Pregenerated sensors for SCARB2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029426Ensembl transcript IDs: ENSMUST00000031377.9
Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTTGACAGGCCAGGAGCCCATGAGGATGCAGGGTTCCCCCTGTCCTaGTCCAGGTCAGGGCAGCTCTCACATTCTCTCACCAAGCTCAGG | + |
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Preference number: 1 (lower is better) Translates to: LDRPGAHEDAGFPLS*SRSGQLSHSLTKLR Trigger: CCTGAGCTTGGTGAGAGAATGTGAGAGCTGCCCTGACCTGGACCAGGACAGGGGGAACCCTGCATCCTCATGGGCTCCTGGCCTGTCAAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR GCA 90 bp | AGAGCCTATGTGGAAATGCCTATCCCCTGCCCATCCCCCACCCTGTaGACTCCCAGTGCCCTGCCACTCTGTGTCATGAGAAGGATGATG | + |
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Preference number: 1 (lower is better) Translates to: RAYVEMPIPCPSPTL*TPSALPLCVMRRMM Trigger: CATCATCCTTCTCATGACACAGAGTGGCAGGGCACTGGGAGTGCACAGGGTGGGGGATGGGCAGGGGATAGGCATTTCCACATAGGCTCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR GCA 90 bp | ATGTCACCCTGCTCATTTCCCTCTGACCAGGAGGGGCTTCTCGCTTaGCAGTGCTATGTTTCCTTCTTGACAGGCCAGGAGCCCATGAGG | + |
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Preference number: 1 (lower is better) Translates to: MSPCSFPSDQEGLLA*QCYVSFLTGQEPMR Trigger: CCTCATGGGCTCCTGGCCTGTCAAGAAGGAAACATAGCACTGGCAAGCGAGAAGCCCCTCCTGGTCAGAGGGAAATGAGCAGGGTGACAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR GCA 90 bp | TTAGAGACACGATTTTATAAAGCAGAATTGCCAGCCATGTCACCCTaGTCATTTCCCTCTGACCAGGAGGGGCTTCTCGCTTGCCAGTGC | + |
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Preference number: 1 (lower is better) Translates to: LETRFYKAELPAMSP*SFPSDQEGLLACQC Trigger: GCACTGGCAAGCGAGAAGCCCCTCCTGGTCAGAGGGAAATGAGCAGGGTGACATGGCTGGCAATTCTGCTTTATAAAATCGTGTCTCTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR CCA 90 bp | AGCTGTCTCTCTAGAAGGGAAACATCAGCCAAGCATGGTGGCTTATaGATCCCAGCACTCATGACACAAGGCAGGCGATCTCTGAGTTCA | + |
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Preference number: 1 (lower is better) Translates to: SCLSRRETSAKHGGL*IPALMTQGRRSLSS Trigger: TGAACTCAGAGATCGCCTGCCTTGTGTCATGAGTGCTGGGATCCATAAGCCACCATGCTTGGCTGATGTTTCCCTTCTAGAGAGACAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR GCA 90 bp | GGAGGCAGAGGCTGTCAGATCTCTGTGAATTCGAGGCCAGTCTGGTCTATAGAGGAGGGGCTTCTCGCTTaGCAGTGCTATGTTTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: GGRGCQISVNSRPVWSIEEGLLA*QCYVSF Trigger: GAAGGAAACATAGCACTGGCAAGCGAGAAGCCCCTC...CTCTATAGACCAGACTGGCCTCGAATTCACAGAGATCTGACAGCCTCTGCCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR GCA 90 bp | ATGAAGAGCATTCTGGTCAGTCTTTTTAAAGCCAGGCAGGCACAAGCAATTTACGAAATGCCTATCCCCTaGCCATCCCCCACCCTGTGC | + |
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Preference number: 2 (lower is better) Translates to: MKSILVSLFKARQAQAIYEMPIP*PSPTLC Trigger: GCACAGGGTGGGGGATGGGCAGGGGATAGGCATTTC...GTAAATTGCTTGTGCCTGCCTGGCTTTAAAAAGACTGACCAGAATGCTCTTCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR CCA 90 bp | GCACTAATAAAGGATCAATCTGTTTTTGGTCTCCTTTTCTATGTGCGATCATGTGGGTTCCCCCTGTCCTaGTCCAGGTCAGGGCAGCTC | + |
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Preference number: 2 (lower is better) Translates to: ALIKDQSVFGLLFYVRSCGFPLS*SRSGQL Trigger: GAGCTGCCCTGACCTGGACCAGGACAGGGGGAACCC...ACATGATCGCACATAGAAAAGGAGACCAAAAACAGATTGATCCTTTATTAGTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR TCA 90 bp | TTCGTCATTTTACAAATAACCCCTCAATATTTGCAGACACTGTCATTCCGTGTCCTGCTCATTTCCCTCTaGCCAGGAGGGGCTTCTCGC | + |
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Preference number: 2 (lower is better) Translates to: FVILQITPQYLQTLSFRVLLISL*PGGASR Trigger: GCGAGAAGCCCCTCCTGGTCAGAGGGAAATGAGCAG...GACACGGAATGACAGTGTCTGCAAATATTGAGGGGTTATTTGTAAAATGACGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR CAA 90 bp | AGACACATGAACACAGTTTTAGAGACACGATTTTATAAAGCAGAATaGCCAGCCATGTCACCCTGCTCATTTCCCTCTGACCAGGAGGGG | + |
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Preference number: 2 (lower is better) Translates to: RHMNTVLETRFYKAE*PAMSPCSFPSDQEG Trigger: CCCCTCCTGGTCAGAGGGAAATGAGCAGGGTGACATGGCTGGCAATTCTGCTTTATAAAATCGTGTCTCTAAAACTGTGTTCATGTGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR GCA 90 bp | TTCGTCATTTTACAAATAACCCCTCAATATTTGCAGACACTGTCATTCCGTGTCCCAGCCATGTCACCCTaGTCATTTCCCTCTGACCAG | + |
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Preference number: 2 (lower is better) Translates to: FVILQITPQYLQTLSFRVPAMSP*SFPSDQ Trigger: CTGGTCAGAGGGAAATGAGCAGGGTGACATGGCTGG...GACACGGAATGACAGTGTCTGCAAATATTGAGGGGTTATTTGTAAAATGACGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR GCA 90 bp | ATGAAGAGCATTCTGGTCAGTCTTTTTAAAGCCAGGCAGGCACAAGCAATTTACACACAGGGAACAGCTTaGTATTTTCAGCCCCGCACT | + |
