Pregenerated sensors for SCD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037071Ensembl transcript IDs: ENSMUST00000041331.4
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGAGGATCTGGAAGCCACAGAAAGGTGGCACCTGGCTCTGCTTCCTaGAGCTACACAGCTCTTCCACACCCACGGATACTGGGGGAGGAA | + |
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Preference number: 1 (lower is better) Translates to: GGSGSHRKVAPGSAS*SYTALPHPRILGEE Trigger: TTCCTCCCCCAGTATCCGTGGGTGTGGAAGAGCTGTGTAGCTTCAGGAAGCAGAGCCAGGTGCCACCTTTCTGTGGCTTCCAGATCCTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR GCA 90 bp | GAGGTAGGGAGGATCTGGAAGCCACAGAAAGGTGGCACCTGGCTCTaGTTCCTGAAGCTACACAGCTCTTCCACACCCACGGATACTGGG | + |
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Preference number: 1 (lower is better) Translates to: EVGRIWKPQKGGTWL*FLKLHSSSTPTDTG Trigger: CCCAGTATCCGTGGGTGTGGAAGAGCTGTGTAGCTTCAGGAAGCAGAGCCAGGTGCCACCTTTCTGTGGCTTCCAGATCCTCCCTACCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CCA 90 bp | GAAATCACTGTGACAGAGGCACATGAGTTGGAGGTAGGGAGGATCTaGAAGCCACAGAAAGGTGGCACCTGGCTCTGCTTCCTGAAGCTA | + |
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Preference number: 1 (lower is better) Translates to: EITVTEAHELEVGRI*KPQKGGTWLCFLKL Trigger: TAGCTTCAGGAAGCAGAGCCAGGTGCCACCTTTCTGTGGCTTCCAGATCCTCCCTACCTCCAACTCATGTGCCTCTGTCACAGTGATTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR GCA 90 bp | GGGCTTCATCTGGAAATGCACCTCTTAGCAGCTACTTACAGACACTaGCCCTCAACCTCACTAGTTCCTGCCCAGCCACGAAAGAAACTG | + |
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Preference number: 1 (lower is better) Translates to: GLHLEMHLLAATYRH*PSTSLVPAQPRKKL Trigger: CAGTTTCTTTCGTGGCTGGGCAGGAACTAGTGAGGTTGAGGGGCAGTGTCTGTAAGTAGCTGCTAAGAGGTGCATTTCCAGATGAAGCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR GCA 90 bp | AATGGGGAACTTCTTCCTTTCAGCAGCACTGTACCACTACCTGCCTaGATGGATCAGCCAAAGCCACATTACCTTGCAAAGCGCACAGGG | + |
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Preference number: 1 (lower is better) Translates to: NGELLPFSSTVPLPA*MDQPKPHYLAKRTG Trigger: CCCTGTGCGCTTTGCAAGGTAATGTGGCTTTGGCTGATCCATGCAGGCAGGTAGTGGTACAGTGCTGCTGAAAGGAAGAAGTTCCCCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CCA 90 bp | AAGGTGGCCTGGGCTTTGGAGGGTGGACAGACACAGGCCAGTGGTTaGTCAACTATTTGCCTGAAGGTGGTGATGACAGAGAAGAAACAA | + |
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Preference number: 1 (lower is better) Translates to: KVAWALEGGQTQASG*STICLKVVMTEKKQ Trigger: TTGTTTCTTCTCTGTCATCACCACCTTCAGGCAAATAGTTGACCAACCACTGGCCTGTGTCTGTCCACCCTCCAAAGCCCAGGCCACCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CCA 90 bp | AATCAGGTGGGTAAGAGCTTCCTAGGCAGCACTAGGCAGGCTGGGTaGCCACAAAGCAAAGAAGGCATGGAAGGTTCAAAACCATGGGAA | + |
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Preference number: 1 (lower is better) Translates to: NQVGKSFLGSTRQAG*PQSKEGMEGSKPWE Trigger: TTCCCATGGTTTTGAACCTTCCATGCCTTCTTTGCTTTGTGGCCACCCAGCCTGCCTAGTGCTGCCTAGGAAGCTCTTACCCACCTGATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR GCA 90 bp | GGATCAGCCAAAGCCACATTACCTTGCAAAGCGCACAGGGAGAAGTaGATATGCTGTCTACTCCGACACACACCGAGACAGATCAACAAC | + |
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Preference number: 1 (lower is better) Translates to: GSAKATLPCKAHREK*ICCLLRHTPRQINN Trigger: GTTGTTGATCTGTCTCGGTGTGTGTCGGAGTAGACAGCATATGCACTTCTCCCTGTGCGCTTTGCAAGGTAATGTGGCTTTGGCTGATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CCA 90 bp | GAGGAAGGATCAGTATTTCAGAAAACAGAAAGGTGGCCTGGGCTTTaGAGGGTGGACAGACACAGGCCAGTGGTTGGTCAACTATTTGCC | + |
