Pregenerated sensors for SCCPDH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038936Ensembl transcript IDs: ENSMUST00000040538.10, ENSMUST00000134287.2, ENSMUST00000143936.2, ENSMUST00000144480.8
Found 113 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCCATGTTTGTTGAGTCTGTCAATCAACTTTGTTCTGGAGAAAGCTaGTCCAGGTGTAAAGACACCGCCCCCTTTTGGAAGGTCAGAGGC | + |
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Preference number: 1 (lower is better) Translates to: AMFVESVNQLCSGES*SRCKDTAPFWKVRG Trigger: GCCTCTGACCTTCCAAAAGGGGGCGGTGTCTTTACACCTGGAGCAGCTTTCTCCAGAACAAAGTTGATTGACAGACTCAACAAACATGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR CCA 90 bp | GTAGCCAGCCTCTGGTCCCTTCACTTGAGTGCAGATTCGGATATTTaGTTTGTTCTTTTCAACACAAGTGCCATGGCTGTATCCTTGACC | + |
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Preference number: 1 (lower is better) Translates to: VASLWSLHLSADSDI*FVLFNTSAMAVSLT Trigger: GGTCAAGGATACAGCCATGGCACTTGTGTTGAAAAGAACAAACCAAATATCCGAATCTGCACTCAAGTGAAGGGACCAGAGGCTGGCTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR TCA 90 bp | ATATTTGGTTTGTTCTTTTCAACACAAGTGCCATGGCTGTATCCTTaGCCAAAGAATGTCATTGTAAATGATGTCTCATCCATCTGTTTT | + |
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Preference number: 1 (lower is better) Translates to: IFGLFFSTQVPWLYP*PKNVIVNDVSSICF Trigger: AAAACAGATGGATGAGACATCATTTACAATGACATTCTTTGGTCAAGGATACAGCCATGGCACTTGTGTTGAAAAGAACAAACCAAATAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR-3UTR TCA 90 bp | GATTCCACAACACCAGGGCAGGGAAGGCAGACTCTACTGCCACAGCCTAACAGCGCTCTCTTCACCATCTaGCCTTCCAGTTCACTTGTC | + |
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Preference number: 2 (lower is better) Translates to: DSTTPGQGRQTLLPQPNSALFTI*PSSSLV Trigger: GACAAGTGAACTGGAAGGTCAGATGGTGAAGAGAGC...GCTGTTAGGCTGTGGCAGTAGAGTCTGCCTTCCCTGCCCTGGTGTTGTGGAATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| 3UTR-3UTR TCA 90 bp | AGGGTGAGATTCCACAACACCAGGGCAGGGAAGGCAGACTCTACTGCCACAGCCTTCCAGGTTCCATCATaGATACACAACCCCTCAGGT | + |
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Preference number: 2 (lower is better) Translates to: RVRFHNTRAGKADSTATAFQVPS*IHNPSG Trigger: ACCTGAGGGGTTGTGTATTCATGATGGAACCTGGAA...GGCTGTGGCAGTAGAGTCTGCCTTCCCTGCCCTGGTGTTGTGGAATCTCACCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR-3UTR GCA 90 bp | GATTCCACAACACCAGGGCAGGGAAGGCAGACTCTACTGCCACAGCCTAACAGCTCCGTCACTAAGGAATaGTGTCAGCAACACCAACAG | + |
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Preference number: 2 (lower is better) Translates to: DSTTPGQGRQTLLPQPNSSVTKE*CQQHQQ Trigger: CTGTTGGTGTTGCTGACAGCATTCCTTAGTGACGGA...GCTGTTAGGCTGTGGCAGTAGAGTCTGCCTTCCCTGCCCTGGTGTTGTGGAATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| 3UTR-3UTR TCA 90 bp | CGCTCACATGCTACGCAGAGGAACTTAGAGGAGGGTGAGATTCCACAACACCAGGCTCTCTTCACCATCTaGCCTTCCAGTTCACTTGTC | + |
|
Preference number: 2 (lower is better) Translates to: RSHATQRNLEEGEIPQHQALFTI*PSSSLV Trigger: GACAAGTGAACTGGAAGGTCAGATGGTGAAGAGAGC...CTGGTGTTGTGGAATCTCACCCTCCTCTAAGTTCCTCTGCGTAGCATGTGAGCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| 3UTR-3UTR GCA 90 bp | TGTTCTGGAGAAAGCTGCTCCAGGTGTAAAGACACCGCCCCCTTTTGGAAGGTCTCCGTCACTAAGGAATaGTGTCAGCAACACCAACAG | + |
|
Preference number: 2 (lower is better) Translates to: CSGESCSRCKDTAPFWKVSVTKE*CQQHQQ Trigger: CTGTTGGTGTTGCTGACAGCATTCCTTAGTGACGGA...GACCTTCCAAAAGGGGGCGGTGTCTTTACACCTGGAGCAGCTTTCTCCAGAACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR CAA 90 bp | CGTAGCCAGCCTCTGGTCCCTTCACTTGAGTGCAGATTCGGATATTaGGTTTGTTCTTTTCAACACAAGTGCCATGGCTGTATCCTTGAC | + |
|
Preference number: 2 (lower is better) Translates to: RSQPLVPSLECRFGY*VCSFQHKCHGCILD Trigger: GTCAAGGATACAGCCATGGCACTTGTGTTGAAAAGAACAAACCAAATATCCGAATCTGCACTCAAGTGAAGGGACCAGAGGCTGGCTACG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR-3UTR CCA 90 bp | GTCACTAAGGAATGCTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTGACTCTACAATAGCTGACTaGCCACCTTCTTTTCAACTT | + |
|
Preference number: 2 (lower is better) Translates to: VTKECCQQHQQGLSSPSDSTIAD*PPSFQL Trigger: AAGTTGAAAAGAAGGTGGCCAGTCAGCTATTGTAGA...GTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAGCATTCCTTAGTGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR-3UTR TCA 90 bp | AGAAAGCAGACTGAAGTAGAAGTACAGTTTCACTTAGCAAACGCTCACATGCTAGAACTTAGAGGAGGGTaGGATTCCACAACACCAGGG | + |
|
Preference number: 2 (lower is better) Translates to: RKQTEVEVQFHLANAHMLELRGG*DSTTPG Trigger: CCCTGGTGTTGTGGAATCTCACCCTCCTCTAAGTTC...TAGCATGTGAGCGTTTGCTAAGTGAAACTGTACTTCTACTTCAGTCTGCTTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| 3UTR-3UTR TCA 90 bp | TCACTTAGCAAACGCTCACATGCTACGCAGAGGAACTTAGAGGAGGGTGAGATTGCCATGGGAATTTTATaGGAAGTTGTCTTCCAATGC | + |
|
Preference number: 2 (lower is better) Translates to: SLSKRSHATQRNLEEGEIAMGIL*EVVFQC Trigger: GCATTGGAAGACAACTTCTCATAAAATTCCCATGGC...AATCTCACCCTCCTCTAAGTTCCTCTGCGTAGCATGTGAGCGTTTGCTAAGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR-3UTR GCA 90 bp | AATGGAATACGAGTTCAGCTCTCTACAATAGCTGACTGGCCACCTTCTTTTCAAGCCAAAACCATAAATTaGCGACTTCCAGGTTCCATC | + |
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Preference number: 2 (lower is better) Translates to: NGIRVQLSTIADWPPSFQAKTIN*RLPGSI Trigger: GATGGAACCTGGAAGTCGGCAATTTATGGTTTTGGC...TTGAAAAGAAGGTGGCCAGTCAGCTATTGTAGAGAGCTGAACTCGTATTCCATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR-3UTR CCA 90 bp | TCACTTAGCAAACGCTCACATGCTACGCAGAGGAACTTAGAGGAGGGTGAGATTAAAGGAAAAGAGCCATaGGAATTTTATGAGAAGTTG | + |
|
