RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SCARA5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022032

Ensembl transcript IDs: ENSMUST00000022610.15, ENSMUST00000069226.7

Found 251 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCTCTTCCCCAGCCTCTGACTGGGGAGCCTCACACCAGCCAGCTTTaGCTTCCACCTCCTCAGTCTCAGAGCGTAACCAGCGCTGTCCAG +
Preference number: 1 (lower is better)
Translates to: SLPQPLTGEPHTSQL*LPPPQSQSVTSAVQ
Trigger: CTGGACAGCGCTGGTTACGCTCTGAGACTGAGGAGGTGGAAGCCAAAGCTGGCTGGTGTGAGGCTCCCCAGTCAGAGGCTGGGGAAGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR GCA 90 bp TGGCAAAGGCACTGGTTGCCAGAACCCAGCCAGGCAAGCTGGCCCTaGACCACTCAGCTCAGGGTTTTGAGGTTCTCTGGTGCTGCGAAC +
Preference number: 1 (lower is better)
Translates to: WQRHWLPEPSQASWP*TTQLRVLRFSGAAN
Trigger: GTTCGCAGCACCAGAGAACCTCAAAACCCTGAGCTGAGTGGTGCAGGGCCAGCTTGCCTGGCTGGGTTCTGGCAACCAGTGCCTTTGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR CCA 90 bp AGCCTTTGGCAAAGGCACTGGTTGCCAGAACCCAGCCAGGCAAGCTaGCCCTGCACCACTCAGCTCAGGGTTTTGAGGTTCTCTGGTGCT +
Preference number: 1 (lower is better)
Translates to: SLWQRHWLPEPSQAS*PCTTQLRVLRFSGA
Trigger: AGCACCAGAGAACCTCAAAACCCTGAGCTGAGTGGTGCAGGGCCAGCTTGCCTGGCTGGGTTCTGGCAACCAGTGCCTTTGCCAAAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR TCA 90 bp GGTCTCAGTCTTGCTCATTCTTGGTCTTCTAACTTGGAAGCCAGATaGACGGGTCAGGTGAGCACTCCCAGGAGGCAGAGTCCTGCCCTG +
Preference number: 1 (lower is better)
Translates to: GLSLAHSWSSNLEAR*TGQVSTPRRQSPAL
Trigger: CAGGGCAGGACTCTGCCTCCTGGGAGTGCTCACCTGACCCGTTCATCTGGCTTCCAAGTTAGAAGACCAAGAATGAGCAAGACTGAGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR TCA 90 bp GCAAAGGTTCAGTCAGCCTGGGTCTTCCGTCAGCGTCTAGAGCCATaGGGAAAGAGGAACTCACTAGGAACTCTGGGGAGCCCAACCATA +
Preference number: 1 (lower is better)
Translates to: AKVQSAWVFRQRLEP*GKRNSLGTLGSPTI
Trigger: TATGGTTGGGCTCCCCAGAGTTCCTAGTGAGTTCCTCTTTCCTCATGGCTCTAGACGCTGACGGAAGACCCAGGCTGACTGAACCTTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR CCA 90 bp AACCTGAGGAATTTGGTAAAGGTTTCAAGCCTTTGGCAAAGGCACTaGTTGCCAGAACCCAGCCAGGCAAGCTGGCCCTGCACCACTCAG +
Preference number: 1 (lower is better)
Translates to: NLRNLVKVSSLWQRH*LPEPSQASWPCTTQ
Trigger: CTGAGTGGTGCAGGGCCAGCTTGCCTGGCTGGGTTCTGGCAACCAGTGCCTTTGCCAAAGGCTTGAAACCTTTACCAAATTCCTCAGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR CCA 90 bp GAGTTGCAGGTTAACCTGAGGAATTTGGTAAAGGTTTCAAGCCTTTaGCAAAGGCACTGGTTGCCAGAACCCAGCCAGGCAAGCTGGCCC +
Preference number: 1 (lower is better)
Translates to: ELQVNLRNLVKVSSL*QRHWLPEPSQASWP
Trigger: GGGCCAGCTTGCCTGGCTGGGTTCTGGCAACCAGTGCCTTTGCCAAAGGCTTGAAACCTTTACCAAATTCCTCAGGTTAACCTGCAACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR GCA 90 bp GAAAGACAGAATGTAGGTCCCACTGAGCACTTTGGAGCAGTTGTCTaGAAAGAGAGTGACATCCGGTCACCTTCGAACCAGAGTAGGGCC +
Preference number: 1 (lower is better)
Translates to: ERQNVGPTEHFGAVV*KESDIRSPSNQSRA
Trigger: GGCCCTACTCTGGTTCGAAGGTGACCGGATGTCACTCTCTTTGCAGACAACTGCTCCAAAGTGCTCAGTGGGACCTACATTCTGTCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR TCA 90 bp ATGGTAGACTTCCAGTACCATGGTTCTAGAGTTCCTGTGCCCCTTTaGTGCTTTTCTTCACAGCGCGAGAGGCTTACAGTCTGCCAAGCC +
Preference number: 1 (lower is better)
Translates to: MVDFQYHGSRVPVPL*CFSSQRERLTVCQA
Trigger: GGCTTGGCAGACTGTAAGCCTCTCGCGCTGTGAAGAAAAGCATCAAAGGGGCACAGGAACTCTAGAACCATGGTACTGGAAGTCTACCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR GCA 90 bp ACGCAATTTAGGAAGCTGAGGCTGTGGGAAGATAACCAACCCCACTaGCAACCAGAGTCAGACCTCAGTTCTGAACTGAGGCAAAGGTTC +
Preference number: 1 (lower is better)
Translates to: TQFRKLRLWEDNQPH*QPESDLSSELRQRF
Trigger: GAACCTTTGCCTCAGTTCAGAACTGAGGTCTGACTCTGGTTGGCAGTGGGGTTGGTTATCTTCCCACAGCCTCAGCTTCCTAAATTGCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR GCA 90 bp TGTGACTCTATTTTAGCCAGACAGGTCTGCACTCAGTTGCTGCCCTaGAGCTCCCCGGTTCTAGAACACATGTACAATCTAGTTCAACCT +
Preference number: 1 (lower is better)
Translates to: CDSILARQVCTQLLP*SSPVLEHMYNLVQP
Trigger: AGGTTGAACTAGATTGTACATGTGTTCTAGAACCGGGGAGCTGCAGGGCAGCAACTGAGTGCAGACCTGTCTGGCTAAAATAGAGTCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CCA 90 bp AGAACCCTGAGACACAGTCTAACGACTGATGGACTCAGGTTAATGTaGATAGCTCCCATGTCACCTTTCAAATCAGCCCTCCTGCGTGTA +
Preference number: 1 (lower is better)
Translates to: RTLRHSLTTDGLRLM*IAPMSPFKSALLRV
Trigger: TACACGCAGGAGGGCTGATTTGAAAGGTGACATGGGAGCTATCCACATTAACCTGAGTCCATCAGTCGTTAGACTGTGTCTCAGGGTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CCA 90 bp TCTGAATATAGTCTCCTTATGACAGTAAAGAAACCTTCCTTCCCCTaGGAGACAAATCCAGAGCTGATGCCAGTCCCTGGCTGGGTCATC +
Preference number: 1 (lower is better)
Translates to: SEYSLLMTVKKPSFP*ETNPELMPVPGWVI
Trigger: GATGACCCAGCCAGGGACTGGCATCAGCTCTGGATTTGTCTCCCAGGGGAAGGAAGGTTTCTTTACTGTCATAAGGAGACTATATTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR CCA 90 bp CACTGTGTCCATCAGAATTTCCACAGTTTTCTGAAAGATGAGCCATaGGCCTCTCCTCAGAGCCTGGGTCTCAGGGATATAAGTAACACC +
Preference number: 1 (lower is better)
Translates to: HCVHQNFHSFLKDEP*ASPQSLGLRDISNT
Trigger: GGTGTTACTTATATCCCTGAGACCCAGGCTCTGAGGAGAGGCCCATGGCTCATCTTTCAGAAAACTGTGGAAATTCTGATGGACACAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR GCA 90 bp GTTATTTCCCTCCATTCCCAGCTCCAGCTGGGTTTATCAGGTATCTaGCATTTTCTTATGTCTCCCATTGGTTTCTCCACTGCTCCTTCC +
Preference number: 1 (lower is better)
Translates to: VISLHSQLQLGLSGI*HFLMSPIGFSTAPS
Trigger: GGAAGGAGCAGTGGAGAAACCAATGGGAGACATAAGAAAATGGCAGATACCTGATAAACCCAGCTGGAGCTGGGAATGGAGGGAAATAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CCA 90 bp TCCCCGGTTCTAGAACACATGTACAATCTAGTTCAACCTCCTCCCTaGGTCAAGAGCAAATTATGTTCTCTTTGTAAGCAGGGGGAAGTG +
Preference number: 1 (lower is better)
Translates to: SPVLEHMYNLVQPPP*VKSKLCSLCKQGEV
Trigger: CACTTCCCCCTGCTTACAAAGAGAACATAATTTGCTCTTGACCCAGGGAGGAGGTTGAACTAGATTGTACATGTGTTCTAGAACCGGGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR TCA 90 bp AAATTATGTTCTCTTTGTAAGCAGGGGGAAGTGCAACTAAAGGCTTaGGGAGTTCCGAGGCCTCTCATTTCCCATGGGAAGGTTATAGGA +
Preference number: 1 (lower is better)
Translates to: KLCSLCKQGEVQLKA*GVPRPLISHGKVIG
Trigger: TCCTATAACCTTCCCATGGGAAATGAGAGGCCTCGGAACTCCTCAAGCCTTTAGTTGCACTTCCCCCTGCTTACAAAGAGAACATAATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR TCA 90 bp TCTGTAACCAAGAGACCAAAGGGAATATGGATCCCCAGGCCCTTATaGATCTTCTTCAGAGAGCTCAACAAACTGCTGGTTCAAATGACT +
Preference number: 1 (lower is better)
Translates to: SVTKRPKGIWIPRPL*IFFRELNKLLVQMT
Trigger: AGTCATTTGAACCAGCAGTTTGTTGAGCTCTCTGAAGAAGATTCATAAGGGCCTGGGGATCCATATTCCCTTTGGTCTCTTGGTTACAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR GCA 90 bp GTGCTACGCTTGTACAGGGATACATACATCGGCTCTGGAAGAAAGTaGATGAGCACATGCATGTTATGTAAACATAACAGTTGGTCAGAT +
Preference number: 1 (lower is better)
Translates to: VLRLYRDTYIGSGRK*MSTCMLCKHNSWSD
Trigger: ATCTGACCAACTGTTATGTTTACATAACATGCATGTGCTCATGCACTTTCTTCCAGAGCCGATGTATGTATCCCTGTACAAGCGTAGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR TCA 90 bp TACGCTTGTACAGGGATACATACATCGGCTCTGGAAGAAAGTGCATaGGCACATGCATGTTATGTAAACATAACAGTTGGTCAGATCATG +
Preference number: 1 (lower is better)
Translates to: YACTGIHTSALEESA*AHACYVNITVGQIM
Trigger: CATGATCTGACCAACTGTTATGTTTACATAACATGCATGTGCTCATGCACTTTCTTCCAGAGCCGATGTATGTATCCCTGTACAAGCGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR GCA 90 bp TACAGGGATACATACATCGGCTCTGGAAGAAAGTGCATGAGCACATaGATGTTATGTAAACATAACAGTTGGTCAGATCATGAGAACAGT +
Preference number: 1 (lower is better)
Translates to: YRDTYIGSGRKCMST*MLCKHNSWSDHENS
Trigger: ACTGTTCTCATGATCTGACCAACTGTTATGTTTACATAACATGCATGTGCTCATGCACTTTCTTCCAGAGCCGATGTATGTATCCCTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR CCA 90 bp ACCCAGCCAGGCAAGCTGGCCCTGCACCACTCAGCTCAGGGTTTTGAGGTTCTCCCCAGCGCTCAGCTCTaGGCCTCTAACAGTGGGGAA +
Preference number: 2 (lower is better)
Translates to: TQPGKLALHHSAQGFEVLPSAQL*ASNSGE
Trigger: TTCCCCACTGTTAGAGGCCCAGAGCTGAGCGCTGGG...GAGAACCTCAAAACCCTGAGCTGAGTGGTGCAGGGCCAGCTTGCCTGGCTGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR TCA 90 bp ACCCAGCCAGGCAAGCTGGCCCTGCACCACTCAGCTCAGGGTTTTGAGGTTCTCTCACTCTGCTGGCTGTaGCCTCCTGTTTGGGTTCTC +
Preference number: 2 (lower is better)
Translates to: TQPGKLALHHSAQGFEVLSLCWL*PPVWVL
Trigger: GAGAACCCAAACAGGAGGTCACAGCCAGCAGAGTGA...GAGAACCTCAAAACCCTGAGCTGAGTGGTGCAGGGCCAGCTTGCCTGGCTGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR CCA 90 bp CCAGGCAAGCTGGCCCTGCACCACTCAGCTCAGGGTTTTGAGGTTCTCTGGTGCCACCTGCCCGTTCCATaGCACAAGGAGACCAATTCT +
Preference number: 2 (lower is better)
Translates to: PGKLALHHSAQGFEVLWCHLPVP*HKETNS
Trigger: AGAATTGGTCTCCTTGTGCCATGGAACGGGCAGGTG...GCACCAGAGAACCTCAAAACCCTGAGCTGAGTGGTGCAGGGCCAGCTTGCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR TCA 90 bp CCAGAGTCAGACCTCAGTTCTGAACTGAGGCAAAGGTTCAGTCAGCCTGGGTCTAGACAAATCCAGAGCTaGTGCCAGTCCCTGGCTGGG +
Preference number: 2 (lower is better)
Translates to: PESDLSSELRQRFSQPGSRQIQS*CQSLAG
Trigger: CCCAGCCAGGGACTGGCATCAGCTCTGGATTTGTCT...AGACCCAGGCTGACTGAACCTTTGCCTCAGTTCAGAACTGAGGTCTGACTCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR GCA 90 bp GTTCACACTGACTGCAAGCATGGCCCCCAGGAGTTTTCCCTAATACCACACACTGAGAGGCTTACAGTCTaGCAAGCCCCCTCACCTGCC +
Preference number: 2 (lower is better)
Translates to: VHTDCKHGPQEFSLIPHTERLTV*QAPSPA
Trigger: GGCAGGTGAGGGGGCTTGGCAGACTGTAAGCCTCTC...AGTGTGTGGTATTAGGGAAAACTCCTGGGGGCCATGCTTGCAGTCAGTGTGAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR CCA 90 bp ACTAGGCATGGCCAGACGCAATTTAGGAAGCTGAGGCTGTGGGAAGATAACCAATCCCCAGCCTCTGACTaGGGAGCCTCACACCAGCCA +
Preference number: 2 (lower is better)
Translates to: TRHGQTQFRKLRLWEDNQSPASD*GASHQP
Trigger: TGGCTGGTGTGAGGCTCCCCAGTCAGAGGCTGGGGA...TTGGTTATCTTCCCACAGCCTCAGCTTCCTAAATTGCGTCTGGCCATGCCTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR CCA 90 bp TCCCTCCATTCCCAGCTCCAGCTGGGTTTATCAGGTATCTGCCATTTTCTTATGCAGAGTAGGGCCAACTaGCAGCAAGGGTGGGGTGGT +
Preference number: 2 (lower is better)
Translates to: SLHSQLQLGLSGICHFLMQSRAN*QQGWGG
Trigger: ACCACCCCACCCTTGCTGCCAGTTGGCCCTACTCTG...CATAAGAAAATGGCAGATACCTGATAAACCCAGCTGGAGCTGGGAATGGAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR CCA 90 bp GTTCACACTGACTGCAAGCATGGCCCCCAGGAGTTTTCCCTAATACCACACACTCACACCAGCCAGCTTTaGCTTCCACCTCCTCAGTCT +
Preference number: 2 (lower is better)
Translates to: VHTDCKHGPQEFSLIPHTHTSQL*LPPPQS
Trigger: AGACTGAGGAGGTGGAAGCCAAAGCTGGCTGGTGTG...AGTGTGTGGTATTAGGGAAAACTCCTGGGGGCCATGCTTGCAGTCAGTGTGAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR TCA 90 bp AATGACCAAGATCAAATATTGGCTGAGTGGCCAGTCAGGATCTTTGGGGCAACTGGCAGAGTCCTGCCCTaGGGGACATGCCTTGCCTTA +
Preference number: 2 (lower is better)
Translates to: NDQDQILAEWPVRIFGATGRVLP*GTCLAL