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Preference number: 1 (lower is better) Translates to: EEGSVFQKTERWPGL*RVDRHRPVVGQLFA Trigger: GGCAAATAGTTGACCAACCACTGGCCTGTGTCTGTCCACCCTCCAAAGCCCAGGCCACCTTTCTGTTTTCTGAAATACTGATCCTTCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CCA 90 bp | CTGGGGTGGGTTTGTTACAAGAGAAAGGATAACATAGCAATTCAGTaGCTAAGAGGCACCTTGGCTGGAGCCACCAGCAGATGGTGGCTT | + |
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Preference number: 1 (lower is better) Translates to: LGWVCYKRKDNIAIQ*LRGTLAGATSRWWL Trigger: AAGCCACCATCTGCTGGTGGCTCCAGCCAAGGTGCCTCTTAGCCACTGAATTGCTATGTTATCCTTTCTCTTGTAACAAACCCACCCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CCA 90 bp | GATCAGTATTTCAGAAAACAGAAAGGTGGCCTGGGCTTTGGAGGGTaGACAGACACAGGCCAGTGGTTGGTCAACTATTTGCCTGAAGGT | + |
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Preference number: 1 (lower is better) Translates to: DQYFRKQKGGLGFGG*TDTGQWLVNYLPEG Trigger: ACCTTCAGGCAAATAGTTGACCAACCACTGGCCTGTGTCTGTCCACCCTCCAAAGCCCAGGCCACCTTTCTGTTTTCTGAAATACTGATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CCA 90 bp | TGGGAAGCCAAGTTTCTACACAATCCAAGGAGGAAACTAAAGCAATaGATGGAGCCAACACCATGCGGATCCCTGGCAGATGTTCCCCAA | + |
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Preference number: 1 (lower is better) Translates to: WEAKFLHNPRRKLKQ*MEPTPCGSLADVPQ Trigger: TTGGGGAACATCTGCCAGGGATCCGCATGGTGTTGGCTCCATCCATTGCTTTAGTTTCCTCCTTGGATTGTGTAGAAACTTGGCTTCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CCA 90 bp | TCAACTATTTGCCTGAAGGTGGTGATGACAGAGAAGAAACAAAGCTaGACACCATGCAAACAAACAGGGACTGAGCACCATGCTCACCCT | + |
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Preference number: 1 (lower is better) Translates to: STICLKVVMTEKKQS*TPCKQTGTEHHAHP Trigger: AGGGTGAGCATGGTGCTCAGTCCCTGTTTGTTTGCATGGTGTCCAGCTTTGTTTCTTCTCTGTCATCACCACCTTCAGGCAAATAGTTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR TCA 90 bp | TTTTCATCACACACTGGCTTCAGGAAGCAGACCCTCTTCCTGAAGTaGGGTCCATTAGCACTTGCCCATGTCTCTGGTGTTTTAACAGAT | + |
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Preference number: 1 (lower is better) Translates to: FSSHTGFRKQTLFLK*GPLALAHVSGVLTD Trigger: ATCTGTTAAAACACCAGAGACATGGGCAAGTGCTAATGGACCTCACTTCAGGAAGAGGGTCTGCTTCCTGAAGCCAGTGTGTGATGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR TCA 90 bp | TTCCTGCAATGGTTTTCATGGCAGTGGGTAGGTAGTCTTGCACTTTaGCTGGTCATATCTGTCAGTCTCTGGGAAGAGCAATGTAGACTA | + |
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Preference number: 1 (lower is better) Translates to: FLQWFSWQWVGSLAL*LVISVSLWEEQCRL Trigger: TAGTCTACATTGCTCTTCCCAGAGACTGACAGATATGACCAGTCAAAGTGCAAGACTACCTACCCACTGCCATGAAAACCATTGCAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR GCA 90 bp | CAAATCATACCACGCATGCTAACTTTTCTCTCGAGACAATCTACTTaGTCTGTATCAAATGAAGATAATTTCTCCATCCCATCTAGCACA | + |
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Preference number: 1 (lower is better) Translates to: QIIPRMLTFLSRQST*SVSNEDNFSIPSST Trigger: TGTGCTAGATGGGATGGAGAAATTATCTTCATTTGATACAGAGCAAGTAGATTGTCTCGAGAGAAAAGTTAGCATGCGTGGTATGATTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR TCA 90 bp | AAAGGTGGCACCTGGCTCTGCTTCCTGAAGCTACACAGCTCTTCCACACCCACGAGTCCTGGGTGCTCTTaGTACACTCAGGCAACTAGC | + |