Preference number: 2 (lower is better) Translates to: SLSKRSHATQRNLEEGEIKGKEP*EFYEKL Trigger: CAACTTCTCATAAAATTCCCATGGCTCTTTTCCTTT...AATCTCACCCTCCTCTAAGTTCCTCTGCGTAGCATGTGAGCGTTTGCTAAGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR-3UTR TCA 90 bp | AATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTAGTCGGTGAGAAAGCAGACTaGAGTAGAAGTACAGTTTCA | + |
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Preference number: 2 (lower is better) Translates to: NFTYQIQTRFVHFMIRLVGEKAD*SRSTVS Trigger: TGAAACTGTACTTCTACTTCAGTCTGCTTTCTCACC...GACTAACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| 3UTR-3UTR TCA 90 bp | AAACGTTTAGACTTCGGAGCTGCTAATGACACTAAATTCAATGCCATGTTTGTTCAGATATTTTATACTTaGCAGTCCACATACAGTCAG | + |
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Preference number: 2 (lower is better) Translates to: KRLDFGAANDTKFNAMFVQIFYT*QSTYSQ Trigger: CTGACTGTATGTGGACTGTCAAGTATAAAATATCTG...AACAAACATGGCATTGAATTTAGTGTCATTAGCAGCTCCGAAGTCTAAACGTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR-3UTR TCA 90 bp | AATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTAGTCCAGATATTTTATACTTaGCAGTCCACATACAGTCAG | + |
|
Preference number: 2 (lower is better) Translates to: NFTYQIQTRFVHFMIRLVQIFYT*QSTYSQ Trigger: CTGACTGTATGTGGACTGTCAAGTATAAAATATCTG...GACTAACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 ENSMUST00000144480.8 |
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| 3UTR CCA 72 bp | AACCATGGCTATGGGAGTAGCCACGTAGCCAGCCTCTaGTCCCTTCACTTGAGTGCAGATTCGGATATTTGG | + |
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Preference number: 3 (lower is better) Translates to: NHGYGSSHVASL*SLHLSADSDIW Trigger: CCAAATATCCGAATCTGCACTCAAGTGAAGGGACCAGAGGCTGGCTACGTGGCTACTCCCATAGCCATGGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR GCA 72 bp | GTTGAGTCTGTCAATCAACTTTGTTCTGGAGAAAGCTaGTCCAGGTGTAAAGACACCGCCCCCTTTTGGAAG | + |
|
Preference number: 3 (lower is better) Translates to: VESVNQLCSGES*SRCKDTAPFWK Trigger: CTTCCAAAAGGGGGCGGTGTCTTTACACCTGGAGCAGCTTTCTCCAGAACAAAGTTGATTGACAGACTCAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR-3UTR CAA 90 bp | CGCTCACATGCTACGCAGAGGAACTTAGAGGAGGGTGAGATTCCACAACACCAGACCTTCTTTTCAACTTaGTACCAACAATTGGGACAG | + |
|
Preference number: 3 (lower is better) Translates to: RSHATQRNLEEGEIPQHQTFFST*YQQLGQ Trigger: CTGTCCCAATTGTTGGTACAAAGTTGAAAAGAAGGT...CTGGTGTTGTGGAATCTCACCCTCCTCTAAGTTCCTCTGCGTAGCATGTGAGCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR-3UTR CAA 90 bp | GCTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTGACCTTCCAGTTCACTAATTCAATGCCATGTTaGTTGAGTCTGTCAATCAAC | + |
|
Preference number: 3 (lower is better) Translates to: AVSNTNRGSLHHLTFQFTNSMPC*LSLSIN Trigger: GTTGATTGACAGACTCAACAAACATGGCATTGAATT...AGTGAACTGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR TCA 72 bp | CTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTaGCCTTCCAGTTCACTTGTCAATAAAAACGTAAGG | + |
|
Preference number: 3 (lower is better) Translates to: LSATPTGALFTI*PSSSLVNKNVR Trigger: CCTTACGTTTTTATTGACAAGTGAACTGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| 3UTR-3UTR CAA 90 bp | AATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTAGTCAGACACCGCCCCCTTTaGGAAGGTCAGAGGCGTCAC | + |
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Preference number: 3 (lower is better) Translates to: NFTYQIQTRFVHFMIRLVRHRPL*EGQRRH Trigger: GTGACGCCTCTGACCTTCCAAAAGGGGGCGGTGTCT...GACTAACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR-3UTR CAA 90 bp | CAACAGGGGCTCTCTTCACCATCTGACCTTCCAGTTCACTTGTCAATAAAAACGCAGGTCCTGTATTTATaGTCAGGAAGCTTTCTACAG | + |
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Preference number: 3 (lower is better) Translates to: QQGLSSPSDLPVHLSIKTQVLYL*SGSFLQ Trigger: CTGTAGAAAGCTTCCTGACAATAAATACAGGACCTG...CGTTTTTATTGACAAGTGAACTGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR-3UTR CAA 90 bp | TTGGTTTGTTCTTTTCAACACAAGTGCCATGGCTGTATCCTTGACCAAAGAATGCGCCAAAACCATAAATaGCCGACTTCCAGGTTCCAT | + |
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Preference number: 3 (lower is better) Translates to: LVCSFQHKCHGCILDQRMRQNHK*PTSRFH Trigger: ATGGAACCTGGAAGTCGGCAATTTATGGTTTTGGCG...CATTCTTTGGTCAAGGATACAGCCATGGCACTTGTGTTGAAAAGAACAAACCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR-3UTR CAA 90 bp | TCACTTAGCAAACGCTCACATGCTACGCAGAGGAACTTAGAGGAGGGTGAGATTGTGTTGGACCTTGTTTaGAAAAATAGCCAAAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: SLSKRSHATQRNLEEGEIVLDLV*KNSQRK Trigger: TTTCCTTTGGCTATTTTTCAAAACAAGGTCCAACAC...AATCTCACCCTCCTCTAAGTTCCTCTGCGTAGCATGTGAGCGTTTGCTAAGTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR TCA 72 bp | AAGGAATGGAATACGAGTTCAGCTCTCTACAATAGCTaGCTGGCCACCTTCTTTTCAACTTTGTACCAACAA | + |
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Preference number: 3 (lower is better) Translates to: KEWNTSSALYNS*LATFFSTLYQQ Trigger: TTGTTGGTACAAAGTTGAAAAGAAGGTGGCCAGTCAGCTATTGTAGAGAGCTGAACTCGTATTCCATTCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR CCA 72 bp | AATGGAATACGAGTTCAGCTCTCTACAATAGCTGACTaGCCACCTTCTTTTCAACTTTGTACCAACAATTGG | + |
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Preference number: 3 (lower is better) Translates to: NGIRVQLSTIAD*PPSFQLCTNNW Trigger: CCAATTGTTGGTACAAAGTTGAAAAGAAGGTGGCCAGTCAGCTATTGTAGAGAGCTGAACTCGTATTCCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| 3UTR TCA 72 bp | TTGTTCTTTTCAACACAAGTGCCATGGCTGTATCCTTaGCCAAAGAATGTCATTGTAAATGATGTCTCATCC | + |
