Pregenerated sensors for SCAMP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021687Ensembl transcript IDs: ENSMUST00000022197.15, ENSMUST00000138255.2, ENSMUST00000152555.8, ENSMUST00000153558.8
Found 112 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGGAACTGCACCCCAGCTCTGCACAGAGTCCCCGACTGCAGCCTTaGGGACAGGGTACAGTGGCTCAGCCACTCACTTCAGCTCATTTT | + |
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Preference number: 1 (lower is better) Translates to: KELHPSSAQSPRLQP*GQGTVAQPLTSAHF Trigger: AAAATGAGCTGAAGTGAGTGGCTGAGCCACTGTACCCTGTCCCCAAGGCTGCAGTCGGGGACTCTGTGCAGAGCTGGGGTGCAGTTCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR GCA 90 bp | TTGGGATTGAATAGAAGACGTCAACAGGCTTTCACCAAATCACAGTaGACTGCTGACAGACTGCTGCTGAGAGGACAGCAGGTAAGGGCT | + |
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Preference number: 1 (lower is better) Translates to: LGLNRRRQQAFTKSQ*TADRLLLRGQQVRA Trigger: AGCCCTTACCTGCTGTCCTCTCAGCAGCAGTCTGTCAGCAGTGCACTGTGATTTGGTGAAAGCCTGTTGACGTCTTCTATTCAATCCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR GCA 90 bp | GGACTATTGTACTTAGTAAATTCCCAAGCAAATCTAGCATGGCCCTaGATGGGCAGATGTATAATCCAATACCACAGACCTCAAGGAACT | + |
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Preference number: 1 (lower is better) Translates to: GLLYLVNSQANLAWP*MGRCIIQYHRPQGT Trigger: AGTTCCTTGAGGTCTGTGGTATTGGATTATACATCTGCCCATGCAGGGCCATGCTAGATTTGCTTGGGAATTTACTAAGTACAATAGTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR-3UTR CCA 90 bp | CCACAGACCTCAAGGAACTGCACCCCAGCTCTGCACAGAGTCCCCGACTGCAGCCATGCACATGTGGATTaGAAATACCCATGCTTTTGT | + |
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Preference number: 2 (lower is better) Translates to: PQTSRNCTPALHRVPDCSHAHVD*KYPCFC Trigger: ACAAAAGCATGGGTATTTCCAATCCACATGTGCATG...GCTGCAGTCGGGGACTCTGTGCAGAGCTGGGGTGCAGTTCCTTGAGGTCTGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR-3UTR TCA 90 bp | GCCTGTCCTCGTGCAGCTCGTCTCATGGCTGCAGTAACATTGGGATTGAATAGATCAAACCACACTGGATaGAGCACAGTCGCTCAGCAG | + |
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Preference number: 2 (lower is better) Translates to: ACPRAARLMAAVTLGLNRSNHTG*STVAQQ Trigger: CTGCTGAGCGACTGTGCTTCATCCAGTGTGGTTTGA...TCTATTCAATCCCAATGTTACTGCAGCCATGAGACGAGCTGCACGAGGACAGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR-3UTR CCA 90 bp | AAATCACAGTGCACTGCTGACAGACTGCTGCTGAGAGGACAGCAGGTAAGGGCTCAAGCAAATCTAGCATaGCCCTGCATGGGCAGATGT | + |
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Preference number: 2 (lower is better) Translates to: KSQCTADRLLLRGQQVRAQANLA*PCMGRC Trigger: ACATCTGCCCATGCAGGGCCATGCTAGATTTGCTTG...AGCCCTTACCTGCTGTCCTCTCAGCAGCAGTCTGTCAGCAGTGCACTGTGATTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR-3UTR TCA 90 bp | CAATACCACAGACCTCAAGGAACTGCACCCCAGCTCTGCACAGAGTCCCCGACTCACCCAAACTTTTGCTaGCCTTGTTCCTTCGTTATT | + |
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Preference number: 2 (lower is better) Translates to: QYHRPQGTAPQLCTESPTHPNFC*PCSFVI Trigger: AATAACGAAGGAACAAGGTCAGCAAAAGTTTGGGTG...AGTCGGGGACTCTGTGCAGAGCTGGGGTGCAGTTCCTTGAGGTCTGTGGTATTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR CAA 90 bp | ATGGATGCCTGTCCTCGTGCAGCTCGTCTCATGGCTGCAGTAACATaGGGATTGAATAGAAGACGTCAACAGGCTTTCACCAAATCACAG | + |
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Preference number: 2 (lower is better) Translates to: MDACPRAARLMAAVT*GLNRRRQQAFTKSQ Trigger: CTGTGATTTGGTGAAAGCCTGTTGACGTCTTCTATTCAATCCCAATGTTACTGCAGCCATGAGACGAGCTGCACGAGGACAGGCATCCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR-3UTR GCA 90 bp | GCCTGTCCTCGTGCAGCTCGTCTCATGGCTGCAGTAACATTGGGATTGAATAGAGAGCTTTCTCTCCATTaGTTGGTGCAATGTTTCACA | + |
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Preference number: 2 (lower is better) Translates to: ACPRAARLMAAVTLGLNRELSLH*LVQCFT Trigger: TGTGAAACATTGCACCAAGCAATGGAGAGAAAGCTC...TCTATTCAATCCCAATGTTACTGCAGCCATGAGACGAGCTGCACGAGGACAGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR-3UTR TCA 90 bp | AAATCACAGTGCACTGCTGACAGACTGCTGCTGAGAGGACAGCAGGTAAGGGCTACAGAAAATCATTTCTaGTTCTATAAAGAGCCCCAG | + |
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Preference number: 2 (lower is better) Translates to: KSQCTADRLLLRGQQVRATENHF*FYKEPQ Trigger: CTGGGGCTCTTTATAGAATCAGAAATGATTTTCTGT...AGCCCTTACCTGCTGTCCTCTCAGCAGCAGTCTGTCAGCAGTGCACTGTGATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR-3UTR GCA 90 bp | AAATCACAGTGCACTGCTGACAGACTGCTGCTGAGAGGACAGCAGGTAAGGGCTCAAACTACAACAGTCTaGCTTACAAATGTTCTTGAG | + |
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Preference number: 2 (lower is better) Translates to: KSQCTADRLLLRGQQVRAQTTTV*LTNVLE Trigger: CTCAAGAACATTTGTAAGGCAGACTGTTGTAGTTTG...AGCCCTTACCTGCTGTCCTCTCAGCAGCAGTCTGTCAGCAGTGCACTGTGATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR-3UTR TCA 90 bp | TATACATTATCTACTACAGAGCACACAGGCTCTTCTCTGGTGACTGAACCTCATTCAGTGTGTCACCACTaGAATAATCTGAGGAACACC | + |
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Preference number: 2 (lower is better) Translates to: YTLSTTEHTGSSLVTEPHSVCHH*NNLRNT Trigger: GGTGTTCCTCAGATTATTTCAGTGGTGACACACTGA...ATGAGGTTCAGTCACCAGAGAAGAGCCTGTGTGCTCTGTAGTAGATAATGTATA 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
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| 3UTR-3UTR CCA 90 bp | TCTACTACAGAGCACACAGGCTCTTCTCTGGTGACTGAACCTCATATAAAGCAACATGCACATGTGGATTaGAAATACCCATGCTTTTGT | + |
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Preference number: 2 (lower is better) Translates to: STTEHTGSSLVTEPHIKQHAHVD*KYPCFC Trigger: ACAAAAGCATGGGTATTTCCAATCCACATGTGCATG...TTGCTTTATATGAGGTTCAGTCACCAGAGAAGAGCCTGTGTGCTCTGTAGTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