Trigger: TAAGGCAAGGCATGTCCCTCAGGGCAGGACTCTGCC...AGTTGCCCCAAAGATCCTGACTGGCCACTCAGCCAATATTTGATCTTGGTCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR TCA 90 bp CCAAGGAACCAGGGAATGACTAAGAAAGCCCCAGTCGTAGTAGGCACTGTGTCCCAGCGTCTAGAGCCATaGGGAAAGAGGAACTCACTA +
Preference number: 2 (lower is better)
Translates to: PRNQGMTKKAPVVVGTVSQRLEP*GKRNSL
Trigger: TAGTGAGTTCCTCTTTCCTCATGGCTCTAGACGCTG...GGACACAGTGCCTACTACGACTGGGGCTTTCTTAGTCATTCCCTGGTTCCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR GCA 90 bp AGGCCTCTCATTTCCCATGGGAAGGTTATAGGAATTTCATACTTCTTTCTACCCGTGGCTCAACAGCAGTaGCCTGGCCTTGGGCTGCGG +
Preference number: 2 (lower is better)
Translates to: RPLISHGKVIGISYFFLPVAQQQ*PGLGLR
Trigger: CCGCAGCCCAAGGCCAGGGCACTGCTGTTGAGCCAC...GGGTAGAAAGAAGTATGAAATTCCTATAACCTTCCCATGGGAAATGAGAGGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR GCA 90 bp CTAACGACTGATGGACTCAGGTTAATGTGGATAGCTCCCATGTCACCTTTCAAACAGGAGGCAGAGTCCTaGCCTGAGGGACATGCCTTG +
Preference number: 2 (lower is better)
Translates to: LTTDGLRLMWIAPMSPFKQEAES*PEGHAL
Trigger: CAAGGCATGTCCCTCAGGGCAGGACTCTGCCTCCTG...TTTGAAAGGTGACATGGGAGCTATCCACATTAACCTGAGTCCATCAGTCGTTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR GCA 90 bp AAACCTATCCACACTCCCAAATCCCACAACTCCAGATTCAATATGGGTGAACACCAGGCAAGCTGGCCCTaGACCACTCAGCTCAGGGTT +
Preference number: 2 (lower is better)
Translates to: KPIHTPKSHNSRFNMGEHQASWP*TTQLRV
Trigger: AACCCTGAGCTGAGTGGTGCAGGGCCAGCTTGCCTG...GTGTTCACCCATATTGAATCTGGAGTTGTGGGATTTGGGAGTGTGGATAGGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR TCA 90 bp ACTAGGCATGGCCAGACGCAATTTAGGAAGCTGAGGCTGTGGGAAGATAACCAAACCTCAGTTCTGAACTaGGGCAAAGGTTCAGTCAGC +
Preference number: 2 (lower is better)
Translates to: TRHGQTQFRKLRLWEDNQTSVLN*GKGSVS
Trigger: GCTGACTGAACCTTTGCCTCAGTTCAGAACTGAGGT...TTGGTTATCTTCCCACAGCCTCAGCTTCCTAAATTGCGTCTGGCCATGCCTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR CCA 90 bp CTAACGACTGATGGACTCAGGTTAATGTGGATAGCTCCCATGTCACCTTTCAAAGCAGCAAGGGTGGGGTaGTGTTGGATCAGGCATGAG +
Preference number: 2 (lower is better)
Translates to: LTTDGLRLMWIAPMSPFKAARVG*CWIRHE
Trigger: CTCATGCCTGATCCAACACCACCCCACCCTTGCTGC...TTTGAAAGGTGACATGGGAGCTATCCACATTAACCTGAGTCCATCAGTCGTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR CCA 90 bp GTTCACACTGACTGCAAGCATGGCCCCCAGGAGTTTTCCCTAATACCACACACTGGTTTTGAGGTTCTCTaGTGCTGCGAACTCACACTT +
Preference number: 2 (lower is better)
Translates to: VHTDCKHGPQEFSLIPHTGFEVL*CCELTL
Trigger: AAGTGTGAGTTCGCAGCACCAGAGAACCTCAAAACC...AGTGTGTGGTATTAGGGAAAACTCCTGGGGGCCATGCTTGCAGTCAGTGTGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR CAA 90 bp GATTGTGTCTGTGACTCTATTTTAGCCAGACAGGTCTGCACTCAGTaGCTGCCCTGCAGCTCCCCGGTTCTAGAACACATGTACAATCTA +
Preference number: 2 (lower is better)
Translates to: DCVCDSILARQVCTQ*LPCSSPVLEHMYNL
Trigger: TAGATTGTACATGTGTTCTAGAACCGGGGAGCTGCAGGGCAGCAACTGAGTGCAGACCTGTCTGGCTAAAATAGAGTCACAGACACAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR TCA 90 bp CATATTGCAAGCAAGAATGACCAAGATCAAATATTGGCTGAGTGGCCAGTCAGGGTGCAACTAAAGGCTTaGGGAGTTCCGAGGCCTCTC +
Preference number: 2 (lower is better)
Translates to: HIASKNDQDQILAEWPVRVQLKA*GVPRPL
Trigger: GAGAGGCCTCGGAACTCCTCAAGCCTTTAGTTGCAC...CCTGACTGGCCACTCAGCCAATATTTGATCTTGGTCATTCTTGCTTGCAATATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR GCA 90 bp TCCCTCCATTCCCAGCTCCAGCTGGGTTTATCAGGTATCTGCCATTTTCTTATGTTTGGAGCAGTTGTCTaGAAAGAGAGTGACATCCGG +
Preference number: 2 (lower is better)
Translates to: SLHSQLQLGLSGICHFLMFGAVV*KESDIR
Trigger: CCGGATGTCACTCTCTTTGCAGACAACTGCTCCAAA...CATAAGAAAATGGCAGATACCTGATAAACCCAGCTGGAGCTGGGAATGGAGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR GCA 90 bp ACGCAATTTAGGAAGCTGAGGCTGTGGGAAGATAACCAACCCCACTGCCAACCAGTTCTAGAGTTCCTGTaGCCCTTTGATGCTTTTCTT +
Preference number: 2 (lower is better)
Translates to: TQFRKLRLWEDNQPHCQPVLEFL*PFDAFL
Trigger: AAGAAAAGCATCAAAGGGGCACAGGAACTCTAGAAC...TGGTTGGCAGTGGGGTTGGTTATCTTCCCACAGCCTCAGCTTCCTAAATTGCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR TCA 90 bp CATATTGCAAGCAAGAATGACCAAGATCAAATATTGGCTGAGTGGCCAGTCAGGGAATGTAGGTCCCACTaGGCACTTTGGAGCAGTTGT +
Preference number: 2 (lower is better)
Translates to: HIASKNDQDQILAEWPVRECRSH*ALWSSC
Trigger: ACAACTGCTCCAAAGTGCTCAGTGGGACCTACATTC...CCTGACTGGCCACTCAGCCAATATTTGATCTTGGTCATTCTTGCTTGCAATATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR GCA 90 bp TACATCGGCTCTGGAAGAAAGTGCATGAGCACATGCATGTTATGTAAACATAACACTCAGTTGCTGCCCTaGAGCTCCCCGGTTCTAGAA +
Preference number: 2 (lower is better)
Translates to: YIGSGRKCMSTCMLCKHNTQLLP*SSPVLE
Trigger: TTCTAGAACCGGGGAGCTGCAGGGCAGCAACTGAGT...GTTATGTTTACATAACATGCATGTGCTCATGCACTTTCTTCCAGAGCCGATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CAA 90 bp TGGAAGGAACTTCAGGCATTTGAGTTGCAGGTTAACCTGAGGAATTaGGTAAAGGTTTCAAGCCTTTGGCAAAGGCACTGGTTGCCAGAA +
Preference number: 2 (lower is better)
Translates to: WKELQAFELQVNLRN*VKVSSLWQRHWLPE
Trigger: TTCTGGCAACCAGTGCCTTTGCCAAAGGCTTGAAACCTTTACCAAATTCCTCAGGTTAACCTGCAACTCAAATGCCTGAAGTTCCTTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR TCA 90 bp AAGGAACTTCAGGCATTTGAGTTGCAGGTTAACCTGAGGAATTTGGTAAAGGTTGTTCCTGTGCCCCTTTaGTGCTTTTCTTCACAGCGC +
Preference number: 2 (lower is better)
Translates to: KELQAFELQVNLRNLVKVVPVPL*CFSSQR
Trigger: GCGCTGTGAAGAAAAGCATCAAAGGGGCACAGGAAC...AACCTTTACCAAATTCCTCAGGTTAACCTGCAACTCAAATGCCTGAAGTTCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR CCA 90 bp CATGTGCTTGCTGTAGGATTTGGGACATACAACCTTCTAAGAAGGAATGTCTACATCAGGCATGAGCCATaGTTAGGTGGCTCCAAGCAA +
Preference number: 2 (lower is better)
Translates to: HVLAVGFGTYNLLRRNVYIRHEP*LGGSKQ
Trigger: TTGCTTGGAGCCACCTAACCATGGCTCATGCCTGAT...GTAGACATTCCTTCTTAGAAGGTTGTATGTCCCAAATCCTACAGCAAGCACATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR CCA 90 bp AAGGAACTTCAGGCATTTGAGTTGCAGGTTAACCTGAGGAATTTGGTAAAGGTTATAAGGTCAAGTGGATaGGCTCTCTTCCCCAGCCTC +
Preference number: 2 (lower is better)
Translates to: KELQAFELQVNLRNLVKVIRSSG*ALFPSL
Trigger: GAGGCTGGGGAAGAGAGCCCATCCACTTGACCTTAT...AACCTTTACCAAATTCCTCAGGTTAACCTGCAACTCAAATGCCTGAAGTTCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR CCA 90 bp AAGGAACTTCAGGCATTTGAGTTGCAGGTTAACCTGAGGAATTTGGTAAAGGTTAGGAAGCTGAGGCTGTaGGAAGATAACCAACCCCAC +
Preference number: 2 (lower is better)
Translates to: KELQAFELQVNLRNLVKVRKLRL*EDNQPH
Trigger: GTGGGGTTGGTTATCTTCCCACAGCCTCAGCTTCCT...AACCTTTACCAAATTCCTCAGGTTAACCTGCAACTCAAATGCCTGAAGTTCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR CCA 90 bp CTTACATGTGCTTGCTGTAGGATTTGGGACATACAACCTTCTAAGAAGGAATGTATTCCCAGCTCCAGCTaGGTTTATCAGGTATCTGCC +
Preference number: 2 (lower is better)
Translates to: LTCACCRIWDIQPSKKECIPSSS*VYQVSA
Trigger: GGCAGATACCTGATAAACCCAGCTGGAGCTGGGAAT...ACATTCCTTCTTAGAAGGTTGTATGTCCCAAATCCTACAGCAAGCACATGTAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CAA 90 bp TACTATAGTAACACTCCCTGCTGGAAGGAACTTCAGGCATTTGAGTaGCAGGTTAACCTGAGGAATTTGGTAAAGGTTTCAAGCCTTTGG +
Preference number: 2 (lower is better)
Translates to: YYSNTPCWKELQAFE*QVNLRNLVKVSSLW
Trigger: CCAAAGGCTTGAAACCTTTACCAAATTCCTCAGGTTAACCTGCAACTCAAATGCCTGAAGTTCCTTCCAGCAGGGAGTGTTACTATAGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR CCA 90 bp CTAACGACTGATGGACTCAGGTTAATGTGGATAGCTCCCATGTCACCTTTCAAAAGTCTTGCTCATTCTTaGTCTTCTAACTTGGAAGCC +
Preference number: 2 (lower is better)
Translates to: LTTDGLRLMWIAPMSPFKSLAHS*SSNLEA
Trigger: GGCTTCCAAGTTAGAAGACCAAGAATGAGCAAGACT...TTTGAAAGGTGACATGGGAGCTATCCACATTAACCTGAGTCCATCAGTCGTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR CCA 90 bp CACATATTGCAAGCAAGAATGACCAAGATCAAATATTGGCTGAGTGGCCAGTCAACGCTAAGATTCACATaGGAACCTGGTCTCAGTCTT +
Preference number: 2 (lower is better)
Translates to: HILQARMTKIKYWLSGQSTLRFT*EPGLSL
Trigger: AAGACTGAGACCAGGTTCCCATGTGAATCTTAGCGT...TGACTGGCCACTCAGCCAATATTTGATCTTGGTCATTCTTGCTTGCAATATGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CAA 90 bp TCATACTTCTTTCTACCCTTTAGGGGTTTACCAGGATTGCATTCCTaGGATCACAGGATTCTATTTAGAGAGGCCTGGAAGGTACAATGT +
Preference number: 2 (lower is better)
Translates to: SYFFLPFRGLPGLHS*DHRILFREAWKVQC
Trigger: ACATTGTACCTTCCAGGCCTCTCTAAATAGAATCCTGTGATCCAAGGAATGCAATCCTGGTAAACCCCTAAAGGGTAGAAAGAAGTATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR CCA 90 bp CAAGATCAAATATTGGCTGAGTGGCCAGTCAGGATCTTTGGGGCAACTATACCTCAGGATTGCATTCCTTaGATCACAGGATTCTATTTA +
Preference number: 2 (lower is better)
Translates to: QDQILAEWPVRIFGATIPQDCIP*ITGFYL
Trigger: TAAATAGAATCCTGTGATCCAAGGAATGCAATCCTG...AGGTATAGTTGCCCCAAAGATCCTGACTGGCCACTCAGCCAATATTTGATCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CAA 90 bp ATAGGAATTTCATACTTCTTTCTACCCTTTAGGGGTTTACCAGGATaGCATTCCTTGGATCACAGGATTCTATTTAGAGAGGCCTGGAAG +
Preference number: 2 (lower is better)
Translates to: IGISYFFLPFRGLPG*HSLDHRILFREAWK
Trigger: CTTCCAGGCCTCTCTAAATAGAATCCTGTGATCCAAGGAATGCAATCCTGGTAAACCCCTAAAGGGTAGAAAGAAGTATGAAATTCCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR GCA 90 bp AAGTGCATGAGCACATGCATGTTATGTAAACATAACAGTTGGTCAGATCATGAGCTGAGGGACATGCCTTaGCTTATTAGCACAGCAATA +
Preference number: 2 (lower is better)
Translates to: KCMSTCMLCKHNSWSDHELRDMP*LISTAI
Trigger: TATTGCTGTGCTAATAAGGCAAGGCATGTCCCTCAG...CTCATGATCTGACCAACTGTTATGTTTACATAACATGCATGTGCTCATGCACTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR GCA 90 bp CACATATTGCAAGCAAGAATGACCAAGATCAAATATTGGCTGAGTGGCCAGTCAGATCTTACATGTGCTTaGTGTAGGATTTGGGACATA +
Preference number: 2 (lower is better)
Translates to: HILQARMTKIKYWLSGQSDLTCA*CRIWDI
Trigger: TATGTCCCAAATCCTACAGCAAGCACATGTAAGATC...TGACTGGCCACTCAGCCAATATTTGATCTTGGTCATTCTTGCTTGCAATATGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR CCA 90 bp TACATCGGCTCTGGAAGAAAGTGCATGAGCACATGCATGTTATGTAAACATAACGCCTCTCATTTCCCATaGGAAGGTTATAGGAATTTC +
Preference number: 2 (lower is better)
Translates to: YIGSGRKCMSTCMLCKHNASHFP*EGYRNF
Trigger: GAAATTCCTATAACCTTCCCATGGGAAATGAGAGGC...GTTATGTTTACATAACATGCATGTGCTCATGCACTTTCTTCCAGAGCCGATGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR GCA 90 bp CTTACATGTGCTTGCTGTAGGATTTGGGACATACAACCTTCTAAGAAGGAATGTGGTTTATCAGGTATCTaGCATTTTCTTATGTCTCCC +
Preference number: 2 (lower is better)
Translates to: LTCACCRIWDIQPSKKECGLSGI*HFLMSP
Trigger: GGGAGACATAAGAAAATGGCAGATACCTGATAAACC...ACATTCCTTCTTAGAAGGTTGTATGTCCCAAATCCTACAGCAAGCACATGTAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR CCA 90 bp TACATCGGCTCTGGAAGAAAGTGCATGAGCACATGCATGTTATGTAAACATAACTGGGGCAACTATACCTaGATGTACATAGTTTTTCTT +
Preference number: 2 (lower is better)
Translates to: YIGSGRKCMSTCMLCKHNWGNYT*MYIVFL