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Preference number: 3 (lower is better) Translates to: LFFSTQVPWLYP*PKNVIVNDVSS Trigger: GGATGAGACATCATTTACAATGACATTCTTTGGTCAAGGATACAGCCATGGCACTTGTGTTGAAAAGAACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| CDS-3UTR CCA 90 bp | GTCACTAAGGAATGCTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTGACGCTGCAGCTTCTCCTTaGAGCGACCCGCCACGGCCC | + |
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Preference number: 4 (lower is better) Translates to: VTKECCQQHQQGLSSPSDAAASP*SDPPRP Trigger: GGGCCGTGGCGGGTCGCTCCAAGGAGAAGCTGCAGC...GTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAGCATTCCTTAGTGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| CDS-3UTR GCA 90 bp | AAGGAATGCTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTGACCTTCCATGCTCCGAGGCTATCTaGTCCCGGGCCACCTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: KECCQQHQQGLSSPSDLPCSEAI*SRATSS Trigger: GGAGGAGGTGGCCCGGGAGCAGATAGCCTCGGAGCA...TGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAGCATTCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| CDS-3UTR CCA 90 bp | GTTCTGGAGAAAGCTGCTCCAGGTGTAAAGACACCGCCCCCTTTTGGAAGGTCATCCTCCGTCACGAACTaGCCGGTGAAGCCAGAGGCG | + |
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Preference number: 4 (lower is better) Translates to: VLEKAAPGVKTPPPFGRSSSVTN*PVKPEA Trigger: CGCCTCTGGCTTCACCGGCCAGTTCGTGACGGAGGA...TGACCTTCCAAAAGGGGGCGGTGTCTTTACACCTGGAGCAGCTTTCTCCAGAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| CDS-3UTR TCA 90 bp | AGGGTGAGATTCCACAACACCAGGGCAGGGAAGGCAGACTCTACTGCCACAGCCACGGTCCTACGCAGTTaGGGACAAGCTTTGCCTGTT | + |
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Preference number: 4 (lower is better) Translates to: RVRFHNTRAGKADSTATATVLRS*GQALPV Trigger: AACAGGCAAAGCTTGTCCTCAACTGCGTAGGACCGT...GGCTGTGGCAGTAGAGTCTGCCTTCCCTGCCCTGGTGTTGTGGAATCTCACCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| CDS-3UTR GCA 90 bp | AGGGTGAGATTCCACAACACCAGGGCAGGGAAGGCAGACTCTACTGCCACAGCCTTCTCCAGCACTTGCTaGAGCTTCTCCTTGGAGCGA | + |
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Preference number: 4 (lower is better) Translates to: RVRFHNTRAGKADSTATAFSSTC*SFSLER Trigger: TCGCTCCAAGGAGAAGCTGCAGCAAGTGCTGGAGAA...GGCTGTGGCAGTAGAGTCTGCCTTCCCTGCCCTGGTGTTGTGGAATCTCACCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| CDS-3UTR CCA 90 bp | CCGACTTCCAGGTTCCATCATGAATACACAACCCCTCAGGTCCTGTATTTATTGGCTGCAGCTTCTCCTTaGAGCGACCCGCCACGGCCC | + |
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Preference number: 4 (lower is better) Translates to: PTSRFHHEYTTPQVLYLLAAASP*SDPPRP Trigger: GGGCCGTGGCGGGTCGCTCCAAGGAGAAGCTGCAGC...CAATAAATACAGGACCTGAGGGGTTGTGTATTCATGATGGAACCTGGAAGTCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| CDS-3UTR GCA 90 bp | GCTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTGACCTTCCAGTTCACTGCCTTCTCCAGCACTTaGTGCAGCTTCTCCTTGGAG | + |
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Preference number: 4 (lower is better) Translates to: AVSNTNRGSLHHLTFQFTAFSST*CSFSLE Trigger: CTCCAAGGAGAAGCTGCAGCAAGTGCTGGAGAAGGC...AGTGAACTGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| CDS-3UTR CCA 90 bp | ACAGTTTCACTTAGCAAACGCTCACATGCTACGCAGAGGAACTTAGAGGAGGGTTCCTCCGTCACGAACTaGCCGGTGAAGCCAGAGGCG | + |
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Preference number: 4 (lower is better) Translates to: TVSLSKRSHATQRNLEEGSSVTN*PVKPEA Trigger: CGCCTCTGGCTTCACCGGCCAGTTCGTGACGGAGGA...ACCCTCCTCTAAGTTCCTCTGCGTAGCATGTGAGCGTTTGCTAAGTGAAACTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| CDS-3UTR TCA 90 bp | GAGATTCCACAACACCAGGGCAGGGAAGGCAGACTCTACTGCCACAGCCTAACAAAAGTCATGGCAGCCTaGACCATGGCTATGGGAGTA | + |
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Preference number: 4 (lower is better) Translates to: EIPQHQGREGRLYCHSLTKVMAA*TMAMGV Trigger: TACTCCCATAGCCATGGTTCAGGCTGCCATGACTTT...TGTTAGGCTGTGGCAGTAGAGTCTGCCTTCCCTGCCCTGGTGTTGTGGAATCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
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| CDS-3UTR CCA 90 bp | GAGATTCCACAACACCAGGGCAGGGAAGGCAGACTCTACTGCCACAGCCTAACACTAGATCTGCTGGGATaGAGTCAAAGCCACTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: EIPQHQGREGRLYCHSLTLDLLG*SQSHCF Trigger: GAAGCAGTGGCTTTGACTCCATCCCAGCAGATCTAG...TGTTAGGCTGTGGCAGTAGAGTCTGCCTTCCCTGCCCTGGTGTTGTGGAATCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
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| CDS-3UTR GCA 90 bp | GTCACTAAGGAATGCTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTGACTTCTCCAGCACTTGCTaGAGCTTCTCCTTGGAGCGA | + |
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Preference number: 4 (lower is better) Translates to: VTKECCQQHQQGLSSPSDFSSTC*SFSLER Trigger: TCGCTCCAAGGAGAAGCTGCAGCAAGTGCTGGAGAA...GTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAGCATTCCTTAGTGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| CDS-3UTR GCA 90 bp | AGGGTGAGATTCCACAACACCAGGGCAGGGAAGGCAGACTCTACTGCCACAGCCTCTTTTCAACACAAGTaGCATGGCTGTATCCTTGAC | + |
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Preference number: 4 (lower is better) Translates to: RVRFHNTRAGKADSTATASFQHK*HGCILD Trigger: GTCAAGGATACAGCCATGGCACTTGTGTTGAAAAGA...GGCTGTGGCAGTAGAGTCTGCCTTCCCTGCCCTGGTGTTGTGGAATCTCACCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
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| CDS-3UTR TCA 90 bp | GATTCCACAACACCAGGGCAGGGAAGGCAGACTCTACTGCCACAGCCTAACAGCAGCCATTTCATCAAGTaGGGCTGGATTACTGATATC | + |
