAAAATCTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR-3UTR CCA 90 bp | AGCCTAAACTACACTGAGATACTGATGTGTTACTGTATTTTAGTGTCACGAAGTAGACCCTTGAGAAGTTaGTGTACTCTGGAAGGTGAA | + |
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Preference number: 2 (lower is better) Translates to: SLNYTEILMCYCILVSRSRPLRS*CTLEGE Trigger: TTCACCTTCCAGAGTACACCAACTTCTCAAGGGTCT...ACTTCGTGACACTAAAATACAGTAACACATCAGTATCTCAGTGTAGTTTAGGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR-3UTR CCA 90 bp | AACTACACTGAGATACTGATGTGTTACTGTATTTTAGTGTCACGAAGTTCCTCACCATCTGGCAAAGCCTaGGCTAAAAATAACAGGAGA | + |
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Preference number: 2 (lower is better) Translates to: NYTEILMCYCILVSRSSSPSGKA*AKNNRR Trigger: TCTCCTGTTATTTTTAGCCCAGGCTTTGCCAGATGG...TGAGGAACTTCGTGACACTAAAATACAGTAACACATCAGTATCTCAGTGTAGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR-3UTR TCA 90 bp | AACTACACTGAGATACTGATGTGTTACTGTATTTTAGTGTCACGAAGTTCCTCACAGCCTAAACTACACTaGGATACTGATGTGTTACTG | + |
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Preference number: 2 (lower is better) Translates to: NYTEILMCYCILVSRSSSQPKLH*DTDVLL Trigger: CAGTAACACATCAGTATCTCAGTGTAGTTTAGGCTG...TGAGGAACTTCGTGACACTAAAATACAGTAACACATCAGTATCTCAGTGTAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR-3UTR TCA 90 bp | AAACAAATAACAAAACCTACAAATCGCGTACGTTCAAAATTACTTCACCCATCCAAGAGGTGGAGAATCTaGAACCCACCAGAAAAGGAT | + |
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Preference number: 2 (lower is better) Translates to: KQITKPTNRVRSKLLHPSKRWRI*NPPEKD Trigger: ATCCTTTTCTGGTGGGTTTCAGATTCTCCACCTCTT...GGATGGGTGAAGTAATTTTGAACGTACGCGATTTGTAGGTTTTGTTATTTGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR-3UTR CCA 90 bp | AGCCTAAACTACACTGAGATACTGATGTGTTACTGTATTTTAGTGTCACGAAGTCATCATTTTAGCATCTaGGTGGCAATACTCAGTAGT | + |
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Preference number: 2 (lower is better) Translates to: SLNYTEILMCYCILVSRSHHFSI*VAILSS Trigger: ACTACTGAGTATTGCCACCCAGATGCTAAAATGATG...ACTTCGTGACACTAAAATACAGTAACACATCAGTATCTCAGTGTAGTTTAGGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR GCA 72 bp | GAGGCGCCCACAGCGACTTCCAACGTGCCCGTCCACTaGCCGACAGTGGGAGGGAGAAGGCGCGCAGCATCG | + |
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Preference number: 3 (lower is better) Translates to: EAPTATSNVPVH*PTVGGRRRAAS Trigger: CGATGCTGCGCGCCTTCTCCCTCCCACTGTCGGGCAGTGGACGGGCACGTTGGAAGTCGCTGTGGGCGCCTC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR GCA 72 bp | TGCCGAAGCTTTGCCAAGTGCCGGGAGCACGGTGCATaGTCTGTCCGCCCTGACTCGCCGGCATGTGTGCCA | + |
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Preference number: 3 (lower is better) Translates to: CRSFAKCREHGA*SVRPDSPACVP Trigger: TGGCACACATGCCGGCGAGTCAGGGCGGACAGAGCATGCACCGTGCTCCCGGCACTTGGCAAAGCTTCGGCA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR GCA 72 bp | GAAGTCATTAGGAGGCGCCCACAGCGACTTCCAACGTaGCCGTCCACTGCCCGACAGTGGGAGGGAGAAGGC | + |
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Preference number: 3 (lower is better) Translates to: EVIRRRPQRLPT*PSTARQWEGEG Trigger: GCCTTCTCCCTCCCACTGTCGGGCAGTGGACGGGCACGTTGGAAGTCGCTGTGGGCGCCTCCTAATGACTTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR TCA 72 bp | CAAGTGCCGGGAGCACGGTGCATGCTCTGTCCGCCCTaGCTCGCCGGCATGTGTGCCACCAAACCATTTGTT | + |