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Preference number: 2 (lower is better) Translates to: MKSILVSLFKARQAQAIYTQGTA*YFQPRT Trigger: AGTGCGGGGCTGAAAATAGCAAGCTGTTCCCTGTGT...GTAAATTGCTTGTGCCTGCCTGGCTTTAAAAAGACTGACCAGAATGCTCTTCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR CAA 90 bp | ATGAAATATCTGCCTTACCCTCACCAACATTCCCAGTGCAACCTCTaGCTTCACAAAAGCACAACTAAAAATCCTCAGGAGCTCAATGCT | + |
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Preference number: 2 (lower is better) Translates to: MKYLPYPHQHSQCNL*LHKSTTKNPQELNA Trigger: AGCATTGAGCTCCTGAGGATTTTTAGTTGTGCTTTTGTGAAGCAAGAGGTTGCACTGGGAATGTTGGTGAGGGTAAGGCAGATATTTCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR TCA 90 bp | TGTAATGTTTTACAGAAGGAAAGCAGCCCCATTTGCTTGGTACACTGTATGGAGTTCTGTGTAAGGAGGTaGACAGGGAACAACAACAGA | + |
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Preference number: 2 (lower is better) Translates to: CNVLQKESSPICLVHCMEFCVRR*TGNNNR Trigger: TCTGTTGTTGTTCCCTGTTCACCTCCTTACACAGAA...CTCCATACAGTGTACCAAGCAAATGGGGCTGCTTTCCTTCTGTAAAACATTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR TCA 90 bp | ATGAAGAGCATTCTGGTCAGTCTTTTTAAAGCCAGGCAGGCACAAGCAATTTACAGTGAGACCCTGTCATaGAGCATGAAGACTAAGATG | + |
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Preference number: 2 (lower is better) Translates to: MKSILVSLFKARQAQAIYSETLS*SMKTKM Trigger: CATCTTAGTCTTCATGCTTCATGACAGGGTCTCACT...GTAAATTGCTTGTGCCTGCCTGGCTTTAAAAAGACTGACCAGAATGCTCTTCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR CAA 90 bp | GATGGACTTCCATCATTCGTCATTTTACAAATAACCCCTCAATATTaGCAGACACTGTCATTCCGTGTCACTGTCCTATGTGGCAGAGAA | + |
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Preference number: 2 (lower is better) Translates to: DGLPSFVILQITPQY*QTLSFRVTVLCGRE Trigger: TTCTCTGCCACATAGGACAGTGACACGGAATGACAGTGTCTGCAAATATTGAGGGGTTATTTGTAAAATGACGAATGATGGAAGTCCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR TCA 90 bp | ATGAAGAGCATTCTGGTCAGTCTTTTTAAAGCCAGGCAGGCACAAGCAATTTACACACCCAGACATCTCTaGCTAAAATTGACAGTTAGC | + |
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Preference number: 2 (lower is better) Translates to: MKSILVSLFKARQAQAIYTPRHL*LKLTVS Trigger: GCTAACTGTCAATTTTAGTCAGAGATGTCTGGGTGT...GTAAATTGCTTGTGCCTGCCTGGCTTTAAAAAGACTGACCAGAATGCTCTTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR GCA 90 bp | ATGAAGAGCATTCTGGTCAGTCTTTTTAAAGCCAGGCAGGCACAAGCAATTTACTTTATAAAGCAGAATTaGCAGCCATGTCACCCTGCT | + |
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Preference number: 2 (lower is better) Translates to: MKSILVSLFKARQAQAIYFIKQN*QPCHPA Trigger: AGCAGGGTGACATGGCTGGCAATTCTGCTTTATAAA...GTAAATTGCTTGTGCCTGCCTGGCTTTAAAAAGACTGACCAGAATGCTCTTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR GCA 90 bp | GCACTAATAAAGGATCAATCTGTTTTTGGTCTCCTTTTCTATGTGCGATCATGTCTACACGGAAGCCATTaGCTTCCAAAGAGAAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: ALIKDQSVFGLLFYVRSCLHGSH*LPKRSS Trigger: GCTGCTTCTCTTTGGAAGGCAATGGCTTCCGTGTAG...ACATGATCGCACATAGAAAAGGAGACCAAAAACAGATTGATCCTTTATTAGTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR CCA 90 bp | GGATCAATCTGTTTTTGGTCTCCTTTTCTATGTGCGATCATGTCTATCTACTATTGTCACTGTCCTATGTaGCAGAGAAGCCTGAAGGGA | + |
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Preference number: 2 (lower is better) Translates to: GSICFWSPFLCAIMSIYYCHCPM*QRSLKG Trigger: TCCCTTCAGGCTTCTCTGCCACATAGGACAGTGACA...ATAGTAGATAGACATGATCGCACATAGAAAAGGAGACCAAAAACAGATTGATCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR CCA 90 bp | GGATCAATCTGTTTTTGGTCTCCTTTTCTATGTGCGATCATGTCTATCTACTATATCAGCCAAGCATGGTaGCTTATGGATCCCAGCACT | + |
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Preference number: 2 (lower is better) Translates to: GSICFWSPFLCAIMSIYYISQAW*LMDPST Trigger: AGTGCTGGGATCCATAAGCCACCATGCTTGGCTGAT...ATAGTAGATAGACATGATCGCACATAGAAAAGGAGACCAAAAACAGATTGATCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR TCA 90 bp | ATGAAGAGCATTCTGGTCAGTCTTTTTAAAGCCAGGCAGGCACAAGCAATTTACATCCCTTCCCCTACTTaGTTCCTAACACACTATAAA | + |
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Preference number: 2 (lower is better) Translates to: MKSILVSLFKARQAQAIYIPSPT*FLTHYK Trigger: TTTATAGTGTGTTAGGAATCAAGTAGGGGAAGGGAT...GTAAATTGCTTGTGCCTGCCTGGCTTTAAAAAGACTGACCAGAATGCTCTTCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR TCA 90 bp | GGATCAATCTGTTTTTGGTCTCCTTTTCTATGTGCGATCATGTCTATCTACTATCAAAATAGTGGACTCTaGGAATCATGGACTCTGCCC | + |
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Preference number: 2 (lower is better) Translates to: GSICFWSPFLCAIMSIYYQNSGL*ESWTLP Trigger: GGGCAGAGTCCATGATTCTCAGAGTCCACTATTTTG...ATAGTAGATAGACATGATCGCACATAGAAAAGGAGACCAAAAACAGATTGATCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR CCA 90 bp | GCACTAATAAAGGATCAATCTGTTTTTGGTCTCCTTTTCTATGTGCGATCATGTGCTTGGTACACTGTATaGAGCTGTGATTCTACCCTG | + |