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Preference number: 4 (lower is better) Translates to: DSTTPGQGRQTLLPQPNSSHFIK*GWITDI Trigger: GATATCAGTAATCCAGCCTCACTTGATGAAATGGCT...GCTGTTAGGCTGTGGCAGTAGAGTCTGCCTTCCCTGCCCTGGTGTTGTGGAATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| CDS-3UTR GCA 90 bp | TTGGTTTGTTCTTTTCAACACAAGTGCCATGGCTGTATCCTTGACCAAAGAATGTGCTCCGAGGCTATCTaGTCCCGGGCCACCTCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: LVCSFQHKCHGCILDQRMCSEAI*SRATSS Trigger: GGAGGAGGTGGCCCGGGAGCAGATAGCCTCGGAGCA...CATTCTTTGGTCAAGGATACAGCCATGGCACTTGTGTTGAAAAGAACAAACCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
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| CDS-3UTR TCA 90 bp | AGAAAGCAGACTGAAGTAGAAGTACAGTTTCACTTAGCAAACGCTCACATGCTATCACGAACTGGCCGGTaGAGCCAGAGGCGCCGAACA | + |
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Preference number: 4 (lower is better) Translates to: RKQTEVEVQFHLANAHMLSRTGR*SQRRRT Trigger: TGTTCGGCGCCTCTGGCTTCACCGGCCAGTTCGTGA...TAGCATGTGAGCGTTTGCTAAGTGAAACTGTACTTCTACTTCAGTCTGCTTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| CDS-3UTR TCA 90 bp | GCTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTGACCTTCCAGTTCACTATTAGTTCCAGAAACTaGGGTTCCCCACAGATGTCA | + |
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Preference number: 4 (lower is better) Translates to: AVSNTNRGSLHHLTFQFTISSRN*GSPQMS Trigger: TGACATCTGTGGGGAACCTCAGTTTCTGGAACTAAT...AGTGAACTGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
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| CDS-3UTR TCA 90 bp | AAGGAATGCTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTGACCTTCCAAGCCACTGCTTCCAATaGTATAAACCCCCTTCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: KECCQQHQQGLSSPSDLPSHCFQ*YKPPSL Trigger: CAGAGAAGGGGGTTTATATCATTGGAAGCAGTGGCT...TGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAGCATTCCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| CDS-3UTR CCA 90 bp | AAGGAATGCTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTGACCTTCCACACTCAGAAAAGTCATaGCAGCCTGAACCATGGCTA | + |
|
Preference number: 4 (lower is better) Translates to: KECCQQHQQGLSSPSDLPHSEKS*QPEPWL Trigger: TAGCCATGGTTCAGGCTGCCATGACTTTTCTGAGTG...TGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAGCATTCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| 3UTR CAA 72 bp | GGGAGTAGCCACGTAGCCAGCCTCTGGTCCCTTCACTaGAGTGCAGATTCGGATATTTGGTTTGTTCTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: GSSHVASLWSLH*SADSDIWFVLF Trigger: GAAAAGAACAAACCAAATATCCGAATCTGCACTCAAGTGAAGGGACCAGAGGCTGGCTACGTGGCTACTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
||
| CDS-3UTR CCA 90 bp | GTCACTAAGGAATGCTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTGACCGTTCATCTGGTTCCTaGTGTATAGCACTCCTAGAT | + |
|
Preference number: 4 (lower is better) Translates to: VTKECCQQHQQGLSSPSDRSSGS*CIALLD Trigger: ATCTAGGAGTGCTATACACCAGGAACCAGATGAACG...GTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAGCATTCCTTAGTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| CDS-3UTR TCA 90 bp | GAAGAATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTTCACGAACTGGCCGGTaGAGCCAGAGGCGCCGAACA | + |
|
Preference number: 4 (lower is better) Translates to: EEFHISNTDAVCAFYDSVSRTGR*SQRRRT Trigger: TGTTCGGCGCCTCTGGCTTCACCGGCCAGTTCGTGA...AACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATTCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
||
| CDS-3UTR TCA 90 bp | CAACAGGGGCTCTCTTCACCATCTGACCTTCCAGTTCACTTGTCAATAAAAACGTTCCAGGTTCCATCATaGATACACAACCCCTCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: QQGLSSPSDLPVHLSIKTFQVPS*IHNPSG Trigger: ACCTGAGGGGTTGTGTATTCATGATGGAACCTGGAA...CGTTTTTATTGACAAGTGAACTGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| CDS-3UTR GCA 90 bp | GTTTCACTTAGCAAACGCTCACATGCTACGCAGAGGAACTTAGAGGAGGGTGAGGTCCCTTCACTTGAGTaGAGATTCGGATATTTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: VSLSKRSHATQRNLEEGEVPSLE*RFGYLV Trigger: AACCAAATATCCGAATCTGCACTCAAGTGAAGGGAC...CTCACCCTCCTCTAAGTTCCTCTGCGTAGCATGTGAGCGTTTGCTAAGTGAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| CDS-3UTR GCA 90 bp | ACAGTTTCACTTAGCAAACGCTCACATGCTACGCAGAGGAACTTAGAGGAGGGTGTTGAGGACAAGCTTTaGCTGTTTAGCCATTTCATC | + |
|
Preference number: 4 (lower is better) Translates to: TVSLSKRSHATQRNLEEGVEDKL*LFSHFI Trigger: GATGAAATGGCTAAACAGGCAAAGCTTGTCCTCAAC...ACCCTCCTCTAAGTTCCTCTGCGTAGCATGTGAGCGTTTGCTAAGTGAAACTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
||
| CDS-3UTR GCA 90 bp | GTTTCACTTAGCAAACGCTCACATGCTACGCAGAGGAACTTAGAGGAGGGTGAGATAAACCCCCTTCTCTaGAGCTTTCTCATGATACTT | + |
|
Preference number: 4 (lower is better) Translates to: VSLSKRSHATQRNLEEGEINPLL*SFLMIL Trigger: AAGTATCATGAGAAAGCTGCAGAGAAGGGGGTTTAT...CTCACCCTCCTCTAAGTTCCTCTGCGTAGCATGTGAGCGTTTGCTAAGTGAAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| 3UTR CAA 72 bp | CCTCTGGTCCCTTCACTTGAGTGCAGATTCGGATATTaGGTTTGTTCTTTTCAACACAAGTGCCATGGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: PLVPSLECRFGY*VCSFQHKCHGC Trigger: ACAGCCATGGCACTTGTGTTGAAAAGAACAAACCAAATATCCGAATCTGCACTCAAGTGAAGGGACCAGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
||
| CDS-3UTR GCA 90 bp | CAACAGGGGCTCTCTTCACCATCTGACCTTCCAGTTCACTTGTCAATAAAAACGGTTGAGGACAAGCTTTaGCTGTTTAGCCATTTCATC | + |
|
Preference number: 4 (lower is better) Translates to: QQGLSSPSDLPVHLSIKTVEDKL*LFSHFI Trigger: GATGAAATGGCTAAACAGGCAAAGCTTGTCCTCAAC...CGTTTTTATTGACAAGTGAACTGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
||
| CDS-3UTR CCA 90 bp | ACAGTTTCACTTAGCAAACGCTCACATGCTACGCAGAGGAACTTAGAGGAGGGTTCTACAATAGCTGACTaGCCACCTTCTTTTCAACTT | + |
|