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Preference number: 2 (lower is better) Translates to: KGGTWLCFLKLHSSSTPTSPGCS*YTQATS Trigger: GCTAGTTGCCTGAGTGTATCAAGAGCACCCAGGACT...CGTGGGTGTGGAAGAGCTGTGTAGCTTCAGGAAGCAGAGCCAGGTGCCACCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR CCA 90 bp | TCATCTGGAAATGCACCTCTTAGCAGCTACTTACAGACACTGCCCCTCAACCTCCTGGGCTTTGGAGGGTaGACAGACACAGGCCAGTGG | + |
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Preference number: 2 (lower is better) Translates to: SSGNAPLSSYLQTLPLNLLGFGG*TDTGQW Trigger: CCACTGGCCTGTGTCTGTCCACCCTCCAAAGCCCAG...GAGGTTGAGGGGCAGTGTCTGTAAGTAGCTGCTAAGAGGTGCATTTCCAGATGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR CCA 90 bp | CAGTCACTTTTCATCACACACTGGCTTCAGGAAGCAGACCCTCTTCCTGAAGTGCACACCCACGGATACTaGGGGAGGAACAGGCCTGGA | + |
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Preference number: 2 (lower is better) Translates to: QSLFITHWLQEADPLPEVHTHGY*GRNRPG Trigger: TCCAGGCCTGTTCCTCCCCCAGTATCCGTGGGTGTG...CACTTCAGGAAGAGGGTCTGCTTCCTGAAGCCAGTGTGTGATGAAAAGTGACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CAA 90 bp | GGTCTACCAAGCTTTCCTGAAATCACTGTGACAGAGGCACATGAGTaGGAGGTAGGGAGGATCTGGAAGCCACAGAAAGGTGGCACCTGG | + |
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Preference number: 2 (lower is better) Translates to: GLPSFPEITVTEAHE*EVGRIWKPQKGGTW Trigger: CCAGGTGCCACCTTTCTGTGGCTTCCAGATCCTCCCTACCTCCAACTCATGTGCCTCTGTCACAGTGATTTCAGGAAAGCTTGGTAGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR CCA 90 bp | TCTAGACTTTCCTATAGCACTGTTGGCCCTGGACTGTGTGACAGAGTGTTAGGTAGGTGGCCTGGGCTTTaGAGGGTGGACAGACACAGG | + |
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Preference number: 2 (lower is better) Translates to: SRLSYSTVGPGLCDRVLGRWPGL*RVDRHR Trigger: CCTGTGTCTGTCCACCCTCCAAAGCCCAGGCCACCT...ACCTAACACTCTGTCACACAGTCCAGGGCCAACAGTGCTATAGGAAAGTCTAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CAA 90 bp | AAAGGTGGCCTGGGCTTTGGAGGGTGGACAGACACAGGCCAGTGGTaGGTCAACTATTTGCCTGAAGGTGGTGATGACAGAGAAGAAACA | + |
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Preference number: 2 (lower is better) Translates to: KGGLGFGGWTDTGQW*VNYLPEGGDDREET Trigger: TGTTTCTTCTCTGTCATCACCACCTTCAGGCAAATAGTTGACCAACCACTGGCCTGTGTCTGTCCACCCTCCAAAGCCCAGGCCACCTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CAA 90 bp | GGATGGACAGAAAGGAGGCATGCCAAGCAGAGAGGCCTGGGGTCTTaGGTAAGTAGGCTGTTAGATATGGCTACCTCTCTCTCTCTCTCT | + |
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Preference number: 2 (lower is better) Translates to: GWTERRHAKQRGLGS*VSRLLDMATSLSLS Trigger: AGAGAGAGAGAGAGAGGTAGCCATATCTAACAGCCTACTTACCAAAGACCCCAGGCCTCTCTGCTTGGCATGCCTCCTTTCTGTCCATCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR GCA 90 bp | AAAGGTGGCACCTGGCTCTGCTTCCTGAAGCTACACAGCTCTTCCACACCCACGACTCAGGCAACTAGCTaGATGTCCGGAGAAAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: KGGTWLCFLKLHSSSTPTTQATS*MSGERK Trigger: TTTTCTTTCTCCGGACATGCAGCTAGTTGCCTGAGT...CGTGGGTGTGGAAGAGCTGTGTAGCTTCAGGAAGCAGAGCCAGGTGCCACCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CAA 90 bp | GGAGGAAGGATCAGTATTTCAGAAAACAGAAAGGTGGCCTGGGCTTaGGAGGGTGGACAGACACAGGCCAGTGGTTGGTCAACTATTTGC | + |
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Preference number: 2 (lower is better) Translates to: GGRISISENRKVAWA*EGGQTQASGWSTIC Trigger: GCAAATAGTTGACCAACCACTGGCCTGTGTCTGTCCACCCTCCAAAGCCCAGGCCACCTTTCTGTTTTCTGAAATACTGATCCTTCCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR CCA 90 bp | CAGTCACTTTTCATCACACACTGGCTTCAGGAAGCAGACCCTCTTCCTGAAGTGAGCCACGAAAGAAACTaGCAACCCAGGCAACACCTC | + |