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Preference number: 2 (lower is better) Translates to: ALIKDQSVFGLLFYVRSCAWYTV*SCDSTL Trigger: CAGGGTAGAATCACAGCTCCATACAGTGTACCAAGC...ACATGATCGCACATAGAAAAGGAGACCAAAAACAGATTGATCCTTTATTAGTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR CCA 90 bp | GCACTAATAAAGGATCAATCTGTTTTTGGTCTCCTTTTCTATGTGCGATCATGTAATTCGAGGCCAGTCTaGTCTATAGAGCGAGTTCCA | + |
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Preference number: 2 (lower is better) Translates to: ALIKDQSVFGLLFYVRSCNSRPV*SIERVP Trigger: TGGAACTCGCTCTATAGACCAGACTGGCCTCGAATT...ACATGATCGCACATAGAAAAGGAGACCAAAAACAGATTGATCCTTTATTAGTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR CCA 90 bp | GGATCAATCTGTTTTTGGTCTCCTTTTCTATGTGCGATCATGTCTATCTACTATAAGCATGGTGGCTTATaGATCCCAGCACTCATGACA | + |
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Preference number: 2 (lower is better) Translates to: GSICFWSPFLCAIMSIYYKHGGL*IPALMT Trigger: TGTCATGAGTGCTGGGATCCATAAGCCACCATGCTT...ATAGTAGATAGACATGATCGCACATAGAAAAGGAGACCAAAAACAGATTGATCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR GCA 90 bp | GCACTAATAAAGGATCAATCTGTTTTTGGTCTCCTTTTCTATGTGCGATCATGTCACCAACATTCCCAGTaGAACCTCTTGCTTCACAAA | + |
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Preference number: 2 (lower is better) Translates to: ALIKDQSVFGLLFYVRSCHQHSQ*NLLLHK Trigger: TTTGTGAAGCAAGAGGTTGCACTGGGAATGTTGGTG...ACATGATCGCACATAGAAAAGGAGACCAAAAACAGATTGATCCTTTATTAGTGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR GCA 90 bp | ATGAAGAGCATTCTGGTCAGTCTTTTTAAAGCCAGGCAGGCACAAGCAATTTACGGAAACATTGTGTATTaGTTTGTGTCAATAGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: MKSILVSLFKARQAQAIYGNIVY*FVSIEE Trigger: TTCCTCTATTGACACAAAGCAATACACAATGTTTCC...GTAAATTGCTTGTGCCTGCCTGGCTTTAAAAAGACTGACCAGAATGCTCTTCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR CCA 72 bp | CCAGGAGCCCATGAGGATGCAGGGTTCCCCCTGTCCTaGTCCAGGTCAGGGCAGCTCTCACATTCTCTCACC | + |
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Preference number: 3 (lower is better) Translates to: PGAHEDAGFPLS*SRSGQLSHSLT Trigger: GGTGAGAGAATGTGAGAGCTGCCCTGACCTGGACCAGGACAGGGGGAACCCTGCATCCTCATGGGCTCCTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR GCA 72 bp | TTTCCCTCTGACCAGGAGGGGCTTCTCGCTTGCCAGTaGTATGTTTCCTTCTTGACAGGCCAGGAGCCCATG | + |
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Preference number: 3 (lower is better) Translates to: FPSDQEGLLACQ*YVSFLTGQEPM Trigger: CATGGGCTCCTGGCCTGTCAAGAAGGAAACATAGCACTGGCAAGCGAGAAGCCCCTCCTGGTCAGAGGGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR GCA 72 bp | AAATCTACTGGGCAGAGCCTAGAGCCTATGTGGAAATaGCTATCCCCTGCCCATCCCCCACCCTGTGCACTC | + |
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Preference number: 3 (lower is better) Translates to: KSTGQSLEPMWK*LSPAHPPPCAL Trigger: GAGTGCACAGGGTGGGGGATGGGCAGGGGATAGGCATTTCCACATAGGCTCTAGGCTCTGCCCAGTAGATTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR CCA 72 bp | AGAGCACTTAGTGACAGGGAGCCACGAAGCACCGGCTaGGTCCAGAAGAAATGCCTCTCTAACCTGTGCACA | + |
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Preference number: 3 (lower is better) Translates to: RALSDREPRSTG*VQKKCLSNLCT Trigger: TGTGCACAGGTTAGAGAGGCATTTCTTCTGGACCCAGCCGGTGCTTCGTGGCTCCCTGTCACTAAGTGCTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR CCA 72 bp | ACTCTGTGTCATGAGAAGGATGATGGCCACAGCCTTTaGGGCCCGTCCAGGAGAATGCCCTCAGAAGAACGA | + |
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Preference number: 3 (lower is better) Translates to: TLCHEKDDGHSL*GPSRRMPSEER Trigger: TCGTTCTTCTGAGGGCATTCTCCTGGACGGGCCCCAAAGGCTGTGGCCATCATCCTTCTCATGACACAGAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR CCA 72 bp | TACACGGAAGCCATTGCCTTCCAAAGAGAAGCAGCCTaGCTGCTCGACTCCTTATCTGAAGTGCCTCTGACT | + |
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Preference number: 3 (lower is better) Translates to: YTEAIAFQREAA*LLDSLSEVPLT Trigger: AGTCAGAGGCACTTCAGATAAGGAGTCGAGCAGCCAGGCTGCTTCTCTTTGGAAGGCAATGGCTTCCGTGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR CCA 72 bp | TCTAGAAGGGAAACATCAGCCAAGCATGGTGGCTTATaGATCCCAGCACTCATGACACAAGGCAGGCGATCT | + |
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Preference number: 3 (lower is better) Translates to: SRRETSAKHGGL*IPALMTQGRRS Trigger: AGATCGCCTGCCTTGTGTCATGAGTGCTGGGATCCATAAGCCACCATGCTTGGCTGATGTTTCCCTTCTAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR GCA 72 bp | AGAATGCCCTCAGAAGAACGAACACAGGGAACAGCTTaGTATTTTCAGCCCCGCACTGAATGGGTAGATTTG | + |