Trigger: AAGAAAAACTATGTACATCCAGGTATAGTTGCCCCA...GTTATGTTTACATAACATGCATGTGCTCATGCACTTTCTTCCAGAGCCGATGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CCA 72 bp CAGCCTCTGACTGGGGAGCCTCACACCAGCCAGCTTTaGCTTCCACCTCCTCAGTCTCAGAGCGTAACCAGC +
Preference number: 3 (lower is better)
Translates to: QPLTGEPHTSQL*LPPPQSQSVTS
Trigger: GCTGGTTACGCTCTGAGACTGAGGAGGTGGAAGCCAAAGCTGGCTGGTGTGAGGCTCCCCAGTCAGAGGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR GCA 72 bp CACTGGTTGCCAGAACCCAGCCAGGCAAGCTGGCCCTaGACCACTCAGCTCAGGGTTTTGAGGTTCTCTGGT +
Preference number: 3 (lower is better)
Translates to: HWLPEPSQASWP*TTQLRVLRFSG
Trigger: ACCAGAGAACCTCAAAACCCTGAGCTGAGTGGTGCAGGGCCAGCTTGCCTGGCTGGGTTCTGGCAACCAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR CCA 72 bp GACATCCGGTCACCTTCGAACCAGAGTAGGGCCAACTaGCAGCAAGGGTGGGGTGGTGTTGGATCAGGCATG +
Preference number: 3 (lower is better)
Translates to: DIRSPSNQSRAN*QQGWGGVGSGM
Trigger: CATGCCTGATCCAACACCACCCCACCCTTGCTGCCAGTTGGCCCTACTCTGGTTCGAAGGTGACCGGATGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CCA 72 bp CAAAGGCACTGGTTGCCAGAACCCAGCCAGGCAAGCTaGCCCTGCACCACTCAGCTCAGGGTTTTGAGGTTC +
Preference number: 3 (lower is better)
Translates to: QRHWLPEPSQAS*PCTTQLRVLRF
Trigger: GAACCTCAAAACCCTGAGCTGAGTGGTGCAGGGCCAGCTTGCCTGGCTGGGTTCTGGCAACCAGTGCCTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR CCA 72 bp TCCCTGGCTGGGTCATCCATAGGCTATAAGGTCAAGTaGATGGGCTCTCTTCCCCAGCCTCTGACTGGGGAG +
Preference number: 3 (lower is better)
Translates to: SLAGSSIGYKVK*MGSLPQPLTGE
Trigger: CTCCCCAGTCAGAGGCTGGGGAAGAGAGCCCATCCACTTGACCTTATAGCCTATGGATGACCCAGCCAGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR CCA 72 bp TTACAGTCTGCCAAGCCCCCTCACCTGCCCGTTCCATaGCACAAGGAGACCAATTCTGGGGTCTCCGAAAGG +
Preference number: 3 (lower is better)
Translates to: LQSAKPPHLPVP*HKETNSGVSER
Trigger: CCTTTCGGAGACCCCAGAATTGGTCTCCTTGTGCCATGGAACGGGCAGGTGAGGGGGCTTGGCAGACTGTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR TCA 72 bp CAGTCAGCCTGGGTCTTCCGTCAGCGTCTAGAGCCATaGGGAAAGAGGAACTCACTAGGAACTCTGGGGAGC +
Preference number: 3 (lower is better)
Translates to: QSAWVFRQRLEP*GKRNSLGTLGS
Trigger: GCTCCCCAGAGTTCCTAGTGAGTTCCTCTTTCCTCATGGCTCTAGACGCTGACGGAAGACCCAGGCTGACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR TCA 72 bp AGGCAAGCTGGCCCTGCACCACTCAGCTCAGGGTTTTaGGGTTCTCTGGTGCTGCGAACTCACACTTCCTAC +
Preference number: 3 (lower is better)
Translates to: RQAGPAPLSSGF*GSLVLRTHTSY
Trigger: GTAGGAAGTGTGAGTTCGCAGCACCAGAGAACCTCAAAACCCTGAGCTGAGTGGTGCAGGGCCAGCTTGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR CCA 72 bp GCCCTGCACCACTCAGCTCAGGGTTTTGAGGTTCTCTaGTGCTGCGAACTCACACTTCCTACTCCGTGGATC +
Preference number: 3 (lower is better)
Translates to: ALHHSAQGFEVL*CCELTLPTPWI
Trigger: GATCCACGGAGTAGGAAGTGTGAGTTCGCAGCACCAGAGAACCTCAAAACCCTGAGCTGAGTGGTGCAGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR TCA 72 bp CCCACTGCCAACCAGAGTCAGACCTCAGTTCTGAACTaGGGCAAAGGTTCAGTCAGCCTGGGTCTTCCGTCA +
Preference number: 3 (lower is better)
Translates to: PTANQSQTSVLN*GKGSVSLGLPS
Trigger: TGACGGAAGACCCAGGCTGACTGAACCTTTGCCTCAGTTCAGAACTGAGGTCTGACTCTGGTTGGCAGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR TCA 72 bp CCAACCCCACTGCCAACCAGAGTCAGACCTCAGTTCTaGACTGAGGCAAAGGTTCAGTCAGCCTGGGTCTTC +
Preference number: 3 (lower is better)
Translates to: PTPLPTRVRPQF*TEAKVQSAWVF
Trigger: GAAGACCCAGGCTGACTGAACCTTTGCCTCAGTTCAGAACTGAGGTCTGACTCTGGTTGGCAGTGGGGTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR TCA 72 bp AGAAACCTTCCTTCCCCTGGGAGACAAATCCAGAGCTaGTGCCAGTCCCTGGCTGGGTCATCCATAGGCTAT +
Preference number: 3 (lower is better)
Translates to: RNLPSPGRQIQS*CQSLAGSSIGY
Trigger: ATAGCCTATGGATGACCCAGCCAGGGACTGGCATCAGCTCTGGATTTGTCTCCCAGGGGAAGGAAGGTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR GCA 72 bp AGGAAGCTGAGGCTGTGGGAAGATAACCAACCCCACTaGCAACCAGAGTCAGACCTCAGTTCTGAACTGAGG +
Preference number: 3 (lower is better)
Translates to: RKLRLWEDNQPH*QPESDLSSELR
Trigger: CCTCAGTTCAGAACTGAGGTCTGACTCTGGTTGGCAGTGGGGTTGGTTATCTTCCCACAGCCTCAGCTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR TCA 72 bp ACCTGCAGGGGTGGAGCTAGGAACAGGGACAGGAAGTaGTCTGAAACCTATCCACACTCCCAAATCCCACAA +
Preference number: 3 (lower is better)
Translates to: TCRGGARNRDRK*SETYPHSQIPQ
Trigger: TTGTGGGATTTGGGAGTGTGGATAGGTTTCAGATCACTTCCTGTCCCTGTTCCTAGCTCCACCCCTGCAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR TCA 72 bp TCTCTTTGTAAGCAGGGGGAAGTGCAACTAAAGGCTTaGGGAGTTCCGAGGCCTCTCATTTCCCATGGGAAG +
Preference number: 3 (lower is better)
Translates to: SLCKQGEVQLKA*GVPRPLISHGK
Trigger: CTTCCCATGGGAAATGAGAGGCCTCGGAACTCCTCAAGCCTTTAGTTGCACTTCCCCCTGCTTACAAAGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR GCA 72 bp AATGTAGGTCCCACTGAGCACTTTGGAGCAGTTGTCTaGAAAGAGAGTGACATCCGGTCACCTTCGAACCAG +
Preference number: 3 (lower is better)
Translates to: NVGPTEHFGAVV*KESDIRSPSNQ
Trigger: CTGGTTCGAAGGTGACCGGATGTCACTCTCTTTGCAGACAACTGCTCCAAAGTGCTCAGTGGGACCTACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR TCA 72 bp TTCCAGTACCATGGTTCTAGAGTTCCTGTGCCCCTTTaGTGCTTTTCTTCACAGCGCGAGAGGCTTACAGTC +
Preference number: 3 (lower is better)
Translates to: FQYHGSRVPVPL*CFSSQRERLTV
Trigger: GACTGTAAGCCTCTCGCGCTGTGAAGAAAAGCATCAAAGGGGCACAGGAACTCTAGAACCATGGTACTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR GCA 72 bp ATTTTAGCCAGACAGGTCTGCACTCAGTTGCTGCCCTaGAGCTCCCCGGTTCTAGAACACATGTACAATCTA +
Preference number: 3 (lower is better)
Translates to: ILARQVCTQLLP*SSPVLEHMYNL
Trigger: TAGATTGTACATGTGTTCTAGAACCGGGGAGCTGCAGGGCAGCAACTGAGTGCAGACCTGTCTGGCTAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CCA 72 bp TCAGGCAGGCCTAACAAGAGCACGCTAAGATTCACATaGGAACCTGGTCTCAGTCTTGCTCATTCTTGGTCT +
Preference number: 3 (lower is better)
Translates to: SGRPNKSTLRFT*EPGLSLAHSWS
Trigger: AGACCAAGAATGAGCAAGACTGAGACCAGGTTCCCATGTGAATCTTAGCGTGCTCTTGTTAGGCCTGCCTGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CCA 72 bp GTTAACCTGAGGAATTTGGTAAAGGTTTCAAGCCTTTaGCAAAGGCACTGGTTGCCAGAACCCAGCCAGGCA +
Preference number: 3 (lower is better)
Translates to: VNLRNLVKVSSL*QRHWLPEPSQA
Trigger: TGCCTGGCTGGGTTCTGGCAACCAGTGCCTTTGCCAAAGGCTTGAAACCTTTACCAAATTCCTCAGGTTAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR CAA 90 bp CAAGATCAAATATTGGCTGAGTGGCCAGTCAGGATCTTTGGGGCAACTATACCTGTCCCACTGAGCACTTaGGAGCAGTTGTCTGCAAAG +
Preference number: 3 (lower is better)
Translates to: QDQILAEWPVRIFGATIPVPLST*EQLSAK
Trigger: CTTTGCAGACAACTGCTCCAAAGTGCTCAGTGGGAC...AGGTATAGTTGCCCCAAAGATCCTGACTGGCCACTCAGCCAATATTTGATCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR CAA 90 bp AATGACCAAGATCAAATATTGGCTGAGTGGCCAGTCAGGATCTTTGGGGCAACTCCCCATGTAGAAACCTaGGTGGAAGGGAAAGACAGA +
Preference number: 3 (lower is better)
Translates to: NDQDQILAEWPVRIFGATPHVET*VEGKDR
Trigger: TCTGTCTTTCCCTTCCACCAAGGTTTCTACATGGGG...AGTTGCCCCAAAGATCCTGACTGGCCACTCAGCCAATATTTGATCTTGGTCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR CAA 90 bp AACCTCCTCCCTGGGTCAAGAGCAAATTATGTTCTCTTTGTAAGCAGGGGGAAGTTCTTATGTCTCCCATaGGTTTCTCCACTGCTCCTT +
Preference number: 3 (lower is better)
Translates to: NLLPGSRANYVLFVSRGKFLCLP*VSPLLL
Trigger: AAGGAGCAGTGGAGAAACCAATGGGAGACATAAGAA...CTTCCCCCTGCTTACAAAGAGAACATAATTTGCTCTTGACCCAGGGAGGAGGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR TCA 72 bp AATGTCACCAAGAACCCTGAGACACAGTCTAACGACTaGTGGACTCAGGTTAATGTGGATAGCTCCCATGTC +
Preference number: 3 (lower is better)
Translates to: NVTKNPETQSND*WTQVNVDSSHV
Trigger: GACATGGGAGCTATCCACATTAACCTGAGTCCATCAGTCGTTAGACTGTGTCTCAGGGTTCTTGGTGACATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR GCA 72 bp CTCCATTCCCAGCTCCAGCTGGGTTTATCAGGTATCTaGCATTTTCTTATGTCTCCCATTGGTTTCTCCACT +
Preference number: 3 (lower is better)
Translates to: LHSQLQLGLSGI*HFLMSPIGFST
Trigger: AGTGGAGAAACCAATGGGAGACATAAGAAAATGGCAGATACCTGATAAACCCAGCTGGAGCTGGGAATGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CCA 72 bp AGACACAGTCTAACGACTGATGGACTCAGGTTAATGTaGATAGCTCCCATGTCACCTTTCAAATCAGCCCTC +
Preference number: 3 (lower is better)
Translates to: RHSLTTDGLRLM*IAPMSPFKSAL
Trigger: GAGGGCTGATTTGAAAGGTGACATGGGAGCTATCCACATTAACCTGAGTCCATCAGTCGTTAGACTGTGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR TCA 72 bp CATAACACCTCCCACCTCCATTGCTGCGCTTGCCTATaGCATCATATCATATCAGCATCCATCTGTAACCAA +
Preference number: 3 (lower is better)
Translates to: HNTSHLHCCACL*HHIISASICNQ
Trigger: TTGGTTACAGATGGATGCTGATATGATATGATGTCATAGGCAAGCGCAGCAATGGAGGTGGGAGGTGTTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CCA 72 bp TTCTACCCTTTAGGGGTTTACCAGGATTGCATTCCTTaGATCACAGGATTCTATTTAGAGAGGCCTGGAAGG +
Preference number: 3 (lower is better)
Translates to: FYPLGVYQDCIP*ITGFYLERPGR
Trigger: CCTTCCAGGCCTCTCTAAATAGAATCCTGTGATCCAAGGAATGCAATCCTGGTAAACCCCTAAAGGGTAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CCA 72 bp AAAGGCTTGAGGAGTTCCGAGGCCTCTCATTTCCCATaGGAAGGTTATAGGAATTTCATACTTCTTTCTACC +
Preference number: 3 (lower is better)
Translates to: KGLRSSEASHFP*EGYRNFILLST
Trigger: GGTAGAAAGAAGTATGAAATTCCTATAACCTTCCCATGGGAAATGAGAGGCCTCGGAACTCCTCAAGCCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CCA 72 bp CACATATTGCAAGCAAGAATGACCAAGATCAAATATTaGCTGAGTGGCCAGTCAGGATCTTTGGGGCAACTA +
Preference number: 3 (lower is better)
Translates to: HILQARMTKIKY*LSGQSGSLGQL
Trigger: TAGTTGCCCCAAAGATCCTGACTGGCCACTCAGCCAATATTTGATCTTGGTCATTCTTGCTTGCAATATGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CCA 72 bp TCCACACTCCCAAATCCCACAACTCCAGATTCAATATaGGTGAACACCAGCAAGAATTTTGTTCTGCAAAGC +
Preference number: 3 (lower is better)
Translates to: STLPNPTTPDSI*VNTSKNFVLQS
Trigger: GCTTTGCAGAACAAAATTCTTGCTGGTGTTCACCCATATTGAATCTGGAGTTGTGGGATTTGGGAGTGTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR TCA 72 bp CACTCCCAAATCCCACAACTCCAGATTCAATATGGGTaGACACCAGCAAGAATTTTGTTCTGCAAAGCATGT +
Preference number: 3 (lower is better)
Translates to: HSQIPQLQIQYG*TPARILFCKAC
Trigger: ACATGCTTTGCAGAACAAAATTCTTGCTGGTGTTCACCCATATTGAATCTGGAGTTGTGGGATTTGGGAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR-3UTR CAA 90 bp AATGACCAAGATCAAATATTGGCTGAGTGGCCAGTCAGGATCTTTGGGGCAACTGTGAAACTGTGGGATTaGAGAATTATCTGCAAAGTA +
Preference number: 3 (lower is better)
Translates to: NDQDQILAEWPVRIFGATVKLWD*RIICKV
Trigger: TACTTTGCAGATAATTCTCAAATCCCACAGTTTCAC...AGTTGCCCCAAAGATCCTGACTGGCCACTCAGCCAATATTTGATCTTGGTCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR GCA 72 bp CATACTTCTTTCTACCCTTTAGGGGTTTACCAGGATTaGATTCCTTGGATCACAGGATTCTATTTAGAGAGG +
Preference number: 3 (lower is better)
Translates to: HTSFYPLGVYQD*IPWITGFYLER
Trigger: CCTCTCTAAATAGAATCCTGTGATCCAAGGAATGCAATCCTGGTAAACCCCTAAAGGGTAGAAAGAAGTATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR GCA 72 bp ACATACATCGGCTCTGGAAGAAAGTGCATGAGCACATaGATGTTATGTAAACATAACAGTTGGTCAGATCAT +