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Preference number: 2 (lower is better) Translates to: QSLFITHWLQEADPLPEVSHERN*QPRQHL Trigger: GAGGTGTTGCCTGGGTTGCCAGTTTCTTTCGTGGCT...CACTTCAGGAAGAGGGTCTGCTTCCTGAAGCCAGTGTGTGATGAAAAGTGACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR CCA 90 bp | AATTTCTCCATCCCATCTAGCACAACCTGCAGTGAACTTCATCAGCGGGGACTTCAGAAAACAGAAAGGTaGCCTGGGCTTTGGAGGGTG | + |
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Preference number: 2 (lower is better) Translates to: NFSIPSSTTCSELHQRGLQKTER*PGLWRV Trigger: CACCCTCCAAAGCCCAGGCCACCTTTCTGTTTTCTG...AAGTCCCCGCTGATGAAGTTCACTGCAGGTTGTGCTAGATGGGATGGAGAAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR CCA 90 bp | CAGTCACTTTTCATCACACACTGGCTTCAGGAAGCAGACCCTCTTCCTGAAGTGGACAGCAGCAAGTCCTaGGTGCTCTTGATACACTCA | + |
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Preference number: 2 (lower is better) Translates to: QSLFITHWLQEADPLPEVDSSKS*VLLIHS Trigger: TGAGTGTATCAAGAGCACCCAGGACTTGCTGCTGTC...CACTTCAGGAAGAGGGTCTGCTTCCTGAAGCCAGTGTGTGATGAAAAGTGACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR GCA 90 bp | AGGTTCAAAACCATGGGAAGCCAAGTTTCTACACAATCCAAGGAGGAAACTAAAGACAGAAAGGAGGCATaGCAAGCAGAGAGGCCTGGG | + |
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Preference number: 2 (lower is better) Translates to: RFKTMGSQVSTQSKEETKDRKEA*QAERPG Trigger: CCCAGGCCTCTCTGCTTGGCATGCCTCCTTTCTGTC...TTTAGTTTCCTCCTTGGATTGTGTAGAAACTTGGCTTCCCATGGTTTTGAACCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR CCA 90 bp | AATTTCTCCATCCCATCTAGCACAACCTGCAGTGAACTTCATCAGCGGGGACTTACAGACACAGGCCAGTaGTTGGTCAACTATTTGCCT | + |
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Preference number: 2 (lower is better) Translates to: NFSIPSSTTCSELHQRGLTDTGQ*LVNYLP Trigger: AGGCAAATAGTTGACCAACCACTGGCCTGTGTCTGT...AAGTCCCCGCTGATGAAGTTCACTGCAGGTTGTGCTAGATGGGATGGAGAAATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR TCA 90 bp | AACGATGGTCTCAGGAACATATATAGTTCTTTGGGAGTCTGTATGAATACCTCTGCTCTATCCCTAGTTTaGGGCAGCAGTCTTGAAGCT | + |
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Preference number: 2 (lower is better) Translates to: NDGLRNIYSSLGVCMNTSALSLV*GSSLEA Trigger: AGCTTCAAGACTGCTGCCTCAAACTAGGGATAGAGC...AGAGGTATTCATACAGACTCCCAAAGAACTATATATGTTCCTGAGACCATCGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR TCA 90 bp | AAGGAGGGATGTATTCAGGAGGAAGGATCAGTATTTCAGAAAACAGAAAGGTGGCATGTTCCTTGGCTTTaGTCCTCTCTGTATAGAATG | + |
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Preference number: 2 (lower is better) Translates to: KEGCIQEEGSVFQKTERWHVPWL*SSLYRM Trigger: CATTCTATACAGAGAGGATCAAAGCCAAGGAACATG...CCACCTTTCTGTTTTCTGAAATACTGATCCTTCCTCCTGAATACATCCCTCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CAA 90 bp | GAGCAATGTAGACTAAACGATGGTCTCAGGAACATATATAGTTCTTaGGGAGTCTGTATGAATACCTCTGCTGAGGATCCCCAAATACTT | + |
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Preference number: 2 (lower is better) Translates to: EQCRLNDGLRNIYSS*GVCMNTSAEDPQIL Trigger: AAGTATTTGGGGATCCTCAGCAGAGGTATTCATACAGACTCCCAAAGAACTATATATGTTCCTGAGACCATCGTTTAGTCTACATTGCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR TCA 90 bp | AACGATGGTCTCAGGAACATATATAGTTCTTTGGGAGTCTGTATGAATACCTCTATTCTACAAGTGAACTaGGTGTTTGGCACCTTACAC | + |