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| 3UTR-3UTR CCA 90 bp | GCCACAGACACCACCATGGCTGTAAAGCTCCTTTGTGTTTTCAAACAACATAATATCTCTACTGACTCCTaGAAGAACTTCTGTGGTTAC | + |
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Preference number: 2 (lower is better) Translates to: ATDTTMAVKLLCVFKQHNISTDS*KNFCGY Trigger: GTAACCACAGAAGTTCTTCCAGGAGTCAGTAGAGAT...ATTATGTTGTTTGAAAACACAAAGGAGCTTTACAGCCATGGTGGTGTCTGTGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR-3UTR CCA 90 bp | TATACATTATCTACTACAGAGCACACAGGCTCTTCTCTGGTGACTGAACCTCATATCTCTACTGACTCCTaGAAGAACTTCTGTGGTTAC | + |
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Preference number: 2 (lower is better) Translates to: YTLSTTEHTGSSLVTEPHISTDS*KNFCGY Trigger: GTAACCACAGAAGTTCTTCCAGGAGTCAGTAGAGAT...ATGAGGTTCAGTCACCAGAGAAGAGCCTGTGTGCTCTGTAGTAGATAATGTATA 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
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| 3UTR-3UTR TCA 90 bp | CTTAAGAGACGTGGTGCCCATGCAAGATCAGAGATTGTTATCAAAATAATCAACACCACTGAAATAATCTaGGGAACACCATCCCCCAAA | + |
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Preference number: 2 (lower is better) Translates to: LKRRGAHARSEIVIKIINTTEII*GTPSPK Trigger: TTTGGGGGATGGTGTTCCTCAGATTATTTCAGTGGT...GTTGATTATTTTGATAACAATCTCTGATCTTGCATGGGCACCACGTCTCTTAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
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| 3UTR-3UTR TCA 90 bp | AAGCAAGCCAATTTAAAAACACCCAAACTTTTGCTGACCTTGTTCCTTCGTTATTCAGTGTGTCACCACTaGAATAATCTGAGGAACACC | + |
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Preference number: 2 (lower is better) Translates to: KQANLKTPKLLLTLFLRYSVCHH*NNLRNT Trigger: GGTGTTCCTCAGATTATTTCAGTGGTGACACACTGA...ATAACGAAGGAACAAGGTCAGCAAAAGTTTGGGTGTTTTTAAATTGGCTTGCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
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| 3UTR CAA 90 bp | CTTCAGCTCATTTTTAAAGGATATCCTGTCTTTGACAGCCCATCTTaGTTTAAAGTCAACTTGGGTAAGTTGCAGCCTATCTATCATTTT | + |
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Preference number: 2 (lower is better) Translates to: LQLIFKGYPVFDSPS*FKVNLGKLQPIYHF Trigger: AAAATGATAGATAGGCTGCAACTTACCCAAGTTGACTTTAAACAAAGATGGGCTGTCAAAGACAGGATATCCTTTAAAAATGAGCTGAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR CAA 90 bp | TCTGAATTCTACCTTTTCCTCAATCAAAGAAACATTTTTGGACTATaGTACTTAGTAAATTCCCAAGCAAATCTAGCATGGCCCTGCATG | + |
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Preference number: 2 (lower is better) Translates to: SEFYLFLNQRNIFGL*YLVNSQANLAWPCM Trigger: CATGCAGGGCCATGCTAGATTTGCTTGGGAATTTACTAAGTACAATAGTCCAAAAATGTTTCTTTGATTGAGGAAAAGGTAGAATTCAGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR-3UTR GCA 90 bp | CTTAAGAGACGTGGTGCCCATGCAAGATCAGAGATTGTTATCAAAATAATCAACGATTGGAAATACCCATaGTTTTGTGTATTGTGTGTT | + |
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Preference number: 2 (lower is better) Translates to: LKRRGAHARSEIVIKIINDWKYP*FCVLCV Trigger: AACACACAATACACAAAAGCATGGGTATTTCCAATC...GTTGATTATTTTGATAACAATCTCTGATCTTGCATGGGCACCACGTCTCTTAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
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| 3UTR-3UTR GCA 90 bp | AAGCAAGCCAATTTAAAAACACCCAAACTTTTGCTGACCTTGTTCCTTCGTTATCTGGTTTTTAGACCATaGACATGTGGATTGGAAATA | + |
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Preference number: 2 (lower is better) Translates to: KQANLKTPKLLLTLFLRYLVFRP*TCGLEI Trigger: TATTTCCAATCCACATGTGCATGGTCTAAAAACCAG...ATAACGAAGGAACAAGGTCAGCAAAAGTTTGGGTGTTTTTAAATTGGCTTGCTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
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| 3UTR-3UTR GCA 90 bp | ATTAGGCAAAGTAATAAGACAAGGAAGTTTCTCTGGTTTTTAGACCATGCACATGATTGGAAATACCCATaGTTTTGTGTATTGTGTGTT | + |
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Preference number: 2 (lower is better) Translates to: IRQSNKTRKFLWFLDHAHDWKYP*FCVLCV Trigger: AACACACAATACACAAAAGCATGGGTATTTCCAATC...ATGTGCATGGTCTAAAAACCAGAGAAACTTCCTTGTCTTATTACTTTGCCTAAT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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| 3UTR-3UTR CAA 90 bp | CCACAGACCTCAAGGAACTGCACCCCAGCTCTGCACAGAGTCCCCGACTGCAGCTTCACTACCCTCTCTTaGGATAATGCACTGCACATT | + |
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Preference number: 3 (lower is better) Translates to: PQTSRNCTPALHRVPDCSFTTLS*DNALHI Trigger: AATGTGCAGTGCATTATCCAAAGAGAGGGTAGTGAA...GCTGCAGTCGGGGACTCTGTGCAGAGCTGGGGTGCAGTTCCTTGAGGTCTGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR TCA 72 bp | ACACTGGATGAAGCACAGTCGCTCAGCAGCCACACATaGGCAGGTGAGAACGAAGGGGAATCCTACTCATGG | + |
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Preference number: 3 (lower is better) Translates to: TLDEAQSLSSHT*AGENEGESYSW Trigger: CCATGAGTAGGATTCCCCTTCGTTCTCACCTGCTCATGTGTGGCTGCTGAGCGACTGTGCTTCATCCAGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR TCA 72 bp | ACGTCAACAGGCTTTCACCAAATCACAGTGCACTGCTaGCAGACTGCTGCTGAGAGGACAGCAGGTAAGGGC | + |
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Preference number: 3 (lower is better) Translates to: TSTGFHQITVHC*QTAAERTAGKG Trigger: GCCCTTACCTGCTGTCCTCTCAGCAGCAGTCTGTCAGCAGTGCACTGTGATTTGGTGAAAGCCTGTTGACGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR GCA 72 bp | CAGATGTATAATCCAATACCACAGACCTCAAGGAACTaGACCCCAGCTCTGCACAGAGTCCCCGACTGCAGC | + |
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Preference number: 3 (lower is better) Translates to: QMYNPIPQTSRN*TPALHRVPDCS Trigger: GCTGCAGTCGGGGACTCTGTGCAGAGCTGGGGTGCAGTTCCTTGAGGTCTGTGGTATTGGATTATACATCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR-3UTR CAA 90 bp | CAATACCACAGACCTCAAGGAACTGCACCCCAGCTCTGCACAGAGTCCCCGACTCTTTCTCTCCATTGCTaGGTGCAATGTTTCACATGG | + |