Preference number: 3 (lower is better)
Translates to: TYIGSGRKCMST*MLCKHNSWSDH
Trigger: ATGATCTGACCAACTGTTATGTTTACATAACATGCATGTGCTCATGCACTTTCTTCCAGAGCCGATGTATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR-3UTR CAA 90 bp ATAACAGTTGGTCAGATCATGAGAACAGTAGTGAATAACACATATTGCAAGCAAAACCTGGTCTCAGTCTaGCTCATTCTTGGTCTTCTA +
Preference number: 3 (lower is better)
Translates to: ITVGQIMRTVVNNTYCKQNLVSV*LILGLL
Trigger: TAGAAGACCAAGAATGAGCAAGACTGAGACCAGGTT...TTGCTTGCAATATGTGTTATTCACTACTGTTCTCATGATCTGACCAACTGTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp GAGTCCCTCCACCTCTTGGGTCAAGGACCTGCAGGGGTGGAGCTAGGAACAGGGGCAGCCCCCACAGCGTaGCCTCCAGCCTCTGCACCA +
Preference number: 4 (lower is better)
Translates to: ESLHLLGQGPAGVELGTGAAPTA*PPASAP
Trigger: TGGTGCAGAGGCTGGAGGGCACGCTGTGGGGGCTGC...CCCTGTTCCTAGCTCCACCCCTGCAGGTCCTTGACCCAAGAGGTGGAGGGACTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR GCA 90 bp GGGGAGCCTCACACCAGCCAGCTTTGGCTTCCACCTCCTCAGTCTCAGAGCGTATCAGTCTGTGCCGCCTaGGCGTGCAGCCCCCACAGC +
Preference number: 4 (lower is better)
Translates to: GEPHTSQLWLPPPQSQSVSVCAA*ACSPHS
Trigger: GCTGTGGGGGCTGCACGCGCAGGCGGCACAGACTGA...TACGCTCTGAGACTGAGGAGGTGGAAGCCAAAGCTGGCTGGTGTGAGGCTCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR CCA 90 bp GAGTCCCTCCACCTCTTGGGTCAAGGACCTGCAGGGGTGGAGCTAGGAACAGGGGGGACCAGGCAGTCCTaGGTCACCTCTCTCTCCTGG +
Preference number: 4 (lower is better)
Translates to: ESLHLLGQGPAGVELGTGGTRQS*VTSLSW
Trigger: CCAGGAGAGAGAGGTGACCCAGGACTGCCTGGTCCC...CCCTGTTCCTAGCTCCACCCCTGCAGGTCCTTGACCCAAGAGGTGGAGGGACTC
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR GCA 90 bp GGGGAGCCTCACACCAGCCAGCTTTGGCTTCCACCTCCTCAGTCTCAGAGCGTAAGCCCCAGGACTGCATaGTTCAGCGCTGAGAGGGAG +
Preference number: 4 (lower is better)
Translates to: GEPHTSQLWLPPPQSQSVSPRTA*FSAERE
Trigger: CTCCCTCTCAGCGCTGAAGCATGCAGTCCTGGGGCT...TACGCTCTGAGACTGAGGAGGTGGAAGCCAAAGCTGGCTGGTGTGAGGCTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR GCA 90 bp CCAGAGTCAGACCTCAGTTCTGAACTGAGGCAAAGGTTCAGTCAGCCTGGGTCTGTGCCCTCCAGCCTCTaGACCAAGCCGGCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: PESDLSSELRQRFSQPGSVPSSL*TKPARA
Trigger: GGCCCTGGCCGGCTTGGTGCAGAGGCTGGAGGGCAC...AGACCCAGGCTGACTGAACCTTTGCCTCAGTTCAGAACTGAGGTCTGACTCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR GCA 90 bp GAGTCCCTCCACCTCTTGGGTCAAGGACCTGCAGGGGTGGAGCTAGGAACAGGGCATACGGCGAGTGTCTaGGCTGGCATTGCTCACCAG +
Preference number: 4 (lower is better)
Translates to: ESLHLLGQGPAGVELGTGHTASV*AGIAHQ
Trigger: CTGGTGAGCAATGCCAGCGCAGACACTCGCCGTATG...CCCTGTTCCTAGCTCCACCCCTGCAGGTCCTTGACCCAAGAGGTGGAGGGACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR CCA 90 bp CAGCCAGGCAAGCTGGCCCTGCACCACTCAGCTCAGGGTTTTGAGGTTCTCTGGCGCCTTCAAGTCATCTaGGGAGCTTCGAGGCCGGGA +
Preference number: 4 (lower is better)
Translates to: QPGKLALHHSAQGFEVLWRLQVI*GASRPG
Trigger: TCCCGGCCTCGAAGCTCCCCAGATGACTTGAAGGCG...CCAGAGAACCTCAAAACCCTGAGCTGAGTGGTGCAGGGCCAGCTTGCCTGGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR CAA 72 bp CCAGCCTCTGACTGGGGAGCCTCACACCAGCCAGCTTaGGCTTCCACCTCCTCAGTCTCAGAGCGTAACCAG +
Preference number: 4 (lower is better)
Translates to: PASDWGASHQPA*ASTSSVSERNQ
Trigger: CTGGTTACGCTCTGAGACTGAGGAGGTGGAAGCCAAAGCTGGCTGGTGTGAGGCTCCCCAGTCAGAGGCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR TCA 90 bp GAGTCCCTCCACCTCTTGGGTCAAGGACCTGCAGGGGTGGAGCTAGGAACAGGGTTCTGCAGCGCATCCTaGACCTTCCACACCTGCTCT +
Preference number: 4 (lower is better)
Translates to: ESLHLLGQGPAGVELGTGFCSAS*TFHTCS
Trigger: AGAGCAGGTGTGGAAGGTTCAGGATGCGCTGCAGAA...CCCTGTTCCTAGCTCCACCCCTGCAGGTCCTTGACCCAAGAGGTGGAGGGACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR GCA 90 bp CCAGGCAAGCTGGCCCTGCACCACTCAGCTCAGGGTTTTGAGGTTCTCTGGTGCTCTGTCAGGTCTGCCTaGAATGGAGCCTGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: PGKLALHHSAQGFEVLWCSVRSA*NGACSS
Trigger: GCTGCTGCAGGCTCCATTGCAGGCAGACCTGACAGA...GCACCAGAGAACCTCAAAACCCTGAGCTGAGTGGTGCAGGGCCAGCTTGCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR GCA 90 bp ACGCAATTTAGGAAGCTGAGGCTGTGGGAAGATAACCAACCCCACTGCCAACCACGCCTGCTCAGTCTGTaGCGCCTGCGCGTGCAGCCC +
Preference number: 4 (lower is better)
Translates to: TQFRKLRLWEDNQPHCQPRLLSL*RLRVQP
Trigger: GGGCTGCACGCGCAGGCGGCACAGACTGAGCAGGCG...TGGTTGGCAGTGGGGTTGGTTATCTTCCCACAGCCTCAGCTTCCTAAATTGCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR CCA 90 bp GGGGAGCCTCACACCAGCCAGCTTTGGCTTCCACCTCCTCAGTCTCAGAGCGTAACCTTTGGGTCCCGGTaGCCCTTTGGCAAGGGTGAT +
Preference number: 4 (lower is better)
Translates to: GEPHTSQLWLPPPQSQSVTFGSR*PFGKGD
Trigger: ATCACCCTTGCCAAAGGGCCACCGGGACCCAAAGGT...TACGCTCTGAGACTGAGGAGGTGGAAGCCAAAGCTGGCTGGTGTGAGGCTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR CCA 90 bp ACCCAGCCAGGCAAGCTGGCCCTGCACCACTCAGCTCAGGGTTTTGAGGTTCTCTTCCTTGGTCACCTTTaGGTCCCGGTGGCCCTTTGG +
Preference number: 4 (lower is better)
Translates to: TQPGKLALHHSAQGFEVLFLGHL*VPVALW
Trigger: CCAAAGGGCCACCGGGACCCAAAGGTGACCAAGGAA...GAGAACCTCAAAACCCTGAGCTGAGTGGTGCAGGGCCAGCTTGCCTGGCTGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR CAA 72 bp CCATCTCAGCAGGTAGCCCTAGAGTCCCTCCACCTCTaGGGTCAAGGACCTGCAGGGGTGGAGCTAGGAACA +
Preference number: 4 (lower is better)
Translates to: PSQQVALESLHL*GQGPAGVELGT
Trigger: TGTTCCTAGCTCCACCCCTGCAGGTCCTTGACCCAAGAGGTGGAGGGACTCTAGGGCTACCTGCTGAGATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR GCA 90 bp TCAGCGTCTAGAGCCATGAGGAAAGAGGAACTCACTAGGAACTCTGGGGAGCCCGCCTGCAATGGAGCCTaGAGCAGCCGCAGCTGCATG +
Preference number: 4 (lower is better)
Translates to: SASRAMRKEELTRNSGEPACNGA*SSRSCM
Trigger: CATGCAGCTGCGGCTGCTGCAGGCTCCATTGCAGGC...GGGCTCCCCAGAGTTCCTAGTGAGTTCCTCTTTCCTCATGGCTCTAGACGCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR CCA 90 bp AGTAGGGCCAACTGGCAGCAAGGGTGGGGTGGTGTTGGATCAGGCATGAGCCATGTCACCTCTCTCTCCTaGCAGACCTCGAGATCCAGG +
Preference number: 4 (lower is better)
Translates to: SRANWQQGWGGVGSGMSHVTSLS*QTSRSR
Trigger: CCTGGATCTCGAGGTCTGCCAGGAGAGAGAGGTGAC...ATGGCTCATGCCTGATCCAACACCACCCCACCCTTGCTGCCAGTTGGCCCTACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp GAGTCCCTCCACCTCTTGGGTCAAGGACCTGCAGGGGTGGAGCTAGGAACAGGGGCTTGGACAGGCTCCTaGCATCAAAGGGTTCTTCAA +
Preference number: 4 (lower is better)
Translates to: ESLHLLGQGPAGVELGTGAWTGS*HQRVLQ
Trigger: TTGAAGAACCCTTTGATGGCAGGAGCCTGTCCAAGC...CCCTGTTCCTAGCTCCACCCCTGCAGGTCCTTGACCCAAGAGGTGGAGGGACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR GCA 90 bp AACCTCCTCCCTGGGTCAAGAGCAAATTATGTTCTCTTTGTAAGCAGGGGGAAGGTGCCCTCCAGCCTCTaGACCAAGCCGGCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: NLLPGSRANYVLFVSRGKVPSSL*TKPARA
Trigger: GGCCCTGGCCGGCTTGGTGCAGAGGCTGGAGGGCAC...CTTCCCCCTGCTTACAAAGAGAACATAATTTGCTCTTGACCCAGGGAGGAGGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp AATGACCAAGATCAAATATTGGCTGAGTGGCCAGTCAGGATCTTTGGGGCAACTTGTGCCGCCTGCGCGTaGAGCCCCCACAGCGTGCCC +
Preference number: 4 (lower is better)
Translates to: NDQDQILAEWPVRIFGATCAACA*SPHSVP
Trigger: GGGCACGCTGTGGGGGCTGCACGCGCAGGCGGCACA...AGTTGCCCCAAAGATCCTGACTGGCCACTCAGCCAATATTTGATCTTGGTCATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp CCTCCATTCCCAGCTCCAGCTGGGTTTATCAGGTATCTGCCATTTTCTTATGTCCGCCTGCTCAGTCTGTaGCGCCTGCGCGTGCAGCCC +
Preference number: 4 (lower is better)
Translates to: PPFPAPAGFIRYLPFSYVRLLSL*RLRVQP
Trigger: GGGCTGCACGCGCAGGCGGCACAGACTGAGCAGGCG...GACATAAGAAAATGGCAGATACCTGATAAACCCAGCTGGAGCTGGGAATGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp AAACCTATCCACACTCCCAAATCCCACAACTCCAGATTCAATATGGGTGAACACTGTGCCGCCTGCGCGTaGAGCCCCCACAGCGTGCCC +
Preference number: 4 (lower is better)
Translates to: KPIHTPKSHNSRFNMGEHCAACA*SPHSVP
Trigger: GGGCACGCTGTGGGGGCTGCACGCGCAGGCGGCACA...GTGTTCACCCATATTGAATCTGGAGTTGTGGGATTTGGGAGTGTGGATAGGTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR GCA 90 bp GGAACAGGGACAGGAAGTGATCTGAAACCTATCCACACTCCCAAATCCCACAACAGGCCCGCGTGGCGCTaGAGCAGTAGCTGGCTTCGA +
Preference number: 4 (lower is better)
Translates to: GTGTGSDLKPIHTPKSHNRPAWR*SSSWLR
Trigger: TCGAAGCCAGCTACTGCTGCAGCGCCACGCGGGCCT...GTTGTGGGATTTGGGAGTGTGGATAGGTTTCAGATCACTTCCTGTCCCTGTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR CCA 90 bp CAGCCAGGCAAGCTGGCCCTGCACCACTCAGCTCAGGGTTTTGAGGTTCTCTGGTTCCCTTCATTTCCTTaGTCACCTTTGGGTCCCGGT +
Preference number: 4 (lower is better)
Translates to: QPGKLALHHSAQGFEVLWFPSFP*SPLGPG
Trigger: ACCGGGACCCAAAGGTGACCAAGGAAATGAAGGGAA...CCAGAGAACCTCAAAACCCTGAGCTGAGTGGTGCAGGGCCAGCTTGCCTGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
3UTR CAA 72 bp CAGGCAAGCTGGCCCTGCACCACTCAGCTCAGGGTTTaGAGGTTCTCTGGTGCTGCGAACTCACACTTCCTA +
Preference number: 4 (lower is better)
Translates to: QASWPCTTQLRV*RFSGAANSHFL
Trigger: TAGGAAGTGTGAGTTCGCAGCACCAGAGAACCTCAAAACCCTGAGCTGAGTGGTGCAGGGCCAGCTTGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR TCA 90 bp GTTCACACTGACTGCAAGCATGGCCCCCAGGAGTTTTCCCTAATACCACACACTTGCATGCTTCAGCGCTaGGAGGGAGCCCAGCTGTGT +
Preference number: 4 (lower is better)
Translates to: VHTDCKHGPQEFSLIPHTCMLQR*EGAQLC
Trigger: ACACAGCTGGGCTCCCTCTCAGCGCTGAAGCATGCA...AGTGTGTGGTATTAGGGAAAACTCCTGGGGGCCATGCTTGCAGTCAGTGTGAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR CCA 90 bp CCAAGGAACCAGGGAATGACTAAGAAAGCCCCAGTCGTAGTAGGCACTGTGTCCGTCACCTCTCTCTCCTaGCAGACCTCGAGATCCAGG +
Preference number: 4 (lower is better)
Translates to: PRNQGMTKKAPVVVGTVSVTSLS*QTSRSR
Trigger: CCTGGATCTCGAGGTCTGCCAGGAGAGAGAGGTGAC...GGACACAGTGCCTACTACGACTGGGGCTTTCTTAGTCATTCCCTGGTTCCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR CCA 90 bp CAGAATGTAGGTCCCACTGAGCACTTTGGAGCAGTTGTCTGCAAAGAGAGTGACACCTCCTCAACCCCGTaGAAGCCCAGCATGCGGCAC +
Preference number: 4 (lower is better)
Translates to: QNVGPTEHFGAVVCKESDTSSTP*KPSMRH
Trigger: GTGCCGCATGCTGGGCTTCCACGGGGTTGAGGAGGT...GTCACTCTCTTTGCAGACAACTGCTCCAAAGTGCTCAGTGGGACCTACATTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp AACCTCCTCCCTGGGTCAAGAGCAAATTATGTTCTCTTTGTAAGCAGGGGGAAGTGCAGCAGCCGCAGCTaGATGTCCCGGAGGCTCTCA +
Preference number: 4 (lower is better)
Translates to: NLLPGSRANYVLFVSRGKCSSRS*MSRRLS
Trigger: TGAGAGCCTCCGGGACATGCAGCTGCGGCTGCTGCA...CTTCCCCCTGCTTACAAAGAGAACATAATTTGCTCTTGACCCAGGGAGGAGGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp TCCCTCCATTCCCAGCTCCAGCTGGGTTTATCAGGTATCTGCCATTTTCTTATGGCCTGCAATGGAGCCTaGAGCAGCCGCAGCTGCATG +
Preference number: 4 (lower is better)
Translates to: SLHSQLQLGLSGICHFLMACNGA*SSRSCM
Trigger: CATGCAGCTGCGGCTGCTGCAGGCTCCATTGCAGGC...CATAAGAAAATGGCAGATACCTGATAAACCCAGCTGGAGCTGGGAATGGAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp CCAGAGTCAGACCTCAGTTCTGAACTGAGGCAAAGGTTCAGTCAGCCTGGGTCTAGTGTGGCCAGCTCCTaGTTGAGCTGCATCTCCATG +