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Preference number: 3 (lower is better) Translates to: QVPGARCMLCPP*LAGMCATKPFV Trigger: AACAAATGGTTTGGTGGCACACATGCCGGCGAGTCAGGGCGGACAGAGCATGCACCGTGCTCCCGGCACTTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR GCA 72 bp | CACCTGCCTCTGCCTCTCCAGTCCTGCAATTTAAGATaGAAGCCACCACACCTGGCCCCGGGTCCTTGTCAT | + |
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Preference number: 3 (lower is better) Translates to: HLPLPLQSCNLR*KPPHLAPGPCH Trigger: ATGACAAGGACCCGGGGCCAGGTGTGGTGGCTTGCATCTTAAATTGCAGGACTGGAGAGGCAGAGGCAGGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR TCA 72 bp | GGCAGAGTCCTACCTGGTCACAGAGCTAGTGAGGCATaGGTCAGTACTGCCTTGCCACAAACAGCAGCGGGA | + |
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Preference number: 3 (lower is better) Translates to: GRVLPGHRASEA*VSTALPQTAAG Trigger: TCCCGCTGCTGTTTGTGGCAAGGCAGTACTGACTCATGCCTCACTAGCTCTGTGACCAGGTAGGACTCTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR GCA 72 bp | ACCTGGTATGCTGTACAGCCGACGCGGCCAGGCTTCTaGACTGCTGCACGAGAGCCTTTCTGTGAAATTCAT | + |
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Preference number: 3 (lower is better) Translates to: TWYAVQPTRPGF*TAAREPFCEIH Trigger: ATGAATTTCACAGAAAGGCTCTCGTGCAGCAGTGCAGAAGCCTGGCCGCGTCGGCTGTACAGCATACCAGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR-3UTR CAA 90 bp | TTTAGTGTCACGAAGTTCCTCAGTTGCCACCTACTAAGAATTAGGAGAGGAGGCACCAGCCAGGTGGCGTaGAGCACCACGGCGTATCGC | + |
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Preference number: 3 (lower is better) Translates to: FSVTKFLSCHLLRIRRGGTSQVA*STTAYR Trigger: GCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGT...GCCTCCTCTCCTAATTCTTAGTAGGTGGCAACTGAGGAACTTCGTGACACTAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237039.2 |
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| 3UTR GCA 72 bp | GTGCATGCTCTGTCCGCCCTGACTCGCCGGCATGTGTaGCACCAAACCATTTGTTTTGGAATGACTGACAAA | + |
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Preference number: 3 (lower is better) Translates to: VHALSALTRRHV*HQTICFGMTDK Trigger: TTTGTCAGTCATTCCAAAACAAATGGTTTGGTGGCACACATGCCGGCGAGTCAGGGCGGACAGAGCATGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR TCA 72 bp | CCTATAGCTGAGCGGCGGCTGGCTTGGGAGAAGCAATaGGAAACGAGGTCATCAGGGACAAAGCAAAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: PIAERRLAWEKQ*ETRSSGTKQRK Trigger: TTTTCTTTGCTTTGTCCCTGATGACCTCGTTTCTCATTGCTTCTCCCAAGCCAGCCGCCGCTCAGCTATAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR TCA 72 bp | ATCCATGTCCAGCTAACCCTCCAGCCAGGCCAGTTTTaGTCTTGCCACACTTACAGGCTCTCTGGTTTTAAG | + |
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Preference number: 3 (lower is better) Translates to: IHVQLTLQPGQF*SCHTYRLSGFK Trigger: CTTAAAACCAGAGAGCCTGTAAGTGTGGCAAGATCAAAACTGGCCTGGCTGGAGGGTTAGCTGGACATGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR GCA 72 bp | CTGAGTGAGGAAGGTGCCAGGACCACACATCTTTACTaGCTGGAAATATCCAGGACATTTCTGCCTAGACCA | + |
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Preference number: 3 (lower is better) Translates to: LSEEGARTTHLY*LEISRTFLPRP Trigger: TGGTCTAGGCAGAAATGTCCTGGATATTTCCAGGCAGTAAAGATGTGTGGTCCTGGCACCTTCCTCACTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR CCA 72 bp | GTGAGGAAGGTGCCAGGACCACACATCTTTACTGCCTaGAAATATCCAGGACATTTCTGCCTAGACCAAGAC | + |
