RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SCAF4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022983

Ensembl transcript IDs: ENSMUST00000039280.9, ENSMUST00000163419.9, ENSMUST00000232371.2

Found 436 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGAAAGCAATCAAATTGCTTACAATCCCCACCAACTACTGTGGGATaGTGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATG +
Preference number: 1 (lower is better)
Translates to: GKQSNCLQSPPTTVG*CSRSGYYTASVHLM
Trigger: CATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATTGTAAGCAATTTGATTGCTTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
3UTR TCA 72 bp TCAAATTGCTTACAATCCCCACCAACTACTGTGGGATaGTGTAGCAGGAGCGGATATTATACAGCATCTGTA +
Preference number: 3 (lower is better)
Translates to: SNCLQSPPTTVG*CSRSGYYTASV
Trigger: TACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATTGTAAGCAATTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
3UTR CCA 72 bp AGCAATCAAATTGCTTACAATCCCCACCAACTACTGTaGGATGATGTAGCAGGAGCGGATATTATACAGCAT +
Preference number: 3 (lower is better)
Translates to: SNQIAYNPHQLL*DDVAGADIIQH
Trigger: ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATTGTAAGCAATTTGATTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACAGGAGGGCCCGGCTaGTGGGGCGGGACCTGTGGA +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYTGGPG*WGGTCG
Trigger: TCCACAGGTCCCGCCCCATCAGCCGGGCCCTCCTGT...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCACAGGAGGGCCCGGCTaGTGGGGCGGGACCTGTGGA +
Preference number: 4 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTTGGPG*WGGTCG
Trigger: TCCACAGGTCCCGCCCCATCAGCCGGGCCCTCCTGT...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATACAGGAGGGCCCGGCTaGTGGGGCGGGACCTGTGGA +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHTGGPG*WGGTCG
Trigger: TCCACAGGTCCCGCCCCATCAGCCGGGCCCTCCTGT...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTGTGGCTGCAGTGGGTaGAGGAGGCGCAGCCGTGGC +
Preference number: 4 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQCGCSG*RRRSRG
Trigger: GCCACGGCTGCGCCTCCTGCACCCACTGCAGCCACA...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACCAGGTGTGGCTGCAGTaGGTGCAGGAGGCGCAGCCG +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYQVWLQ*VQEAQP
Trigger: CGGCTGCGCCTCCTGCACCCACTGCAGCCACACCTG...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCCAGGTGTGGCTGCAGTaGGTGCAGGAGGCGCAGCCG +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPQVWLQ*VQEAQP
Trigger: CGGCTGCGCCTCCTGCACCCACTGCAGCCACACCTG...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCGGGTGGGCAGACTCGTaGGTGCAGCAGGTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVGWADS*VQQVAQ
Trigger: CTGGGCCACCTGCTGCACCCACGAGTCTGCCCACCC...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCGGGTGGGCAGACTCGTaGGTGCAGCAGGTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTGWADS*VQQVAQ
Trigger: CTGGGCCACCTGCTGCACCCACGAGTCTGCCCACCC...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACAAGCCGTGGCAAGGGCTaGGGTGCTGATGGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTSRGKG*GADGCS
Trigger: GCTGCAGCCATCAGCACCGCAGCCCTTGCCACGGCT...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCAGCCGTGGCAAGGGCTaGGGTGCTGATGGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVSRGKG*GADGCS
Trigger: GCTGCAGCCATCAGCACCGCAGCCCTTGCCACGGCT...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACAGCCGTGGCAAGGGCTaGGGTGCTGATGGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYSRGKG*GADGCS
Trigger: GCTGCAGCCATCAGCACCGCAGCCCTTGCCACGGCT...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCGGGCAGACTCGTGGGTaGAGCAGGTGGCCCAGCAGA +
Preference number: 4 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTGQTRG*SRWPSR
Trigger: TCTGCTGGGCCACCTGCTGCACCCACGAGTCTGCCC...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATGGGCAGACTCGTGGGTaGAGCAGGTGGCCCAGCAGA +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHGQTRG*SRWPSR
Trigger: TCTGCTGGGCCACCTGCTGCACCCACGAGTCTGCCC...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCGGGCAGACTCGTGGGTaGAGCAGGTGGCCCAGCAGA +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVGQTRG*SRWPSR
Trigger: TCTGCTGGGCCACCTGCTGCACCCACGAGTCTGCCC...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACAGACTGCTGTGGTGGCTaGTGCTGCGGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTDCCGG*CCGCCC
Trigger: GCAGCAGCAGCCGCAGCAGCAGCCACCACAGCAGTC...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCAGGTGTGGCTGCAGTaGGTGCAGGAGGCGCAGCCG +
Preference number: 4 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHQVWLQ*VQEAQP
Trigger: CGGCTGCGCCTCCTGCACCCACTGCAGCCACACCTG...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACTCCCCGGCTGAGGCATaGCAGGCTGAGGCATGGCAG +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYSPAEA*QAEAWQ
Trigger: CTGCCATGCCTCAGCCTGCCATGCCTCAGCCGGGGA...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCGCGCAGGAACAGGGATaGGAGGGACCGGCACAGGCA +
Preference number: 4 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVAQEQG*EGPAQA
Trigger: TGCCTGTGCCGGTCCCTCCCATCCCTGTTCCTGCGC...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATGGTGGAGGCATCCCTaGGGGGCGCTGGAGTGGGAT +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTWWRHP*GALEWD
Trigger: ATCCCACTCCAGCGCCCCCCAGGGATGCCTCCACCA...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTGCCCCCTGGTCCTGGTaGTGGCCCCCTGTGCATCAT +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCAPWSW*WPPVHH
Trigger: ATGATGCACAGGGGGCCACCACCAGGACCAGGGGGC...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATGCCCCCTGGTCCTGGTaGTGGCCCCCTGTGCATCAT +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHAPWSW*WPPVHH
Trigger: ATGATGCACAGGGGGCCACCACCAGGACCAGGGGGC...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGCATGGCAAAGCCCCCTaGTCCTGGTGGTGGCCCCCT +
Preference number: 4 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQHGKAP*SWWWPP
Trigger: AGGGGGCCACCACCAGGACCAGGGGGCTTTGCCATG...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCTGCGGCATCCCCGGCTaGGGCATGGGAGGAAATGGA +
Preference number: 4 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVCGIPG*GMGGNG
Trigger: TCCATTTCCTCCCATGCCTCAGCCGGGGATGCCGCA...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTAGATCGAGAGCGAGGTaGGTGTCGGCGCCTGTCCCT +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCRSRAR*VSAPVP
Trigger: AGGGACAGGCGCCGACACTCACCTCGCTCTCGATCT...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCAGATCGAGAGCGAGGTaGGTGTCGGCGCCTGTCCCT +
Preference number: 4 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTRSRAR*VSAPVP
Trigger: AGGGACAGGCGCCGACACTCACCTCGCTCTCGATCT...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTTCCTAAGGGAGGGGTaGAAGCGGGCGGCTGGAGAG +
Preference number: 4 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQFLREG*KRAAGE
Trigger: CTCTCCAGCCGCCCGCTTTCACCCCTCCCTTAGGAA...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACCCCCTGTGCATCATGTaGGGTGGCATGGGCCGAGGT +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYPLCIM*GGMGRG
Trigger: ACCTCGGCCCATGCCACCTCACATGATGCACAGGGG...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCCCCCTGTGCATCATGTaGGGTGGCATGGGCCGAGGT +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVPLCIM*GGMGRG
Trigger: ACCTCGGCCCATGCCACCTCACATGATGCACAGGGG...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCAGGAGGCTCTGCTGCTaGGCCAGGATCCTTCTCGGG +
Preference number: 4 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVRRLCC*ARILLG
Trigger: CCCGAGAAGGATCCTGGCTCAGCAGCAGAGCCTCCT...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACATGTGGCTGCAGTGGGTaGAGGAGGCGCAGCCGTGGC +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTCGCSG*RRRSRG
Trigger: GCCACGGCTGCGCCTCCTGCACCCACTGCAGCCACA...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAACAGCAGGTGTGGCTaGAGTGGGTGCAGGAGGCGC +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPNSRCG*SGCRRR
Trigger: GCGCCTCCTGCACCCACTGCAGCCACACCTGCTGTT...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGAACAGCAGGTGTGGCTaGAGTGGGTGCAGGAGGCGC +
Preference number: 4 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQNSRCG*SGCRRR