Preference number: 4 (lower is better)
Translates to: PESDLSSELRQRFSQPGSSVASS*LSCISM
Trigger: CATGGAGATGCAGCTCAAGCAGGAGCTGGCCACACT...AGACCCAGGCTGACTGAACCTTTGCCTCAGTTCAGAACTGAGGTCTGACTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR TCA 90 bp AATGACCAAGATCAAATATTGGCTGAGTGGCCAGTCAGGATCTTTGGGGCAACTCCTCGGTCACCACGTTaGGTGTGGCCAGCTCCTGCT +
Preference number: 4 (lower is better)
Translates to: NDQDQILAEWPVRIFGATPRSPR*VWPAPA
Trigger: AGCAGGAGCTGGCCACACTCAACGTGGTGACCGAGG...AGTTGCCCCAAAGATCCTGACTGGCCACTCAGCCAATATTTGATCTTGGTCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp CTAACGACTGATGGACTCAGGTTAATGTGGATAGCTCCCATGTCACCTTTCAAACGTGGAAGCCCAGCATaGGGCACACCACGTCCCCGT +
Preference number: 4 (lower is better)
Translates to: LTTDGLRLMWIAPMSPFKRGSPA*GTPRPR
Trigger: ACGGGGACGTGGTGTGCCGCATGCTGGGCTTCCACG...TTTGAAAGGTGACATGGGAGCTATCCACATTAACCTGAGTCCATCAGTCGTTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CCA 90 bp CCAAGGAACCAGGGAATGACTAAGAAAGCCCCAGTCGTAGTAGGCACTGTGTCCCACACAGGTTCAGCTTaGACAGGCTCCTGCCATCAA +
Preference number: 4 (lower is better)
Translates to: PRNQGMTKKAPVVVGTVSHTGSA*TGSCHQ
Trigger: TTGATGGCAGGAGCCTGTCCAAGCTGAACCTGTGTG...GGACACAGTGCCTACTACGACTGGGGCTTTCTTAGTCATTCCCTGGTTCCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR CCA 90 bp CCTCCATTCCCAGCTCCAGCTGGGTTTATCAGGTATCTGCCATTTTCTTATGTCGGCGAGTGTCTGCGCTaGCATTGCTCACCAGCACCT +
Preference number: 4 (lower is better)
Translates to: PPFPAPAGFIRYLPFSYVGECLR*HCSPAP
Trigger: AGGTGCTGGTGAGCAATGCCAGCGCAGACACTCGCC...GACATAAGAAAATGGCAGATACCTGATAAACCCAGCTGGAGCTGGGAATGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CCA 90 bp ACGCAATTTAGGAAGCTGAGGCTGTGGGAAGATAACCAACCCCACTGCCAACCAAAGTCCAGGGCTACCTaGCTTTCCCTCCTTCCCTTC +
Preference number: 4 (lower is better)
Translates to: TQFRKLRLWEDNQPHCQPKSRAT*LSLLPF
Trigger: GAAGGGAAGGAGGGAAAGCCAGGTAGCCCTGGACTT...TGGTTGGCAGTGGGGTTGGTTATCTTCCCACAGCCTCAGCTTCCTAAATTGCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR GCA 90 bp AACCTCCTCCCTGGGTCAAGAGCAAATTATGTTCTCTTTGTAAGCAGGGGGAAGCCAGCATCCTCAGCATaGCCACAGTTTGTCACCCCC +
Preference number: 4 (lower is better)
Translates to: NLLPGSRANYVLFVSRGKPASSA*PQFVTP
Trigger: GGGGGTGACAAACTGTGGGCATGCTGAGGATGCTGG...CTTCCCCCTGCTTACAAAGAGAACATAATTTGCTCTTGACCCAGGGAGGAGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CCA 90 bp TCCCTCCATTCCCAGCTCCAGCTGGGTTTATCAGGTATCTGCCATTTTCTTATGTTCCTTGGTCACCTTTaGGTCCCGGTGGCCCTTTGG +
Preference number: 4 (lower is better)
Translates to: SLHSQLQLGLSGICHFLMFLGHL*VPVALW
Trigger: CCAAAGGGCCACCGGGACCCAAAGGTGACCAAGGAA...CATAAGAAAATGGCAGATACCTGATAAACCCAGCTGGAGCTGGGAATGGAGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CCA 90 bp CATATTGCAAGCAAGAATGACCAAGATCAAATATTGGCTGAGTGGCCAGTCAGGCCCCAACGACGATCATaGAACACCTCCACCCGGCCC +
Preference number: 4 (lower is better)
Translates to: HIASKNDQDQILAEWPVRPQRRS*NTSTRP
Trigger: GGGCCGGGTGGAGGTGTTCCATGATCGTCGTTGGGG...CCTGACTGGCCACTCAGCCAATATTTGATCTTGGTCATTCTTGCTTGCAATATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp CTAACGACTGATGGACTCAGGTTAATGTGGATAGCTCCCATGTCACCTTTCAAAAGCCCCAGGACTGCATaGTTCAGCGCTGAGAGGGAG +
Preference number: 4 (lower is better)
Translates to: LTTDGLRLMWIAPMSPFKSPRTA*FSAERE
Trigger: CTCCCTCTCAGCGCTGAAGCATGCAGTCCTGGGGCT...TTTGAAAGGTGACATGGGAGCTATCCACATTAACCTGAGTCCATCAGTCGTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp AAGTGCATGAGCACATGCATGTTATGTAAACATAACAGTTGGTCAGATCATGAGGCAGCCCCCACAGCGTaGCCTCCAGCCTCTGCACCA +
Preference number: 4 (lower is better)
Translates to: KCMSTCMLCKHNSWSDHEAAPTA*PPASAP
Trigger: TGGTGCAGAGGCTGGAGGGCACGCTGTGGGGGCTGC...CTCATGATCTGACCAACTGTTATGTTTACATAACATGCATGTGCTCATGCACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp ATTTCCCATGGGAAGGTTATAGGAATTTCATACTTCTTTCTACCCTTTAGGGGTTCAGTCTGTGCCGCCTaGGCGTGCAGCCCCCACAGC +
Preference number: 4 (lower is better)
Translates to: ISHGKVIGISYFFLPFRGSVCAA*ACSPHS
Trigger: GCTGTGGGGGCTGCACGCGCAGGCGGCACAGACTGA...ACCCCTAAAGGGTAGAAAGAAGTATGAAATTCCTATAACCTTCCCATGGGAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp TTCCCTCCATTCCCAGCTCCAGCTGGGTTTATCAGGTATCTGCCATTTTCTTATCATACGGCGAGTGTCTaGGCTGGCATTGCTCACCAG +
Preference number: 4 (lower is better)
Translates to: FPPFPAPAGFIRYLPFSYHTASV*AGIAHQ
Trigger: CTGGTGAGCAATGCCAGCGCAGACACTCGCCGTATG...ATAAGAAAATGGCAGATACCTGATAAACCCAGCTGGAGCTGGGAATGGAGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CCA 90 bp CTAACGACTGATGGACTCAGGTTAATGTGGATAGCTCCCATGTCACCTTTCAAACGCCTTCAAGTCATCTaGGGAGCTTCGAGGCCGGGA +
Preference number: 4 (lower is better)
Translates to: LTTDGLRLMWIAPMSPFKRLQVI*GASRPG
Trigger: TCCCGGCCTCGAAGCTCCCCAGATGACTTGAAGGCG...TTTGAAAGGTGACATGGGAGCTATCCACATTAACCTGAGTCCATCAGTCGTTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CCA 90 bp AAGTGCATGAGCACATGCATGTTATGTAAACATAACAGTTGGTCAGATCATGAGCACCCGGCCCTGGTGTaGGCCGGAGCCATTCACCAG +
Preference number: 4 (lower is better)
Translates to: KCMSTCMLCKHNSWSDHEHPALV*AGAIHQ
Trigger: CTGGTGAATGGCTCCGGCCCACACCAGGGCCGGGTG...CTCATGATCTGACCAACTGTTATGTTTACATAACATGCATGTGCTCATGCACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR TCA 90 bp CATATTGCAAGCAAGAATGACCAAGATCAAATATTGGCTGAGTGGCCAGTCAGGTCTCATTCAGCCGGTTaGCGTTCCGAGTCAGCGCCT +
Preference number: 4 (lower is better)
Translates to: HIASKNDQDQILAEWPVRSHSAG*RSESAP
Trigger: AGGCGCTGACTCGGAACGTCAACCGGCTGAATGAGA...CCTGACTGGCCACTCAGCCAATATTTGATCTTGGTCATTCTTGCTTGCAATATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR TCA 90 bp TGTATGAGCTCTGGGCTCCAGTCTGAATATAGTCTCCTTATGACAGTAAAGAAACCTCGGTCACCACGTTaGGTGTGGCCAGCTCCTGCT +
Preference number: 4 (lower is better)
Translates to: CMSSGLQSEYSLLMTVKKPRSPR*VWPAPA
Trigger: AGCAGGAGCTGGCCACACTCAACGTGGTGACCGAGG...TTTCTTTACTGTCATAAGGAGACTATATTCAGACTGGAGCCCAGAGCTCATACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR GCA 90 bp CTAACGACTGATGGACTCAGGTTAATGTGGATAGCTCCCATGTCACCTTTCAAATCTGTCAGGTCTGCCTaGAATGGAGCCTGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: LTTDGLRLMWIAPMSPFKSVRSA*NGACSS
Trigger: GCTGCTGCAGGCTCCATTGCAGGCAGACCTGACAGA...TTTGAAAGGTGACATGGGAGCTATCCACATTAACCTGAGTCCATCAGTCGTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp CCTCCATTCCCAGCTCCAGCTGGGTTTATCAGGTATCTGCCATTTTCTTATGTCGTAGCTGGCTTCGATTaGTTTCCACCTGCAGCTGGT +
Preference number: 4 (lower is better)
Translates to: PPFPAPAGFIRYLPFSYVVAGFD*FPPAAG
Trigger: ACCAGCTGCAGGTGGAAAGCAATCGAAGCCAGCTAC...GACATAAGAAAATGGCAGATACCTGATAAACCCAGCTGGAGCTGGGAATGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp CACATATTGCAAGCAAGAATGACCAAGATCAAATATTGGCTGAGTGGCCAGTCAGGTCCTGTAGCCACGTaGTGTGCAGGGCCACGTCAT +
Preference number: 4 (lower is better)
Translates to: HILQARMTKIKYWLSGQSGPVAT*CAGPRH
Trigger: ATGACGTGGCCCTGCACAGCACGTGGCTACAGGACC...TGACTGGCCACTCAGCCAATATTTGATCTTGGTCATTCTTGCTTGCAATATGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp AAACCTATCCACACTCCCAAATCCCACAACTCCAGATTCAATATGGGTGAACACTGTCTGCGCTGGCATTaGTCACCAGCACCTGCAGGT +
Preference number: 4 (lower is better)
Translates to: KPIHTPKSHNSRFNMGEHCLRWH*SPAPAG
Trigger: ACCTGCAGGTGCTGGTGAGCAATGCCAGCGCAGACA...GTGTTCACCCATATTGAATCTGGAGTTGTGGGATTTGGGAGTGTGGATAGGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR CCA 90 bp TCCCTCCATTCCCAGCTCCAGCTGGGTTTATCAGGTATCTGCCATTTTCTTATGCACACAGGTTCAGCTTaGACAGGCTCCTGCCATCAA +
Preference number: 4 (lower is better)
Translates to: SLHSQLQLGLSGICHFLMHTGSA*TGSCHQ
Trigger: TTGATGGCAGGAGCCTGTCCAAGCTGAACCTGTGTG...CATAAGAAAATGGCAGATACCTGATAAACCCAGCTGGAGCTGGGAATGGAGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CCA 90 bp GGAACAGGGACAGGAAGTGATCTGAAACCTATCCACACTCCCAAATCCCACAACTGTTCCTCAAGGCGATaGAGTGTTCCCAGTCCTTCA +
Preference number: 4 (lower is better)
Translates to: GTGTGSDLKPIHTPKSHNCSSRR*SVPSPS
Trigger: TGAAGGACTGGGAACACTCCATCGCCTTGAGGAACA...GTTGTGGGATTTGGGAGTGTGGATAGGTTTCAGATCACTTCCTGTCCCTGTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR GCA 90 bp TTAGCCTATCTTTTAAAATGTAACCATTATGACGTGCTGAGCAATGGGCAATGTAGGCCCGCGTGGCGCTaGAGCAGTAGCTGGCTTCGA +
Preference number: 4 (lower is better)
Translates to: LAYLLKCNHYDVLSNGQCRPAWR*SSSWLR
Trigger: TCGAAGCCAGCTACTGCTGCAGCGCCACGCGGGCCT...ACATTGCCCATTGCTCAGCACGTCATAATGGTTACATTTTAAAAGATAGGCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp TGTATGAGCTCTGGGCTCCAGTCTGAATATAGTCTCCTTATGACAGTAAAGAAAGGTCCTGTAGCCACGTaGTGTGCAGGGCCACGTCAT +
Preference number: 4 (lower is better)
Translates to: CMSSGLQSEYSLLMTVKKGPVAT*CAGPRH
Trigger: ATGACGTGGCCCTGCACAGCACGTGGCTACAGGACC...TTTCTTTACTGTCATAAGGAGACTATATTCAGACTGGAGCCCAGAGCTCATACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR GCA 90 bp CACATATTGCAAGCAAGAATGACCAAGATCAAATATTGGCTGAGTGGCCAGTCATGTCTGCGCTGGCATTaGTCACCAGCACCTGCAGGT +
Preference number: 4 (lower is better)
Translates to: HILQARMTKIKYWLSGQSCLRWH*SPAPAG
Trigger: ACCTGCAGGTGCTGGTGAGCAATGCCAGCGCAGACA...TGACTGGCCACTCAGCCAATATTTGATCTTGGTCATTCTTGCTTGCAATATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CCA 90 bp TCCCTCCATTCCCAGCTCCAGCTGGGTTTATCAGGTATCTGCCATTTTCTTATGTGTTCCTCAAGGCGATaGAGTGTTCCCAGTCCTTCA +
Preference number: 4 (lower is better)
Translates to: SLHSQLQLGLSGICHFLMCSSRR*SVPSPS
Trigger: TGAAGGACTGGGAACACTCCATCGCCTTGAGGAACA...CATAAGAAAATGGCAGATACCTGATAAACCCAGCTGGAGCTGGGAATGGAGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CCA 90 bp AAGTGCATGAGCACATGCATGTTATGTAAACATAACAGTTGGTCAGATCATGAGGGGACCAGGCAGTCCTaGGTCACCTCTCTCTCCTGG +
Preference number: 4 (lower is better)
Translates to: KCMSTCMLCKHNSWSDHEGTRQS*VTSLSW
Trigger: CCAGGAGAGAGAGGTGACCCAGGACTGCCTGGTCCC...CTCATGATCTGACCAACTGTTATGTTTACATAACATGCATGTGCTCATGCACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR TCA 90 bp GGAACAGGGACAGGAAGTGATCTGAAACCTATCCACACTCCCAAATCCCACAACGGGACACTGCTAAGATaGAGATACCCACAAGAATCA +
Preference number: 4 (lower is better)
Translates to: GTGTGSDLKPIHTPKSHNGTLLR*RYPQES
Trigger: TGATTCTTGTGGGTATCTTCATCTTAGCAGTGTCCC...GTTGTGGGATTTGGGAGTGTGGATAGGTTTCAGATCACTTCCTGTCCCTGTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR GCA 90 bp AAACCTATCCACACTCCCAAATCCCACAACTCCAGATTCAATATGGGTGAACACGTAGCTGGCTTCGATTaGTTTCCACCTGCAGCTGGT +
Preference number: 4 (lower is better)
Translates to: KPIHTPKSHNSRFNMGEHVAGFD*FPPAAG
Trigger: ACCAGCTGCAGGTGGAAAGCAATCGAAGCCAGCTAC...GTGTTCACCCATATTGAATCTGGAGTTGTGGGATTTGGGAGTGTGGATAGGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR GCA 90 bp CTTACATGTGCTTGCTGTAGGATTTGGGACATACAACCTTCTAAGAAGGAATGTTTGCTCACCAGCACCTaGAGGTCCTGTAGCCACGTG +
Preference number: 4 (lower is better)