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Preference number: 3 (lower is better) Translates to: VRKVPGPHIFTA*KYPGHFCLDQD Trigger: GTCTTGGTCTAGGCAGAAATGTCCTGGATATTTCCAGGCAGTAAAGATGTGTGGTCCTGGCACCTTCCTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR TCA 72 bp | TCTCTACCTACTGCAGATAGAGGTTGTATCTCTGAGTaGGGAAGGTGCCAGGACCACACATCTTTACTGCCT | + |
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Preference number: 3 (lower is better) Translates to: SLPTADRGCISE*GRCQDHTSLLP Trigger: AGGCAGTAAAGATGTGTGGTCCTGGCACCTTCCTCACTCAGAGATACAACCTCTATCTGCAGTAGGTAGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR CCA 72 bp | TCTTGTATTTCTAACTCAGAGCAGCTTAAGAAGAGTTaGGGGTGGGGCACGAACCTTTACTGTAGACCCTTG | + |
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Preference number: 3 (lower is better) Translates to: SCISNSEQLKKS*GWGTNLYCRPL Trigger: CAAGGGTCTACAGTAAAGGTTCGTGCCCCACCCCCAACTCTTCTTAAGCTGCTCTGAGTTAGAAATACAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR CCA 72 bp | TTTAGCAAACAGCTGAAGGGTAAGGCTACTTTCAAGTaGGCACAGGAAGGCCCTAAAGCCTCTCTCTATTCA | + |
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Preference number: 3 (lower is better) Translates to: FSKQLKGKATFK*AQEGPKASLYS Trigger: TGAATAGAGAGAGGCTTTAGGGCCTTCCTGTGCCCACTTGAAAGTAGCCTTACCCTTCAGCTGTTTGCTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR TCA 72 bp | TTGGATTCGCCCAAGAATTCTCTTTTAGCAAACAGCTaGAGGGTAAGGCTACTTTCAAGTGGGCACAGGAAG | + |
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Preference number: 3 (lower is better) Translates to: LDSPKNSLLANS*RVRLLSSGHRK Trigger: CTTCCTGTGCCCACTTGAAAGTAGCCTTACCCTTCAGCTGTTTGCTAAAAGAGAATTCTTGGGCGAATCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR GCA 72 bp | GTGTTACTGTATTTTAGTGTCACGAAGTTCCTCAGTTaGCACCTACTAAGAATTAGGAGAGGAGGCGCGCTA | + |
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Preference number: 3 (lower is better) Translates to: VLLYFSVTKFLS*HLLRIRRGGAL Trigger: TAGCGCGCCTCCTCTCCTAATTCTTAGTAGGTGGCAACTGAGGAACTTCGTGACACTAAAATACAGTAACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR CCA 72 bp | AGTTCAACTCTTGAAATCCTTCCACTGTTAGATGTATaGAAACGCCACAGCTATCCTCAATTTGTGGGCACG | + |
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Preference number: 3 (lower is better) Translates to: SSTLEILPLLDV*KRHSYPQFVGT Trigger: CGTGCCCACAAATTGAGGATAGCTGTGGCGTTTCCATACATCTAACAGTGGAAGGATTTCAAGAGTTGAACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR TCA 72 bp | GTAGGTCAGGAATATTATCCCAGTTTCACAGAATACTaGGTCACAGTATTGTTAGGCGAAATGCCCAGTGCT | + |
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Preference number: 3 (lower is better) Translates to: VGQEYYPSFTEY*VTVLLGEMPSA Trigger: AGCACTGGGCATTTCGCCTAACAATACTGTGACTCAGTATTCTGTGAAACTGGGATAATATTCCTGACCTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR TCA 72 bp | AAGGCTCTTCCCTCATTAACATCCTTATCCAAGGAGTaGACTCATTATCGTCAGAGTGGGACTGTTACAAAA | + |
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Preference number: 3 (lower is better) Translates to: KALPSLTSLSKE*THYRQSGTVTK Trigger: TTTTGTAACAGTCCCACTCTGACGATAATGAGTTCACTCCTTGGATAAGGATGTTAATGAGGGAAGAGCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| CDS-3UTR CCA 90 bp | AGACCCTGGGGGTGCAGCTCACGGGACGCTCGAAACCATGAGCGACTGCCCTACCCAAGACAGCAGCCCTaGACACTCTCTTCCGGTCGT | + |