Trigger: GCGCCTCCTGCACCCACTGCAGCCACACCTGCTGTT...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACGCACAGGCACAGCCGTaGCAACAGCAGGTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYAQAQP*QQQVWL
Trigger: CAGCCACACCTGCTGTTGCCACGGCTGTGCCTGTGC...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCGCACAGGCACAGCCGTaGCAACAGCAGGTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVAQAQP*QQQVWL
Trigger: CAGCCACACCTGCTGTTGCCACGGCTGTGCCTGTGC...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCTGGCAGGCTGAGGCATaGCAGGCTGAGGCATCCCAG +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPWQAEA*QAEASQ
Trigger: CTGGGATGCCTCAGCCTGCCATGCCTCAGCCTGCCA...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCTCCCCGGCTGAGGCATaGCAGGCTGAGGCATGGCAG +
Preference number: 4 (lower is better)
Translates to: RILYSICTPHVLHPSVTVSPAEA*QAEAWQ
Trigger: CTGCCATGCCTCAGCCTGCCATGCCTCAGCCGGGGA...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTGCGCAGGAACAGGGATaGGAGGGACCGGCACAGGCA +
Preference number: 4 (lower is better)
Translates to: WDDVAGADIIQHLYTSCSAQEQG*EGPAQA
Trigger: TGCCTGTGCCGGTCCCTCCCATCCCTGTTCCTGCGC...AGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGGGTGGGCAGACTCGTaGGTGCAGCAGGTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: YTASVHLMFYTQVSLSHSGWADS*VQQVAQ
Trigger: CTGGGCCACCTGCTGCACCCACGAGTCTGCCCACCC...AGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATGGGTTACAGGAGGGGTaGGCAGACTCGTGGGTGCAG +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHGLQEG*ADSWVQ
Trigger: CTGCACCCACGAGTCTGCCCACCCCTCCTGTAACCC...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGGGGTTACAGGAGGGGTaGGCAGACTCGTGGGTGCAG +
Preference number: 4 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQGLQEG*ADSWVQ
Trigger: CTGCACCCACGAGTCTGCCCACCCCTCCTGTAACCC...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTGGTGGAGGCATCCCTaGGGGGCGCTGGAGTGGGAT +
Preference number: 4 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILWWRHP*GALEWD
Trigger: ATCCCACTCCAGCGCCCCCCAGGGATGCCTCCACCA...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACCCCTGGTCCTGGTGGTaGCCCCCTGTGCATCATGTG +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYPWSWW*PPVHHV
Trigger: CACATGATGCACAGGGGGCCACCACCAGGACCAGGG...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGGCCCCCTGGTCCTGGTaGTGGCCCCCTGTGCATCAT +
Preference number: 4 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILAPWSW*WPPVHH
Trigger: ATGATGCACAGGGGGCCACCACCAGGACCAGGGGGC...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCATGGCAAAGCCCCCTaGTCCTGGTGGTGGCCCCCT +
Preference number: 4 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHHGKAP*SWWWPP
Trigger: AGGGGGCCACCACCAGGACCAGGGGGCTTTGCCATG...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTCAAGGGCTGCGGTGCTaGTGGCTGCAGCATCCTCTT +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCQGLRC*WLQHPL
Trigger: AAGAGGATGCTGCAGCCATCAGCACCGCAGCCCTTG...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACCAAGGGCTGCGGTGCTaGTGGCTGCAGCATCCTCTT +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYQGLRC*WLQHPL
Trigger: AAGAGGATGCTGCAGCCATCAGCACCGCAGCCCTTG...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTTCCTAAGGGAGGGGTaGAAGCGGGCGGCTGGAGAG +
Preference number: 4 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILFLREG*KRAAGE
Trigger: CTCTCCAGCCGCCCGCTTTCACCCCTCCCTTAGGAA...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCAGGAGGCTCTGCTGCTaGGCCAGGATCCTTCTCGGG +
Preference number: 4 (lower is better)
Translates to: RILYSICTPHVLHPSVTVRRLCC*ARILLG
Trigger: CCCGAGAAGGATCCTGGCTCAGCAGCAGAGCCTCCT...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGAGGAGGCTCTGCTGCTaGGCCAGGATCCTTCTCGGG +
Preference number: 4 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILRRLCC*ARILLG
Trigger: CCCGAGAAGGATCCTGGCTCAGCAGCAGAGCCTCCT...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTGTGGCTGCAGTGGGTaGAGGAGGCGCAGCCGTGGC +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHCGCSG*RRRSRG
Trigger: GCCACGGCTGCGCCTCCTGCACCCACTGCAGCCACA...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATGCTGTGGCGGTGGCTaGTGCTGTGGTTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTCCGGG*CCGCCC
Trigger: GCAGCAACAACCACAGCAGCAGCCACCGCCACAGCA...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACTGCTGTGGCGGTGGCTaGTGCTGTGGTTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYCCGGG*CCGCCC
Trigger: GCAGCAACAACCACAGCAGCAGCCACCGCCACAGCA...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACAGACTGCTGTGGTGGCTaGTGCTGCGGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTDCCGG*CCGCCC
Trigger: GCAGCAGCAGCCGCAGCAGCAGCCACCACAGCAGTC...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCTGGCAACAGCAGGTGTaGCTGCAGTGGGTGCAGGAG +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVWQQQV*LQWVQE
Trigger: CTCCTGCACCCACTGCAGCCACACCTGCTGTTGCCA...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATGCACAGGCACAGCCGTaGCAACAGCAGGTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHAQAQP*QQQVWL
Trigger: CAGCCACACCTGCTGTTGCCACGGCTGTGCCTGTGC...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACCCCAAATGGGGTCTGTaGAGGAGGGGGAGAGGTAGC +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYPKWGL*RRGRGS
Trigger: GCTACCTCTCCCCCTCCTCCACAGACCCCATTTGGG...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTCCCAAATGGGGTCTGTaGAGGAGGGGGAGAGGTAGC +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCPKWGL*RRGRGS
Trigger: GCTACCTCTCCCCCTCCTCCACAGACCCCATTTGGG...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCCAGGGTACCCAAATaGGGTCTGTGGAGGAGGGGG +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCSRVPK*GLWRRG
Trigger: CCCCCTCCTCCACAGACCCCATTTGGGTACCCTGGA...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCCCGGCTGAGGCATaGGAGGAAATGGAGGTGGTG +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTSPAEA*EEMEVV
Trigger: CACCACCTCCATTTCCTCCCATGCCTCAGCCGGGGA...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCTCCCCGGCTGAGGCATaGGAGGAAATGGAGGTGGTG +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPSPAEA*EEMEVV
Trigger: CACCACCTCCATTTCCTCCCATGCCTCAGCCGGGGA...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATAGGCTGAGGCATCCCTaGCTGAGGCATCCCTGGCTG +
Preference number: 4 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHRLRHP*LRHPWL
Trigger: CAGCCAGGGATGCCTCAGCCAGGGATGCCTCAGCCT...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCATCCCCGGCTGAGGCATaGCAGGCTGAGGCATGGCAG +
Preference number: 4 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSSPAEA*QAEAWQ
Trigger: CTGCCATGCCTCAGCCTGCCATGCCTCAGCCGGGGA...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGCGCAGGAACAGGGATaGGAGGGACCGGCACAGGCA +
Preference number: 4 (lower is better)
Translates to: YTASVHLMFYTQVSLSHSAQEQG*EGPAQA
Trigger: TGCCTGTGCCGGTCCCTCCCATCCCTGTTCCTGCGC...AGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCTGGGCGCAAAAATGGTaGAGGAGGAGGGGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPWAQKW*RRRGRR
Trigger: CCTCCTCCCCCTCCTCCTCCACCATTTTTGCGCCCA...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATTGGGCGCAAAAATGGTaGAGGAGGAGGGGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHWAQKW*RRRGRR
Trigger: CCTCCTCCCCCTCCTCCTCCACCATTTTTGCGCCCA...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACTCCTGGGCGCAAAAATaGTGGAGGAGGAGGGGGAGG +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYSWAQK*WRRRGR
Trigger: CCTCCCCCTCCTCCTCCACCATTTTTGCGCCCAGGA...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTAGCAGTGACACAGGCTaGGTTACAGGAGGGGTGGGC +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCSSDTG*VTGGVG
Trigger: GCCCACCCCTCCTGTAACCCAGCCTGTGTCACTGCT...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATAGCAGTGACACAGGCTaGGTTACAGGAGGGGTGGGC +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHSSDTG*VTGGVG
Trigger: GCCCACCCCTCCTGTAACCCAGCCTGTGTCACTGCT...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCCCGGTAGAGGGTGCCTaGAGCCCAATTACAGGACCC +
Preference number: 4 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTPVEGA*SPITGP
Trigger: GGGTCCTGTAATTGGGCTCCAGGCACCCTCTACCGG...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACATGGTGGAGGCATCCCTaGGGGGCGCTGGAGTGGGAT +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTWWRHP*GALEWD