Translates to: LTCACCRIWDIQPSKKECLLTST*RSCSHV
Trigger: CACGTGGCTACAGGACCTGCAGGTGCTGGTGAGCAA...ACATTCCTTCTTAGAAGGTTGTATGTCCCAAATCCTACAGCAAGCACATGTAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp AAGGAACTTCAGGCATTTGAGTTGCAGGTTAACCTGAGGAATTTGGTAAAGGTTTTGCTCACCAGCACCTaGAGGTCCTGTAGCCACGTG +
Preference number: 4 (lower is better)
Translates to: KELQAFELQVNLRNLVKVLLTST*RSCSHV
Trigger: CACGTGGCTACAGGACCTGCAGGTGCTGGTGAGCAA...AACCTTTACCAAATTCCTCAGGTTAACCTGCAACTCAAATGCCTGAAGTTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR TCA 90 bp TTAGCCTATCTTTTAAAATGTAACCATTATGACGTGCTGAGCAATGGGCAATGTTGCATGCTTCAGCGCTaGGAGGGAGCCCAGCTGTGT +
Preference number: 4 (lower is better)
Translates to: LAYLLKCNHYDVLSNGQCCMLQR*EGAQLC
Trigger: ACACAGCTGGGCTCCCTCTCAGCGCTGAAGCATGCA...ACATTGCCCATTGCTCAGCACGTCATAATGGTTACATTTTAAAAGATAGGCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR TCA 90 bp TACATCGGCTCTGGAAGAAAGTGCATGAGCACATGCATGTTATGTAAACATAACTTCTGCAGCGCATCCTaGACCTTCCACACCTGCTCT +
Preference number: 4 (lower is better)
Translates to: YIGSGRKCMSTCMLCKHNFCSAS*TFHTCS
Trigger: AGAGCAGGTGTGGAAGGTTCAGGATGCGCTGCAGAA...GTTATGTTTACATAACATGCATGTGCTCATGCACTTTCTTCCAGAGCCGATGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp GCGCTTGCCTATGACATCATATCATATCAGCATCCATCTGTAACCAAGAGACCAGCTTGGACAGGCTCCTaGCATCAAAGGGTTCTTCAA +
Preference number: 4 (lower is better)
Translates to: ALAYDIISYQHPSVTKRPAWTGS*HQRVLQ
Trigger: TTGAAGAACCCTTTGATGGCAGGAGCCTGTCCAAGC...TGGTCTCTTGGTTACAGATGGATGCTGATATGATATGATGTCATAGGCAAGCGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp CTTACATGTGCTTGCTGTAGGATTTGGGACATACAACCTTCTAAGAAGGAATGTAGTGTGGCCAGCTCCTaGTTGAGCTGCATCTCCATG +
Preference number: 4 (lower is better)
Translates to: LTCACCRIWDIQPSKKECSVASS*LSCISM
Trigger: CATGGAGATGCAGCTCAAGCAGGAGCTGGCCACACT...ACATTCCTTCTTAGAAGGTTGTATGTCCCAAATCCTACAGCAAGCACATGTAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CCA 90 bp ATTTCCCATGGGAAGGTTATAGGAATTTCATACTTCTTTCTACCCTTTAGGGGTACCTTTGGGTCCCGGTaGCCCTTTGGCAAGGGTGAT +
Preference number: 4 (lower is better)
Translates to: ISHGKVIGISYFFLPFRGTFGSR*PFGKGD
Trigger: ATCACCCTTGCCAAAGGGCCACCGGGACCCAAAGGT...ACCCCTAAAGGGTAGAAAGAAGTATGAAATTCCTATAACCTTCCCATGGGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CAA 72 bp GGAAAAGAGGGAAACAGAGTCATTAAGGGTTTCTACTaGCTGGGGAGGTGGATGGTGAAACTGTGGGATTTG +
Preference number: 4 (lower is better)
Translates to: GKEGNRVIKGFY*LGRWMVKLWDL
Trigger: CAAATCCCACAGTTTCACCATCCACCTCCCCAGCAAGTAGAAACCCTTAATGACTCTGTTTCCCTCTTTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR GCA 90 bp ATTTCCCATGGGAAGGTTATAGGAATTTCATACTTCTTTCTACCCTTTAGGGGTCGTCGTCACACACTGTaGCCCAACGACGATCATGGA +
Preference number: 4 (lower is better)
Translates to: ISHGKVIGISYFFLPFRGRRHTL*PNDDHG
Trigger: TCCATGATCGTCGTTGGGGCACAGTGTGTGACGACG...ACCCCTAAAGGGTAGAAAGAAGTATGAAATTCCTATAACCTTCCCATGGGAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CCA 90 bp AGGCCTCTCATTTCCCATGGGAAGGTTATAGGAATTTCATACTTCTTTCTACCCTTCCCTTCATTTCCTTaGTCACCTTTGGGTCCCGGT +
Preference number: 4 (lower is better)
Translates to: RPLISHGKVIGISYFFLPFPSFP*SPLGPG
Trigger: ACCGGGACCCAAAGGTGACCAAGGAAATGAAGGGAA...GGGTAGAAAGAAGTATGAAATTCCTATAACCTTCCCATGGGAAATGAGAGGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CCA 90 bp TTATGTCTGATCTTACATGTGCTTGCTGTAGGATTTGGGACATACAACCTTCTAAAGTCCAGGGCTACCTaGCTTTCCCTCCTTCCCTTC +
Preference number: 4 (lower is better)
Translates to: LCLILHVLAVGFGTYNLLKSRAT*LSLLPF
Trigger: GAAGGGAAGGAGGGAAAGCCAGGTAGCCCTGGACTT...TAGAAGGTTGTATGTCCCAAATCCTACAGCAAGCACATGTAAGATCAGACATAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CCA 90 bp CACATATTGCAAGCAAGAATGACCAAGATCAAATATTGGCTGAGTGGCCAGTCATTGGAGAACTGGCAGTaGAAGATGGAGCTCTCGGTT +
Preference number: 4 (lower is better)
Translates to: HILQARMTKIKYWLSGQSLENWQ*KMELSV
Trigger: AACCGAGAGCTCCATCTTCCACTGCCAGTTCTCCAA...TGACTGGCCACTCAGCCAATATTTGATCTTGGTCATTCTTGCTTGCAATATGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CAA 72 bp CTTCAGGCATTTGAGTTGCAGGTTAACCTGAGGAATTaGGTAAAGGTTTCAAGCCTTTGGCAAAGGCACTGG +
Preference number: 4 (lower is better)
Translates to: LQAFELQVNLRN*VKVSSLWQRHW
Trigger: CCAGTGCCTTTGCCAAAGGCTTGAAACCTTTACCAAATTCCTCAGGTTAACCTGCAACTCAAATGCCTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR CCA 90 bp AAGTGCATGAGCACATGCATGTTATGTAAACATAACAGTTGGTCAGATCATGAGCCCCATTTGGAGAACTaGCAGTGGAAGATGGAGCTC +
Preference number: 4 (lower is better)
Translates to: KCMSTCMLCKHNSWSDHEPHLEN*QWKMEL
Trigger: GAGCTCCATCTTCCACTGCCAGTTCTCCAAATGGGG...CTCATGATCTGACCAACTGTTATGTTTACATAACATGCATGTGCTCATGCACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CAA 72 bp AACACTCCCTGCTGGAAGGAACTTCAGGCATTTGAGTaGCAGGTTAACCTGAGGAATTTGGTAAAGGTTTCA +
Preference number: 4 (lower is better)
Translates to: NTPCWKELQAFE*QVNLRNLVKVS
Trigger: TGAAACCTTTACCAAATTCCTCAGGTTAACCTGCAACTCAAATGCCTGAAGTTCCTTCCAGCAGGGAGTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR TCA 90 bp CTTACATGTGCTTGCTGTAGGATTTGGGACATACAACCTTCTAAGAAGGAATGTGGGACACTGCTAAGATaGAGATACCCACAAGAATCA +
Preference number: 4 (lower is better)
Translates to: LTCACCRIWDIQPSKKECGTLLR*RYPQES
Trigger: TGATTCTTGTGGGTATCTTCATCTTAGCAGTGTCCC...ACATTCCTTCTTAGAAGGTTGTATGTCCCAAATCCTACAGCAAGCACATGTAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR TCA 90 bp TTAGCCTATCTTTTAAAATGTAACCATTATGACGTGCTGAGCAATGGGCAATGTCCAGGCGAATCATTGTaGAATCCATGTCACCAGCTC +
Preference number: 4 (lower is better)
Translates to: LAYLLKCNHYDVLSNGQCPGESL*NPCHQL
Trigger: GAGCTGGTGACATGGATTTCACAATGATTCGCCTGG...ACATTGCCCATTGCTCAGCACGTCATAATGGTTACATTTTAAAAGATAGGCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CAA 72 bp CTTGTGTTTCCTCCATGTAAAGACCAAGTGAGAAAGTaGCTGAGTCTTCATCACTGGGGTAACTGGATTTTT +
Preference number: 4 (lower is better)
Translates to: LVFPPCKDQVRK*LSLHHWGNWIF
Trigger: AAAAATCCAGTTACCCCAGTGATGAAGACTCAGCAACTTTCTCACTTGGTCTTTACATGGAGGAAACACAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
3UTR CAA 72 bp TCATACTTCTTTCTACCCTTTAGGGGTTTACCAGGATaGCATTCCTTGGATCACAGGATTCTATTTAGAGAG +
Preference number: 4 (lower is better)
Translates to: SYFFLPFRGLPG*HSLDHRILFRE
Trigger: CTCTCTAAATAGAATCCTGTGATCCAAGGAATGCAATCCTGGTAAACCCCTAAAGGGTAGAAAGAAGTATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS GCA 90 bp CTGTCCTGTTCGGTCCCGCAGCAGGGCCATCGCCTGCTCAGTCTGTaGCGCCTGCGCGTGCAGCCCCCACAGCGTGCCCTCCAGCCTCTG +
Preference number: 5 (lower is better)
Translates to: LSCSVPQQGHRLLSL*RLRVQPPQRALQPL
Trigger: CAGAGGCTGGAGGGCACGCTGTGGGGGCTGCACGCGCAGGCGGCACAGACTGAGCAGGCGATGGCCCTGCTGCGGGACCGAACAGGACAG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 90 bp TCGCCTGCTCAGTCTGTGCCGCCTGCGCGTGCAGCCCCCACAGCGTaGCCTCCAGCCTCTGCACCAAGCCGGCCAGGGCCAACAACGAGT +
Preference number: 5 (lower is better)
Translates to: SPAQSVPPARAAPTA*PPASAPSRPGPTTS
Trigger: ACTCGTTGTTGGCCCTGGCCGGCTTGGTGCAGAGGCTGGAGGGCACGCTGTGGGGGCTGCACGCGCAGGCGGCACAGACTGAGCAGGCGA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 90 bp GAGTCACTCTGCTGTCCTGTTCGGTCCCGCAGCAGGGCCATCGCCTaGTCAGTCTGTGCCGCCTGCGCGTGCAGCCCCCACAGCGTGCCC +
Preference number: 5 (lower is better)
Translates to: ESLCCPVRSRSRAIA*SVCAACACSPHSVP
Trigger: GGGCACGCTGTGGGGGCTGCACGCGCAGGCGGCACAGACTGAGCAGGCGATGGCCCTGCTGCGGGACCGAACAGGACAGCAGAGTGACTC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CCA 90 bp CCCAGGACCCCCACCCTGCGTGCTAGCCCATCCAGCAGGCCCGCGTaGCGCTGCAGCAGTAGCTGGCTTCGATTGCTTTCCACCTGCAGC +
Preference number: 5 (lower is better)
Translates to: PRTPTLRASPSSRPA*RCSSSWLRLLSTCS
Trigger: GCTGCAGGTGGAAAGCAATCGAAGCCAGCTACTGCTGCAGCGCCACGCGGGCCTGCTGGATGGGCTAGCACGCAGGGTGGGGGTCCTGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS TCA 90 bp GTAGCCACGTGCTGTGCAGGGCCACGTCATAGGACAGGCTGTGGTTaGGACCACGGAGCGCACCGCCCACGTCAGCCAGCTCCTCCCCCA +
Preference number: 5 (lower is better)
Translates to: VATCCAGPRHRTGCG*DHGAHRPRQPAPPP
Trigger: TGGGGGAGGAGCTGGCTGACGTGGGCGGTGCGCTCCGTGGTCTCAACCACAGCCTGTCCTATGACGTGGCCCTGCACAGCACGTGGCTAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS TCA 90 bp CAGGAAGACCAGAAGATACAGCCCCAGGACTGCATGCTTCAGCGCTaGGAGGGAGCCCAGCTGTGTACAGCAGCCTCCCGCCCGCCGTTT +
Preference number: 5 (lower is better)
Translates to: QEDQKIQPQDCMLQR*EGAQLCTAASRPPF
Trigger: AAACGGCGGGCGGGAGGCTGCTGTACACAGCTGGGCTCCCTCTCAGCGCTGAAGCATGCAGTCCTGGGGCTGTATCTTCTGGTCTTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS TCA 90 bp GCAGCAGCCGCAGCTGCATGTCCCGGAGGCTCTCATTCAGCCGGTTaGCGTTCCGAGTCAGCGCCTTCAAGTCATCTGGGGAGCTTCGAG +
Preference number: 5 (lower is better)
Translates to: AAAAAACPGGSHSAG*RSESAPSSHLGSFE
Trigger: CTCGAAGCTCCCCAGATGACTTGAAGGCGCTGACTCGGAACGTCAACCGGCTGAATGAGAGCCTCCGGGACATGCAGCTGCGGCTGCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 90 bp TGCTCTGTCAGGTCTGCCTGCAATGGAGCCTGCAGCAGCCGCAGCTaGATGTCCCGGAGGCTCTCATTCAGCCGGTTGACGTTCCGAGTC +
Preference number: 5 (lower is better)
Translates to: CSVRSACNGACSSRS*MSRRLSFSRLTFRV
Trigger: GACTCGGAACGTCAACCGGCTGAATGAGAGCCTCCGGGACATGCAGCTGCGGCTGCTGCAGGCTCCATTGCAGGCAGACCTGACAGAGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 90 bp GTTCTGCAGCGCATCCTGAACCTTCCACACCTGCTCTGTCAGGTCTaGCTGCAATGGAGCCTGCAGCAGCCGCAGCTGCATGTCCCGGAG +
Preference number: 5 (lower is better)
Translates to: VLQRILNLPHLLCQV*LQWSLQQPQLHVPE
Trigger: CTCCGGGACATGCAGCTGCGGCTGCTGCAGGCTCCATTGCAGGCAGACCTGACAGAGCAGGTGTGGAAGGTTCAGGATGCGCTGCAGAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 90 bp CATCCAGCAGGCCCGCGTGGCGCTGCAGCAGTAGCTGGCTTCGATTaGTTTCCACCTGCAGCTGGTAGAGTTCCAGCTGTGCGGAGTCAC +
Preference number: 5 (lower is better)
Translates to: HPAGPRGAAAVAGFD*FPPAAGRVPAVRSH
Trigger: GTGACTCCGCACAGCTGGAACTCTACCAGCTGCAGGTGGAAAGCAATCGAAGCCAGCTACTGCTGCAGCGCCACGCGGGCCTGCTGGATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS-3UTR CAA 90 bp CAGCCAGGCAAGCTGGCCCTGCACCACTCAGCTCAGGGTTTTGAGGTTCTCTGGGTGTCTGCGCTGGCATaGCTCACCAGCACCTGCAGG +
Preference number: 5 (lower is better)
Translates to: QPGKLALHHSAQGFEVLWVSALA*LTSTCR
Trigger: CCTGCAGGTGCTGGTGAGCAATGCCAGCGCAGACAC...CCAGAGAACCTCAAAACCCTGAGCTGAGTGGTGCAGGGCCAGCTTGCCTGGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS TCA 90 bp CCGGCCAGGGCCAACAACGAGTCTGTCTGGTTCTGCAGCGCATCCTaGACCTTCCACACCTGCTCTGTCAGGTCTGCCTGCAATGGAGCC +
Preference number: 5 (lower is better)
Translates to: PARANNESVWFCSAS*TFHTCSVRSACNGA
Trigger: GGCTCCATTGCAGGCAGACCTGACAGAGCAGGTGTGGAAGGTTCAGGATGCGCTGCAGAACCAGACAGACTCGTTGTTGGCCCTGGCCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CCA 90 bp CGCATCCTGAACCTTCCACACCTGCTCTGTCAGGTCTGCCTGCAATaGAGCCTGCAGCAGCCGCAGCTGCATGTCCCGGAGGCTCTCATT +
Preference number: 5 (lower is better)
Translates to: RILNLPHLLCQVCLQ*SLQQPQLHVPEALI