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Preference number: 3 (lower is better) Translates to: QYHRPQGTAPQLCTESPTLSLHC*VQCFTW Trigger: CCATGTGAAACATTGCACCAAGCAATGGAGAGAAAG...AGTCGGGGACTCTGTGCAGAGCTGGGGTGCAGTTCCTTGAGGTCTGTGGTATTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR GCA 72 bp | AATAGAAGACGTCAACAGGCTTTCACCAAATCACAGTaGACTGCTGACAGACTGCTGCTGAGAGGACAGCAG | + |
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Preference number: 3 (lower is better) Translates to: NRRRQQAFTKSQ*TADRLLLRGQQ Trigger: CTGCTGTCCTCTCAGCAGCAGTCTGTCAGCAGTGCACTGTGATTTGGTGAAAGCCTGTTGACGTCTTCTATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR-3UTR CAA 90 bp | GACCCAGCCACAGACACCACCATGGCTGTAAAGCTCCTTTGTGTTTTCAAACAACCATGCACATGTGGATaGGAAATACCCATGCTTTTG | + |
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Preference number: 3 (lower is better) Translates to: DPATDTTMAVKLLCVFKQPCTCG*EIPMLL Trigger: CAAAAGCATGGGTATTTCCAATCCACATGTGCATGG...TTGTTTGAAAACACAAAGGAGCTTTACAGCCATGGTGGTGTCTGTGGCTGGGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR TCA 72 bp | ACGCACCTACACAATACACAAACATCCCTAGAGCAATaGACCGAGCCCCAAATCACAAATCACCAAGCAATC | + |
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Preference number: 3 (lower is better) Translates to: THLHNTQTSLEQ*TEPQITNHQAI Trigger: GATTGCTTGGTGATTTGTGATTTGGGGCTCGGTTCATTGCTCTAGGGATGTTTGTGTATTGTGTAGGTGCGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR TCA 72 bp | ATGGTGTCATGTCCAATGTATAGTCTGAATCTCTACTaGCTCCTGGAAGAACTTCTGTGGTTACTATCGAGC | + |
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Preference number: 3 (lower is better) Translates to: MVSCPMYSLNLY*LLEELLWLLSS Trigger: GCTCGATAGTAACCACAGAAGTTCTTCCAGGAGTCAGTAGAGATTCAGACTATACATTGGACATGACACCAT 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
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| 3UTR CCA 72 bp | CTATTGTACTTAGTAAATTCCCAAGCAAATCTAGCATaGCCCTGCATGGGCAGATGTATAATCCAATACCAC | + |
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Preference number: 3 (lower is better) Translates to: LLYLVNSQANLA*PCMGRCIIQYH Trigger: GTGGTATTGGATTATACATCTGCCCATGCAGGGCCATGCTAGATTTGCTTGGGAATTTACTAAGTACAATAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR CCA 72 bp | AAGTTTCTCTGGTTTTTAGACCATGCACATGTGGATTaGAAATACCCATGCTTTTGTGTATTGTGTGTTTCC | + |
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Preference number: 3 (lower is better) Translates to: KFLWFLDHAHVD*KYPCFCVLCVS Trigger: GGAAACACACAATACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCTAAAAACCAGAGAAACTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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| 3UTR CCA 72 bp | CTGTCTTTGACAGCCCATCTTTGTTTAAAGTCAACTTaGGTAAGTTGCAGCCTATCTATCATTTTGCAATCT | + |
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Preference number: 3 (lower is better) Translates to: LSLTAHLCLKST*VSCSLSIILQS Trigger: AGATTGCAAAATGATAGATAGGCTGCAACTTACCCAAGTTGACTTTAAACAAAGATGGGCTGTCAAAGACAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR TCA 72 bp | ACATACTCATTTCAGTGTGTCACCACTGAAATAATCTaGGGAACACCATCCCCCAAAAATATGGAGAATATT | + |
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Preference number: 3 (lower is better) Translates to: TYSFQCVTTEII*GTPSPKNMENI Trigger: AATATTCTCCATATTTTTGGGGGATGGTGTTCCTCAGATTATTTCAGTGGTGACACACTGAAATGAGTATGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
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| 3UTR TCA 72 bp | ATCTTAAGTCACATACTCATTTCAGTGTGTCACCACTaGAATAATCTGAGGAACACCATCCCCCAAAAATAT | + |
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Preference number: 3 (lower is better) Translates to: ILSHILISVCHH*NNLRNTIPQKY Trigger: ATATTTTTGGGGGATGGTGTTCCTCAGATTATTTCAGTGGTGACACACTGAAATGAGTATGTGACTTAAGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
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| 3UTR GCA 72 bp | ACAGCCCATCTTTGTTTAAAGTCAACTTGGGTAAGTTaGAGCCTATCTATCATTTTGCAATCTAAACTAGTG | + |
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Preference number: 3 (lower is better) Translates to: TAHLCLKSTWVS*SLSIILQSKLV Trigger: CACTAGTTTAGATTGCAAAATGATAGATAGGCTGCAACTTACCCAAGTTGACTTTAAACAAAGATGGGCTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| CDS-3UTR TCA 90 bp | TCTCTGGTTTTTAGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTGCTGGTTGCTGCGGTTaGGGCGGCGTTTGCAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: SLVFRPCTCGLEIPMLLCAGCCG*GGVCSR Trigger: GCGGCTGCAAACGCCGCCTCAACCGCAGCAACCAGC...ACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCTAAAAACCAGAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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| CDS-3UTR GCA 90 bp | AAATCACAGTGCACTGCTGACAGACTGCTGCTGAGAGGACAGCAGGTAAGGGCTCCAGTTATGAAATCCTaGAGCCTGGAGCACATGGAC | + |
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Preference number: 4 (lower is better) Translates to: KSQCTADRLLLRGQQVRAPVMKS*SLEHMD Trigger: GTCCATGTGCTCCAGGCTGCAGGATTTCATAACTGG...AGCCCTTACCTGCTGTCCTCTCAGCAGCAGTCTGTCAGCAGTGCACTGTGATTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| CDS-3UTR TCA 90 bp | CTGGTTTTTAGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGCTGGTTGCTGCGGTTaGGGCGGCGTTTGCAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: LVFRPCTCGLEIPMLLCIAGCCG*GGVCSR Trigger: GCGGCTGCAAACGCCGCCTCAACCGCAGCAACCAGC...AATACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCTAAAAACCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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| CDS-3UTR GCA 90 bp | GACCCAGCCACAGACACCACCATGGCTGTAAAGCTCCTTTGTGTTTTCAAACAAGGACATCACTCCCGTTaGAAACTCTTGCTGGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: DPATDTTMAVKLLCVFKQGHHSR*KLLLGL Trigger: AAGGCCCAGCAAGAGTTTGCAACGGGAGTGATGTCC...TTGTTTGAAAACACAAAGGAGCTTTACAGCCATGGTGGTGTCTGTGGCTGGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| 3UTR CAA 72 bp | TGTCCTCGTGCAGCTCGTCTCATGGCTGCAGTAACATaGGGATTGAATAGAAGACGTCAACAGGCTTTCACC | + |