Trigger: ATCCCACTCCAGCGCCCCCCAGGGATGCCTCCACCA...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCCCCTGGTCCTGGTGGTaGCCCCCTGTGCATCATGTG +
Preference number: 4 (lower is better)
Translates to: RILYSICTPHVLHPSVTVPWSWW*PPVHHV
Trigger: CACATGATGCACAGGGGGCCACCACCAGGACCAGGG...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGCCCTGGTCCTGGTGGTaGCCCCCTGTGCATCATGTG +
Preference number: 4 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILPWSWW*PPVHHV
Trigger: CACATGATGCACAGGGGGCCACCACCAGGACCAGGG...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATGGCAAAGCCCCCTaGTCCTGGTGGTGGCCCCCT +
Preference number: 4 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSHGKAP*SWWWPP
Trigger: AGGGGGCCACCACCAGGACCAGGGGGCTTTGCCATG...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp TATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTTGCGGCATCCCCGGCTaGGGCATGGGAGGAAATGGA +
Preference number: 4 (lower is better)
Translates to: YTASVHLMFYTQVSLSHSCGIPG*GMGGNG
Trigger: TCCATTTCCTCCCATGCCTCAGCCGGGGATGCCGCA...AGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACAAGATCGAGAGCGAGGTaGGTGTCGGCGCCTGTCCCT +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTRSRAR*VSAPVP
Trigger: AGGGACAGGCGCCGACACTCACCTCGCTCTCGATCT...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACATTCCTAAGGGAGGGGTaGAAGCGGGCGGCTGGAGAG +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTFLREG*KRAAGE
Trigger: CTCTCCAGCCGCCCGCTTTCACCCCTCCCTTAGGAA...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACCCCTGTGCATCATGTaGGGTGGCATGGGCCGAGGT +
Preference number: 4 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSPLCIM*GGMGRG
Trigger: ACCTCGGCCCATGCCACCTCACATGATGCACAGGGG...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCGGCCCTTTCATTCCATaGGGTGGGGGCATGGCAAAG +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVGPFIP*GGGMAK
Trigger: CTTTGCCATGCCCCCACCTCATGGAATGAAAGGGCC...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACGGCCCTTTCATTCCATaGGGTGGGGGCATGGCAAAG +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYGPFIP*GGGMAK
Trigger: CTTTGCCATGCCCCCACCTCATGGAATGAAAGGGCC...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCTGTGTGTATGCTGGCTaGTGCACGCCATCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPCVYAG*CTPSPG
Trigger: CCCTGGAGATGGCGTGCAGCAGCCAGCATACACACA...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCTGTGGCGGTGGCTGCTaGTGTGGTTGTTGCTGCCTT +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVCGGGC*CGCCCL
Trigger: AAGGCAGCAACAACCACAGCAGCAGCCACCGCCACA...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTGTGGCGGTGGCTGCTaGTGTGGTTGTTGCTGCCTT +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCCGGGC*CGCCCL
Trigger: AAGGCAGCAACAACCACAGCAGCAGCCACCGCCACA...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATTGCTGTGGCGGTGGCTaGTGCTGTGGTTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHCCGGG*CCGCCC
Trigger: GCAGCAACAACCACAGCAGCAGCCACCGCCACAGCA...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATTGCTGTGATGGTGACTaGTGTGGTGGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHCCDGD*CGGCCC
Trigger: GCAGCAGCAGCCACCACAGCAGTCACCATCACAGCA...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTGCTGTGATGGTGACTaGTGTGGTGGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTCCDGD*CGGCCC
Trigger: GCAGCAGCAGCCACCACAGCAGTCACCATCACAGCA...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCTTCCAAGTCTCTGTaGCTGTCCCGGTCAGGGCTC +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTSSKSL*LSRSGL
Trigger: GAGCCCTGACCGGGACAGGCACAGAGACTTGGAAGA...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCTGGCAACAGCAGGTGTaGCTGCAGTGGGTGCAGGAG +
Preference number: 4 (lower is better)
Translates to: RILYSICTPHVLHPSVTVWQQQV*LQWVQE
Trigger: CTCCTGCACCCACTGCAGCCACACCTGCTGTTGCCA...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCTCCCCGGCTGAGGCATaGGAGGAAATGGAGGTGGTG +
Preference number: 4 (lower is better)
Translates to: RILYSICTPHVLHPSVTVSPAEA*EEMEVV
Trigger: CACCACCTCCATTTCCTCCCATGCCTCAGCCGGGGA...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTAGGCTGAGGCATCCCTaGCTGAGGCATCCCTGGCTG +
Preference number: 4 (lower is better)
Translates to: YTASVHLMFYTQVSLSHSRLRHP*LRHPWL
Trigger: CAGCCAGGGATGCCTCAGCCAGGGATGCCTCAGCCT...AGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCATGGGGCGGGACCTGTaGAGGTGGCACTGTTATAGG +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPMGRDL*RWHCYR
Trigger: CCTATAACAGTGCCACCTCCACAGGTCCCGCCCCAT...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGATGGGGCGGGACCTGTaGAGGTGGCACTGTTATAGG +
Preference number: 4 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQMGRDL*RWHCYR
Trigger: CCTATAACAGTGCCACCTCCACAGGTCCCGCCCCAT...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCTGGGCGCAAAAATGGTaGAGGAGGAGGGGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: RILYSICTPHVLHPSVTVWAQKW*RRRGRR
Trigger: CCTCCTCCCCCTCCTCCTCCACCATTTTTGCGCCCA...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCCTGGGCGCAAAAATaGTGGAGGAGGAGGGGGAGG +
Preference number: 4 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILSWAQK*WRRRGR
Trigger: CCTCCCCCTCCTCCTCCACCATTTTTGCGCCCAGGA...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACAGGGTTACAGGAGGGGTaGGCAGACTCGTGGGTGCAG +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTGLQEG*ADSWVQ
Trigger: CTGCACCCACGAGTCTGCCCACCCCTCCTGTAACCC...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACGTGCATCATGTGAGGTaGCATGGGCCGAGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYVHHVR*HGPRWH
Trigger: ATGCCACCTCGGCCCATGCCACCTCACATGATGCAC...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCGGTGGCTGCTGCTGTaGTTGTTGCTGCCTTCCATC +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHRWLLL*LLLPSI
Trigger: GATGGAAGGCAGCAACAACCACAGCAGCAGCCACCG...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCCGGTGGCTGCTGCTGTaGTTGTTGCTGCCTTCCATC +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVRWLLL*LLLPSI
Trigger: GATGGAAGGCAGCAACAACCACAGCAGCAGCCACCG...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCTACTGGGGGTGGAGGTaGGCCTTCATTGTTGGTGAC +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVYWGWR*AFIVGD
Trigger: GTCACCAACAATGAAGGCTCACCTCCACCCCCAGTA...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCGGAGGAAGTGGAACCTaGTGGTGCATCGTATCCTGC +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPGGSGT*WCIVSC
Trigger: GCAGGATACGATGCACCATCAGGTTCCACTTCCTCC...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCGGAGGAAGTGGAACCTaGTGGTGCATCGTATCCTGC +
Preference number: 4 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVGGSGT*WCIVSC
Trigger: GCAGGATACGATGCACCATCAGGTTCCACTTCCTCC...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATGGAGGAAGTGGAACCTaGTGGTGCATCGTATCCTGC +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHGGSGT*WCIVSC
Trigger: GCAGGATACGATGCACCATCAGGTTCCACTTCCTCC...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACACGATCCCGTCTTTCTTaGGATCGAGAGCGAGGTGAG +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTRSRLS*DRERGE
Trigger: CTCACCTCGCTCTCGATCTCAAGAAAGACGGGATCG...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACGTTTCTGACTTGATCTaGGGGAGGCCTTTCTGCCGC +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYVSDLI*GRPFCR
Trigger: GCGGCAGAAAGGCCTCCCTCAGATCAAGTCAGAAAC...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp TGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTGGCCCTTTCATTCCATaGGGTGGGGGCATGGCAAAG +
Preference number: 4 (lower is better)
Translates to: WDDVAGADIIQHLYTSCSGPFIP*GGGMAK
Trigger: CTTTGCCATGCCCCCACCTCATGGAATGAAAGGGCC...AGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATAACAGCAGGTGTGGCTaGAGTGGGTGCAGGAGGCGC +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHNSRCG*SGCRRR
Trigger: GCGCCTCCTGCACCCACTGCAGCCACACCTGCTGTT...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCTGTGTGTATGCTGGCTaGTGCACGCCATCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: RILYSICTPHVLHPSVTVCVYAG*CTPSPG
Trigger: CCCTGGAGATGGCGTGCAGCAGCCAGCATACACACA...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCCCTCGGCTCAGTTTCTaGAGGGCACGGTATGCATCT +