Trigger: AATGAGAGCCTCCGGGACATGCAGCTGCGGCTGCTGCAGGCTCCATTGCAGGCAGACCTGACAGAGCAGGTGTGGAAGGTTCAGGATGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CCA 90 bp TCTCCATGTCCATGTGCACCAGCCGCATACGGCGAGTGTCTGCGCTaGCATTGCTCACCAGCACCTGCAGGTCCTGTAGCCACGTGCTGT +
Preference number: 5 (lower is better)
Translates to: SPCPCAPAAYGECLR*HCSPAPAGPVATCC
Trigger: ACAGCACGTGGCTACAGGACCTGCAGGTGCTGGTGAGCAATGCCAGCGCAGACACTCGCCGTATGCGGCTGGTGCACATGGACATGGAGA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS-3UTR CAA 90 bp GAGTCCCTCCACCTCTTGGGTCAAGGACCTGCAGGGGTGGAGCTAGGAACAGGGTTTCCTTGGTCACCTTaGGGTCCCGGTGGCCCTTTG +
Preference number: 5 (lower is better)
Translates to: ESLHLLGQGPAGVELGTGFPWSP*GPGGPL
Trigger: CAAAGGGCCACCGGGACCCAAAGGTGACCAAGGAAA...CCCTGTTCCTAGCTCCACCCCTGCAGGTCCTTGACCCAAGAGGTGGAGGGACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS GCA 90 bp CTGGCTTCGATTGCTTTCCACCTGCAGCTGGTAGAGTTCCAGCTGTaGGGAGTCACTCTGCTGTCCTGTTCGGTCCCGCAGCAGGGCCAT +
Preference number: 5 (lower is better)
Translates to: LASIAFHLQLVEFQL*GVTLLSCSVPQQGH
Trigger: ATGGCCCTGCTGCGGGACCGAACAGGACAGCAGAGTGACTCCGCACAGCTGGAACTCTACCAGCTGCAGGTGGAAAGCAATCGAAGCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 90 bp AGGTCCTCGGTCACCACGTTGAGTGTGGCCAGCTCCTGCTTGAGCTaGATCTCCATGTCCATGTGCACCAGCCGCATACGGCGAGTGTCT +
Preference number: 5 (lower is better)
Translates to: RSSVTTLSVASSCLS*ISMSMCTSRIRRVS
Trigger: AGACACTCGCCGTATGCGGCTGGTGCACATGGACATGGAGATGCAGCTCAAGCAGGAGCTGGCCACACTCAACGTGGTGACCGAGGACCT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 90 bp TTCAGACGCAGGTCCTCGGTCACCACGTTGAGTGTGGCCAGCTCCTaGTTGAGCTGCATCTCCATGTCCATGTGCACCAGCCGCATACGG +
Preference number: 5 (lower is better)
Translates to: FRRRSSVTTLSVASS*LSCISMSMCTSRIR
Trigger: CCGTATGCGGCTGGTGCACATGGACATGGAGATGCAGCTCAAGCAGGAGCTGGCCACACTCAACGTGGTGACCGAGGACCTGCGTCTGAA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CCA 90 bp ATCATCACCCTTGGGACCAGGCAGTCCTGGGTCACCTCTCTCTCCTaGCAGACCTCGAGATCCAGGAAGTCCAGGGCTACCTGGCTTTCC +
Preference number: 5 (lower is better)
Translates to: IITLGTRQSWVTSLS*QTSRSRKSRATWLS
Trigger: GGAAAGCCAGGTAGCCCTGGACTTCCTGGATCTCGAGGTCTGCCAGGAGAGAGAGGTGACCCAGGACTGCCTGGTCCCAAGGGTGATGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 90 bp CCCACAAGAATCAGGAAGACCAGAAGATACAGCCCCAGGACTGCATaGTTCAGCGCTGAGAGGGAGCCCAGCTGTGTACAGCAGCCTCCC +
Preference number: 5 (lower is better)
Translates to: PTRIRKTRRYSPRTA*FSAEREPSCVQQPP
Trigger: GGGAGGCTGCTGTACACAGCTGGGCTCCCTCTCAGCGCTGAAGCATGCAGTCCTGGGGCTGTATCTTCTGGTCTTCCTGATTCTTGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS TCA 90 bp CCCGGCCCTGGTGTGGGCCGGAGCCATTCACCAGGCGAATCATTGTaGAATCCATGTCACCAGCTCTCTCTCCTCTCTCTCCTTTCTCTC +
Preference number: 5 (lower is better)
Translates to: PGPGVGRSHSPGESL*NPCHQLSLLSLLSL
Trigger: GAGAGAAAGGAGAGAGAGGAGAGAGAGCTGGTGACATGGATTTCACAATGATTCGCCTGGTGAATGGCTCCGGCCCACACCAGGGCCGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS CCA 90 bp GGAAGTCCAGGGCTACCTGGCTTTCCCTCCTTCCCTTCATTTCCTTaGTCACCTTTGGGTCCCGGTGGCCCTTTGGCAAGGGTGATGTTC +
Preference number: 5 (lower is better)
Translates to: GSPGLPGFPSFPSFP*SPLGPGGPLARVMF
Trigger: GAACATCACCCTTGCCAAAGGGCCACCGGGACCCAAAGGTGACCAAGGAAATGAAGGGAAGGAGGGAAAGCCAGGTAGCCCTGGACTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS-3UTR CAA 90 bp AGTAGGGCCAACTGGCAGCAAGGGTGGGGTGGTGTTGGATCAGGCATGAGCCATAGTAGCTGGCTTCGATaGCTTTCCACCTGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: SRANWQQGWGGVGSGMSHSSWLR*LSTCSW
Trigger: CCAGCTGCAGGTGGAAAGCAATCGAAGCCAGCTACT...ATGGCTCATGCCTGATCCAACACCACCCCACCCTTGCTGCCAGTTGGCCCTACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS GCA 90 bp GTTCCCTTGCAGTTCACATCGTCCATCCAAATCCTCCCTGTGCCTTaGCCAAAACGAGCTGTCCGGTACACCTCCTCAACCCCGTGGAAG +
Preference number: 5 (lower is better)
Translates to: VPLQFTSSIQILPVP*PKRAVRYTSSTPWK
Trigger: CTTCCACGGGGTTGAGGAGGTGTACCGGACAGCTCGTTTTGGGCAAGGCACAGGGAGGATTTGGATGGACGATGTGAACTGCAAGGGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS GCA 90 bp TCTCGGTTCCCTTGCAGTTCACATCGTCCATCCAAATCCTCCCTGTaGCTTGCCCAAAACGAGCTGTCCGGTACACCTCCTCAACCCCGT +
Preference number: 5 (lower is better)
Translates to: SRFPCSSHRPSKSSL*LAQNELSGTPPQPR
Trigger: ACGGGGTTGAGGAGGTGTACCGGACAGCTCGTTTTGGGCAAGGCACAGGGAGGATTTGGATGGACGATGTGAACTGCAAGGGAACCGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS CCA 90 bp CCGCCCGCCGTTTGTGACATGGACCATCCTCACACAGGTTCAGCTTaGACAGGCTCCTGCCATCAAAGGGTTCTTCAAAGATGGAGCCGT +
Preference number: 5 (lower is better)
Translates to: PPAVCDMDHPHTGSA*TGSCHQRVLQRWSR
Trigger: ACGGCTCCATCTTTGAAGAACCCTTTGATGGCAGGAGCCTGTCCAAGCTGAACCTGTGTGAGGATGGTCCATGTCACAAACGGCGGGCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS-3UTR CAA 90 bp GTTCACACTGACTGCAAGCATGGCCCCCAGGAGTTTTCCCTAATACCACACACTGTGGCCAGCTCCTGCTaGAGCTGCATCTCCATGTCC +
Preference number: 5 (lower is better)
Translates to: VHTDCKHGPQEFSLIPHTVASSC*SCISMS
Trigger: GGACATGGAGATGCAGCTCAAGCAGGAGCTGGCCAC...AGTGTGTGGTATTAGGGAAAACTCCTGGGGGCCATGCTTGCAGTCAGTGTGAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS GCA 90 bp CCCATTTGGAGAACTGGCAGTGGAAGATGGAGCTCTCGGTTCCCTTaGAGTTCACATCGTCCATCCAAATCCTCCCTGTGCCTTGCCCAA +
Preference number: 5 (lower is better)
Translates to: PIWRTGSGRWSSRFP*SSHRPSKSSLCLAQ
Trigger: TTGGGCAAGGCACAGGGAGGATTTGGATGGACGATGTGAACTGCAAGGGAACCGAGAGCTCCATCTTCCACTGCCAGTTCTCCAAATGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS CCA 90 bp GGTTCAGCTTGGACAGGCTCCTGCCATCAAAGGGTTCTTCAAAGATaGAGCCGTTGTCACGGTCACTCACGGTGTGCAGGTACATGGCTT +
Preference number: 5 (lower is better)
Translates to: GSAWTGSCHQRVLQR*SRCHGHSRCAGTWL
Trigger: AAGCCATGTACCTGCACACCGTGAGTGACCGTGACAACGGCTCCATCTTTGAAGAACCCTTTGATGGCAGGAGCCTGTCCAAGCTGAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS-3UTR CAA 90 bp GGAACAGGGACAGGAAGTGATCTGAAACCTATCCACACTCCCAAATCCCACAACCTCTCATTCAGCCGGTaGACGTTCCGAGTCAGCGCC +
Preference number: 5 (lower is better)
Translates to: GTGTGSDLKPIHTPKSHNLSFSR*TFRVSA
Trigger: GGCGCTGACTCGGAACGTCAACCGGCTGAATGAGAG...GTTGTGGGATTTGGGAGTGTGGATAGGTTTCAGATCACTTCCTGTCCCTGTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS GCA 90 bp TGTGACATGGACCATCCTCACACAGGTTCAGCTTGGACAGGCTCCTaGCATCAAAGGGTTCTTCAAAGATGGAGCCGTTGTCACGGTCAC +
Preference number: 5 (lower is better)
Translates to: CDMDHPHTGSAWTGS*HQRVLQRWSRCHGH
Trigger: GTGACCGTGACAACGGCTCCATCTTTGAAGAACCCTTTGATGGCAGGAGCCTGTCCAAGCTGAACCTGTGTGAGGATGGTCCATGTCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS TCA 90 bp CCTTCAAGTCATCTGGGGAGCTTCGAGGCCGGGACACTGCTAAGATaGAGATACCCACAAGAATCAGGAAGACCAGAAGATACAGCCCCA +
Preference number: 5 (lower is better)
Translates to: PSSHLGSFEAGTLLR*RYPQESGRPEDTAP
Trigger: TGGGGCTGTATCTTCTGGTCTTCCTGATTCTTGTGGGTATCTTCATCTTAGCAGTGTCCCGGCCTCGAAGCTCCCCAGATGACTTGAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS-3UTR CAA 90 bp CAAGATCAAATATTGGCTGAGTGGCCAGTCAGGATCTTTGGGGCAACTATACCTGTGGCCAGCTCCTGCTaGAGCTGCATCTCCATGTCC +
Preference number: 5 (lower is better)
Translates to: QDQILAEWPVRIFGATIPVASSC*SCISMS
Trigger: GGACATGGAGATGCAGCTCAAGCAGGAGCTGGCCAC...AGGTATAGTTGCCCCAAAGATCCTGACTGGCCACTCAGCCAATATTTGATCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CAA 90 bp TTCCCTCCATTCCCAGCTCCAGCTGGGTTTATCAGGTATCTGCCATTTTCTTATTTCCCATCATCACCCTaGGGACCAGGCAGTCCTGGG +
Preference number: 5 (lower is better)
Translates to: FPPFPAPAGFIRYLPFSYFPSSP*GPGSPG
Trigger: CCCAGGACTGCCTGGTCCCAAGGGTGATGATGGGAA...ATAAGAAAATGGCAGATACCTGATAAACCCAGCTGGAGCTGGGAATGGAGGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CAA 90 bp AACCTCCTCCCTGGGTCAAGAGCAAATTATGTTCTCTTTGTAAGCAGGGGGAAGTCACACAGGTTCAGCTaGGACAGGCTCCTGCCATCA +
Preference number: 5 (lower is better)
Translates to: NLLPGSRANYVLFVSRGKSHRFS*DRLLPS
Trigger: TGATGGCAGGAGCCTGTCCAAGCTGAACCTGTGTGA...CTTCCCCCTGCTTACAAAGAGAACATAATTTGCTCTTGACCCAGGGAGGAGGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CAA 90 bp AATGACCATATTCACTCTGCTGGCTGTGACCTCCTGTTTGGGTTCTCAAGTCAGTCACACAGGTTCAGCTaGGACAGGCTCCTGCCATCA +
Preference number: 5 (lower is better)
Translates to: NDHIHSAGCDLLFGFSSQSHRFS*DRLLPS
Trigger: TGATGGCAGGAGCCTGTCCAAGCTGAACCTGTGTGA...CTGACTTGAGAACCCAAACAGGAGGTCACAGCCAGCAGAGTGAATATGGTCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR CAA 90 bp ACTATAGTAACACTCCCTGCTGGAAGGAACTTCAGGCATTTGAGTTGCAGGTTATTCCCATCATCACCCTaGGGACCAGGCAGTCCTGGG +
Preference number: 5 (lower is better)
Translates to: TIVTLPAGRNFRHLSCRLFPSSP*GPGSPG
Trigger: CCCAGGACTGCCTGGTCCCAAGGGTGATGATGGGAA...TAACCTGCAACTCAAATGCCTGAAGTTCCTTCCAGCAGGGAGTGTTACTATAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS-3UTR CAA 90 bp AGGCCTCTCATTTCCCATGGGAAGGTTATAGGAATTTCATACTTCTTTCTACCCCTCTCATTCAGCCGGTaGACGTTCCGAGTCAGCGCC +
Preference number: 5 (lower is better)
Translates to: RPLISHGKVIGISYFFLPLSFSR*TFRVSA
Trigger: GGCGCTGACTCGGAACGTCAACCGGCTGAATGAGAG...GGGTAGAAAGAAGTATGAAATTCCTATAACCTTCCCATGGGAAATGAGAGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CAA 90 bp AAGTGCATGAGCACATGCATGTTATGTAAACATAACAGTTGGTCAGATCATGAGGTGTCTGCGCTGGCATaGCTCACCAGCACCTGCAGG +
Preference number: 5 (lower is better)
Translates to: KCMSTCMLCKHNSWSDHEVSALA*LTSTCR
Trigger: CCTGCAGGTGCTGGTGAGCAATGCCAGCGCAGACAC...CTCATGATCTGACCAACTGTTATGTTTACATAACATGCATGTGCTCATGCACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS-3UTR CAA 90 bp AAGTGCATGAGCACATGCATGTTATGTAAACATAACAGTTGGTCAGATCATGAGTTTCCTTGGTCACCTTaGGGTCCCGGTGGCCCTTTG +
Preference number: 5 (lower is better)
Translates to: KCMSTCMLCKHNSWSDHEFPWSP*GPGGPL
Trigger: CAAAGGGCCACCGGGACCCAAAGGTGACCAAGGAAA...CTCATGATCTGACCAACTGTTATGTTTACATAACATGCATGTGCTCATGCACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS GCA 72 bp TCGGTCCCGCAGCAGGGCCATCGCCTGCTCAGTCTGTaGCGCCTGCGCGTGCAGCCCCCACAGCGTGCCCTC +
Preference number: 6 (lower is better)
Translates to: SVPQQGHRLLSL*RLRVQPPQRAL
Trigger: GAGGGCACGCTGTGGGGGCTGCACGCGCAGGCGGCACAGACTGAGCAGGCGATGGCCCTGCTGCGGGACCGA
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 72 bp TGCTGTCCTGTTCGGTCCCGCAGCAGGGCCATCGCCTaGTCAGTCTGTGCCGCCTGCGCGTGCAGCCCCCAC +
Preference number: 6 (lower is better)
Translates to: CCPVRSRSRAIA*SVCAACACSPH
Trigger: GTGGGGGCTGCACGCGCAGGCGGCACAGACTGAGCAGGCGATGGCCCTGCTGCGGGACCGAACAGGACAGCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CCA 72 bp CCCACCCTGCGTGCTAGCCCATCCAGCAGGCCCGCGTaGCGCTGCAGCAGTAGCTGGCTTCGATTGCTTTCC +
Preference number: 6 (lower is better)
Translates to: PTLRASPSSRPA*RCSSSWLRLLS
Trigger: GGAAAGCAATCGAAGCCAGCTACTGCTGCAGCGCCACGCGGGCCTGCTGGATGGGCTAGCACGCAGGGTGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS TCA 72 bp TGCTGTGCAGGGCCACGTCATAGGACAGGCTGTGGTTaGGACCACGGAGCGCACCGCCCACGTCAGCCAGCT +