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Preference number: 4 (lower is better) Translates to: CPRAARLMAAVT*GLNRRRQQAFT Trigger: GGTGAAAGCCTGTTGACGTCTTCTATTCAATCCCAATGTTACTGCAGCCATGAGACGAGCTGCACGAGGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| CDS-3UTR TCA 90 bp | CTCTGGTTTTTAGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTAACATCTGGTTACCCTTaGAGGCGTTCTGCGCCGCGC | + |
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Preference number: 4 (lower is better) Translates to: LWFLDHAHVDWKYPCFCVTSGYP*RRSAPR Trigger: GCGCGGCGCAGAACGCCTTCAAGGGTAACCAGATGT...TACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCTAAAAACCAGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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| CDS-3UTR GCA 90 bp | GCCTGTCCTCGTGCAGCTCGTCTCATGGCTGCAGTAACATTGGGATTGAATAGACGCTGTGAAGAGCGCTaGGATGATTATCATCATGAT | + |
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Preference number: 4 (lower is better) Translates to: ACPRAARLMAAVTLGLNRRCEER*DDYHHD Trigger: ATCATGATGATAATCATCGCAGCGCTCTTCACAGCG...TCTATTCAATCCCAATGTTACTGCAGCCATGAGACGAGCTGCACGAGGACAGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| CDS-3UTR CCA 90 bp | TCTACTACAGAGCACACAGGCTCTTCTCTGGTGACTGAACCTCATATAAAGCAACATTTTCACACTGCCTaGTGGAGGCGTGCGAGAGTC | + |
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Preference number: 4 (lower is better) Translates to: STTEHTGSSLVTEPHIKQHFHTA*WRRARV Trigger: GACTCTCGCACGCCTCCACCAGGCAGTGTGAAAATG...TTGCTTTATATGAGGTTCAGTCACCAGAGAAGAGCCTGTGTGCTCTGTAGTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| CDS-3UTR TCA 90 bp | CTCTGGTTTTTAGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTAGCTCTTCTTGGCGCTTaGGCAGTTCAGCTTGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: LWFLDHAHVDWKYPCFCVALLGA*AVQLEP Trigger: TGGCTCAAGCTGAACTGCTCAAGCGCCAAGAAGAGC...TACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCTAAAAACCAGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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| CDS-3UTR TCA 90 bp | CACACAGGCTCTTCTCTGGTGACTGAACCTCATATAAAGCAAGCCAATTTAAAAGCTCTTCTTGGCGCTTaGGCAGTTCAGCTTGAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: HTGSSLVTEPHIKQANLKALLGA*AVQLEP Trigger: TGGCTCAAGCTGAACTGCTCAAGCGCCAAGAAGAGC...TTTTAAATTGGCTTGCTTTATATGAGGTTCAGTCACCAGAGAAGAGCCTGTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
||
| CDS-3UTR TCA 90 bp | CACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGTGTGTTTCCAACAAAAACATCTGGTTACCCTTaGAGGCGTTCTGCGCCGCGC | + |
|
Preference number: 4 (lower is better) Translates to: HMWIGNTHAFVYCVFPTKTSGYP*RRSAPR Trigger: GCGCGGCGCAGAACGCCTTCAAGGGTAACCAGATGT...TTTTGTTGGAAACACACAATACACAAAAGCATGGGTATTTCCAATCCACATGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR TCA 90 bp | GAGCGCTTTTTAAATCTTAAGTCACATACTCATTTCAGTGTGTCACCACTGAAAACATCTGGTTACCCTTaGAGGCGTTCTGCGCCGCGC | + |
|
Preference number: 4 (lower is better) Translates to: ERFLNLKSHTHFSVSPLKTSGYP*RRSAPR Trigger: GCGCGGCGCAGAACGCCTTCAAGGGTAACCAGATGT...TTTCAGTGGTGACACACTGAAATGAGTATGTGACTTAAGATTTAAAAAGCGCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
||
| CDS-3UTR GCA 90 bp | TGCACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGTGTGTTTCCAACAATGCTGGCTCAGGTTCTaGATCTCGCGCTCACGACGA | + |
|
Preference number: 4 (lower is better) Translates to: CTCGLEIPMLLCIVCFQQCWLRF*ISRSRR Trigger: TCGTCGTGAGCGCGAGATGCAGAACCTGAGCCAGCA...TTGTTGGAAACACACAATACACAAAAGCATGGGTATTTCCAATCCACATGTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR TCA 90 bp | CTGGTTTTTAGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGCTCTTCTTGGCGCTTaGGCAGTTCAGCTTGAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: LVFRPCTCGLEIPMLLCIALLGA*AVQLEP Trigger: TGGCTCAAGCTGAACTGCTCAAGCGCCAAGAAGAGC...AATACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCTAAAAACCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR GCA 90 bp | AAGCAAGCCAATTTAAAAACACCCAAACTTTTGCTGACCTTGTTCCTTCGTTATTGCTGGCTCAGGTTCTaGATCTCGCGCTCACGACGA | + |
|
Preference number: 4 (lower is better) Translates to: KQANLKTPKLLLTLFLRYCWLRF*ISRSRR Trigger: TCGTCGTGAGCGCGAGATGCAGAACCTGAGCCAGCA...ATAACGAAGGAACAAGGTCAGCAAAAGTTTGGGTGTTTTTAAATTGGCTTGCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
||
| CDS-3UTR GCA 90 bp | TCTACTACAGAGCACACAGGCTCTTCTCTGGTGACTGAACCTCATATAAAGCAACCCGTTGCAAACTCTTaGTGGGCCTTCTCAAAACTA | + |
|
Preference number: 4 (lower is better) Translates to: STTEHTGSSLVTEPHIKQPVANS*WAFSKL Trigger: TAGTTTTGAGAAGGCCCAGCAAGAGTTTGCAACGGG...TTGCTTTATATGAGGTTCAGTCACCAGAGAAGAGCCTGTGTGCTCTGTAGTAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
||