Preference number: 4 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVPRLSF*RARYAS
Trigger: AGATGCATACCGTGCCCTGCAGAAACTGAGCCGAGG...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTGCTGTGATGGTGACTaGTGTGGTGGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILCCDGD*CGGCCC
Trigger: GCAGCAGCAGCCACCACAGCAGTCACCATCACAGCA...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCTCTTCCAAGTCTCTGTaGCTGTCCCGGTCAGGGCTC +
Preference number: 4 (lower is better)
Translates to: RILYSICTPHVLHPSVTVSSKSL*LSRSGL
Trigger: GAGCCCTGACCGGGACAGGCACAGAGACTTGGAAGA...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACAGCTTTGTTACCACCTaGCCTGTCTGCCACCTCGTG +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYSFVTT*PVCHLV
Trigger: CACGAGGTGGCAGACAGGGCAGGTGGTAACAAAGCT...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTAGCTTTGTTACCACCTaGCCTGTCTGCCACCTCGTG +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCSFVTT*PVCHLV
Trigger: CACGAGGTGGCAGACAGGGCAGGTGGTAACAAAGCT...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATAGCTTTGTTACCACCTaGCCTGTCTGCCACCTCGTG +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHSFVTT*PVCHLV
Trigger: CACGAGGTGGCAGACAGGGCAGGTGGTAACAAAGCT...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCAGTGAGAAGAGCTCCTaGTTGAAGGCGTTGACGGCG +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVSEKSS*LKALTA
Trigger: CGCCGTCAACGCCTTCAACCAGGAGCTCTTCTCACT...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTTCCAGGGTACCCAAATaGGGTCTGTGGAGGAGGGGG +
Preference number: 4 (lower is better)
Translates to: YTASVHLMFYTQVSLSHSSRVPK*GLWRRG
Trigger: CCCCCTCCTCCACAGACCCCATTTGGGTACCCTGGA...AGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGATGCTGTGTGTATGCTaGCTGCTGCACGCCATCTCC +
Preference number: 4 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQMLCVC*LLHAIS
Trigger: GGAGATGGCGTGCAGCAGCCAGCATACACACAGCAT...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTATGCTGTGTGTATGCTaGCTGCTGCACGCCATCTCC +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCMLCVC*LLHAIS
Trigger: GGAGATGGCGTGCAGCAGCCAGCATACACACAGCAT...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATAGGCTGAGGCATCCCTaGCTGAGGCATCCCTGGCTG +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHRLRHP*LRHPWL
Trigger: CAGCCAGGGATGCCTCAGCCAGGGATGCCTCAGCCT...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTGGCAGGCTGAGGCATaGCAGGCTGAGGCATCCCAG +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHWQAEA*QAEASQ
Trigger: CTGGGATGCCTCAGCCTGCCATGCCTCAGCCTGCCA...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCAGTTGGCTGTACTGGTaGAGCTGGAGAAACCCCAGG +
Preference number: 4 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVSWLYW*SWRNPR
Trigger: CCTGGGGTTTCTCCAGCTCCACCAGTACAGCCAACT...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCATCCTGGGCGCAAAAATaGTGGAGGAGGAGGGGGAGG +
Preference number: 4 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSSWAQK*WRRRGR
Trigger: CCTCCCCCTCCTCCTCCACCATTTTTGCGCCCAGGA...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACAAGCAGTGACACAGGCTaGGTTACAGGAGGGGTGGGC +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTSSDTG*VTGGVG
Trigger: GCCCACCCCTCCTGTAACCCAGCCTGTGTCACTGCT...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTCCGGTAGAGGGTGCCTaGAGCCCAATTACAGGACCC +
Preference number: 4 (lower is better)
Translates to: YTASVHLMFYTQVSLSHSPVEGA*SPITGP
Trigger: GGGTCCTGTAATTGGGCTCCAGGCACCCTCTACCGG...AGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTCGGTGGCTGCTGCTGTaGTTGTTGCTGCCTTCCATC +
Preference number: 4 (lower is better)
Translates to: WDDVAGADIIQHLYTSCSRWLLL*LLLPSI
Trigger: GATGGAAGGCAGCAACAACCACAGCAGCAGCCACCG...AGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCATTTCTAAACTGCGGTaGCTGCTGCTGAGCTGGCGC +
Preference number: 4 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVISKLR*LLLSWR
Trigger: GCGCCAGCTCAGCAGCAGCCACCGCAGTTTAGAAAT...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCTACTGGGGGTGGAGGTaGGCCTTCATTGTTGGTGAC +
Preference number: 4 (lower is better)
Translates to: RILYSICTPHVLHPSVTVYWGWR*AFIVGD
Trigger: GTCACCAACAATGAAGGCTCACCTCCACCCCCAGTA...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATGTTTCTGACTTGATCTaGGGGAGGCCTTTCTGCCGC +
Preference number: 4 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHVSDLI*GRPFCR
Trigger: GCGGCAGAAAGGCCTCCCTCAGATCAAGTCAGAAAC...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCCTTGTCTATGAACCATaGCGATGTAGGCACAGCCCC +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVLVYEP*RCRHSP
Trigger: GGGGCTGTGCCTACATCGTCATGGTTCATAGACAAG...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCCCAGCTCCTCAGCTTTaGCTTTGTCCCACGGAATGT +
Preference number: 4 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTPAPQL*LCPTEC
Trigger: ACATTCCGTGGGACAAAGTCAAAGCTGAGGAGCTGG...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCCCAGCTCCTCAGCTTTaGCTTTGTCCCACGGAATGT +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVPAPQL*LCPTEC
Trigger: ACATTCCGTGGGACAAAGTCAAAGCTGAGGAGCTGG...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTTGTGTGTATGCTGGCTaGTGCACGCCATCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: YTASVHLMFYTQVSLSHSCVYAG*CTPSPG
Trigger: CCCTGGAGATGGCGTGCAGCAGCCAGCATACACACA...AGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCTTGATGCTGTGTGTATaGTGGCTGCTGCACGCCATC +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPLMLCV*WLLHAI
Trigger: GATGGCGTGCAGCAGCCAGCATACACACAGCATCAA...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTTGATGCTGTGTGTATaGTGGCTGCTGCACGCCATC +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCLMLCV*WLLHAI
Trigger: GATGGCGTGCAGCAGCCAGCATACACACAGCATCAA...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATTGATGCTGTGTGTATaGTGGCTGCTGCACGCCATC +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTLMLCV*WLLHAI
Trigger: GATGGCGTGCAGCAGCCAGCATACACACAGCATCAA...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTCCTCGGCTCAGTTTCTaGAGGGCACGGTATGCATCT +
Preference number: 4 (lower is better)
Translates to: WDDVAGADIIQHLYTSCSPRLSF*RARYAS
Trigger: AGATGCATACCGTGCCCTGCAGAAACTGAGCCGAGG...AGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTAAGACCGGTAGAGGGTaGCTGGAGCCCAATTACAGG +
Preference number: 4 (lower is better)
Translates to: WDDVAGADIIQHLYTSCSKTGRG*LEPNYR
Trigger: CCTGTAATTGGGCTCCAGGCACCCTCTACCGGTCTT...AGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACATCTTCCAAGTCTCTGTaGCTGTCCCGGTCAGGGCTC +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTSSKSL*LSRSGL
Trigger: GAGCCCTGACCGGGACAGGCACAGAGACTTGGAAGA...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTCTGTCTCTGTCCCGATaGCCACTAGAGCGTCTACTT +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCLSLSR*PLERLL
Trigger: AAGTAGACGCTCTAGTGGGCATCGGGACAGAGACAG...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACACTGGAGCAGCATTACTaGTTCCTGCTGCCATGTCCA +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTLEQHY*FLLPCP
Trigger: TGGACATGGCAGCAGGAACCAGTAATGCTGCTCCAG...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACCTGGAGCAGCATTACTaGTTCCTGCTGCCATGTCCA +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYLEQHY*FLLPCP
Trigger: TGGACATGGCAGCAGGAACCAGTAATGCTGCTCCAG...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTATGCTGTGTGTATGCTaGCTGCTGCACGCCATCTCC +
Preference number: 4 (lower is better)
Translates to: WDDVAGADIIQHLYTSCSMLCVC*LLHAIS
Trigger: GGAGATGGCGTGCAGCAGCCAGCATACACACAGCAT...AGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCAGTTGGCTGTACTGGTaGAGCTGGAGAAACCCCAGG +
Preference number: 4 (lower is better)
Translates to: RILYSICTPHVLHPSVTVSWLYW*SWRNPR
Trigger: CCTGGGGTTTCTCCAGCTCCACCAGTACAGCCAACT...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATAGTTGGCTGTACTGGTaGAGCTGGAGAAACCCCAGG +
Preference number: 4 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHSWLYW*SWRNPR
Trigger: CCTGGGGTTTCTCCAGCTCCACCAGTACAGCCAACT...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACAATGGGGCGGGACCTGTaGAGGTGGCACTGTTATAGG +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTMGRDL*RWHCYR