Preference number: 6 (lower is better)
Translates to: CCAGPRHRTGCG*DHGAHRPRQPA
Trigger: AGCTGGCTGACGTGGGCGGTGCGCTCCGTGGTCTCAACCACAGCCTGTCCTATGACGTGGCCCTGCACAGCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 72 bp CTGCGTGCTAGCCCATCCAGCAGGCCCGCGTGGCGCTaGAGCAGTAGCTGGCTTCGATTGCTTTCCACCTGC +
Preference number: 6 (lower is better)
Translates to: LRASPSSRPAWR*SSSWLRLLSTC
Trigger: GCAGGTGGAAAGCAATCGAAGCCAGCTACTGCTGCAGCGCCACGCGGGCCTGCTGGATGGGCTAGCACGCAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 72 bp CACACCTGCTCTGTCAGGTCTGCCTGCAATGGAGCCTaGAGCAGCCGCAGCTGCATGTCCCGGAGGCTCTCA +
Preference number: 6 (lower is better)
Translates to: HTCSVRSACNGA*SSRSCMSRRLS
Trigger: TGAGAGCCTCCGGGACATGCAGCTGCGGCTGCTGCAGGCTCCATTGCAGGCAGACCTGACAGAGCAGGTGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CCA 72 bp CCATGTGCACCAGCCGCATACGGCGAGTGTCTGCGCTaGCATTGCTCACCAGCACCTGCAGGTCCTGTAGCC +
Preference number: 6 (lower is better)
Translates to: PCAPAAYGECLR*HCSPAPAGPVA
Trigger: GGCTACAGGACCTGCAGGTGCTGGTGAGCAATGCCAGCGCAGACACTCGCCGTATGCGGCTGGTGCACATGG
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CAA 72 bp TGCACCAGCCGCATACGGCGAGTGTCTGCGCTGGCATaGCTCACCAGCACCTGCAGGTCCTGTAGCCACGTG +
Preference number: 6 (lower is better)
Translates to: CTSRIRRVSALA*LTSTCRSCSHV
Trigger: CACGTGGCTACAGGACCTGCAGGTGCTGGTGAGCAATGCCAGCGCAGACACTCGCCGTATGCGGCTGGTGCA
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CAA 90 bp ATGTCCATGTGCACCAGCCGCATACGGCGAGTGTCTGCGCTGGCATaGCTCACCAGCACCTGCAGGTCCTGTAGCCACGTGCTGTGCAGG +
Preference number: 6 (lower is better)
Translates to: MSMCTSRIRRVSALA*LTSTCRSCSHVLCR
Trigger: CCTGCACAGCACGTGGCTACAGGACCTGCAGGTGCTGGTGAGCAATGCCAGCGCAGACACTCGCCGTATGCGGCTGGTGCACATGGACAT
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CCA 72 bp CTTGGGACCAGGCAGTCCTGGGTCACCTCTCTCTCCTaGCAGACCTCGAGATCCAGGAAGTCCAGGGCTACC +
Preference number: 6 (lower is better)
Translates to: LGTRQSWVTSLS*QTSRSRKSRAT
Trigger: GGTAGCCCTGGACTTCCTGGATCTCGAGGTCTGCCAGGAGAGAGAGGTGACCCAGGACTGCCTGGTCCCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CAA 90 bp TGCAGCAGCCGCAGCTGCATGTCCCGGAGGCTCTCATTCAGCCGGTaGACGTTCCGAGTCAGCGCCTTCAAGTCATCTGGGGAGCTTCGA +
Preference number: 6 (lower is better)
Translates to: CSSRSCMSRRLSFSR*TFRVSAFKSSGELR
Trigger: TCGAAGCTCCCCAGATGACTTGAAGGCGCTGACTCGGAACGTCAACCGGCTGAATGAGAGCCTCCGGGACATGCAGCTGCGGCTGCTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CAA 90 bp AGACGCAGGTCCTCGGTCACCACGTTGAGTGTGGCCAGCTCCTGCTaGAGCTGCATCTCCATGTCCATGTGCACCAGCCGCATACGGCGA +
Preference number: 6 (lower is better)
Translates to: RRRSSVTTLSVASSC*SCISMSMCTSRIRR
Trigger: TCGCCGTATGCGGCTGGTGCACATGGACATGGAGATGCAGCTCAAGCAGGAGCTGGCCACACTCAACGTGGTGACCGAGGACCTGCGTCT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS TCA 72 bp GCAGCTGCATGTCCCGGAGGCTCTCATTCAGCCGGTTaGCGTTCCGAGTCAGCGCCTTCAAGTCATCTGGGG +
Preference number: 6 (lower is better)
Translates to: AAACPGGSHSAG*RSESAPSSHLG
Trigger: CCCCAGATGACTTGAAGGCGCTGACTCGGAACGTCAACCGGCTGAATGAGAGCCTCCGGGACATGCAGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 72 bp CGCATCCTGAACCTTCCACACCTGCTCTGTCAGGTCTaGCTGCAATGGAGCCTGCAGCAGCCGCAGCTGCAT +
Preference number: 6 (lower is better)
Translates to: RILNLPHLLCQV*LQWSLQQPQLH
Trigger: ATGCAGCTGCGGCTGCTGCAGGCTCCATTGCAGGCAGACCTGACAGAGCAGGTGTGGAAGGTTCAGGATGCG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 72 bp CATTGCTCACCAGCACCTGCAGGTCCTGTAGCCACGTaGTGTGCAGGGCCACGTCATAGGACAGGCTGTGGT +
Preference number: 6 (lower is better)
Translates to: HCSPAPAGPVAT*CAGPRHRTGCG
Trigger: ACCACAGCCTGTCCTATGACGTGGCCCTGCACAGCACGTGGCTACAGGACCTGCAGGTGCTGGTGAGCAATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CAA 72 bp CGCAGCTGCATGTCCCGGAGGCTCTCATTCAGCCGGTaGACGTTCCGAGTCAGCGCCTTCAAGTCATCTGGG +
Preference number: 6 (lower is better)
Translates to: RSCMSRRLSFSR*TFRVSAFKSSG
Trigger: CCCAGATGACTTGAAGGCGCTGACTCGGAACGTCAACCGGCTGAATGAGAGCCTCCGGGACATGCAGCTGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CAA 72 bp TCCTCGGTCACCACGTTGAGTGTGGCCAGCTCCTGCTaGAGCTGCATCTCCATGTCCATGTGCACCAGCCGC +
Preference number: 6 (lower is better)
Translates to: SSVTTLSVASSC*SCISMSMCTSR
Trigger: GCGGCTGGTGCACATGGACATGGAGATGCAGCTCAAGCAGGAGCTGGCCACACTCAACGTGGTGACCGAGGA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS TCA 72 bp GGTCACCTTTGGGTCCCGGTGGCCCTTTGGCAAGGGTaGTGTTCCTCAAGGCGATGGAGTGTTCCCAGTCCT +
Preference number: 6 (lower is better)
Translates to: GHLWVPVALWQG*CSSRRWSVPSP
Trigger: AGGACTGGGAACACTCCATCGCCTTGAGGAACATCACCCTTGCCAAAGGGCCACCGGGACCCAAAGGTGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 72 bp GTCACCACGTTGAGTGTGGCCAGCTCCTGCTTGAGCTaGATCTCCATGTCCATGTGCACCAGCCGCATACGG +
Preference number: 6 (lower is better)
Translates to: VTTLSVASSCLS*ISMSMCTSRIR
Trigger: CCGTATGCGGCTGGTGCACATGGACATGGAGATGCAGCTCAAGCAGGAGCTGGCCACACTCAACGTGGTGAC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 72 bp AGGTCCTCGGTCACCACGTTGAGTGTGGCCAGCTCCTaGTTGAGCTGCATCTCCATGTCCATGTGCACCAGC +
Preference number: 6 (lower is better)
Translates to: RSSVTTLSVASS*LSCISMSMCTS
Trigger: GCTGGTGCACATGGACATGGAGATGCAGCTCAAGCAGGAGCTGGCCACACTCAACGTGGTGACCGAGGACCT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS TCA 72 bp GCCAACAACGAGTCTGTCTGGTTCTGCAGCGCATCCTaGACCTTCCACACCTGCTCTGTCAGGTCTGCCTGC +
Preference number: 6 (lower is better)
Translates to: ANNESVWFCSAS*TFHTCSVRSAC
Trigger: GCAGGCAGACCTGACAGAGCAGGTGTGGAAGGTTCAGGATGCGCTGCAGAACCAGACAGACTCGTTGTTGGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 72 bp ATTGCTTTCCACCTGCAGCTGGTAGAGTTCCAGCTGTaGGGAGTCACTCTGCTGTCCTGTTCGGTCCCGCAG +
Preference number: 6 (lower is better)
Translates to: IAFHLQLVEFQL*GVTLLSCSVPQ
Trigger: CTGCGGGACCGAACAGGACAGCAGAGTGACTCCGCACAGCTGGAACTCTACCAGCTGCAGGTGGAAAGCAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CAA 90 bp GGTTCCCTTGCAGTTCACATCGTCCATCCAAATCCTCCCTGTGCCTaGCCCAAAACGAGCTGTCCGGTACACCTCCTCAACCCCGTGGAA +
Preference number: 6 (lower is better)
Translates to: GSLAVHIVHPNPPCA*PKTSCPVHLLNPVE
Trigger: TTCCACGGGGTTGAGGAGGTGTACCGGACAGCTCGTTTTGGGCAAGGCACAGGGAGGATTTGGATGGACGATGTGAACTGCAAGGGAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS GCA 72 bp ATCAGGAAGACCAGAAGATACAGCCCCAGGACTGCATaGTTCAGCGCTGAGAGGGAGCCCAGCTGTGTACAG +
Preference number: 6 (lower is better)
Translates to: IRKTRRYSPRTA*FSAEREPSCVQ
Trigger: CTGTACACAGCTGGGCTCCCTCTCAGCGCTGAAGCATGCAGTCCTGGGGCTGTATCTTCTGGTCTTCCTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CAA 90 bp CCCCATTTGGAGAACTGGCAGTGGAAGATGGAGCTCTCGGTTCCCTaGCAGTTCACATCGTCCATCCAAATCCTCCCTGTGCCTTGCCCA +
Preference number: 6 (lower is better)
Translates to: PHLENWQWKMELSVP*QFTSSIQILPVPCP
Trigger: TGGGCAAGGCACAGGGAGGATTTGGATGGACGATGTGAACTGCAAGGGAACCGAGAGCTCCATCTTCCACTGCCAGTTCTCCAAATGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS TCA 72 bp GGTGTGGGCCGGAGCCATTCACCAGGCGAATCATTGTaGAATCCATGTCACCAGCTCTCTCTCCTCTCTCTC +
Preference number: 6 (lower is better)
Translates to: GVGRSHSPGESL*NPCHQLSLLSL
Trigger: GAGAGAGAGGAGAGAGAGCTGGTGACATGGATTTCACAATGATTCGCCTGGTGAATGGCTCCGGCCCACACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS GCA 72 bp CAGTTCACATCGTCCATCCAAATCCTCCCTGTGCCTTaGCCAAAACGAGCTGTCCGGTACACCTCCTCAACC +
Preference number: 6 (lower is better)
Translates to: QFTSSIQILPVP*PKRAVRYTSST
Trigger: GGTTGAGGAGGTGTACCGGACAGCTCGTTTTGGGCAAGGCACAGGGAGGATTTGGATGGACGATGTGAACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS GCA 72 bp CCTTGCAGTTCACATCGTCCATCCAAATCCTCCCTGTaGCTTGCCCAAAACGAGCTGTCCGGTACACCTCCT +
Preference number: 6 (lower is better)
Translates to: PCSSHRPSKSSL*LAQNELSGTPP
Trigger: AGGAGGTGTACCGGACAGCTCGTTTTGGGCAAGGCACAGGGAGGATTTGGATGGACGATGTGAACTGCAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS CCA 72 bp TGGACAGGCTCCTGCCATCAAAGGGTTCTTCAAAGATaGAGCCGTTGTCACGGTCACTCACGGTGTGCAGGT +
Preference number: 6 (lower is better)
Translates to: WTGSCHQRVLQR*SRCHGHSRCAG
Trigger: ACCTGCACACCGTGAGTGACCGTGACAACGGCTCCATCTTTGAAGAACCCTTTGATGGCAGGAGCCTGTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CCA 72 bp CTTCCCTTCATTTCCTTGGTCACCTTTGGGTCCCGGTaGCCCTTTGGCAAGGGTGATGTTCCTCAAGGCGAT +
Preference number: 6 (lower is better)
Translates to: LPFISLVTFGSR*PFGKGDVPQGD
Trigger: ATCGCCTTGAGGAACATCACCCTTGCCAAAGGGCCACCGGGACCCAAAGGTGACCAAGGAAATGAAGGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CCA 72 bp ACCAGCTCTCTCTCCTCTCTCTCCTTTCTCTCCTTTTaGGCCTCGATCACCTTTGAATCCGCGCATGCCCAT +
Preference number: 6 (lower is better)
Translates to: TSSLSSLSFLSF*ASITFESAHAH
Trigger: ATGGGCATGCGCGGATTCAAAGGTGATCGAGGCCCAAAAGGAGAGAAAGGAGAGAGAGGAGAGAGAGCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022610.15
CDS CAA 72 bp CTCCTGCCATCAAAGGGTTCTTCAAAGATGGAGCCGTaGTCACGGTCACTCACGGTGTGCAGGTACATGGCT +
Preference number: 6 (lower is better)
Translates to: LLPSKGSSKMEP*SRSLTVCRYMA
Trigger: AGCCATGTACCTGCACACCGTGAGTGACCGTGACAACGGCTCCATCTTTGAAGAACCCTTTGATGGCAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CAA 90 bp TTGGACAGGCTCCTGCCATCAAAGGGTTCTTCAAAGATGGAGCCGTaGTCACGGTCACTCACGGTGTGCAGGTACATGGCTTTGTTGTCC +
Preference number: 6 (lower is better)
Translates to: LDRLLPSKGSSKMEP*SRSLTVCRYMALLS
Trigger: GGACAACAAAGCCATGTACCTGCACACCGTGAGTGACCGTGACAACGGCTCCATCTTTGAAGAACCCTTTGATGGCAGGAGCCTGTCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS GCA 72 bp GACCATCCTCACACAGGTTCAGCTTGGACAGGCTCCTaGCATCAAAGGGTTCTTCAAAGATGGAGCCGTTGT +
Preference number: 6 (lower is better)
Translates to: DHPHTGSAWTGS*HQRVLQRWSRC
Trigger: ACAACGGCTCCATCTTTGAAGAACCCTTTGATGGCAGGAGCCTGTCCAAGCTGAACCTGTGTGAGGATGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CCA 72 bp TTCAGCTCTCTCTCCTCTCTCTCCTTTCTCTCCTTTTaGGCCTCGATCACCTTTGAATCCGCGCATGCCCAT +
Preference number: 6 (lower is better)
Translates to: FSSLSSLSFLSF*ASITFESAHAH
Trigger: ATGGGCATGCGCGGATTCAAAGGTGATCGAGGCCCAAAAGGAGAGAAAGGAGAGAGAGGAGAGAGAGCTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069226.7
CDS TCA 72 bp CATCTGGGGAGCTTCGAGGCCGGGACACTGCTAAGATaGAGATACCCACAAGAATCAGGAAGACCAGAAGAT +
Preference number: 6 (lower is better)
Translates to: HLGSFEAGTLLR*RYPQESGRPED
Trigger: ATCTTCTGGTCTTCCTGATTCTTGTGGGTATCTTCATCTTAGCAGTGTCCCGGCCTCGAAGCTCCCCAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7
CDS CCA 72 bp GTTTGTGACATGGACCATCCTCACACAGGTTCAGCTTaGACAGGCTCCTGCCATCAAAGGGTTCTTCAAAGA +
Preference number: 6 (lower is better)
Translates to: VCDMDHPHTGSA*TGSCHQRVLQR
Trigger: TCTTTGAAGAACCCTTTGATGGCAGGAGCCTGTCCAAGCTGAACCTGTGTGAGGATGGTCCATGTCACAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022610.15
ENSMUST00000069226.7