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Preference number: 3 (lower is better) Translates to: RMPSEERTQGTA*YFQPRTEWVDL Trigger: CAAATCTACCCATTCAGTGCGGGGCTGAAAATAGCAAGCTGTTCCCTGTGTTCGTTCTTCTGAGGGCATTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR GCA 72 bp | TGCCTTACCCTCACCAACATTCCCAGTGCAACCTCTTaGTTCACAAAAGCACAACTAAAAATCCTCAGGAGC | + |
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Preference number: 3 (lower is better) Translates to: CLTLTNIPSATS*FTKAQLKILRS Trigger: GCTCCTGAGGATTTTTAGTTGTGCTTTTGTGAAGCAAGAGGTTGCACTGGGAATGTTGGTGAGGGTAAGGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR CCA 72 bp | GTAATGTTTTACAGAAGGAAAGCAGCCCCATTTGCTTaGTACACTGTATGGAGCTGTGATTCTACCCTGGGT | + |
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Preference number: 3 (lower is better) Translates to: VMFYRRKAAPFA*YTVWSCDSTLG Trigger: ACCCAGGGTAGAATCACAGCTCCATACAGTGTACCAAGCAAATGGGGCTGCTTTCCTTCTGTAAAACATTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR CAA 90 bp | TTCGTCATTTTACAAATAACCCCTCAATATTTGCAGACACTGTCATTCCGTGTCTGCTATGTTTCCTTCTaGACAGGCCAGGAGCCCATG | + |
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Preference number: 3 (lower is better) Translates to: FVILQITPQYLQTLSFRVCYVSF*TGQEPM Trigger: CATGGGCTCCTGGCCTGTCAAGAAGGAAACATAGCA...GACACGGAATGACAGTGTCTGCAAATATTGAGGGGTTATTTGTAAAATGACGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR TCA 72 bp | AAACACATACGTACTCTGAACACAAAGTTTGGAGAATaGAGCACACTGAATCGGGTCAGGCCACGGAACATT | + |
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Preference number: 3 (lower is better) Translates to: KHIRTLNTKFGE*STLNRVRPRNI Trigger: AATGTTCCGTGGCCTGACCCGATTCAGTGTGCTTCATTCTCCAAACTTTGTGTTCAGAGTACGTATGTGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR TCA 72 bp | AACACAGGGAACAGCTTGCTATTTTCAGCCCCGCACTaGATGGGTAGATTTGTTGTTAATCAACCTACAATT | + |
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Preference number: 3 (lower is better) Translates to: NTGNSLLFSAPH*MGRFVVNQPTI Trigger: AATTGTAGGTTGATTAACAACAAATCTACCCATTCAGTGCGGGGCTGAAAATAGCAAGCTGTTCCCTGTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR CAA 90 bp | TTCGTCATTTTACAAATAACCCCTCAATATTTGCAGACACTGTCATTCCGTGTCTTTTATAAAGCAGAATaGCCAGCCATGTCACCCTGC | + |
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Preference number: 3 (lower is better) Translates to: FVILQITPQYLQTLSFRVFYKAE*PAMSPC Trigger: GCAGGGTGACATGGCTGGCAATTCTGCTTTATAAAA...GACACGGAATGACAGTGTCTGCAAATATTGAGGGGTTATTTGTAAAATGACGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR-3UTR CAA 90 bp | ATGAAGAGCATTCTGGTCAGTCTTTTTAAAGCCAGGCAGGCACAAGCAATTTACGGGAAACATTGTGTATaGCTTTGTGTCAATAGAGGA | + |
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Preference number: 3 (lower is better) Translates to: MKSILVSLFKARQAQAIYGKHCV*LCVNRG Trigger: TCCTCTATTGACACAAAGCAATACACAATGTTTCCC...GTAAATTGCTTGTGCCTGCCTGGCTTTAAAAAGACTGACCAGAATGCTCTTCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR GCA 72 bp | ATGAAATATCTGCCTTACCCTCACCAACATTCCCAGTaGAACCTCTTGCTTCACAAAAGCACAACTAAAAAT | + |
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Preference number: 3 (lower is better) Translates to: MKYLPYPHQHSQ*NLLLHKSTTKN Trigger: ATTTTTAGTTGTGCTTTTGTGAAGCAAGAGGTTGCACTGGGAATGTTGGTGAGGGTAAGGCAGATATTTCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR CCA 72 bp | CACAACCATGGCACTAATAAAGGATCAATCTGTTTTTaGTCTCCTTTTCTATGTGCGATCATGTCTATCTAC | + |
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Preference number: 3 (lower is better) Translates to: HNHGTNKGSICF*SPFLCAIMSIY Trigger: GTAGATAGACATGATCGCACATAGAAAAGGAGACCAAAAACAGATTGATCCTTTATTAGTGCCATGGTTGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR CAA 72 bp | GAGGGGCTTCTCGCTTGCCAGTGCTATGTTTCCTTCTaGACAGGCCAGGAGCCCATGAGGATGCAGGGTTCC | + |
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Preference number: 4 (lower is better) Translates to: EGLLACQCYVSF*TGQEPMRMQGS Trigger: GGAACCCTGCATCCTCATGGGCTCCTGGCCTGTCAAGAAGGAAACATAGCACTGGCAAGCGAGAAGCCCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR GCA 90 bp | GAAGCACCGGCTGGGTCCAGAAGAAATGCCTCTCTAACCTGTGCACACTTCCTGTCCAAACTGAATATTTaGCTTGTTCCGGAGCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: EAPAGSRRNASLTCAHFLSKLNI*LVPELP Trigger: AGGGAGCTCCGGAACAAGGCAAATATTCAGTTTGGA...CAGGAAGTGTGCACAGGTTAGAGAGGCATTTCTTCTGGACCCAGCCGGTGCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR GCA 90 bp | GAAGCACCGGCTGGGTCCAGAAGAAATGCCTCTCTAACCTGTGCACACTTCCTGACAGGACCTCATCCTTaGTTATCAGCGGATGAAAAG | + |
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Preference number: 4 (lower is better) Translates to: EAPAGSRRNASLTCAHFLTGPHP*LSADEK Trigger: CTTTTCATCCGCTGATAAGCAAGGATGAGGTCCTGT...CAGGAAGTGTGCACAGGTTAGAGAGGCATTTCTTCTGGACCCAGCCGGTGCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR CCA 90 bp | GAAGCACCGGCTGGGTCCAGAAGAAATGCCTCTCTAACCTGTGCACACTTCCTGGATGCATGCCTTTTATaGCAGAAACGAACTTCTCGT | + |