| CDS-3UTR CCA 90 bp | TCTCTGGTTTTTAGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTCTCTCCAGCTCTTCTTaGCGCTTGAGCAGTTCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: SLVFRPCTCGLEIPMLLCLSSSS*RLSSSA Trigger: AGCTGAACTGCTCAAGCGCCAAGAAGAGCTGGAGAG...ACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCTAAAAACCAGAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR CCA 90 bp | CTCTGGTTTTTAGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTACTCTCCAGCTCTTCTTaGCGCTTGAGCAGTTCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: LWFLDHAHVDWKYPCFCVLSSSS*RLSSSA Trigger: AGCTGAACTGCTCAAGCGCCAAGAAGAGCTGGAGAG...TACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCTAAAAACCAGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR TCA 90 bp | TCTACTACAGAGCACACAGGCTCTTCTCTGGTGACTGAACCTCATATAAAGCAAAGGCATGTTCCTTTGTaGTCTGTGTGTAAGCTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: STTEHTGSSLVTEPHIKQRHVPL*SVCKLD Trigger: ATCCAGCTTACACACAGATCACAAAGGAACATGCCT...TTGCTTTATATGAGGTTCAGTCACCAGAGAAGAGCCTGTGTGCTCTGTAGTAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
||
| CDS-3UTR GCA 90 bp | ATTAGGCAAAGTAATAAGACAAGGAAGTTTCTCTGGTTTTTAGACCATGCACATTGCTGGCTCAGGTTCTaGATCTCGCGCTCACGACGA | + |
|
Preference number: 4 (lower is better) Translates to: IRQSNKTRKFLWFLDHAHCWLRF*ISRSRR Trigger: TCGTCGTGAGCGCGAGATGCAGAACCTGAGCCAGCA...ATGTGCATGGTCTAAAAACCAGAGAAACTTCCTTGTCTTATTACTTTGCCTAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR TCA 90 bp | GAGACGTGGTGCCCATGCAAGATCAGAGATTGTTATCAAAATAATCAACTAGTCTTGAGCAGTTCAGCTTaGGCCAAGGCATGTTCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: ETWCPCKIRDCYQNNQLVLSSSA*AKACSF Trigger: AAAGGAACATGCCTTGGCTCAAGCTGAACTGCTCAA...GACTAGTTGATTATTTTGATAACAATCTCTGATCTTGCATGGGCACCACGTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
||
| CDS-3UTR GCA 90 bp | CACACAGGCTCTTCTCTGGTGACTGAACCTCATATAAAGCAAGCCAATTTAAAACCCGTTGCAAACTCTTaGTGGGCCTTCTCAAAACTA | + |
|
Preference number: 4 (lower is better) Translates to: HTGSSLVTEPHIKQANLKPVANS*WAFSKL Trigger: TAGTTTTGAGAAGGCCCAGCAAGAGTTTGCAACGGG...TTTTAAATTGGCTTGCTTTATATGAGGTTCAGTCACCAGAGAAGAGCCTGTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
||
| CDS-3UTR GCA 90 bp | AGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGTGTGTTTCCCCGTTGCAAACTCTTaGTGGGCCTTCTCAAAACTA | + |
|
Preference number: 4 (lower is better) Translates to: RPCTCGLEIPMLLCIVCFPVANS*WAFSKL Trigger: TAGTTTTGAGAAGGCCCAGCAAGAGTTTGCAACGGG...GAAACACACAATACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR GCA 90 bp | GAGCGCTTTTTAAATCTTAAGTCACATACTCATTTCAGTGTGTCACCACTGAAAGGACATCACTCCCGTTaGAAACTCTTGCTGGGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: ERFLNLKSHTHFSVSPLKGHHSR*KLLLGL Trigger: AAGGCCCAGCAAGAGTTTGCAACGGGAGTGATGTCC...TTTCAGTGGTGACACACTGAAATGAGTATGTGACTTAAGATTTAAAAAGCGCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
||
| CDS-3UTR GCA 90 bp | CACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGTGTGTTTCCAACAAAAGGACATCACTCCCGTTaGAAACTCTTGCTGGGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: HMWIGNTHAFVYCVFPTKGHHSR*KLLLGL Trigger: AAGGCCCAGCAAGAGTTTGCAACGGGAGTGATGTCC...TTTTGTTGGAAACACACAATACACAAAAGCATGGGTATTTCCAATCCACATGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR TCA 90 bp | AGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGTGTGTTTCAGGCATGTTCCTTTGTaGTCTGTGTGTAAGCTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: RPCTCGLEIPMLLCIVCFRHVPL*SVCKLD Trigger: ATCCAGCTTACACACAGATCACAAAGGAACATGCCT...GAAACACACAATACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR TCA 90 bp | TGGTTTTTAGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGTTGAGCAGTTCAGCTTaGGCCAAGGCATGTTCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: WFLDHAHVDWKYPCFCVLLSSSA*AKACSF Trigger: AAAGGAACATGCCTTGGCTCAAGCTGAACTGCTCAA...CAATACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCTAAAAACCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR GCA 90 bp | CACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGTGTGTTTCCAACAAAACCAGTTATGAAATCCTaGAGCCTGGAGCACATGGAC | + |
|
Preference number: 4 (lower is better) Translates to: HMWIGNTHAFVYCVFPTKPVMKS*SLEHMD Trigger: GTCCATGTGCTCCAGGCTGCAGGATTTCATAACTGG...TTTTGTTGGAAACACACAATACACAAAAGCATGGGTATTTCCAATCCACATGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR CCA 90 bp | ATTAGGCAAAGTAATAAGACAAGGAAGTTTCTCTGGTTTTTAGACCATGCACATCTCTCCAGCTCTTCTTaGCGCTTGAGCAGTTCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: IRQSNKTRKFLWFLDHAHLSSSS*RLSSSA Trigger: AGCTGAACTGCTCAAGCGCCAAGAAGAGCTGGAGAG...ATGTGCATGGTCTAAAAACCAGAGAAACTTCCTTGTCTTATTACTTTGCCTAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR CCA 90 bp | TATACATTATCTACTACAGAGCACACAGGCTCTTCTCTGGTGACTGAACCTCATAGCTTCACCGTCTTCTaGAATTCTACAGGAATGTCA | + |
|
Preference number: 4 (lower is better) Translates to: YTLSTTEHTGSSLVTEPHSFTVF*NSTGMS Trigger: TGACATTCCTGTAGAATTCCAGAAGACGGTGAAGCT...ATGAGGTTCAGTCACCAGAGAAGAGCCTGTGTGCTCTGTAGTAGATAATGTATA 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
||
| CDS-3UTR TCA 90 bp | TGGTTTTTAGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGAGGCATGTTCCTTTGTaGTCTGTGTGTAAGCTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: WFLDHAHVDWKYPCFCVLRHVPL*SVCKLD Trigger: ATCCAGCTTACACACAGATCACAAAGGAACATGCCT...CAATACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCTAAAAACCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR TCA 90 bp | TCCAAACTACAACAGTCTGCCTTACAAATGTTCTTGAGACAGCTAATCAGCATTTTTGCAGCCGCTGTCTaGACAGTTTTATTGGACATC | + |
|
Preference number: 4 (lower is better) Translates to: SKLQQSALQMFLRQLISIFAAAV*TVLLDI Trigger: GATGTCCAATAAAACTGTTCAGACAGCGGCTGCAAA...AATGCTGATTAGCTGTCTCAAGAACATTTGTAAGGCAGACTGTTGTAGTTTGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
||
| CDS-3UTR GCA 90 bp | CTGGTTTTTAGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTATTCGCTGTGAAGAGCGCTaGGATGATTATCATCATGAT | + |
|
Preference number: 4 (lower is better) Translates to: LVFRPCTCGLEIPMLLCIRCEER*DDYHHD Trigger: ATCATGATGATAATCATCGCAGCGCTCTTCACAGCG...AATACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCTAAAAACCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR TCA 90 bp | CACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGTGTGTTTCCAACAAAATTTGCAGCCGCTGTCTaGACAGTTTTATTGGACATC | + |