Trigger: CCTATAACAGTGCCACCTCCACAGGTCCCGCCCCAT...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCTGGAGTTATAGGAGGTaGGGGTCCAGGAGGAAGGAA +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPWSYRR*GSRRKE
Trigger: TTCCTTCCTCCTGGACCCCCACCTCCTATAACTCCA...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTGGAGTTATAGGAGGTaGGGGTCCAGGAGGAAGGAA +
Preference number: 4 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTWSYRR*GSRRKE
Trigger: TTCCTTCCTCCTGGACCCCCACCTCCTATAACTCCA...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATTGGAGTTATAGGAGGTaGGGGTCCAGGAGGAAGGAA +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHWSYRR*GSRRKE
Trigger: TTCCTTCCTCCTGGACCCCCACCTCCTATAACTCCA...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACAGTGCATCATGTGAGGTaGCATGGGCCGAGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTVHHVR*HGPRWH
Trigger: ATGCCACCTCGGCCCATGCCACCTCACATGATGCAC...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACGATCCCGTCTTTCTTaGGATCGAGAGCGAGGTGAG +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTRSRLS*DRERGE
Trigger: CTCACCTCGCTCTCGATCTCAAGAAAGACGGGATCG...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp TATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTCGATCCCGTCTTTCTTaGGATCGAGAGCGAGGTGAG +
Preference number: 4 (lower is better)
Translates to: YTASVHLMFYTQVSLSHSRSRLS*DRERGE
Trigger: CTCACCTCGCTCTCGATCTCAAGAAAGACGGGATCG...AGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGGCAACATCCTGCTaGGTAGTCCTTTTGTCCAGT +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHLATSC*VVLLSS
Trigger: ACTGGACAAAAGGACTACTCAGCAGGATGTTGCCAG...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCGGTCTCTACCTGAGTTaGACTGCTGCCTGCTATCAT +
Preference number: 4 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTGLYLS*TAACYH
Trigger: ATGATAGCAGGCAGCAGTTCAACTCAGGTAGAGACC...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCTTCTTGGTCTCTACCTaGGTTGAACTGCTGCCTGCT +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVFLVST*VELLPA
Trigger: AGCAGGCAGCAGTTCAACTCAGGTAGAGACCAAGAA...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATTCAGTTCCAAACTGGTaGCGAGACTGTCTCACGATG +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHSVPNW*RDCLTM
Trigger: CATCGTGAGACAGTCTCGGCACCAGTTTGGAACTGA...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCAGTTCCAAACTGGTaGCGAGACTGTCTCACGATG +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCSVPNW*RDCLTM
Trigger: CATCGTGAGACAGTCTCGGCACCAGTTTGGAACTGA...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCTCGGCTCAGTTTCTaGAGGGCACGGTATGCATCT +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTPRLSF*RARYAS
Trigger: AGATGCATACCGTGCCCTGCAGAAACTGAGCCGAGG...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGAATTACAGGACCCGGTaGAACTCCTTGAGTGCCAAG +
Preference number: 4 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQNYRTR*NSLSAK
Trigger: CTTGGCACTCAAGGAGTTGCACCGGGTCCTGTAATT...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCAAAGACCGGTAGAGGGTaGCTGGAGCCCAATTACAGG +
Preference number: 4 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSKTGRG*LEPNYR
Trigger: CCTGTAATTGGGCTCCAGGCACCCTCTACCGGTCTT...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTGTGGCGGTGGCTGCTaGTGTGGTTGTTGCTGCCTT +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHCGGGC*CGCCCL
Trigger: AAGGCAGCAACAACCACAGCAGCAGCCACCGCCACA...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTCTGTCTCTGTCCCGATaGCCACTAGAGCGTCTACTT +
Preference number: 4 (lower is better)
Translates to: WDDVAGADIIQHLYTSCSLSLSR*PLERLL
Trigger: AAGTAGACGCTCTAGTGGGCATCGGGACAGAGACAG...AGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACAAGTGAGAAGAGCTCCTaGTTGAAGGCGTTGACGGCG +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTSEKSS*LKALTA
Trigger: CGCCGTCAACGCCTTCAACCAGGAGCTCTTCTCACT...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCAAGTGAGAAGAGCTCCTaGTTGAAGGCGTTGACGGCG +
Preference number: 4 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSSEKSS*LKALTA
Trigger: CGCCGTCAACGCCTTCAACCAGGAGCTCTTCTCACT...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTGGGAGACTGTGGTTGTaGAGGCTGTTGAAAAGTCTG +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCGRLWL*RLLKSL
Trigger: CAGACTTTTCAACAGCCTCCACAACCACAGTCTCCC...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATAAGGGCGGGAGACTGTaGTTGTGGAGGCTGTTGAAA +
Preference number: 4 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHKGGRL*LWRLLK
Trigger: TTTCAACAGCCTCCACAACCACAGTCTCCCGCCCTT...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGAAGGGCGGGAGACTGTaGTTGTGGAGGCTGTTGAAA +
Preference number: 4 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILKGGRL*LWRLLK
Trigger: TTTCAACAGCCTCCACAACCACAGTCTCCCGCCCTT...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATAGGCATGGGAGGAAATaGAGGTGGTGCAGAAAGAAG +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHRHGRK*RWCRKK
Trigger: CTTCTTTCTGCACCACCTCCATTTCCTCCCATGCCT...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCAGGCATGGGAGGAAATaGAGGTGGTGCAGAAAGAAG +
Preference number: 4 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTRHGRK*RWCRKK
Trigger: CTTCTTTCTGCACCACCTCCATTTCCTCCCATGCCT...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACAACCTGGATGCTGACCTaGATCTCGACTTTCTGCTCT +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTTWMLT*ISTFCS
Trigger: AGAGCAGAAAGTCGAGATCCAGGTCAGCATCCAGGT...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039280.9
CDS-3UTR CCA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCCTTTTTGGTGACCTaGATGCTGACCTGGATCTCG +
Preference number: 4 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTSFLVT*MLTWIS
Trigger: CGAGATCCAGGTCAGCATCCAGGTCACCAAAAAGGA...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039280.9
CDS-3UTR CCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCATTGGGTTGAATCCTaGGCGCAAAAATGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHHWVES*AQKWWR
Trigger: CCTCCACCATTTTTGCGCCCAGGATTCAACCCAATG...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACACATTGGGTTGAATCCTaGGCGCAAAAATGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTHWVES*AQKWWR
Trigger: CCTCCACCATTTTTGCGCCCAGGATTCAACCCAATG...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCAGGAATGGATACTGGTaGAGTTATAGGAGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTRNGYW*SYRRWG
Trigger: CCCCCACCTCCTATAACTCCACCAGTATCCATTCCT...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCAGGAATGGATACTGGTaGAGTTATAGGAGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVRNGYW*SYRRWG
Trigger: CCCCCACCTCCTATAACTCCACCAGTATCCATTCCT...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGGTTTGGGATGCTTATTaGTGGAGTGTGAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQVWDAY*WSVRWR
Trigger: CCTCCACCTCACACTCCACCAATAAGCATCCCAAAC...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACAGTTTGGGATGCTTATTaGTGGAGTGTGAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTVWDAY*WSVRWR
Trigger: CCTCCACCTCACACTCCACCAATAAGCATCCCAAAC...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTAACAAAGGGGCCATGTaGTGGGAAGGGCCCTTTCAT +
Preference number: 4 (lower is better)
Translates to: WDDVAGADIIQHLYTSCSNKGAM*WEGPFH
Trigger: ATGAAAGGGCCCTTCCCACCACATGGCCCCTTTGTT...AGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCAACAAAGGGGCCATGTaGTGGGAAGGGCCCTTTCAT +
Preference number: 4 (lower is better)
Translates to: RILYSICTPHVLHPSVTVNKGAM*WEGPFH
Trigger: ATGAAAGGGCCCTTCCCACCACATGGCCCCTTTGTT...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACAATTTCTAAACTGCGGTaGCTGCTGCTGAGCTGGCGC +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTISKLR*LLLSWR
Trigger: GCGCCAGCTCAGCAGCAGCCACCGCAGTTTAGAAAT...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCTCTATGGTTCCCACTTaGCTAAGGGGAGGTTCCACA +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVSMVPT*LRGGST
Trigger: TGTGGAACCTCCCCTTAGCCAAGTGGGAACCATAGA...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACAAACTGGTCCATACTTTaGTGCTGTGTGTATGCTGGC +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTNWSIL*CCVYAG
Trigger: GCCAGCATACACACAGCATCAAAGTATGGACCAGTT...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATAACTGGTCCATACTTTaGTGCTGTGTGTATGCTGGC +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHNWSIL*CCVYAG