|
Preference number: 4 (lower is better) Translates to: EAPAGSRRNASLTCAHFLDACLL*QKRTSR Trigger: ACGAGAAGTTCGTTTCTGCCATAAAAGGCATGCATC...CAGGAAGTGTGCACAGGTTAGAGAGGCATTTCTTCTGGACCCAGCCGGTGCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR TCA 90 bp | TTCGTCATTTTACAAATAACCCCTCAATATTTGCAGACACTGTCATTCCGTGTCGAGCCACTAGCAGCGTaGCGCTGGTCACCAGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: FVILQITPQYLQTLSFRVEPLAA*RWSPAA Trigger: TGCTGCTGGTGACCAGCGTCACGCTGCTAGTGGCTC...GACACGGAATGACAGTGTCTGCAAATATTGAGGGGTTATTTGTAAAATGACGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR TCA 90 bp | CTATGTTTCCTTCTTGACAGGCCAGGAGCCCATGAGGATGCAGGGTTCCCCCTGCCACTCCACGATTTTTaGAAAGTTAAGGTAATTGTC | + |
|
Preference number: 4 (lower is better) Translates to: LCFLLDRPGAHEDAGFPLPLHDF*KVKVIV Trigger: GACAATTACCTTAACTTTTCAAAAATCGTGGAGTGG...CAGGGGGAACCCTGCATCCTCATGGGCTCCTGGCCTGTCAAGAAGGAAACATAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR CCA 90 bp | GGAGGCAGAGGCTGTCAGATCTCTGTGAATTCGAGGCCAGTCTGGTCTATAGAGTCAGGTTTGAAAATATaGACGAGGGACAAGATCTCA | + |
|
Preference number: 4 (lower is better) Translates to: GGRGCQISVNSRPVWSIESGLKI*TRDKIS Trigger: TGAGATCTTGTCCCTCGTCCATATTTTCAAACCTGA...CTCTATAGACCAGACTGGCCTCGAATTCACAGAGATCTGACAGCCTCTGCCTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR CCA 90 bp | GAAGCACCGGCTGGGTCCAGAAGAAATGCCTCTCTAACCTGTGCACACTTCCTGATTGAGATACATCACTaGGAAAACCATAGTCCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: EAPAGSRRNASLTCAHFLIEIHH*ENHSPD Trigger: ATCAGGACTATGGTTTTCCCAGTGATGTATCTCAAT...CAGGAAGTGTGCACAGGTTAGAGAGGCATTTCTTCTGGACCCAGCCGGTGCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR CAA 72 bp | CTGCCTTACCCTCACCAACATTCCCAGTGCAACCTCTaGCTTCACAAAAGCACAACTAAAAATCCTCAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: LPYPHQHSQCNL*LHKSTTKNPQE Trigger: CTCCTGAGGATTTTTAGTTGTGCTTTTGTGAAGCAAGAGGTTGCACTGGGAATGTTGGTGAGGGTAAGGCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR CCA 90 bp | GGAGGCAGAGGCTGTCAGATCTCTGTGAATTCGAGGCCAGTCTGGTCTATAGAGGGATCTCCAACAGATTaGTTTCGTTCAAAAACATAT | + |
|
Preference number: 4 (lower is better) Translates to: GGRGCQISVNSRPVWSIEGSPTD*FRSKTY Trigger: ATATGTTTTTGAACGAAACCAATCTGTTGGAGATCC...CTCTATAGACCAGACTGGCCTCGAATTCACAGAGATCTGACAGCCTCTGCCTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR TCA 90 bp | TGTAATGTTTTACAGAAGGAAAGCAGCCCCATTTGCTTGGTACACTGTATGGAGCATTCTTGCAGATGCTaGTGTTCAACACCCCTGAGT | + |
|
Preference number: 4 (lower is better) Translates to: CNVLQKESSPICLVHCMEHSCRC*CSTPLS Trigger: ACTCAGGGGTGTTGAACATCAGCATCTGCAAGAATG...CTCCATACAGTGTACCAAGCAAATGGGGCTGCTTTCCTTCTGTAAAACATTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR GCA 90 bp | TGTAATGTTTTACAGAAGGAAAGCAGCCCCATTTGCTTGGTACACTGTATGGAGCCTTGTTGGGATGCATaGCTTTTATGGCAGAAACGA | + |
|
Preference number: 4 (lower is better) Translates to: CNVLQKESSPICLVHCMEPCWDA*LLWQKR Trigger: TCGTTTCTGCCATAAAAGGCATGCATCCCAACAAGG...CTCCATACAGTGTACCAAGCAAATGGGGCTGCTTTCCTTCTGTAAAACATTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR GCA 90 bp | TGTAATGTTTTACAGAAGGAAAGCAGCCCCATTTGCTTGGTACACTGTATGGAGTCTTCCTTGTTGGGATaGATGCCTTTTATGGCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: CNVLQKESSPICLVHCMESSLLG*MPFMAE Trigger: TTCTGCCATAAAAGGCATGCATCCCAACAAGGAAGA...CTCCATACAGTGTACCAAGCAAATGGGGCTGCTTTCCTTCTGTAAAACATTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| 3UTR CAA 72 bp | CCATCATTCGTCATTTTACAAATAACCCCTCAATATTaGCAGACACTGTCATTCCGTGTCACTGTCCTATGT | + |
|
Preference number: 4 (lower is better) Translates to: PSFVILQITPQY*QTLSFRVTVLC Trigger: ACATAGGACAGTGACACGGAATGACAGTGTCTGCAAATATTGAGGGGTTATTTGTAAAATGACGAATGATGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR TCA 90 bp | GCACTAATAAAGGATCAATCTGTTTTTGGTCTCCTTTTCTATGTGCGATCATGTATCACAGACTTCAGTTaGTTTGCGGTCTCTTTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: ALIKDQSVFGLLFYVRSCITDFS*FAVSLS Trigger: TGACAAAGAGACCGCAAATCAACTGAAGTCTGTGAT...ACATGATCGCACATAGAAAAGGAGACCAAAAACAGATTGATCCTTTATTAGTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR GCA 90 bp | GCACTAATAAAGGATCAATCTGTTTTTGGTCTCCTTTTCTATGTGCGATCATGTAGACTTCAGTTGATTTaGGGTCTCTTTGTCAATGAG | + |
|
Preference number: 4 (lower is better) Translates to: ALIKDQSVFGLLFYVRSCRLQLI*GLFVNE Trigger: CTCATTGACAAAGAGACCGCAAATCAACTGAAGTCT...ACATGATCGCACATAGAAAAGGAGACCAAAAACAGATTGATCCTTTATTAGTGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR GCA 90 bp | GCACTAATAAAGGATCAATCTGTTTTTGGTCTCCTTTTCTATGTGCGATCATGTAAAGAACACACCCAGTaGCATAATGATGTAGGGTAT | + |
|
Preference number: 4 (lower is better) Translates to: ALIKDQSVFGLLFYVRSCKEHTQ*HNDVGY Trigger: ATACCCTACATCATTATGGCACTGGGTGTGTTCTTT...ACATGATCGCACATAGAAAAGGAGACCAAAAACAGATTGATCCTTTATTAGTGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