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Preference number: 2 (lower is better) Translates to: NDGLRNIYSSLGVCMNTSILQVN*VFGTLH Trigger: GTGTAAGGTGCCAAACACTCAGTTCACTTGTAGAAT...AGAGGTATTCATACAGACTCCCAAAGAACTATATATGTTCCTGAGACCATCGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR CCA 90 bp | AACGATGGTCTCAGGAACATATATAGTTCTTTGGGAGTCTGTATGAATACCTCTGAGAAGAAACAAAGCTaGACACCATGCAAACAAACA | + |
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Preference number: 2 (lower is better) Translates to: NDGLRNIYSSLGVCMNTSEKKQS*TPCKQT Trigger: TGTTTGTTTGCATGGTGTCCAGCTTTGTTTCTTCTC...AGAGGTATTCATACAGACTCCCAAAGAACTATATATGTTCCTGAGACCATCGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR TCA 72 bp | GGAAGCCACAGAAAGGTGGCACCTGGCTCTGCTTCCTaGAGCTACACAGCTCTTCCACACCCACGGATACTG | + |
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Preference number: 3 (lower is better) Translates to: GSHRKVAPGSAS*SYTALPHPRIL Trigger: CAGTATCCGTGGGTGTGGAAGAGCTGTGTAGCTTCAGGAAGCAGAGCCAGGTGCCACCTTTCTGTGGCTTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CCA 72 bp | GGCCTGGGCTTTGGAGGGTGGACAGACACAGGCCAGTaGTTGGTCAACTATTTGCCTGAAGGTGGTGATGAC | + |
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Preference number: 3 (lower is better) Translates to: GLGFGGWTDTGQ*LVNYLPEGGDD Trigger: GTCATCACCACCTTCAGGCAAATAGTTGACCAACCACTGGCCTGTGTCTGTCCACCCTCCAAAGCCCAGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR CAA 90 bp | CATCTGGAAATGCACCTCTTAGCAGCTACTTACAGACACTGCCCCTCAACCTCAAAGGTGGCCTGGGCTTaGGAGGGTGGACAGACACAG | + |
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Preference number: 3 (lower is better) Translates to: HLEMHLLAATYRHCPSTSKVAWA*EGGQTQ Trigger: CTGTGTCTGTCCACCCTCCAAAGCCCAGGCCACCTT...TGAGGTTGAGGGGCAGTGTCTGTAAGTAGCTGCTAAGAGGTGCATTTCCAGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR GCA 72 bp | CTGGAAATGCACCTCTTAGCAGCTACTTACAGACACTaGCCCTCAACCTCACTAGTTCCTGCCCAGCCACGA | + |
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Preference number: 3 (lower is better) Translates to: LEMHLLAATYRH*PSTSLVPAQPR Trigger: TCGTGGCTGGGCAGGAACTAGTGAGGTTGAGGGGCAGTGTCTGTAAGTAGCTGCTAAGAGGTGCATTTCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR GCA 72 bp | AGGAGGAAACTAAAGCAATGGATGGAGCCAACACCATaGGGATCCCTGGCAGATGTTCCCCAAGGGCTTCAT | + |
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Preference number: 3 (lower is better) Translates to: RRKLKQWMEPTP*GSLADVPQGLH Trigger: ATGAAGCCCTTGGGGAACATCTGCCAGGGATCCGCATGGTGTTGGCTCCATCCATTGCTTTAGTTTCCTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR CAA 90 bp | CAGTCACTTTTCATCACACACTGGCTTCAGGAAGCAGACCCTCTTCCTGAAGTGACAGAGGCACATGAGTaGGAGGTAGGGAGGATCTGG | + |
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Preference number: 3 (lower is better) Translates to: QSLFITHWLQEADPLPEVTEAHE*EVGRIW Trigger: CCAGATCCTCCCTACCTCCAACTCATGTGCCTCTGT...CACTTCAGGAAGAGGGTCTGCTTCCTGAAGCCAGTGTGTGATGAAAAGTGACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR TCA 72 bp | GAACTTCATCAGCGGGGACTTGCTCTATCCCTAGTTTaGGGCAGCAGTCTTGAAGCTAGGAACAAGGAGGGA | + |
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Preference number: 3 (lower is better) Translates to: ELHQRGLALSLV*GSSLEARNKEG Trigger: TCCCTCCTTGTTCCTAGCTTCAAGACTGCTGCCTCAAACTAGGGATAGAGCAAGTCCCCGCTGATGAAGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR GCA 72 bp | AAAGCCACATTACCTTGCAAAGCGCACAGGGAGAAGTaGATATGCTGTCTACTCCGACACACACCGAGACAG | + |