Trigger: GCCAGCATACACACAGCATCAAAGTATGGACCAGTT...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACAACTGGTCCATACTTTaGTGCTGTGTGTATGCTGGC +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYNWSIL*CCVYAG
Trigger: GCCAGCATACACACAGCATCAAAGTATGGACCAGTT...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCTTGCAGTTTCTGACTTaGTCTGAGGGAGGCCTTTCT +
Preference number: 4 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVLQFLT*SEGGLS
Trigger: AGAAAGGCCTCCCTCAGATCAAGTCAGAAACTGCAA...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATTTGCAGTTTCTGACTTaGTCTGAGGGAGGCCTTTCT +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHLQFLT*SEGGLS
Trigger: AGAAAGGCCTCCCTCAGATCAAGTCAGAAACTGCAA...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp TGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTAACACTTGCAGTTTCTaGCTTGATCTGAGGGAGGCC +
Preference number: 4 (lower is better)
Translates to: WDDVAGADIIQHLYTSCSNTCSF*LDLREA
Trigger: GGCCTCCCTCAGATCAAGTCAGAAACTGCAAGTGTT...AGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCCTGGCAACATCCTGCTaGGTAGTCCTTTTGTCCAGT +
Preference number: 4 (lower is better)
Translates to: RILYSICTPHVLHPSVTVLATSC*VVLLSS
Trigger: ACTGGACAAAAGGACTACTCAGCAGGATGTTGCCAG...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACTTGTCTATGAACCATaGCGATGTAGGCACAGCCCC +
Preference number: 4 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSLVYEP*RCRHSP
Trigger: GGGGCTGTGCCTACATCGTCATGGTTCATAGACAAG...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACTTGTCTATGAACCATaGCGATGTAGGCACAGCCCC +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTLVYEP*RCRHSP
Trigger: GGGGCTGTGCCTACATCGTCATGGTTCATAGACAAG...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTTATTGGTGGAGTGTaGGGTGGAGGAATGGATACT +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHLIGGV*GGGMDT
Trigger: AGTATCCATTCCTCCACCTCACACTCCACCAATAAG...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCGGTCTCTACCTGAGTTaGACTGCTGCCTGCTATCAT +
Preference number: 4 (lower is better)
Translates to: RILYSICTPHVLHPSVTVGLYLS*TAACYH
Trigger: ATGATAGCAGGCAGCAGTTCAACTCAGGTAGAGACC...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATGGTCTCTACCTGAGTTaGACTGCTGCCTGCTATCAT +
Preference number: 4 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHGLYLS*TAACYH
Trigger: ATGATAGCAGGCAGCAGTTCAACTCAGGTAGAGACC...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTTCTTGGTCTCTACCTaGGTTGAACTGCTGCCTGCT +
Preference number: 4 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILFLVST*VELLPA
Trigger: AGCAGGCAGCAGTTCAACTCAGGTAGAGACCAAGAA...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCAGTTCCAAACTGGTaGCGAGACTGTCTCACGATG +
Preference number: 4 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILSVPNW*RDCLTM
Trigger: CATCGTGAGACAGTCTCGGCACCAGTTTGGAACTGA...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATATTACTGGTTCCTGCTaGCATGTCCAAAAGAGGCTG +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHITGSC*HVQKRL
Trigger: CAGCCTCTTTTGGACATGGCAGCAGGAACCAGTAAT...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCATTACTGGTTCCTGCTaGCATGTCCAAAAGAGGCTG +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPITGSC*HVQKRL
Trigger: CAGCCTCTTTTGGACATGGCAGCAGGAACCAGTAAT...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAGCATTACTGGTTCCTaGTGCCATGTCCAAAAGAGG +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPSITGS*CHVQKR
Trigger: CCTCTTTTGGACATGGCAGCAGGAACCAGTAATGCT...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTAGCATTACTGGTTCCTaGTGCCATGTCCAAAAGAGG +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCSITGS*CHVQKR
Trigger: CCTCTTTTGGACATGGCAGCAGGAACCAGTAATGCT...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACAGGAAATGGAGGTGGTaGAGAAAGAAGCCCAAATCC +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYRKWRW*RKKPKS
Trigger: GGATTTGGGCTTCTTTCTGCACCACCTCCATTTCCT...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACAAGGAAATGGAGGTGGTaGAGAAAGAAGCCCAAATCC +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTRKWRW*RKKPKS
Trigger: GGATTTGGGCTTCTTTCTGCACCACCTCCATTTCCT...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACACTGCAGGGCACGGTATaGATCTTGTCTATGAACCAT +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTLQGTV*ILSMNH
Trigger: ATGGTTCATAGACAAGATGCATACCGTGCCCTGCAG...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGCTGCAGGGCACGGTATaGATCTTGTCTATGAACCAT +
Preference number: 4 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQLQGTV*ILSMNH
Trigger: ATGGTTCATAGACAAGATGCATACCGTGCCCTGCAG...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCTGTCACTGTCCAGCATaGCTCCTTCACAGAAACTCT +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPCHCPA*LLHRNS
Trigger: AGAGTTTCTGTGAAGGAGGCATGCTGGACAGTGACA...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTGTCACTGTCCAGCATaGCTCCTTCACAGAAACTCT +
Preference number: 4 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTCHCPA*LLHRNS
Trigger: AGAGTTTCTGTGAAGGAGGCATGCTGGACAGTGACA...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGAATTACAGGACCCGGTaGAACTCCTTGAGTGCCAAG +
Preference number: 4 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILNYRTR*NSLSAK
Trigger: CTTGGCACTCAAGGAGTTGCACCGGGTCCTGTAATT...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATAAGACCGGTAGAGGGTaGCTGGAGCCCAATTACAGG +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHKTGRG*LEPNYR
Trigger: CCTGTAATTGGGCTCCAGGCACCCTCTACCGGTCTT...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCTGCTGTGGTTGTTGCTaGCTTCCATCTCTGTCTTCT +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVCCGCC*LPSLSS
Trigger: AGAAGACAGAGATGGAAGGCAGCAACAACCACAGCA...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCTGCTGTGGTTGTTGCTaGCTTCCATCTCTGTCTTCT +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPCCGCC*LPSLSS
Trigger: AGAAGACAGAGATGGAAGGCAGCAACAACCACAGCA...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATTTATCAGTTCCAAACTaGTGCCGAGACTGTCTCACG +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHLSVPN*CRDCLT
Trigger: CGTGAGACAGTCTCGGCACCAGTTTGGAACTGATAA...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGGGGAGACTGTGGTTGTaGAGGCTGTTGAAAAGTCTG +
Preference number: 4 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILGRLWL*RLLKSL
Trigger: CAGACTTTTCAACAGCCTCCACAACCACAGTCTCCC...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACAAAGGGCGGGAGACTGTaGTTGTGGAGGCTGTTGAAA +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTKGGRL*LWRLLK
Trigger: TTTCAACAGCCTCCACAACCACAGTCTCCCGCCCTT...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACAGTCTTCCACAGCTTCTaGCTCGTCATCGTAATCGAA +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTVFHSF*LVIVIE
Trigger: TTCGATTACGATGACGAGCCAGAAGCTGTGGAAGAC...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCGTCTTCCACAGCTTCTaGCTCGTCATCGTAATCGAA +
Preference number: 4 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVVFHSF*LVIVIE
Trigger: TTCGATTACGATGACGAGCCAGAAGCTGTGGAAGAC...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATTCCATTAGGAGGAAGTaGAACCTGATGGTGCATCGT +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHSIRRK*NLMVHR
Trigger: ACGATGCACCATCAGGTTCCACTTCCTCCTAATGGA...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCTCCATTAGGAGGAAGTaGAACCTGATGGTGCATCGT +
Preference number: 4 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVSIRRK*NLMVHR
Trigger: ACGATGCACCATCAGGTTCCACTTCCTCCTAATGGA...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCCATTAGGAGGAAGTaGAACCTGATGGTGCATCGT +
Preference number: 4 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTSIRRK*NLMVHR
Trigger: ACGATGCACCATCAGGTTCCACTTCCTCCTAATGGA...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACAAAGAAGCCCAAATCCTaGCATCTGTCCATTAGGAGG +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTKKPKS*HLSIRR
Trigger: CCTCCTAATGGACAGATGCCAGGATTTGGGCTTCTT...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTTCTGCACCTCCATTCTaGGCAACTTCATTGTCAGGC +
Preference number: 4 (lower is better)
Translates to: WDDVAGADIIQHLYTSCSSAPPF*ATSLSG