||
| CDS TCA 90 bp | TCGTCTGGTCTACCGCCTTCTGAAAGACTCGAGCCACTAGCAGCGTaGCGCTGGTCACCAGCAGCAGCAGAGACAGCGTCCCCGCCGTGT | + |
|
Preference number: 5 (lower is better) Translates to: SSGLPPSERLEPLAA*RWSPAAAETASPPC Trigger: ACACGGCGGGGACGCTGTCTCTGCTGCTGCTGGTGACCAGCGTCACGCTGCTAGTGGCTCGAGTCTTTCAGAAGGCGGTAGACCAGACGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR CAA 90 bp | CTATGTTTCCTTCTTGACAGGCCAGGAGCCCATGAGGATGCAGGGTTCCCCCTGGGGGAGACGTCAGGTTaGAAAATATGGACGAGGGAC | + |
|
Preference number: 5 (lower is better) Translates to: LCFLLDRPGAHEDAGFPLGETSG*KIWTRD Trigger: GTCCCTCGTCCATATTTTCAAACCTGACGTCTCCCC...CAGGGGGAACCCTGCATCCTCATGGGCTCCTGGCCTGTCAAGAAGGAAACATAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR CAA 90 bp | GGAGGCAGAGGCTGTCAGATCTCTGTGAATTCGAGGCCAGTCTGGTCTATAGAGGCGTTTTCGGAGGTGTaGGCTAGTATTTCTGCAGGC | + |
|
Preference number: 5 (lower is better) Translates to: GGRGCQISVNSRPVWSIEAFSEV*ASISAG Trigger: GCCTGCAGAAATACTAGCCAACACCTCCGAAAACGC...CTCTATAGACCAGACTGGCCTCGAATTCACAGAGATCTGACAGCCTCTGCCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS TCA 90 bp | TTTTGTAATACCATATTCTTCTCGATCGTCTGGTCTACCGCCTTCTaGAAGACTCGAGCCACTAGCAGCGTGACGCTGGTCACCAGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: FCNTIFFSIVWSTAF*KTRATSSVTLVTSS Trigger: GCTGCTGGTGACCAGCGTCACGCTGCTAGTGGCTCGAGTCTTTCAGAAGGCGGTAGACCAGACGATCGAGAAGAATATGGTATTACAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS CCA 90 bp | TGCAGTTTCCCTCGGGTATACAGAAGCCAGCGTTTTCGGAGGTGTTaGCTAGTATTTCTGCAGGCACCTTATACCGAAAAGCAGGCAGTC | + |
|
Preference number: 5 (lower is better) Translates to: CSFPRVYRSQRFRRC*LVFLQAPYTEKQAV Trigger: GACTGCCTGCTTTTCGGTATAAGGTGCCTGCAGAAATACTAGCCAACACCTCCGAAAACGCTGGCTTCTGTATACCCGAGGGAAACTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS TCA 90 bp | GATAATGGGTGCACCATTCTTGCAGATGCTGATGTTCAACACCCCTaGGTCCATGCAGTTTCCCTCGGGTATACAGAAGCCAGCGTTTTC | + |
|
Preference number: 5 (lower is better) Translates to: DNGCTILADADVQHP*VHAVSLGYTEASVF Trigger: GAAAACGCTGGCTTCTGTATACCCGAGGGAAACTGCATGGACTCAGGGGTGTTGAACATCAGCATCTGCAAGAATGGTGCACCCATTATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR CAA 90 bp | GGAGGCAGAGGCTGTCAGATCTCTGTGAATTCGAGGCCAGTCTGGTCTATAGAGTCATGCTCTTCCTTGTaGGGATGCATGCCTTTTATG | + |
|
Preference number: 5 (lower is better) Translates to: GGRGCQISVNSRPVWSIESCSSL*GCMPFM Trigger: CATAAAAGGCATGCATCCCAACAAGGAAGAGCATGA...CTCTATAGACCAGACTGGCCTCGAATTCACAGAGATCTGACAGCCTCTGCCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS GCA 90 bp | TCGACACGCCAGCCACGTGAAAACCAAGCCAAAGAACACACCCAGTaGCATAATGATGTAGGGTATGTTGGTGACAACCAAAGTCGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: STRQPRENQAKEHTQ*HNDVGYVGDNQSRV Trigger: AACACGACTTTGGTTGTCACCAACATACCCTACATCATTATGGCACTGGGTGTGTTCTTTGGCTTGGTTTTCACGTGGCTGGCGTGTCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR CAA 90 bp | CTATGTTTCCTTCTTGACAGGCCAGGAGCCCATGAGGATGCAGGGTTCCCCCTGAGGATCTCCAACAGATaGGTTTCGTTCAAAAACATA | + |
|
Preference number: 5 (lower is better) Translates to: LCFLLDRPGAHEDAGFPLRISNR*VSFKNI Trigger: TATGTTTTTGAACGAAACCAATCTGTTGGAGATCCT...CAGGGGGAACCCTGCATCCTCATGGGCTCCTGGCCTGTCAAGAAGGAAACATAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR CAA 90 bp | GGAGGCAGAGGCTGTCAGATCTCTGTGAATTCGAGGCCAGTCTGGTCTATAGAGAATCACAGACTTCAGTaGATTTGCGGTCTCTTTGTC | + |
|
Preference number: 5 (lower is better) Translates to: GGRGCQISVNSRPVWSIENHRLQ*ICGLFV Trigger: GACAAAGAGACCGCAAATCAACTGAAGTCTGTGATT...CTCTATAGACCAGACTGGCCTCGAATTCACAGAGATCTGACAGCCTCTGCCTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS TCA 90 bp | TCTGACGGGAAGAGGTACAGGACCTCATCCTTGCTTATCAGCGGATaGAAAGAGTCTCCGTCTGTCCCGTTAATCATATTGCATGTGTCT | + |
|
Preference number: 5 (lower is better) Translates to: SDGKRYRTSSLLISG*KESPSVPLIILHVS Trigger: AGACACATGCAATATGATTAACGGGACAGACGGAGACTCTTTTCATCCGCTGATAAGCAAGGATGAGGTCCTGTACCTCTTCCCGTCAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS CCA 90 bp | CCACAAACGACTCATGCTCTTCCTTGTTGGGATGCATGCCTTTTATaGCAGAAACGAACTTCTCGTCGGCTTGGTAAAAGTGTGGGAAAG | + |
|
Preference number: 5 (lower is better) Translates to: PQTTHALPCWDACLL*QKRTSRRLGKSVGK Trigger: CTTTCCCACACTTTTACCAAGCCGACGAGAAGTTCGTTTCTGCCATAAAAGGCATGCATCCCAACAAGGAAGAGCATGAGTCGTTTGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS TCA 90 bp | CATTTCTCTCATAGAACAGGCCGAAATTCGGGGAGACGTCAGGTTTaGAAATATGGACGAGGGACAAGATCTCATCTTTGTAGCCCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: HFSHRTGRNSGRRQV*KYGRGTRSHLCSPR Trigger: TCTGGGGCTACAAAGATGAGATCTTGTCCCTCGTCCATATTTTCAAACCTGACGTCTCCCCGAATTTCGGCCTGTTCTATGAGAGAAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS TCA 90 bp | GGTCCACCAGTCCAGCGACGTTTTTCCATTCCACTCCACGATTTTTaGAAAGTTAAGGTAATTGTCCTCTCCAGTCAGAAACACGTACTC | + |