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Preference number: 3 (lower is better) Translates to: KATLPCKAHREK*ICCLLRHTPRQ Trigger: CTGTCTCGGTGTGTGTCGGAGTAGACAGCATATGCACTTCTCCCTGTGCGCTTTGCAAGGTAATGTGGCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CCA 72 bp | TCAGTATTTCAGAAAACAGAAAGGTGGCCTGGGCTTTaGAGGGTGGACAGACACAGGCCAGTGGTTGGTCAA | + |
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Preference number: 3 (lower is better) Translates to: SVFQKTERWPGL*RVDRHRPVVGQ Trigger: TTGACCAACCACTGGCCTGTGTCTGTCCACCCTCCAAAGCCCAGGCCACCTTTCTGTTTTCTGAAATACTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CCA 72 bp | CTAGGCAGGCTGGGTGGCCACAAAGCAAAGAAGGCATaGAAGGTTCAAAACCATGGGAAGCCAAGTTTCTAC | + |
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Preference number: 3 (lower is better) Translates to: LGRLGGHKAKKA*KVQNHGKPSFY Trigger: GTAGAAACTTGGCTTCCCATGGTTTTGAACCTTCCATGCCTTCTTTGCTTTGTGGCCACCCAGCCTGCCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CCA 72 bp | TTCCTTTCAGCAGCACTGTACCACTACCTGCCTGCATaGATCAGCCAAAGCCACATTACCTTGCAAAGCGCA | + |
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Preference number: 3 (lower is better) Translates to: FLSAALYHYLPA*ISQSHITLQSA Trigger: TGCGCTTTGCAAGGTAATGTGGCTTTGGCTGATCCATGCAGGCAGGTAGTGGTACAGTGCTGCTGAAAGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR CAA 90 bp | AACCTCACTAGTTCCTGCCCAGCCACGAAAGAAACTGGCAACCCAGGCAACACCAAAACAGCATGTTCCTaGGCTTTGATCCTCTCTGTA | + |
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Preference number: 3 (lower is better) Translates to: NLTSSCPATKETGNPGNTKTACS*ALILSV Trigger: TACAGAGAGGATCAAAGCCAAGGAACATGCTGTTTT...GGTGTTGCCTGGGTTGCCAGTTTCTTTCGTGGCTGGGCAGGAACTAGTGAGGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR TCA 72 bp | TGGTTTTCATGGCAGTGGGTAGGTAGTCTTGCACTTTaGCTGGTCATATCTGTCAGTCTCTGGGAAGAGCAA | + |
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Preference number: 3 (lower is better) Translates to: WFSWQWVGSLAL*LVISVSLWEEQ Trigger: TTGCTCTTCCCAGAGACTGACAGATATGACCAGTCAAAGTGCAAGACTACCTACCCACTGCCATGAAAACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR TCA 72 bp | TTTTTGTCAGCACTCTCCCAGAGTGTCCTCCTGAGCTaGTGCTATGGACACTTAATTCACACTGTTGAGATG | + |
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Preference number: 3 (lower is better) Translates to: FLSALSQSVLLS*CYGHLIHTVEM Trigger: CATCTCAACAGTGTGAATTAAGTGTCCATAGCATCAGCTCAGGAGGACACTCTGGGAGAGTGCTGACAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR GCA 72 bp | AATGAAGATAATTTCTCCATCCCATCTAGCACAACCTaGAGTGAACTTCATCAGCGGGGACTTGCTCTATCC | + |
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Preference number: 3 (lower is better) Translates to: NEDNFSIPSSTT*SELHQRGLALS Trigger: GGATAGAGCAAGTCCCCGCTGATGAAGTTCACTGCAGGTTGTGCTAGATGGGATGGAGAAATTATCTTCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CCA 72 bp | AAAATCTCATTCAGGGAAGGGAAAGGTTTCCTGCAATaGTTTTCATGGCAGTGGGTAGGTAGTCTTGCACTT | + |
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Preference number: 3 (lower is better) Translates to: KISFREGKGFLQ*FSWQWVGSLAL Trigger: AAGTGCAAGACTACCTACCCACTGCCATGAAAACCATTGCAGGAAACCTTTCCCTTCCCTGAATGAGATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR TCA 72 bp | GTCTCAGGAACATATATAGTTCTTTGGGAGTCTGTATaGATACCTCTGCTGAGGATCCCCAAATACTTGGTT | + |