Preference number: 4 (lower is better) Translates to: TVSLSKRSHATQRNLEEGSTIAD*PPSFQL Trigger: AAGTTGAAAAGAAGGTGGCCAGTCAGCTATTGTAGA...ACCCTCCTCTAAGTTCCTCTGCGTAGCATGTGAGCGTTTGCTAAGTGAAACTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| CDS-3UTR CCA 90 bp | AAGGAATGCTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTGACCTTCCAAAAGGAAAAGAGCCATaGGAATTTTATGAGAAGTTG | + |
|
Preference number: 4 (lower is better) Translates to: KECCQQHQQGLSSPSDLPKGKEP*EFYEKL Trigger: CAACTTCTCATAAAATTCCCATGGCTCTTTTCCTTT...TGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAGCATTCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| CDS-3UTR CCA 90 bp | AAGGAATGCTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTGACCTTCCAGCAGATTCGGATATTTaGTTTGTTCTTTTCAACACA | + |
|
Preference number: 4 (lower is better) Translates to: KECCQQHQQGLSSPSDLPADSDI*FVLFNT Trigger: TGTGTTGAAAAGAACAAACCAAATATCCGAATCTGC...TGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAGCATTCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| CDS-3UTR TCA 90 bp | GAAGAATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTAAAGTCATGGCAGCCTaGACCATGGCTATGGGAGTA | + |
|
Preference number: 4 (lower is better) Translates to: EEFHISNTDAVCAFYDSVKVMAA*TMAMGV Trigger: TACTCCCATAGCCATGGTTCAGGCTGCCATGACTTT...AACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATTCTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000144480.8 |
||
| CDS-3UTR CCA 90 bp | AATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTAGTCCACTCAGAAAAGTCATaGCAGCCTGAACCATGGCTA | + |
|
Preference number: 4 (lower is better) Translates to: NFTYQIQTRFVHFMIRLVHSEKS*QPEPWL Trigger: TAGCCATGGTTCAGGCTGCCATGACTTTTCTGAGTG...GACTAACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000144480.8 |
||
| 3UTR CAA 72 bp | GTTTTCTTAAACTACCCTTATCGCCAAAACCATAAATaGCCGACTTCCAGGTTCCATCATGAATACACAACC | + |
|
Preference number: 4 (lower is better) Translates to: VFLNYPYRQNHK*PTSRFHHEYTT Trigger: GGTTGTGTATTCATGATGGAACCTGGAAGTCGGCAATTTATGGTTTTGGCGATAAGGGTAGTTTAAGAAAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
||
| CDS-3UTR GCA 90 bp | AATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTAGTCGCCAAAACCATAAATTaGCGACTTCCAGGTTCCATC | + |
|
Preference number: 4 (lower is better) Translates to: NFTYQIQTRFVHFMIRLVAKTIN*RLPGSI Trigger: GATGGAACCTGGAAGTCGGCAATTTATGGTTTTGGC...GACTAACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| 3UTR CAA 72 bp | TCGGAGCTGCTAATGACACTAAATTCAATGCCATGTTaGTTGAGTCTGTCAATCAACTTTGTTCTGGAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: SELLMTLNSMPC*LSLSINFVLEK Trigger: TTTCTCCAGAACAAAGTTGATTGACAGACTCAACAAACATGGCATTGAATTTAGTGTCATTAGCAGCTCCGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
||
| CDS-3UTR TCA 90 bp | GAAGAATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTAGCCATTTCATCAAGTaGGGCTGGATTACTGATATC | + |
|
Preference number: 4 (lower is better) Translates to: EEFHISNTDAVCAFYDSVSHFIK*GWITDI Trigger: GATATCAGTAATCCAGCCTCACTTGATGAAATGGCT...AACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATTCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
||
| CDS-3UTR TCA 90 bp | AATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTAGTCGCCATGGGAATTTTATaGGAAGTTGTCTTCCAATGC | + |
|
Preference number: 4 (lower is better) Translates to: NFTYQIQTRFVHFMIRLVAMGIL*EVVFQC Trigger: GCATTGGAAGACAACTTCTCATAAAATTCCCATGGC...GACTAACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| CDS-3UTR TCA 90 bp | AATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTAGTCCCATGGCTGTATCCTTaGCCAAAGAATGTCATTGTA | + |
|
Preference number: 4 (lower is better) Translates to: NFTYQIQTRFVHFMIRLVPWLYP*PKNVIV Trigger: TACAATGACATTCTTTGGTCAAGGATACAGCCATGG...GACTAACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000144480.8 |
||
| CDS-3UTR GCA 90 bp | GAAGAATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTTCTTTTCAACACAAGTaGCATGGCTGTATCCTTGAC | + |
|
Preference number: 4 (lower is better) Translates to: EEFHISNTDAVCAFYDSVSFQHK*HGCILD Trigger: GTCAAGGATACAGCCATGGCACTTGTGTTGAAAAGA...AACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATTCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000144480.8 |
||
| CDS-3UTR GCA 90 bp | AATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTAGTCGTCCCTTCACTTGAGTaGAGATTCGGATATTTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: NFTYQIQTRFVHFMIRLVVPSLE*RFGYLV Trigger: AACCAAATATCCGAATCTGCACTCAAGTGAAGGGAC...GACTAACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000144480.8 |
||
| CDS-3UTR TCA 90 bp | GAAGAATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTTCTCATCCATTTTTATaGGAAGTTGTCTTCCAATGC | + |
|
Preference number: 4 (lower is better) Translates to: EEFHISNTDAVCAFYDSVSHPFL*EVVFQC Trigger: GCATTGGAAGACAACTTCTCATAAAAATGGATGAGA...AACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATTCTTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144480.8 |
||
| CDS-3UTR CCA 90 bp | GAAGAATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTGCAGATTCGGATATTTaGTTTGTTCTTTTCAACACA | + |
|
Preference number: 4 (lower is better) Translates to: EEFHISNTDAVCAFYDSVADSDI*FVLFNT Trigger: TGTGTTGAAAAGAACAAACCAAATATCCGAATCTGC...AACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATTCTTC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000144480.8 |
||
| CDS GCA 90 bp | CCCGCCACGGCCCAGGGCAGGCGGGAGCTCTGCTCCGAGGCTATCTaGTCCCGGGCCACCTCCTCCGTCACGAACTGGCCGGTGAAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: PATAQGRRELCSEAI*SRATSSVTNWPVKP Trigger: TGGCTTCACCGGCCAGTTCGTGACGGAGGAGGTGGCCCGGGAGCAGATAGCCTCGGAGCAGAGCTCCCGCCTGCCCTGGGCCGTGGCGGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