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Preference number: 4 (lower is better) Translates to: RPWGCSSRDARNHERLPYPRQQP*TLSSGR Trigger: ACGACCGGAAGAGAGTGTCCAGGGCTGCTGTCTTGG...GTAGGGCAGTCGCTCATGGTTTCGAGCGTCCCGTGAGCTGCACCCCCAGGGTCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| 3UTR CAA 72 bp | GGAGGGCTGATTAGCCCGCGAAGCTTTGCCGAAGCTTaGCCAAGTGCCGGGAGCACGGTGCATGCTCTGTCC | + |
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Preference number: 4 (lower is better) Translates to: GGLISPRSFAEA*PSAGSTVHALS Trigger: GGACAGAGCATGCACCGTGCTCCCGGCACTTGGCAAAGCTTCGGCAAAGCTTCGCGGGCTAATCAGCCCTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| CDS-3UTR GCA 90 bp | CCAAGACAGCAGCCCTGGACACTCTCTTCCGGTCGTAAGCCAGGCCCAGGAGAGTTCTCGCCTCCATTCTaGTGTCCCCCAGAAGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: PRQQPWTLSSGRKPGPGEFSPPF*CPPEGG Trigger: GCCACCTTCTGGGGGACAGCAGAATGGAGGCGAGAA...CTCTCCTGGGCCTGGCTTACGACCGGAAGAGAGTGTCCAGGGCTGCTGTCTTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000237039.2 |
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| CDS-3UTR TCA 90 bp | GACGGAGCTGAGCCTGTTCATAAGAGATCCCCCTCTCCCACGGCTTTGATGAATTGGCTCCACAGGCGATaGGCCCCGGCTGTGATGCCC | + |
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Preference number: 4 (lower is better) Translates to: DGAEPVHKRSPSPTALMNWLHRR*APAVMP Trigger: GGGCATCACAGCCGGGGCTCATCGCCTGTGGAGCCA...ATTCATCAAAGCCGTGGGAGAGGGGGATCTCTTATGAACAGGCTCAGCTCCGTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| CDS-3UTR TCA 90 bp | TCTGCCAAGCTGGCTTCTGGAACAGGAACTGCAAGACCCCACACTCAGCCGCTCCAGAAGGTGGCGCTGTaGTTGTGGTGGTGGCTGAGT | + |
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Preference number: 4 (lower is better) Translates to: SAKLASGTGTARPHTQPLQKVAL*LWWWLS Trigger: ACTCAGCCACCACCACAATCACAGCGCCACCTTCTG...GAGCGGCTGAGTGTGGGGTCTTGCAGTTCCTGTTCCAGAAGCCAGCTTGGCAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237039.2 |
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| CDS-3UTR TCA 90 bp | GACGGAGCTGAGCCTGTTCATAAGAGATCCCCCTCTCCCACGGCTTTGATGAATCAGAAGGTGGCGCTGTaGTTGTGGTGGTGGCTGAGT | + |
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Preference number: 4 (lower is better) Translates to: DGAEPVHKRSPSPTALMNQKVAL*LWWWLS Trigger: ACTCAGCCACCACCACAATCACAGCGCCACCTTCTG...ATTCATCAAAGCCGTGGGAGAGGGGGATCTCTTATGAACAGGCTCAGCTCCGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR CAA 72 bp | GAGCCTGTTCATAAGAGATCCCCCTCTCCCACGGCTTaGATGAATCATAGCCTGCGTGTTGAACTTGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: EPVHKRSPSPTA*MNHSLRVELGP Trigger: GGGGCCAAGTTCAACACGCAGGCTATGATTCATCAAAGCCGTGGGAGAGGGGGATCTCTTATGAACAGGCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| CDS-3UTR TCA 90 bp | TCTGGCAAAGCCTGGGCTAAAAATAACAGGAGAAATCTCTCAAGATTTTTCTTGTGGCTCCACAGGCGATaGGCCCCGGCTGTGATGCCC | + |
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Preference number: 4 (lower is better) Translates to: SGKAWAKNNRRNLSRFFLWLHRR*APAVMP Trigger: GGGCATCACAGCCGGGGCTCATCGCCTGTGGAGCCA...CAAGAAAAATCTTGAGAGATTTCTCCTGTTATTTTTAGCCCAGGCTTTGCCAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| CDS-3UTR TCA 90 bp | AACTACACTGAGATACTGATGTGTTACTGTATTTTAGTGTCACGAAGTTCCTCACCAGCCAGGTGGCGTTaGGCACCACGGCGTATCGCA | + |