Trigger: GCCTGACAATGAAGTTGCCCAGAATGGAGGTGCAGA...AGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCATTGGGTTGAATCCTaGGCGCAAAAATGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHHWVES*AQKWWR
Trigger: CCTCCACCATTTTTGCGCCCAGGATTCAACCCAATG...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTAGGAATGGATACTGGTaGAGTTATAGGAGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: WDDVAGADIIQHLYTSCSRNGYW*SYRRWG
Trigger: CCCCCACCTCCTATAACTCCACCAGTATCCATTCCT...AGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCTGGAGGAATGGATACTaGTGGAGTTATAGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVWRNGY*WSYRRW
Trigger: CCACCTCCTATAACTCCACCAGTATCCATTCCTCCA...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTGGAGGAATGGATACTaGTGGAGTTATAGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQWRNGY*WSYRRW
Trigger: CCACCTCCTATAACTCCACCAGTATCCATTCCTCCA...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCTGGGATGCTTATTGGTaGAGTGTGAGGTGGAGGAAT +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVWDAYW*SVRWRN
Trigger: ATTCCTCCACCTCACACTCCACCAATAAGCATCCCA...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTGGGATGCTTATTGGTaGAGTGTGAGGTGGAGGAAT +
Preference number: 4 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQWDAYW*SVRWRN
Trigger: ATTCCTCCACCTCACACTCCACCAATAAGCATCCCA...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCAAACAAAGGGGCCATGTaGTGGGAAGGGCCCTTTCAT +
Preference number: 4 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSNKGAM*WEGPFH
Trigger: ATGAAAGGGCCCTTCCCACCACATGGCCCCTTTGTT...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCCCCAGACACCAAGTTTaGGATGCTTATTGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVPRHQV*DAYWWS
Trigger: ACTCCACCAATAAGCATCCCAAACTTGGTGTCTGGG...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCCCCAGACACCAAGTTTaGGATGCTTATTGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPPRHQV*DAYWWS
Trigger: ACTCCACCAATAAGCATCCCAAACTTGGTGTCTGGG...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACAGCCTTCATTGTTGGTaGCATTTTCTGCTACTGGAG +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYSLHCW*HFLLLE
Trigger: CTCCAGTAGCAGAAAATGTCACCAACAATGAAGGCT...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAGCCTTCATTGTTGGTaGCATTTTCTGCTACTGGAG +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPSLHCW*HFLLLE
Trigger: CTCCAGTAGCAGAAAATGTCACCAACAATGAAGGCT...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCAGCCTTCATTGTTGGTaGCATTTTCTGCTACTGGAG +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVSLHCW*HFLLLE
Trigger: CTCCAGTAGCAGAAAATGTCACCAACAATGAAGGCT...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACAAACACTTGCAGTTTCTaGCTTGATCTGAGGGAGGCC +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTNTCSF*LDLREA
Trigger: GGCCTCCCTCAGATCAAGTCAGAAACTGCAAGTGTT...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp TATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTAACACTTGCAGTTTCTaGCTTGATCTGAGGGAGGCC +
Preference number: 4 (lower is better)
Translates to: YTASVHLMFYTQVSLSHSNTCSF*LDLREA
Trigger: GGCCTCCCTCAGATCAAGTCAGAAACTGCAAGTGTT...AGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATCCAGCTCCTCAGCTTTaGCTTTGTCCCACGGAATGT +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHPAPQL*LCPTEC
Trigger: ACATTCCGTGGGACAAAGTCAAAGCTGAGGAGCTGG...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCCTTATTGGTGGAGTGTaGGGTGGAGGAATGGATACT +
Preference number: 4 (lower is better)
Translates to: RILYSICTPHVLHPSVTVLIGGV*GGGMDT
Trigger: AGTATCCATTCCTCCACCTCACACTCCACCAATAAG...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCATTCTTGGTCTCTACCTaGGTTGAACTGCTGCCTGCT +
Preference number: 4 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSFLVST*VELLPA
Trigger: AGCAGGCAGCAGTTCAACTCAGGTAGAGACCAAGAA...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCCCCCTTATTAAGTTCTaGGACAGTGTCTATGGTTCC +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVPLIKF*DSVYGS
Trigger: GGAACCATAGACACTGTCTCAGAACTTAATAAGGGG...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTTCTCCTTTTTGGTaGCCTGGATCTCGACTTTCT +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCSSPFW*PGSRLS
Trigger: AGAAAGTCGAGATCCAGGTCACCAAAAAGGAGAAGA...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCTGGTGCATCGTATCCTaGTGTATTGGCATCATTCGA +
Preference number: 4 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVWCIVS*CIGIIR
Trigger: TCGAATGATGCCAATACAGCAGGATACGATGCACCA...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCTGGTGCATCGTATCCTaGTGTATTGGCATCATTCGA +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPWCIVS*CIGIIR
Trigger: TCGAATGATGCCAATACAGCAGGATACGATGCACCA...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCTCTGTAACACAAGGCTaGTCTACTTCCATTTCCTGC +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVSVTQG*STSISC
Trigger: GCAGGAAATGGAAGTAGAGCAGCCTTGTGTTACAGA...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
CDS-3UTR GCA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCAAATTACAGGACCCGGTaGAACTCCTTGAGTGCCAAG +
Preference number: 4 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSNYRTR*NSLSAK
Trigger: CTTGGCACTCAAGGAGTTGCACCGGGTCCTGTAATT...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACACCAAGTTTGGGATaGTTATTGGTGGAGTGTGAG +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYTPSLG*LLVECE
Trigger: CTCACACTCCACCAATAAGCATCCCAAACTTGGTGT...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGACACCAAGTTTGGGATaGTTATTGGTGGAGTGTGAG +
Preference number: 4 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQTPSLG*LLVECE
Trigger: CTCACACTCCACCAATAAGCATCCCAAACTTGGTGT...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATCTGGAGCAGCATTACTaGTTCCTGCTGCCATGTCCA +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHLEQHY*FLLPCP
Trigger: TGGACATGGCAGCAGGAACCAGTAATGCTGCTCCAG...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTGTCTTCCACAGCTTCTaGCTCGTCATCGTAATCGAA +
Preference number: 4 (lower is better)
Translates to: WDDVAGADIIQHLYTSCSVFHSF*LVIVIE
Trigger: TTCGATTACGATGACGAGCCAGAAGCTGTGGAAGAC...AGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGCGTATCCTGCTGTATTaGCATCATTCGAGGCTGAAA +
Preference number: 4 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQRILLY*HHSRLK
Trigger: TTTCAGCCTCGAATGATGCCAATACAGCAGGATACG...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCGTATCCTGCTGTATTaGCATCATTCGAGGCTGAAA +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHRILLY*HHSRLK
Trigger: TTTCAGCCTCGAATGATGCCAATACAGCAGGATACG...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCCGTATCCTGCTGTATTaGCATCATTCGAGGCTGAAA +
Preference number: 4 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVRILLY*HHSRLK
Trigger: TTTCAGCCTCGAATGATGCCAATACAGCAGGATACG...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATAAGAAGCCCAAATCCTaGCATCTGTCCATTAGGAGG +
Preference number: 4 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHKKPKS*HLSIRR
Trigger: CCTCCTAATGGACAGATGCCAGGATTTGGGCTTCTT...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACAGATGCCTTTCCAATCTaGGTTAAGTGTGTCACTGTC +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTDAFPI*VKCVTV
Trigger: GACAGTGACACACTTAACCCAGATTGGAAAGGCATC...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCGATGCCTTTCCAATCTaGGTTAAGTGTGTCACTGTC +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPDAFPI*VKCVTV
Trigger: GACAGTGACACACTTAACCCAGATTGGAAAGGCATC...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTGATGCCTTTCCAATCTaGGTTAAGTGTGTCACTGTC +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCDAFPI*VKCVTV
Trigger: GACAGTGACACACTTAACCCAGATTGGAAAGGCATC...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCATCTGCACCTCCATTCTaGGCAACTTCATTGTCAGGC +
Preference number: 4 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSSAPPF*ATSLSG
Trigger: GCCTGACAATGAAGTTGCCCAGAATGGAGGTGCAGA...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCCCCAGACACCACTGTTaGAATGGGATTTCCAATAGA +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVPRHHC*NGISNR
Trigger: TCTATTGGAAATCCCATTCCAACAGTGGTGTCTGGG...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039280.9