|
Preference number: 4 (lower is better) Translates to: HMWIGNTHAFVYCVFPTKFAAAV*TVLLDI Trigger: GATGTCCAATAAAACTGTTCAGACAGCGGCTGCAAA...TTTTGTTGGAAACACACAATACACAAAAGCATGGGTATTTCCAATCCACATGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR CCA 90 bp | ATTTCACTTAAGAGACGTGGTGCCCATGCAAGATCAGAGATTGTTATCAAAATAGTTGCAAACTCTTGCTaGGCCTTCTCAAAACTAGCA | + |
|
Preference number: 4 (lower is better) Translates to: ISLKRRGAHARSEIVIKIVANSC*AFSKLA Trigger: TGCTAGTTTTGAGAAGGCCCAGCAAGAGTTTGCAAC...TATTTTGATAACAATCTCTGATCTTGCATGGGCACCACGTCTCTTAAGTGAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
||
| CDS-3UTR GCA 90 bp | ACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGTGTGTTTCCAACAAAAACGCTGTGAAGAGCGCTaGGATGATTATCATCATGAT | + |
|
Preference number: 4 (lower is better) Translates to: TCGLEIPMLLCIVCFQQKRCEER*DDYHHD Trigger: ATCATGATGATAATCATCGCAGCGCTCTTCACAGCG...TTTTTGTTGGAAACACACAATACACAAAAGCATGGGTATTTCCAATCCACATGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR CCA 90 bp | ATTAGGCAAAGTAATAAGACAAGGAAGTTTCTCTGGTTTTTAGACCATGCACATGTTGCAAACTCTTGCTaGGCCTTCTCAAAACTAGCA | + |
|
Preference number: 4 (lower is better) Translates to: IRQSNKTRKFLWFLDHAHVANSC*AFSKLA Trigger: TGCTAGTTTTGAGAAGGCCCAGCAAGAGTTTGCAAC...ATGTGCATGGTCTAAAAACCAGAGAAACTTCCTTGTCTTATTACTTTGCCTAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| 3UTR CAA 72 bp | GAAGTTTCTCTGGTTTTTAGACCATGCACATGTGGATaGGAAATACCCATGCTTTTGTGTATTGTGTGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: EVSLVFRPCTCG*EIPMLLCIVCF Trigger: GAAACACACAATACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCTAAAAACCAGAGAAACTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| 3UTR CAA 72 bp | ATTTTTAAAGGATATCCTGTCTTTGACAGCCCATCTTaGTTTAAAGTCAACTTGGGTAAGTTGCAGCCTATC | + |
|
Preference number: 4 (lower is better) Translates to: IFKGYPVFDSPS*FKVNLGKLQPI Trigger: GATAGGCTGCAACTTACCCAAGTTGACTTTAAACAAAGATGGGCTGTCAAAGACAGGATATCCTTTAAAAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
||
| 3UTR CAA 72 bp | ACTCACTTCAGCTCATTTTTAAAGGATATCCTGTCTTaGACAGCCCATCTTTGTTTAAAGTCAACTTGGGTA | + |
|
Preference number: 4 (lower is better) Translates to: THFSSFLKDILS*TAHLCLKSTWV Trigger: TACCCAAGTTGACTTTAAACAAAGATGGGCTGTCAAAGACAGGATATCCTTTAAAAATGAGCTGAAGTGAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
||
| CDS-3UTR CAA 90 bp | CCACAGACCTCAAGGAACTGCACCCCAGCTCTGCACAGAGTCCCCGACTGCAGCGGGTCCTTGAACGGGTaGTTGAGATCCGGATCCGCA | + |
|
Preference number: 5 (lower is better) Translates to: PQTSRNCTPALHRVPDCSGSLNG*LRSGSA Trigger: TGCGGATCCGGATCTCAACAACCCGTTCAAGGACCC...GCTGCAGTCGGGGACTCTGTGCAGAGCTGGGGTGCAGTTCCTTGAGGTCTGTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
||
| CDS-3UTR CAA 90 bp | ATGCAACATGAGAGGGCCACATGGAGGGCGTTTACACAGAACCGTGACATACCACGCTGGTTGCTGCGGTaGAGGCGGCGTTTGCAGCCG | + |
|
Preference number: 5 (lower is better) Translates to: MQHERATWRAFTQNRDIPRWLLR*RRRLQP Trigger: CGGCTGCAAACGCCGCCTCAACCGCAGCAACCAGCG...TGGTATGTCACGGTTCTGTGTAAACGCCCTCCATGTGGCCCTCTCATGTTGCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
||
| CDS TCA 90 bp | GCCGCGCTGGTTGCTGCGGTTGAGGCGGCGTTTGCAGCCGCTGTCTaGACAGTTTTATTGGACATCACTCCCGTTGCAAACTCTTGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: AALVAAVEAAFAAAV*TVLLDITPVANSCW Trigger: CCAGCAAGAGTTTGCAACGGGAGTGATGTCCAATAAAACTGTTCAGACAGCGGCTGCAAACGCCGCCTCAACCGCAGCAACCAGCGCGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS TCA 90 bp | CTGGTTACCCTTGAAGGCGTTCTGCGCCGCGCTGGTTGCTGCGGTTaGGGCGGCGTTTGCAGCCGCTGTCTGAACAGTTTTATTGGACAT | + |
|
Preference number: 5 (lower is better) Translates to: LVTLEGVLRRAGCCG*GGVCSRCLNSFIGH Trigger: ATGTCCAATAAAACTGTTCAGACAGCGGCTGCAAACGCCGCCTCAACCGCAGCAACCAGCGCGGCGCAGAACGCCTTCAAGGGTAACCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS CCA 90 bp | CTGCGGTTGAGGCGGCGTTTGCAGCCGCTGTCTGAACAGTTTTATTaGACATCACTCCCGTTGCAAACTCTTGCTGGGCCTTCTCAAAAC | + |
|
Preference number: 5 (lower is better) Translates to: LRLRRRLQPLSEQFY*TSLPLQTLAGPSQN Trigger: GTTTTGAGAAGGCCCAGCAAGAGTTTGCAACGGGAGTGATGTCCAATAAAACTGTTCAGACAGCGGCTGCAAACGCCGCCTCAACCGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR CAA 90 bp | GCCTGTCCTCGTGCAGCTCGTCTCATGGCTGCAGTAACATTGGGATTGAATAGACCGACTGGAATGTTCTaGTTGAGACCAGTGAGGGAC | + |
|
Preference number: 5 (lower is better) Translates to: ACPRAARLMAAVTLGLNRPTGMF*LRPVRD Trigger: GTCCCTCACTGGTCTCAACAAGAACATTCCAGTCGG...TCTATTCAATCCCAATGTTACTGCAGCCATGAGACGAGCTGCACGAGGACAGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
||
| CDS-3UTR CAA 90 bp | GAGACGTGGTGCCCATGCAAGATCAGAGATTGTTATCAAAATAATCAACTAGTCCGCTGGTTGCTGCGGTaGAGGCGGCGTTTGCAGCCG | + |
|
Preference number: 5 (lower is better) Translates to: ETWCPCKIRDCYQNNQLVRWLLR*RRRLQP Trigger: CGGCTGCAAACGCCGCCTCAACCGCAGCAACCAGCG...GACTAGTTGATTATTTTGATAACAATCTCTGATCTTGCATGGGCACCACGTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
||
| CDS-3UTR CAA 90 bp | ACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGTGTGTTTCCAACAAAAACGCTGGTTGCTGCGGTaGAGGCGGCGTTTGCAGCCG | + |
|
Preference number: 5 (lower is better) Translates to: TCGLEIPMLLCIVCFQQKRWLLR*RRRLQP Trigger: CGGCTGCAAACGCCGCCTCAACCGCAGCAACCAGCG...TTTTTGTTGGAAACACACAATACACAAAAGCATGGGTATTTCCAATCCACATGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR CAA 90 bp | GAGACGTGGTGCCCATGCAAGATCAGAGATTGTTATCAAAATAATCAACTAGTCTACATCTGGTTACCCTaGAAGGCGTTCTGCGCCGCG | + |
|
Preference number: 5 (lower is better) Translates to: ETWCPCKIRDCYQNNQLVYIWLP*KAFCAA Trigger: CGCGGCGCAGAACGCCTTCAAGGGTAACCAGATGTA...GACTAGTTGATTATTTTGATAACAATCTCTGATCTTGCATGGGCACCACGTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