||
| CDS GCA 90 bp | TTCTCCTTGGAGCGACCCGCCACGGCCCAGGGCAGGCGGGAGCTCTaGTCCGAGGCTATCTGCTCCCGGGCCACCTCCTCCGTCACGAAC | + |
|
Preference number: 5 (lower is better) Translates to: FSLERPATAQGRREL*SEAICSRATSSVTN Trigger: GTTCGTGACGGAGGAGGTGGCCCGGGAGCAGATAGCCTCGGAGCAGAGCTCCCGCCTGCCCTGGGCCGTGGCGGGTCGCTCCAAGGAGAA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
||
| CDS CCA 90 bp | CCAGTTTCTGGGCAGCCTTCTCCAGCACTTGCTGCAGCTTCTCCTTaGAGCGACCCGCCACGGCCCAGGGCAGGCGGGAGCTCTGCTCCG | + |
|
Preference number: 5 (lower is better) Translates to: PVSGQPSPALAAASP*SDPPRPRAGGSSAP Trigger: CGGAGCAGAGCTCCCGCCTGCCCTGGGCCGTGGCGGGTCGCTCCAAGGAGAAGCTGCAGCAAGTGCTGGAGAAGGCTGCCCAGAAACTGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
||
| CDS CCA 90 bp | TGCTCCGAGGCTATCTGCTCCCGGGCCACCTCCTCCGTCACGAACTaGCCGGTGAAGCCAGAGGCGCCGAACACCACCAGGTGGAAAGGC | + |
|
Preference number: 5 (lower is better) Translates to: CSEAICSRATSSVTN*PVKPEAPNTTRWKG Trigger: GCCTTTCCACCTGGTGGTGTTCGGCGCCTCTGGCTTCACCGGCCAGTTCGTGACGGAGGAGGTGGCCCGGGAGCAGATAGCCTCGGAGCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
||
| CDS TCA 90 bp | AGGCTATCTGCTCCCGGGCCACCTCCTCCGTCACGAACTGGCCGGTaGAGCCAGAGGCGCCGAACACCACCAGGTGGAAAGGCCTCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: RLSAPGPPPPSRTGR*SQRRRTPPGGKASA Trigger: AGCAGAGGCCTTTCCACCTGGTGGTGTTCGGCGCCTCTGGCTTCACCGGCCAGTTCGTGACGGAGGAGGTGGCCCGGGAGCAGATAGCCT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
||
| CDS GCA 90 bp | AGTGATGGTCTTCCCAGTTTCTGGGCAGCCTTCTCCAGCACTTGCTaGAGCTTCTCCTTGGAGCGACCCGCCACGGCCCAGGGCAGGCGG | + |
|
Preference number: 5 (lower is better) Translates to: SDGLPSFWAAFSSTC*SFSLERPATAQGRR Trigger: CCGCCTGCCCTGGGCCGTGGCGGGTCGCTCCAAGGAGAAGCTGCAGCAAGTGCTGGAGAAGGCTGCCCAGAAACTGGGAAGACCATCACT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
||
| CDS GCA 90 bp | GATAGTGATGGTCTTCCCAGTTTCTGGGCAGCCTTCTCCAGCACTTaGTGCAGCTTCTCCTTGGAGCGACCCGCCACGGCCCAGGGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: DSDGLPSFWAAFSST*CSFSLERPATAQGR Trigger: CCTGCCCTGGGCCGTGGCGGGTCGCTCCAAGGAGAAGCTGCAGCAAGTGCTGGAGAAGGCTGCCCAGAAACTGGGAAGACCATCACTATC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
||
| CDS-3UTR CAA 90 bp | GCTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTGACCTTCCAGTTCACTTGCTGCAGCTTCTCCTaGGAGCGACCCGCCACGGCC | + |
|
Preference number: 5 (lower is better) Translates to: AVSNTNRGSLHHLTFQFTCCSFS*ERPATA Trigger: GGCCGTGGCGGGTCGCTCCAAGGAGAAGCTGCAGCA...AGTGAACTGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
||
| CDS-3UTR CAA 90 bp | TGTTCTGGAGAAAGCTGCTCCAGGTGTAAAGACACCGCCCCCTTTTGGAAGGTCTGCTGCAGCTTCTCCTaGGAGCGACCCGCCACGGCC | + |
|
Preference number: 5 (lower is better) Translates to: CSGESCSRCKDTAPFWKVCCSFS*ERPATA Trigger: GGCCGTGGCGGGTCGCTCCAAGGAGAAGCTGCAGCA...GACCTTCCAAAAGGGGGCGGTGTCTTTACACCTGGAGCAGCTTTCTCCAGAACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
||
| CDS-3UTR CAA 90 bp | GAGATTCCACAACACCAGGGCAGGGAAGGCAGACTCTACTGCCACAGCCTAACAAGACACCGCCCCCTTTaGGAAGGTCAGAGGCGTCAC | + |
|
Preference number: 5 (lower is better) Translates to: EIPQHQGREGRLYCHSLTRHRPL*EGQRRH Trigger: GTGACGCCTCTGACCTTCCAAAAGGGGGCGGTGTCT...TGTTAGGCTGTGGCAGTAGAGTCTGCCTTCCCTGCCCTGGTGTTGTGGAATCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| CDS-3UTR CAA 90 bp | GAGATTCCACAACACCAGGGCAGGGAAGGCAGACTCTACTGCCACAGCCTAACAAGCCTTCTCCAGCACTaGCTGCAGCTTCTCCTTGGA | + |
|
Preference number: 5 (lower is better) Translates to: EIPQHQGREGRLYCHSLTSLLQH*LQLLLG Trigger: TCCAAGGAGAAGCTGCAGCAAGTGCTGGAGAAGGCT...TGTTAGGCTGTGGCAGTAGAGTCTGCCTTCCCTGCCCTGGTGTTGTGGAATCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
||
| CDS-3UTR CAA 90 bp | GAGATTCCACAACACCAGGGCAGGGAAGGCAGACTCTACTGCCACAGCCTAACACAGGTCCTGTATTTATaGTCAGGAAGCTTTCTACAG | + |
|
Preference number: 5 (lower is better) Translates to: EIPQHQGREGRLYCHSLTQVLYL*SGSFLQ Trigger: CTGTAGAAAGCTTCCTGACAATAAATACAGGACCTG...TGTTAGGCTGTGGCAGTAGAGTCTGCCTTCCCTGCCCTGGTGTTGTGGAATCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| CDS-3UTR CAA 90 bp | CTGACTGGCCACCTTCTTTTCAACTTTGTACCAACAATTGGGACAGGTTTCAGAAGCCTTCTCCAGCACTaGCTGCAGCTTCTCCTTGGA | + |
|
Preference number: 5 (lower is better) Translates to: LTGHLLFNFVPTIGTGFRSLLQH*LQLLLG Trigger: TCCAAGGAGAAGCTGCAGCAAGTGCTGGAGAAGGCT...TCTGAAACCTGTCCCAATTGTTGGTACAAAGTTGAAAAGAAGGTGGCCAGTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134287.2 |
||
| CDS-3UTR CAA 90 bp | CAACAGGGGCTCTCTTCACCATCTGACCTTCCAGTTCACTTGTCAATAAAAACGTACGGTCCTACGCAGTaGAGGACAAGCTTTGCCTGT | + |
|
Preference number: 5 (lower is better) Translates to: QQGLSSPSDLPVHLSIKTYGPTQ*RTSFAC Trigger: ACAGGCAAAGCTTGTCCTCAACTGCGTAGGACCGTA...CGTTTTTATTGACAAGTGAACTGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
||
| CDS-3UTR CAA 90 bp | AAGGAATGCTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTGACCTTCCAGCCATGGCTGTATCCTaGACCAAAGAATGTCATTGT | + |
|
Preference number: 5 (lower is better) Translates to: KECCQQHQQGLSSPSDLPAMAVS*TKECHC Trigger: ACAATGACATTCTTTGGTCAAGGATACAGCCATGGC...TGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAGCATTCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| CDS TCA 90 bp | GCACTCCTAGATCTGCTGGGATGGAGTCAAAGCCACTGCTTCCAATaGTATAAACCCCCTTCTCTGCAGCTTTCTCATGATACTTCGCAT | + |
|
Preference number: 5 (lower is better) Translates to: ALLDLLGWSQSHCFQ*YKPPSLQLSHDTSH Trigger: ATGCGAAGTATCATGAGAAAGCTGCAGAGAAGGGGGTTTATATCATTGGAAGCAGTGGCTTTGACTCCATCCCAGCAGATCTAGGAGTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| CDS-3UTR CAA 90 bp | GCTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTGACCTTCCAGTTCACTGTGTTGGACCTTGTTTaGAAAAATAGCCAAAGGAAA | + |