|
Preference number: 5 (lower is better) Translates to: GPPVQRRFSIPLHDF*KVKVIVLSSQKHVL Trigger: GAGTACGTGTTTCTGACTGGAGAGGACAATTACCTTAACTTTTCAAAAATCGTGGAGTGGAATGGAAAAACGTCGCTGGACTGGTGGACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS GCA 90 bp | CTCAAAATAATTCCAGTCAAGGGATTAATGTCCACAAACGACTCATaGTCTTCCTTGTTGGGATGCATGCCTTTTATGGCAGAAACGAAC | + |
|
Preference number: 5 (lower is better) Translates to: LKIIPVKGLMSTNDS*SSLLGCMPFMAETN Trigger: GTTCGTTTCTGCCATAAAAGGCATGCATCCCAACAAGGAAGAGCATGAGTCGTTTGTGGACATTAATCCCTTGACTGGAATTATTTTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR CAA 90 bp | GCACTAATAAAGGATCAATCTGTTTTTGGTCTCCTTTTCTATGTGCGATCATGTGAACTTCTCGTCGGCTaGGTAAAAGTGTGGGAAAGA | + |
|
Preference number: 5 (lower is better) Translates to: ALIKDQSVFGLLFYVRSCELLVG*VKVWER Trigger: TCTTTCCCACACTTTTACCAAGCCGACGAGAAGTTC...ACATGATCGCACATAGAAAAGGAGACCAAAAACAGATTGATCCTTTATTAGTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR CAA 90 bp | TGTAATGTTTTACAGAAGGAAAGCAGCCCCATTTGCTTGGTACACTGTATGGAGTTGATCTGGAATCTCTaGGCCCCTCTCAAAATAATT | + |
|
Preference number: 5 (lower is better) Translates to: CNVLQKESSPICLVHCMELIWNL*APLKII Trigger: AATTATTTTGAGAGGGGCCAAGAGATTCCAGATCAA...CTCCATACAGTGTACCAAGCAAATGGGGCTGCTTTCCTTCTGTAAAACATTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR CAA 90 bp | GCACTAATAAAGGATCAATCTGTTTTTGGTCTCCTTTTCTATGTGCGATCATGTATGAGGACACTCTCATaGAGATACATCACTGGGAAA | + |
|
Preference number: 5 (lower is better) Translates to: ALIKDQSVFGLLFYVRSCMRTLS*RYITGK Trigger: TTTCCCAGTGATGTATCTCAATGAGAGTGTCCTCAT...ACATGATCGCACATAGAAAAGGAGACCAAAAACAGATTGATCCTTTATTAGTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS GCA 90 bp | GTCAACGTTAGGATCTCCAACAGATTGGTTTCGTTCAAAAACATATaGCTTATTGGTGACAGCAGATATAGTTGTTCCATTTTCTCCAAA | + |
|
Preference number: 5 (lower is better) Translates to: VNVRISNRLVSFKNI*LIGDSRYSCSIFSK Trigger: TTTGGAGAAAATGGAACAACTATATCTGCTGTCACCAATAAGGCATATGTTTTTGAACGAAACCAATCTGTTGGAGATCCTAACGTTGAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS-3UTR CAA 90 bp | GCACTAATAAAGGATCAATCTGTTTTTGGTCTCCTTTTCTATGTGCGATCATGTCAGGAATTAAAGACCTaGGTGCCATTTTGTAATACC | + |
|
Preference number: 5 (lower is better) Translates to: ALIKDQSVFGLLFYVRSCQELKT*VPFCNT Trigger: GGTATTACAAAATGGCACCAAGGTCTTTAATTCCTG...ACATGATCGCACATAGAAAAGGAGACCAAAAACAGATTGATCCTTTATTAGTGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS TCA 72 bp | ACCATATTCTTCTCGATCGTCTGGTCTACCGCCTTCTaGAAGACTCGAGCCACTAGCAGCGTGACGCTGGTC | + |
|
Preference number: 6 (lower is better) Translates to: TIFFSIVWSTAF*KTRATSSVTLV Trigger: GACCAGCGTCACGCTGCTAGTGGCTCGAGTCTTTCAGAAGGCGGTAGACCAGACGATCGAGAAGAATATGGT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS TCA 72 bp | TGCACCATTCTTGCAGATGCTGATGTTCAACACCCCTaGGTCCATGCAGTTTCCCTCGGGTATACAGAAGCC | + |
|
Preference number: 6 (lower is better) Translates to: CTILADADVQHP*VHAVSLGYTEA Trigger: GGCTTCTGTATACCCGAGGGAAACTGCATGGACTCAGGGGTGTTGAACATCAGCATCTGCAAGAATGGTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS GCA 72 bp | ACAAGTCTGACGGGAAGAGGTACAGGACCTCATCCTTaGTTATCAGCGGATGAAAAGAGTCTCCGTCTGTCC | + |
|
Preference number: 6 (lower is better) Translates to: TSLTGRGTGPHP*LSADEKSLRLS Trigger: GGACAGACGGAGACTCTTTTCATCCGCTGATAAGCAAGGATGAGGTCCTGTACCTCTTCCCGTCAGACTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS CAA 90 bp | ATGCAGTTTCCCTCGGGTATACAGAAGCCAGCGTTTTCGGAGGTGTaGGCTAGTATTTCTGCAGGCACCTTATACCGAAAAGCAGGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: MQFPSGIQKPAFSEV*ASISAGTLYRKAGS Trigger: ACTGCCTGCTTTTCGGTATAAGGTGCCTGCAGAAATACTAGCCAACACCTCCGAAAACGCTGGCTTCTGTATACCCGAGGGAAACTGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS CCA 72 bp | CCTCGGGTATACAGAAGCCAGCGTTTTCGGAGGTGTTaGCTAGTATTTCTGCAGGCACCTTATACCGAAAAG | + |
|
Preference number: 6 (lower is better) Translates to: PRVYRSQRFRRC*LVFLQAPYTEK Trigger: CTTTTCGGTATAAGGTGCCTGCAGAAATACTAGCCAACACCTCCGAAAACGCTGGCTTCTGTATACCCGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS CAA 90 bp | CCAGTCAAGGGATTAATGTCCACAAACGACTCATGCTCTTCCTTGTaGGGATGCATGCCTTTTATGGCAGAAACGAACTTCTCGTCGGCT | + |
|
Preference number: 6 (lower is better) Translates to: PVKGLMSTNDSCSSL*GCMPFMAETNFSSA Trigger: AGCCGACGAGAAGTTCGTTTCTGCCATAAAAGGCATGCATCCCAACAAGGAAGAGCATGAGTCGTTTGTGGACATTAATCCCTTGACTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS GCA 72 bp | ATGTCCACAAACGACTCATGCTCTTCCTTGTTGGGATaGATGCCTTTTATGGCAGAAACGAACTTCTCGTCG | + |
|
Preference number: 6 (lower is better) Translates to: MSTNDSCSSLLG*MPFMAETNFSS Trigger: CGACGAGAAGTTCGTTTCTGCCATAAAAGGCATGCATCCCAACAAGGAAGAGCATGAGTCGTTTGTGGACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS CCA 72 bp | TATGGCCCCACTTCTTCTAGTAGGGGGATTTCTCCTTaGAGGATCTCCTCAGGATTGGTGACATTGAAGAAA | + |