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Preference number: 3 (lower is better) Translates to: VSGTYIVLWESV*IPLLRIPKYLV Trigger: AACCAAGTATTTGGGGATCCTCAGCAGAGGTATTCATACAGACTCCCAAAGAACTATATATGTTCCTGAGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR-3UTR CAA 90 bp | AACGATGGTCTCAGGAACATATATAGTTCTTTGGGAGTCTGTATGAATACCTCTTCTGCCAGAAAACGTTaGAAACAGGAACTCAGAAGC | + |
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Preference number: 3 (lower is better) Translates to: NDGLRNIYSSLGVCMNTSSARKR*KQELRS Trigger: GCTTCTGAGTTCCTGTTTCAAACGTTTTCTGGCAGA...AGAGGTATTCATACAGACTCCCAAAGAACTATATATGTTCCTGAGACCATCGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR GCA 72 bp | CCACGCATGCTAACTTTTCTCTCGAGACAATCTACTTaGTCTGTATCAAATGAAGATAATTTCTCCATCCCA | + |
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Preference number: 3 (lower is better) Translates to: PRMLTFLSRQST*SVSNEDNFSIP Trigger: TGGGATGGAGAAATTATCTTCATTTGATACAGAGCAAGTAGATTGTCTCGAGAGAAAAGTTAGCATGCGTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CAA 72 bp | AGGCACCTTGGCTGGAGCCACCAGCAGATGGTGGCTTaGCTAACCTTTCACACCACCTCACTGGAGCTACAG | + |
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Preference number: 4 (lower is better) Translates to: RHLGWSHQQMVA*LTFHTTSLELQ Trigger: CTGTAGCTCCAGTGAGGTGGTGTGAAAGGTTAGCAAAGCCACCATCTGCTGGTGGCTCCAGCCAAGGTGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| CDS-3UTR TCA 90 bp | TCTAGACTTTCCTATAGCACTGTTGGCCCTGGACTGTGTGACAGAGTGTTAGGTCCAGCCAGGTGGCGTTaGGCACCAGAGTGTATCGCA | + |
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Preference number: 4 (lower is better) Translates to: SRLSYSTVGPGLCDRVLGPARWR*APECIA Trigger: TGCGATACACTCTGGTGCTCAACGCCACCTGGCTGG...ACCTAACACTCTGTCACACAGTCCAGGGCCAACAGTGCTATAGGAAAGTCTAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CAA 72 bp | GAAAGGAGGCATGCCAAGCAGAGAGGCCTGGGGTCTTaGGTAAGTAGGCTGTTAGATATGGCTACCTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: ERRHAKQRGLGS*VSRLLDMATSL Trigger: GAGAGAGGTAGCCATATCTAACAGCCTACTTACCAAAGACCCCAGGCCTCTCTGCTTGGCATGCCTCCTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CAA 72 bp | ATCAGTATTTCAGAAAACAGAAAGGTGGCCTGGGCTTaGGAGGGTGGACAGACACAGGCCAGTGGTTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: ISISENRKVAWA*EGGQTQASGWS Trigger: TGACCAACCACTGGCCTGTGTCTGTCCACCCTCCAAAGCCCAGGCCACCTTTCTGTTTTCTGAAATACTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CAA 72 bp | CCTTACACAGCCAGTTCTAAAAACCAGGCCTCTGGATaGGGCTATAGGGACAAGAGATGGTTGATGGTTCTA | + |
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Preference number: 4 (lower is better) Translates to: PYTASSKNQASG*GYRDKRWLMVL Trigger: TAGAACCATCAACCATCTCTTGTCCCTATAGCCCAATCCAGAGGCCTGGTTTTTAGAACTGGCTGTGTAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CAA 72 bp | TACTTAAAGACACCAGGACCTCAATGTAGCCTTGCTTaGGAACATGGCCTGAATCAGATCTGGGGAATAAGA | + |
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Preference number: 4 (lower is better) Translates to: YLKTPGPQCSLA*EHGLNQIWGIR Trigger: TCTTATTCCCCAGATCTGATTCAGGCCATGTTCCAAAGCAAGGCTACATTGAGGTCCTGGTGTCTTTAAGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| 3UTR CAA 72 bp | GAGACTGTCAGATACTTAGCCCAGGAGTTTCTTGGGTaGATTAAAGGCTTTATCTCTGGGGTGGGTTTGTTA | + |
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Preference number: 4 (lower is better) Translates to: ETVRYLAQEFLG*IKGFISGVGLL Trigger: TAACAAACCCACCCCAGAGATAAAGCCTTTAATCAACCCAAGAAACTCCTGGGCTAAGTATCTGACAGTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| CDS-3UTR CCA 90 bp | AACGATGGTCTCAGGAACATATATAGTTCTTTGGGAGTCTGTATGAATACCTCTTGGTCGTGTAAGAACTaGAGATCTCTTGGAGCATGT | + |