||
| CDS-3UTR CAA 90 bp | TCTCTGGTTTTTAGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTTACATCTGGTTACCCTaGAAGGCGTTCTGCGCCGCG | + |
|
Preference number: 5 (lower is better) Translates to: SLVFRPCTCGLEIPMLLCYIWLP*KAFCAA Trigger: CGCGGCGCAGAACGCCTTCAAGGGTAACCAGATGTA...ACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCTAAAAACCAGAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR CAA 90 bp | AGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGTGTGTTTCGGTCCCACGGGAAAATaGCTAGGAAGAGGAGGCCAA | + |
|
Preference number: 5 (lower is better) Translates to: RPCTCGLEIPMLLCIVCFGPTGK*LGRGGQ Trigger: TTGGCCTCCTCTTCCTAGCAATTTTCCCGTGGGACC...GAAACACACAATACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
||
| CDS-3UTR CAA 90 bp | CACACAGGCTCTTCTCTGGTGACTGAACCTCATATAAAGCAAGCCAATTTAAAAGGTCCCACGGGAAAATaGCTAGGAAGAGGAGGCCAA | + |
|
Preference number: 5 (lower is better) Translates to: HTGSSLVTEPHIKQANLKGPTGK*LGRGGQ Trigger: TTGGCCTCCTCTTCCTAGCAATTTTCCCGTGGGACC...TTTTAAATTGGCTTGCTTTATATGAGGTTCAGTCACCAGAGAAGAGCCTGTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
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| CDS-3UTR CAA 90 bp | TCTCTGGTTTTTAGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTGGTCCCACGGGAAAATaGCTAGGAAGAGGAGGCCAA | + |
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Preference number: 5 (lower is better) Translates to: SLVFRPCTCGLEIPMLLCGPTGK*LGRGGQ Trigger: TTGGCCTCCTCTTCCTAGCAATTTTCCCGTGGGACC...ACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCTAAAAACCAGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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| CDS-3UTR CAA 90 bp | TCTACTACAGAGCACACAGGCTCTTCTCTGGTGACTGAACCTCATATAAAGCAAACTGGAATGTTCTTGTaGAGACCAGTGAGGGACGAG | + |
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Preference number: 5 (lower is better) Translates to: STTEHTGSSLVTEPHIKQTGMFL*RPVRDE Trigger: CTCGTCCCTCACTGGTCTCAACAAGAACATTCCAGT...TTGCTTTATATGAGGTTCAGTCACCAGAGAAGAGCCTGTGTGCTCTGTAGTAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
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| CDS-3UTR CAA 90 bp | CTTAAGAGACGTGGTGCCCATGCAAGATCAGAGATTGTTATCAAAATAATCAACTACATCTGGTTACCCTaGAAGGCGTTCTGCGCCGCG | + |
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Preference number: 5 (lower is better) Translates to: LKRRGAHARSEIVIKIINYIWLP*KAFCAA Trigger: CGCGGCGCAGAACGCCTTCAAGGGTAACCAGATGTA...GTTGATTATTTTGATAACAATCTCTGATCTTGCATGGGCACCACGTCTCTTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
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| CDS-3UTR CAA 90 bp | AGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGTGTGTTTCCCGACTGGAATGTTCTaGTTGAGACCAGTGAGGGAC | + |
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Preference number: 5 (lower is better) Translates to: RPCTCGLEIPMLLCIVCFPTGMF*LRPVRD Trigger: GTCCCTCACTGGTCTCAACAAGAACATTCCAGTCGG...GAAACACACAATACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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| CDS-3UTR CAA 90 bp | AGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGTGTGTTTCCTTGAGCAGTTCAGCTaGAGCCAAGGCATGTTCCTT | + |
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Preference number: 5 (lower is better) Translates to: RPCTCGLEIPMLLCIVCFLEQFS*SQGMFL Trigger: AAGGAACATGCCTTGGCTCAAGCTGAACTGCTCAAG...GAAACACACAATACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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| CDS-3UTR CAA 90 bp | CTCTGGTTTTTAGACCATGCACATGTGGATTGGAAATACCCATGCTTTTGTGTAATTGCTGGCTGGGTGTaGGGTACATTAGGCATTTTC | + |
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Preference number: 5 (lower is better) Translates to: LWFLDHAHVDWKYPCFCVIAGWV*GTLGIF Trigger: GAAAATGCCTAATGTACCCAACACCCAGCCAGCAAT...TACACAAAAGCATGGGTATTTCCAATCCACATGTGCATGGTCTAAAAACCAGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| CDS-3UTR CAA 90 bp | CCTCATATAAAGCAAGCCAATTTAAAAACACCCAAACTTTTGCTGACCTTGTTCCCGACTGGAATGTTCTaGTTGAGACCAGTGAGGGAC | + |
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Preference number: 5 (lower is better) Translates to: PHIKQANLKTPKLLLTLFPTGMF*LRPVRD Trigger: GTCCCTCACTGGTCTCAACAAGAACATTCCAGTCGG...GAACAAGGTCAGCAAAAGTTTGGGTGTTTTTAAATTGGCTTGCTTTATATGAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
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| CDS-3UTR CAA 90 bp | CCTCATATAAAGCAAGCCAATTTAAAAACACCCAAACTTTTGCTGACCTTGTTCCTTGAGCAGTTCAGCTaGAGCCAAGGCATGTTCCTT | + |
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Preference number: 5 (lower is better) Translates to: PHIKQANLKTPKLLLTLFLEQFS*SQGMFL Trigger: AAGGAACATGCCTTGGCTCAAGCTGAACTGCTCAAG...GAACAAGGTCAGCAAAAGTTTGGGTGTTTTTAAATTGGCTTGCTTTATATGAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 |
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| CDS-3UTR CAA 90 bp | CACATGTGGATTGGAAATACCCATGCTTTTGTGTATTGTGTGTTTCCAACAAAAACTGGAATGTTCTTGTaGAGACCAGTGAGGGACGAG | + |
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Preference number: 5 (lower is better) Translates to: HMWIGNTHAFVYCVFPTKTGMFL*RPVRDE Trigger: CTCGTCCCTCACTGGTCTCAACAAGAACATTCCAGT...TTTTGTTGGAAACACACAATACACAAAAGCATGGGTATTTCCAATCCACATGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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| CDS-3UTR CAA 90 bp | AAACTACAACAGTCTGCCTTACAAATGTTCTTGAGACAGCTAATCAGCATTAAACTTGAGCAGTTCAGCTaGAGCCAAGGCATGTTCCTT | + |