|
Preference number: 6 (lower is better) Translates to: YGPTSSSRGISP*RISSGLVTLKK Trigger: TTTCTTCAATGTCACCAATCCTGAGGAGATCCTCCAAGGAGAAATCCCCCTACTAGAAGAAGTGGGGCCATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
||
| CDS CAA 90 bp | TGGATGTACACAGGTAGAGGGGGCTTCTCCCAGGAATTAAAGACCTaGGTGCCATTTTGTAATACCATATTCTTCTCGATCGTCTGGTCT | + |
|
Preference number: 6 (lower is better) Translates to: WMYTGRGGFSQELKT*VPFCNTIFFSIVWS Trigger: AGACCAGACGATCGAGAAGAATATGGTATTACAAAATGGCACCAAGGTCTTTAATTCCTGGGAGAAGCCCCCTCTACCTGTGTACATCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS CAA 90 bp | ATTCCAGTCAAGGGATTAATGTCCACAAACGACTCATGCTCTTCCTaGTTGGGATGCATGCCTTTTATGGCAGAAACGAACTTCTCGTCG | + |
|
Preference number: 6 (lower is better) Translates to: IPVKGLMSTNDSCSS*LGCMPFMAETNFSS Trigger: CGACGAGAAGTTCGTTTCTGCCATAAAAGGCATGCATCCCAACAAGGAAGAGCATGAGTCGTTTGTGGACATTAATCCCTTGACTGGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
||
| CDS TCA 72 bp | CATAGAACAGGCCGAAATTCGGGGAGACGTCAGGTTTaGAAATATGGACGAGGGACAAGATCTCATCTTTGT | + |
|
Preference number: 6 (lower is better) Translates to: HRTGRNSGRRQV*KYGRGTRSHLC Trigger: ACAAAGATGAGATCTTGTCCCTCGTCCATATTTTCAAACCTGACGTCTCCCCGAATTTCGGCCTGTTCTATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
||
| CDS TCA 72 bp | AAGAGGTACAGGACCTCATCCTTGCTTATCAGCGGATaGAAAGAGTCTCCGTCTGTCCCGTTAATCATATTG | + |
|
Preference number: 6 (lower is better) Translates to: KRYRTSSLLISG*KESPSVPLIIL Trigger: CAATATGATTAACGGGACAGACGGAGACTCTTTTCATCCGCTGATAAGCAAGGATGAGGTCCTGTACCTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
||
| CDS CCA 72 bp | ACTCATGCTCTTCCTTGTTGGGATGCATGCCTTTTATaGCAGAAACGAACTTCTCGTCGGCTTGGTAAAAGT | + |
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Preference number: 6 (lower is better) Translates to: THALPCWDACLL*QKRTSRRLGKS Trigger: ACTTTTACCAAGCCGACGAGAAGTTCGTTTCTGCCATAAAAGGCATGCATCCCAACAAGGAAGAGCATGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS GCA 72 bp | AGATATAGTTGTTCCATTTTCTCCAAACTGAATATTTaGCTTGTTCCGGAGCTCCCTGTAGGTGTATGGCCC | + |
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Preference number: 6 (lower is better) Translates to: RYSCSIFSKLNI*LVPELPVGVWP Trigger: GGGCCATACACCTACAGGGAGCTCCGGAACAAGGCAAATATTCAGTTTGGAGAAAATGGAACAACTATATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS CAA 72 bp | ACAGGTAGAGGGGGCTTCTCCCAGGAATTAAAGACCTaGGTGCCATTTTGTAATACCATATTCTTCTCGATC | + |
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Preference number: 6 (lower is better) Translates to: TGRGGFSQELKT*VPFCNTIFFSI Trigger: GATCGAGAAGAATATGGTATTACAAAATGGCACCAAGGTCTTTAATTCCTGGGAGAAGCCCCCTCTACCTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS CAA 72 bp | GGATTAATGTCCACAAACGACTCATGCTCTTCCTTGTaGGGATGCATGCCTTTTATGGCAGAAACGAACTTC | + |
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Preference number: 6 (lower is better) Translates to: GLMSTNDSCSSL*GCMPFMAETNF Trigger: GAAGTTCGTTTCTGCCATAAAAGGCATGCATCCCAACAAGGAAGAGCATGAGTCGTTTGTGGACATTAATCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS CAA 72 bp | AAGGGATTAATGTCCACAAACGACTCATGCTCTTCCTaGTTGGGATGCATGCCTTTTATGGCAGAAACGAAC | + |
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Preference number: 6 (lower is better) Translates to: KGLMSTNDSCSS*LGCMPFMAETN Trigger: GTTCGTTTCTGCCATAAAAGGCATGCATCCCAACAAGGAAGAGCATGAGTCGTTTGTGGACATTAATCCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS CAA 90 bp | GGGTATGTTGGTGACAACCAAAGTCGTGTTAATCACAGACTTCAGTaGATTTGCGGTCTCTTTGTCAATGAGGACACTCTCATTGAGATA | + |
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Preference number: 6 (lower is better) Translates to: GYVGDNQSRVNHRLQ*ICGLFVNEDTLIEI Trigger: TATCTCAATGAGAGTGTCCTCATTGACAAAGAGACCGCAAATCAACTGAAGTCTGTGATTAACACGACTTTGGTTGTCACCAACATACCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS TCA 72 bp | GTCCAGCGACGTTTTTCCATTCCACTCCACGATTTTTaGAAAGTTAAGGTAATTGTCCTCTCCAGTCAGAAA | + |
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Preference number: 6 (lower is better) Translates to: VQRRFSIPLHDF*KVKVIVLSSQK Trigger: TTTCTGACTGGAGAGGACAATTACCTTAACTTTTCAAAAATCGTGGAGTGGAATGGAAAAACGTCGCTGGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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| CDS CCA 72 bp | GTTCTAATCAAGTCAACGTTAGGATCTCCAACAGATTaGTTTCGTTCAAAAACATATGCCTTATTGGTGACA | + |
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Preference number: 6 (lower is better) Translates to: VLIKSTLGSPTD*FRSKTYALLVT Trigger: TGTCACCAATAAGGCATATGTTTTTGAACGAAACCAATCTGTTGGAGATCCTAACGTTGACTTGATTAGAAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031377.9 |
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