|
Preference number: 5 (lower is better) Translates to: AVSNTNRGSLHHLTFQFTVLDLV*KNSQRK Trigger: TTTCCTTTGGCTATTTTTCAAAACAAGGTCCAACAC...AGTGAACTGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| CDS-3UTR CAA 90 bp | TCACTTAGCAAACGCTCACATGCTACGCAGAGGAACTTAGAGGAGGGTGAGATTGTCTGTCAATCAACTTaGTTCTGGAGAAAGCTGCTC | + |
|
Preference number: 5 (lower is better) Translates to: SLSKRSHATQRNLEEGEIVCQST*FWRKLL Trigger: GAGCAGCTTTCTCCAGAACAAAGTTGATTGACAGAC...AATCTCACCCTCCTCTAAGTTCCTCTGCGTAGCATGTGAGCGTTTGCTAAGTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
||
| CDS-3UTR CAA 90 bp | CGCTCACATGCTACGCAGAGGAACTTAGAGGAGGGTGAGATTCCACAACACCAGTCAATGCCATGTTTGTaGAGTCTGTCAATCAACTTT | + |
|
Preference number: 5 (lower is better) Translates to: RSHATQRNLEEGEIPQHQSMPCL*SLSINF Trigger: AAAGTTGATTGACAGACTCAACAAACATGGCATTGA...CTGGTGTTGTGGAATCTCACCCTCCTCTAAGTTCCTCTGCGTAGCATGTGAGCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
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| CDS-3UTR CAA 90 bp | ACAGTTTCACTTAGCAAACGCTCACATGCTACGCAGAGGAACTTAGAGGAGGGTACTTTGTACCAACAATaGGGACAGGTTTCAGACATG | + |
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Preference number: 5 (lower is better) Translates to: TVSLSKRSHATQRNLEEGTLYQQ*GQVSDM Trigger: CATGTCTGAAACCTGTCCCAATTGTTGGTACAAAGT...ACCCTCCTCTAAGTTCCTCTGCGTAGCATGTGAGCGTTTGCTAAGTGAAACTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
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| CDS-3UTR CAA 90 bp | GAAGAATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTAGACACCGCCCCCTTTaGGAAGGTCAGAGGCGTCAC | + |
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Preference number: 5 (lower is better) Translates to: EEFHISNTDAVCAFYDSVRHRPL*EGQRRH Trigger: GTGACGCCTCTGACCTTCCAAAAGGGGGCGGTGTCT...AACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATTCTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000144480.8 |
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| CDS-3UTR CAA 90 bp | AAGGAATGCTGTCAGCAACACCAACAGGGGCTCTCTTCACCATCTGACCTTCCAAATTCAATGCCATGTTaGTTGAGTCTGTCAATCAAC | + |
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Preference number: 5 (lower is better) Translates to: KECCQQHQQGLSSPSDLPNSMPC*LSLSIN Trigger: GTTGATTGACAGACTCAACAAACATGGCATTGAATT...TGGAAGGTCAGATGGTGAAGAGAGCCCCTGTTGGTGTTGCTGACAGCATTCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
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| CDS-3UTR CAA 90 bp | AGAAAGCAGACTGAAGTAGAAGTACAGTTTCACTTAGCAAACGCTCACATGCTACGCCAAAACCATAAATaGCCGACTTCCAGGTTCCAT | + |
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Preference number: 5 (lower is better) Translates to: RKQTEVEVQFHLANAHMLRQNHK*PTSRFH Trigger: ATGGAACCTGGAAGTCGGCAATTTATGGTTTTGGCG...TAGCATGTGAGCGTTTGCTAAGTGAAACTGTACTTCTACTTCAGTCTGCTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
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| CDS TCA 90 bp | TACGCAGTTGAGGACAAGCTTTGCCTGTTTAGCCATTTCATCAAGTaGGGCTGGATTACTGATATCACAGATTATGACTCCAACTTCAGA | + |
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Preference number: 5 (lower is better) Translates to: YAVEDKLCLFSHFIK*GWITDITDYDSNFR Trigger: TCTGAAGTTGGAGTCATAATCTGTGATATCAGTAATCCAGCCTCACTTGATGAAATGGCTAAACAGGCAAAGCTTGTCCTCAACTGCGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| CDS CCA 90 bp | TTACAAAATACCTGGTCCCTTCACTTGAGTGCAGATTCGGATATTTaGTTTGTTCTTTTCAACACAAGTGCCATGGCTGTATCCTTGACC | + |
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Preference number: 5 (lower is better) Translates to: LQNTWSLHLSADSDI*FVLFNTSAMAVSLT Trigger: GGTCAAGGATACAGCCATGGCACTTGTGTTGAAAAGAACAAACCAAATATCCGAATCTGCACTCAAGTGAAGGGACCAGGTATTTTGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143936.2 |
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| CDS-3UTR CAA 90 bp | AGAAAGCAGACTGAAGTAGAAGTACAGTTTCACTTAGCAAACGCTCACATGCTAACCTTCTTTTCAACTTaGTACCAACAATTGGGACAG | + |
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Preference number: 5 (lower is better) Translates to: RKQTEVEVQFHLANAHMLTFFST*YQQLGQ Trigger: CTGTCCCAATTGTTGGTACAAAGTTGAAAAGAAGGT...TAGCATGTGAGCGTTTGCTAAGTGAAACTGTACTTCTACTTCAGTCTGCTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
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| CDS-3UTR CAA 90 bp | GAAGAATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTGCCATGGCTGTATCCTaGACCAAAGAATGTCATTGT | + |
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Preference number: 5 (lower is better) Translates to: EEFHISNTDAVCAFYDSVAMAVS*TKECHC Trigger: ACAATGACATTCTTTGGTCAAGGATACAGCCATGGC...AACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATTCTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000144480.8 |
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| CDS-3UTR CAA 90 bp | AGAAAGCAGACTGAAGTAGAAGTACAGTTTCACTTAGCAAACGCTCACATGCTATGCAGATTCGGATATTaGGTTTGTTCTTTTCAACAC | + |
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Preference number: 5 (lower is better) Translates to: RKQTEVEVQFHLANAHMLCRFGY*VCSFQH Trigger: GTGTTGAAAAGAACAAACCAAATATCCGAATCTGCA...TAGCATGTGAGCGTTTGCTAAGTGAAACTGTACTTCTACTTCAGTCTGCTTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