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Preference number: 5 (lower is better) Translates to: KLQQSALQMFLRQLISIKLEQFS*SQGMFL Trigger: AAGGAACATGCCTTGGCTCAAGCTGAACTGCTCAAG...TTTAATGCTGATTAGCTGTCTCAAGAACATTTGTAAGGCAGACTGTTGTAGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| CDS-3UTR CAA 90 bp | ATTAGGCAAAGTAATAAGACAAGGAAGTTTCTCTGGTTTTTAGACCATGCACATACTGGAATGTTCTTGTaGAGACCAGTGAGGGACGAG | + |
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Preference number: 5 (lower is better) Translates to: IRQSNKTRKFLWFLDHAHTGMFL*RPVRDE Trigger: CTCGTCCCTCACTGGTCTCAACAAGAACATTCCAGT...ATGTGCATGGTCTAAAAACCAGAGAAACTTCCTTGTCTTATTACTTTGCCTAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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| CDS TCA 72 bp | CTTGAAGGCGTTCTGCGCCGCGCTGGTTGCTGCGGTTaGGGCGGCGTTTGCAGCCGCTGTCTGAACAGTTTT | + |
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Preference number: 6 (lower is better) Translates to: LEGVLRRAGCCG*GGVCSRCLNSF Trigger: AAAACTGTTCAGACAGCGGCTGCAAACGCCGCCTCAACCGCAGCAACCAGCGCGGCGCAGAACGCCTTCAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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| CDS GCA 72 bp | CAGGTTCTGCATCTCGCGCTCACGACGATCCAACTCTaGAGCTTTTCTCTCCAGCTCTTCTTGGCGCTTGAG | + |
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Preference number: 6 (lower is better) Translates to: QVLHLALTTIQL*SFSLQLFLALE Trigger: CTCAAGCGCCAAGAAGAGCTGGAGAGAAAAGCTGCAGAGTTGGATCGTCGTGAGCGCGAGATGCAGAACCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000022197.15 ENSMUST00000138255.2 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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| CDS CAA 90 bp | AGTCCCGGTGGCACATTTCTTGTCACCTGTGTGACAGATGGGTCCTaGAACGGGTTGTTGAGATCCGGATCCGCAAACGGGTTGCTGTCA | + |
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Preference number: 6 (lower is better) Translates to: SPGGTFLVTCVTDGS*NGLLRSGSANGLLS Trigger: TGACAGCAACCCGTTTGCGGATCCGGATCTCAACAACCCGTTCAAGGACCCATCTGTCACACAGGTGACAAGAAATGTGCCACCGGGACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| CDS TCA 72 bp | GTTGCTGCGGTTGAGGCGGCGTTTGCAGCCGCTGTCTaGACAGTTTTATTGGACATCACTCCCGTTGCAAAC | + |
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Preference number: 6 (lower is better) Translates to: VAAVEAAFAAAV*TVLLDITPVAN Trigger: GTTTGCAACGGGAGTGATGTCCAATAAAACTGTTCAGACAGCGGCTGCAAACGCCGCCTCAACCGCAGCAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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| CDS CCA 72 bp | AGGCGGCGTTTGCAGCCGCTGTCTGAACAGTTTTATTaGACATCACTCCCGTTGCAAACTCTTGCTGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: RRRLQPLSEQFY*TSLPLQTLAGP Trigger: AGGCCCAGCAAGAGTTTGCAACGGGAGTGATGTCCAATAAAACTGTTCAGACAGCGGCTGCAAACGCCGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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| CDS CAA 72 bp | CTTGTCACCTGTGTGACAGATGGGTCCTTGAACGGGTaGTTGAGATCCGGATCCGCAAACGGGTTGCTGTCA | + |
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Preference number: 6 (lower is better) Translates to: LVTCVTDGSLNG*LRSGSANGLLS Trigger: TGACAGCAACCCGTTTGCGGATCCGGATCTCAACAACCCGTTCAAGGACCCATCTGTCACACAGGTGACAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| CDS CAA 72 bp | GGCACATTTCTTGTCACCTGTGTGACAGATGGGTCCTaGAACGGGTTGTTGAGATCCGGATCCGCAAACGGG | + |
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Preference number: 6 (lower is better) Translates to: GTFLVTCVTDGS*NGLLRSGSANG Trigger: CCCGTTTGCGGATCCGGATCTCAACAACCCGTTCAAGGACCCATCTGTCACACAGGTGACAAGAAATGTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| CDS CAA 72 bp | GTCACCTGTGTGACAGATGGGTCCTTGAACGGGTTGTaGAGATCCGGATCCGCAAACGGGTTGCTGTCAAAA | + |
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Preference number: 6 (lower is better) Translates to: VTCVTDGSLNGL*RSGSANGLLSK Trigger: TTTTGACAGCAACCCGTTTGCGGATCCGGATCTCAACAACCCGTTCAAGGACCCATCTGTCACACAGGTGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| CDS CAA 90 bp | GGCACATTTCTTGTCACCTGTGTGACAGATGGGTCCTTGAACGGGTaGTTGAGATCCGGATCCGCAAACGGGTTGCTGTCAAAATCCGAC | + |
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Preference number: 6 (lower is better) Translates to: GTFLVTCVTDGSLNG*LRSGSANGLLSKSD Trigger: GTCGGATTTTGACAGCAACCCGTTTGCGGATCCGGATCTCAACAACCCGTTCAAGGACCCATCTGTCACACAGGTGACAAGAAATGTGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| CDS CCA 72 bp | AGAGTCGGAGAAAGGGTTGTATTCATCAAGTCCCGGTaGCACATTTCTTGTCACCTGTGTGACAGATGGGTC | + |
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Preference number: 6 (lower is better) Translates to: RVGERVVFIKSR*HISCHLCDRWV Trigger: GACCCATCTGTCACACAGGTGACAAGAAATGTGCCACCGGGACTTGATGAATACAACCCTTTCTCCGACTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022197.15 |
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| CDS GCA 72 bp | ACAGTTTTATTGGACATCACTCCCGTTGCAAACTCTTaGTGGGCCTTCTCAAAACTAGCACCTGTTGTGCGG | + |
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Preference number: 6 (lower is better) Translates to: TVLLDITPVANS*WAFSKLAPVVR Trigger: CCGCACAACAGGTGCTAGTTTTGAGAAGGCCCAGCAAGAGTTTGCAACGGGAGTGATGTCCAATAAAACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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| CDS CCA 72 bp | GTTTTATTGGACATCACTCCCGTTGCAAACTCTTGCTaGGCCTTCTCAAAACTAGCACCTGTTGTGCGGTAC | + |
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Preference number: 6 (lower is better) Translates to: VLLDITPVANSC*AFSKLAPVVRY Trigger: GTACCGCACAACAGGTGCTAGTTTTGAGAAGGCCCAGCAAGAGTTTGCAACGGGAGTGATGTCCAATAAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000022197.15 ENSMUST00000152555.8 ENSMUST00000153558.8 |
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