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Preference number: 4 (lower is better) Translates to: NYTEILMCYCILVSRSSSPARWR*APRRIA Trigger: TGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGG...TGAGGAACTTCGTGACACTAAAATACAGTAACACATCAGTATCTCAGTGTAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| CDS-3UTR GCA 90 bp | TCTGGCAAAGCCTGGGCTAAAAATAACAGGAGAAATCTCTCAAGATTTTTCTTGTTCTCGCCTCCATTCTaGTGTCCCCCAGAAGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: SGKAWAKNNRRNLSRFFLFSPPF*CPPEGG Trigger: GCCACCTTCTGGGGGACAGCAGAATGGAGGCGAGAA...CAAGAAAAATCTTGAGAGATTTCTCCTGTTATTTTTAGCCCAGGCTTTGCCAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| CDS-3UTR GCA 90 bp | TCTGGCAAAGCCTGGGCTAAAAATAACAGGAGAAATCTCTCAAGATTTTTCTTGCCTCAGGGGCAGCCGTaGCTTGTATGTTCTGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: SGKAWAKNNRRNLSRFFLPQGQP*LVCSVA Trigger: AGCCACAGAACATACAAGGCACGGCTGCCCCTGAGG...CAAGAAAAATCTTGAGAGATTTCTCCTGTTATTTTTAGCCCAGGCTTTGCCAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| CDS-3UTR GCA 90 bp | AACTACACTGAGATACTGATGTGTTACTGTATTTTAGTGTCACGAAGTTCCTCACCTCAGGGGCAGCCGTaGCTTGTATGTTCTGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: NYTEILMCYCILVSRSSSPQGQP*LVCSVA Trigger: AGCCACAGAACATACAAGGCACGGCTGCCCCTGAGG...TGAGGAACTTCGTGACACTAAAATACAGTAACACATCAGTATCTCAGTGTAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| 3UTR CAA 72 bp | CACAGTATTGTTAGGCGAAATGCCCAGTGCTACGGTTaGAATCTGTCCCATAAGTCATGGGTTGGAAACTTA | + |
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Preference number: 4 (lower is better) Translates to: HSIVRRNAQCYG*NLSHKSWVGNL Trigger: TAAGTTTCCAACCCATGACTTATGGGACAGATTCAAACCGTAGCACTGGGCATTTCGCCTAACAATACTGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| CDS-3UTR CAA 90 bp | TTCCAACGTGCCCGTCCACTGCCCGACAGTGGGAGGGAGAAGGCGCGCAGCATCAGGGGCAGCCGTGCCTaGTATGTTCTGTGGCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: FQRARPLPDSGREKARSIRGSRA*YVLWLH Trigger: GTGGAGCCACAGAACATACAAGGCACGGCTGCCCCT...GATGCTGCGCGCCTTCTCCCTCCCACTGTCGGGCAGTGGACGGGCACGTTGGAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| CDS-3UTR CAA 90 bp | GACTTTTCAGTTTTAACTGTGACTCAAGTTCAACTCTTGAAATCCTTCCACTGTACCAGCCAGGTGGCGTaGAGCACCACGGCGTATCGC | + |
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Preference number: 5 (lower is better) Translates to: DFSVLTVTQVQLLKSFHCTSQVA*STTAYR Trigger: GCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGT...ACAGTGGAAGGATTTCAAGAGTTGAACTTGAGTCACAGTTAAAACTGAAAAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026221.7 |
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| CDS-3UTR CAA 90 bp | AGCCTAAACTACACTGAGATACTGATGTGTTACTGTATTTTAGTGTCACGAAGTAGGGGCAGCCGTGCCTaGTATGTTCTGTGGCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: SLNYTEILMCYCILVSRSRGSRA*YVLWLH Trigger: GTGGAGCCACAGAACATACAAGGCACGGCTGCCCCT...ACTTCGTGACACTAAAATACAGTAACACATCAGTATCTCAGTGTAGTTTAGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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| CDS GCA 72 bp | GAGGGAACCAGTGTGATCCCGTACAAGGCTCCCAAATaGAGCAGGGCCATGAGAATGATGTTCCTCCAGACG | + |
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Preference number: 6 (lower is better) Translates to: EGTSVIPYKAPK*SRAMRMMFLQT Trigger: CGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCATTTGGGAGCCTTGTACGGGATCACACTGGTTCCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026221.7 ENSMUST00000237039.2 |
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