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| CDS-3UTR CAA 90 bp | GAAGAATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTGTCTGTCAATCAACTTaGTTCTGGAGAAAGCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: EEFHISNTDAVCAFYDSVVCQST*FWRKLL Trigger: GAGCAGCTTTCTCCAGAACAAAGTTGATTGACAGAC...AACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATTCTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000144480.8 |
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| CDS-3UTR CAA 90 bp | AATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTAGTCTGCAGATTCGGATATTaGGTTTGTTCTTTTCAACAC | + |
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Preference number: 5 (lower is better) Translates to: NFTYQIQTRFVHFMIRLVCRFGY*VCSFQH Trigger: GTGTTGAAAAGAACAAACCAAATATCCGAATCTGCA...GACTAACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000144480.8 |
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| CDS-3UTR CAA 90 bp | AATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTAGTCTCAATGCCATGTTTGTaGAGTCTGTCAATCAACTTT | + |
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Preference number: 5 (lower is better) Translates to: NFTYQIQTRFVHFMIRLVSMPCL*SLSINF Trigger: AAAGTTGATTGACAGACTCAACAAACATGGCATTGA...GACTAACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000144480.8 |
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| CDS-3UTR CAA 90 bp | GAAGAATTTCACATATCAAATACAGACGCGGTTTGTGCATTTTATGATTCGGTTAATTCAATGCCATGTTaGTTGAGTCTGTCAATCAAC | + |
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Preference number: 5 (lower is better) Translates to: EEFHISNTDAVCAFYDSVNSMPC*LSLSIN Trigger: GTTGATTGACAGACTCAACAAACATGGCATTGAATT...AACCGAATCATAAAATGCACAAACCGCGTCTGTATTTGATATGTGAAATTCTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000144480.8 |
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| CDS GCA 72 bp | GAGCGACCCGCCACGGCCCAGGGCAGGCGGGAGCTCTaGTCCGAGGCTATCTGCTCCCGGGCCACCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: ERPATAQGRREL*SEAICSRATSS Trigger: GGAGGAGGTGGCCCGGGAGCAGATAGCCTCGGAGCAGAGCTCCCGCCTGCCCTGGGCCGTGGCGGGTCGCTC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| CDS CCA 72 bp | GCTATCTGCTCCCGGGCCACCTCCTCCGTCACGAACTaGCCGGTGAAGCCAGAGGCGCCGAACACCACCAGG | + |
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Preference number: 6 (lower is better) Translates to: AICSRATSSVTN*PVKPEAPNTTR Trigger: CCTGGTGGTGTTCGGCGCCTCTGGCTTCACCGGCCAGTTCGTGACGGAGGAGGTGGCCCGGGAGCAGATAGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| CDS GCA 72 bp | CTTCCCAGTTTCTGGGCAGCCTTCTCCAGCACTTGCTaGAGCTTCTCCTTGGAGCGACCCGCCACGGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: LPSFWAAFSSTC*SFSLERPATAQ Trigger: CTGGGCCGTGGCGGGTCGCTCCAAGGAGAAGCTGCAGCAAGTGCTGGAGAAGGCTGCCCAGAAACTGGGAAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| CDS GCA 72 bp | GGTCTTCCCAGTTTCTGGGCAGCCTTCTCCAGCACTTaGTGCAGCTTCTCCTTGGAGCGACCCGCCACGGCC | + |
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Preference number: 6 (lower is better) Translates to: GLPSFWAAFSST*CSFSLERPATA Trigger: GGCCGTGGCGGGTCGCTCCAAGGAGAAGCTGCAGCAAGTGCTGGAGAAGGCTGCCCAGAAACTGGGAAGACC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| CDS TCA 72 bp | GATCTGCTGGGATGGAGTCAAAGCCACTGCTTCCAATaGTATAAACCCCCTTCTCTGCAGCTTTCTCATGAT | + |
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Preference number: 6 (lower is better) Translates to: DLLGWSQSHCFQ*YKPPSLQLSHD Trigger: ATCATGAGAAAGCTGCAGAGAAGGGGGTTTATATCATTGGAAGCAGTGGCTTTGACTCCATCCCAGCAGATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
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| CDS CCA 72 bp | TTTCTACAGCAGTCAAAGTACCGTTCATCTGGTTCCTaGTGTATAGCACTCCTAGATCTGCTGGGATGGAGT | + |
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Preference number: 6 (lower is better) Translates to: FLQQSKYRSSGS*CIALLDLLGWS Trigger: ACTCCATCCCAGCAGATCTAGGAGTGCTATACACCAGGAACCAGATGAACGGTACTTTGACTGCTGTAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
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| CDS CAA 72 bp | TACCTGGTCCCTTCACTTGAGTGCAGATTCGGATATTaGGTTTGTTCTTTTCAACACAAGTGCCATGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: YLVPSLECRFGY*VCSFQHKCHGC Trigger: ACAGCCATGGCACTTGTGTTGAAAAGAACAAACCAAATATCCGAATCTGCACTCAAGTGAAGGGACCAGGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143936.2 |
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| CDS TCA 72 bp | GAGGACAAGCTTTGCCTGTTTAGCCATTTCATCAAGTaGGGCTGGATTACTGATATCACAGATTATGACTCC | + |
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Preference number: 6 (lower is better) Translates to: EDKLCLFSHFIK*GWITDITDYDS Trigger: GGAGTCATAATCTGTGATATCAGTAATCCAGCCTCACTTGATGAAATGGCTAAACAGGCAAAGCTTGTCCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040538.10 ENSMUST00000134287.2 |
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| CDS CAA 72 bp | CATCATGAATACACAACCCCTCAGGTCCTGTATTTATaGTCAGGAAGCTTTCTACAGCAGTCAAAGTACCGT | + |
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Preference number: 6 (lower is better) Translates to: HHEYTTPQVLYL*SGSFLQQSKYR Trigger: ACGGTACTTTGACTGCTGTAGAAAGCTTCCTGACAATAAATACAGGACCTGAGGGGTTGTGTATTCATGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040538.10 |
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| CDS TCA 72 bp | ATGGCTGTATCCTTGACCAAAGAATGTCATTGTAAATaGTGTCTCATCCATTTTTATGAGAAGTTGTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: MAVSLTKECHCK*CLIHFYEKLSS Trigger: GGAAGACAACTTCTCATAAAAATGGATGAGACATCATTTACAATGACATTCTTTGGTCAAGGATACAGCCAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000144480.8 |
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