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Preference number: 4 (lower is better) Translates to: NDGLRNIYSSLGVCMNTSWSCKN*RSLGAC Trigger: ACATGCTCCAAGAGATCTCCAGTTCTTACACGACCA...AGAGGTATTCATACAGACTCCCAAAGAACTATATATGTTCCTGAGACCATCGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| CDS-3UTR CAA 90 bp | AGCTTCCTAGGCAGCACTAGGCAGGCTGGGTGGCCACAAAGCAAAGAAGGCATGACCAGCCAGGTGGCGTaGAGCACCAGAGTGTATCGC | + |
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Preference number: 5 (lower is better) Translates to: SFLGSTRQAGWPQSKEGMTSQVA*STRVYR Trigger: GCGATACACTCTGGTGCTCAACGCCACCTGGCTGGT...CATGCCTTCTTTGCTTTGTGGCCACCCAGCCTGCCTAGTGCTGCCTAGGAAGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| CDS TCA 90 bp | GTGCCTTGTAAGTTCTGTGGCTCCAGAGGCGATGAGCCCCGGCTGTaGTGCCCAGAGCGCTGGTCATGTAGTAGAAAATCCCGAAGAGGC | + |
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Preference number: 5 (lower is better) Translates to: VPCKFCGSRGDEPRL*CPERWSCSRKSRRG Trigger: GCCTCTTCGGGATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| CDS GCA 90 bp | GAGGGGCACCGTCTTCACCTTCTCTCGTTCATTTCCGGAGGGAGGTaGAGTGATGGTGGTGGTGGTCGTGTAAGAACTGGAGATCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: EGHRLHLLSFISGGR*SDGGGGRVRTGDLL Trigger: CAAGAGATCTCCAGTTCTTACACGACCACCACCACCATCACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| CDS GCA 90 bp | AGCTTGCAGGAGGGAACCAGTATGATCCCGTACAGGCCTCCCAAGTaGAGCAGGACCATGAGAATGATGTTCCTCCAGACGTACTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: SLQEGTSMIPYRPPK*SRTMRMMFLQTYSS Trigger: GCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| CDS-3UTR CAA 90 bp | GGGTGGCCACAAAGCAAAGAAGGCATGGAAGGTTCAAAACCATGGGAAGCCAAGAGAACTGGAGATCTCTaGGAGCATGTGGGCCGGCAT | + |
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Preference number: 5 (lower is better) Translates to: GWPQSKEGMEGSKPWEAKRTGDL*EHVGRH Trigger: ATGCCGGCCCACATGCTCCAAGAGATCTCCAGTTCT...CTTGGCTTCCCATGGTTTTGAACCTTCCATGCCTTCTTTGCTTTGTGGCCACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| CDS CCA 90 bp | AGACGTACTCCAGCTTGGGCGGGGGTCCCTCCTCATCCTGATAGGTaGGGTCGTGAATATCTTCTTTCATTTCAGGACGGATGTCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: RRTPAWAGVPPHPDR*GREYLLSFQDGCLL Trigger: AAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| CDS-3UTR CAA 90 bp | AAGGAGGGATGTATTCAGGAGGAAGGATCAGTATTTCAGAAAACAGAAAGGTGGGATATTCTCCCGGGATaGAATGTTCTTGTCGTAGGG | + |
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Preference number: 5 (lower is better) Translates to: KEGCIQEEGSVFQKTERWDILPG*NVLVVG Trigger: CCCTACGACAAGAACATTCAATCCCGGGAGAATATC...CCACCTTTCTGTTTTCTGAAATACTGATCCTTCCTCCTGAATACATCCCTCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| CDS GCA 72 bp | GAGGGAACCAGTATGATCCCGTACAGGCCTCCCAAGTaGAGCAGGACCATGAGAATGATGTTCCTCCAGACG | + |
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Preference number: 6 (lower is better) Translates to: EGTSMIPYRPPK*SRTMRMMFLQT Trigger: CGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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| CDS CCA 72 bp | CCAGCTTGGGCGGGGGTCCCTCCTCATCCTGATAGGTaGGGTCGTGAATATCTTCTTTCATTTCAGGACGGA | + |
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Preference number: 6 (lower is better) Translates to: PAWAGVPPHPDR*GREYLLSFQDG Trigger: TCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041331.4 |
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