CDS-3UTR CCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACATCTATGGTTCCCACTTaGCTAAGGGGAGGTTCCACA +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTSMVPT*LRGGST
Trigger: TGTGGAACCTCCCCTTAGCCAAGTGGGAACCATAGA...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATTCCTTTTTGGTGACCTaGATCTCGACTTTCTGCTCT +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHSFLVT*ISTFCS
Trigger: AGAGCAGAAAGTCGAGATCCAGGTCACCAAAAAGGA...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTACTTCCATTTCCTGCTaGTGTGGTTTTTGTGAATGG +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCTSISC*CGFCEW
Trigger: CCATTCACAAAAACCACATCAGCAGGAAATGGAAGT...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
CDS-3UTR TCA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCATTGCAGTTTCTGACTTaGTCTGAGGGAGGCCTTTCT +
Preference number: 4 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSLQFLT*SEGGLS
Trigger: AGAAAGGCCTCCCTCAGATCAAGTCAGAAACTGCAA...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATCTGGCAACATCCTGCTaGGTAGTCCTTTTGTCCAGT +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHLATSC*VVLLSS
Trigger: ACTGGACAAAAGGACTACTCAGCAGGATGTTGCCAG...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCAAGCATTACTGGTTCCTaGTGCCATGTCCAAAAGAGG +
Preference number: 4 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSSITGS*CHVQKR
Trigger: CCTCTTTTGGACATGGCAGCAGGAACCAGTAATGCT...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTAGGAAATGGAGGTGGTaGAGAAAGAAGCCCAAATCC +
Preference number: 4 (lower is better)
Translates to: YTASVHLMFYTQVSLSHSRKWRW*RKKPKS
Trigger: GGATTTGGGCTTCTTTCTGCACCACCTCCATTTCCT...AGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTTCTGTAACACAAGGCTaGTCTACTTCCATTTCCTGC +
Preference number: 4 (lower is better)
Translates to: WDDVAGADIIQHLYTSCSSVTQG*STSISC
Trigger: GCAGGAAATGGAAGTAGAGCAGCCTTGTGTTACAGA...AGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
CDS-3UTR GCA 90 bp TATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTTGTCACTGTCCAGCATaGCTCCTTCACAGAAACTCT +
Preference number: 4 (lower is better)
Translates to: YTASVHLMFYTQVSLSHSCHCPA*LLHRNS
Trigger: AGAGTTTCTGTGAAGGAGGCATGCTGGACAGTGACA...AGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCCCTGAGTTGAACTGCTaGCTGCTATCATTTCTAAAC +
Preference number: 4 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPPELNC*LLSFLN
Trigger: GTTTAGAAATGATAGCAGGCAGCAGTTCAACTCAGG...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTCTACCTGAGTTGAACTaGTGCCTGCTATCATTTCTA +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCLPELN*CLLSFL
Trigger: TAGAAATGATAGCAGGCAGCAGTTCAACTCAGGTAG...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTTTATCAGTTCCAAACTaGTGCCGAGACTGTCTCACG +
Preference number: 4 (lower is better)
Translates to: YTASVHLMFYTQVSLSHSLSVPN*CRDCLT
Trigger: CGTGAGACAGTCTCGGCACCAGTTTGGAACTGATAA...AGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATGGGAGACTGTGGTTGTaGAGGCTGTTGAAAAGTCTG +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHGRLWL*RLLKSL
Trigger: CAGACTTTTCAACAGCCTCCACAACCACAGTCTCCC...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTCCCAGGCAATCTTTATaGATTTCTGGTTCACCTTGT +
Preference number: 4 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCPRQSL*ISGSPC
Trigger: ACAAGGTGAACCAGAAATCCATAAAGATTGCCTGGG...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACCCCAGGCAATCTTTATaGATTTCTGGTTCACCTTGT +
Preference number: 4 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYPRQSL*ISGSPC
Trigger: ACAAGGTGAACCAGAAATCCATAAAGATTGCCTGGG...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGCACCTCCATTCTaGGCAACTTCATTGTCAGGC +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHSAPPF*ATSLSG
Trigger: GCCTGACAATGAAGTTGCCCAGAATGGAGGTGCAGA...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACAAGCGATAGTAGAGTTTaGGATGCTTATTGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTSDSRV*DAYWWS
Trigger: ACTCCACCAATAAGCATCCCAAACTCTACTATCGCT...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039280.9
CDS-3UTR CCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTTCCAAACCTTTCTTaGTCTCTACCTGAGTTGAAC +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHLPNLS*SLPELN
Trigger: GTTCAACTCAGGTAGAGACCAAGAAAGGTTTGGAAG...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGACTTCCATTTCCTGCTaGTGTGGTTTTTGTGAATGG +
Preference number: 4 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILTSISC*CGFCEW
Trigger: CCATTCACAAAAACCACATCAGCAGGAAATGGAAGT...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
CDS-3UTR TCA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACCCCTTATTAAGTTCTaGGACAGTGTCTATGGTTCC +
Preference number: 4 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSPLIKF*DSVYGS
Trigger: GGAACCATAGACACTGTCTCAGAACTTAATAAGGGG...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp TATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTCCCCTTATTAAGTTCTaGGACAGTGTCTATGGTTCC +
Preference number: 4 (lower is better)
Translates to: YTASVHLMFYTQVSLSHSPLIKF*DSVYGS
Trigger: GGAACCATAGACACTGTCTCAGAACTTAATAAGGGG...AGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACATCTTCTCCTTTTTGGTaGCCTGGATCTCGACTTTCT +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTSSPFW*PGSRLS
Trigger: AGAAAGTCGAGATCCAGGTCACCAAAAAGGAGAAGA...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATCTGCAGGGCACGGTATaGATCTTGTCTATGAACCAT +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHLQGTV*ILSMNH
Trigger: ATGGTTCATAGACAAGATGCATACCGTGCCCTGCAG...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCCTACCTGAGTTGAACTaGTGCCTGCTATCATTTCTA +
Preference number: 4 (lower is better)
Translates to: RILYSICTPHVLHPSVTVLPELN*CLLSFL
Trigger: TAGAAATGATAGCAGGCAGCAGTTCAACTCAGGTAG...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATAAGAAGCCCAAATCCTaGCATCTGTCCATTAGGAGG +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHKKPKS*HLSIRR
Trigger: CCTCCTAATGGACAGATGCCAGGATTTGGGCTTCTT...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCCAGGCAATCTTTATaGATTTCTGGTTCACCTTGT +
Preference number: 4 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHPRQSL*ISGSPC
Trigger: ACAAGGTGAACCAGAAATCCATAAAGATTGCCTGGG...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTGGAGGAATGGATACTaGTGGAGTTATAGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHWRNGY*WSYRRW
Trigger: CCACCTCCTATAACTCCACCAGTATCCATTCCTCCA...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTGGGATGCTTATTGGTaGAGTGTGAGGTGGAGGAAT +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHWDAYW*SVRWRN
Trigger: ATTCCTCCACCTCACACTCCACCAATAAGCATCCCA...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCATCCTTTTTGGTGACCTaGATCTCGACTTTCTGCTCT +
Preference number: 4 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSSFLVT*ISTFCS
Trigger: AGAGCAGAAAGTCGAGATCCAGGTCACCAAAAAGGA...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCATTTGTGGGAGCTTGTaGAAGTTCAGAAGAGATTTT +
Preference number: 4 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVICGSL*KFRRDF
Trigger: AAAATCTCTTCTGAACTTGCACAAGCTCCCACAAAT...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCATTTGTGGGAGCTTGTaGAAGTTCAGAAGAGATTTT +
Preference number: 4 (lower is better)
Translates to: QERILYSICTPHVLHPSVICGSL*KFRRDF
Trigger: AAAATCTCTTCTGAACTTGCACAAGCTCCCACAAAT...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATATTTGTGGGAGCTTGTaGAAGTTCAGAAGAGATTTT +
Preference number: 4 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHICGSL*KFRRDF
Trigger: AAAATCTCTTCTGAACTTGCACAAGCTCCCACAAAT...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTGGTGCATCGTATCCTaGTGTATTGGCATCATTCGA +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHWCIVS*CIGIIR
Trigger: TCGAATGATGCCAATACAGCAGGATACGATGCACCA...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCTGAGTTGAACTGCTaGCTGCTATCATTTCTAAAC +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTPELNC*LLSFLN
Trigger: GTTTAGAAATGATAGCAGGCAGCAGTTCAACTCAGG...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACTACCTGAGTTGAACTaGTGCCTGCTATCATTTCTA +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTLPELN*CLLSFL
Trigger: TAGAAATGATAGCAGGCAGCAGTTCAACTCAGGTAG...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACTTCCAAACCTTTCTTaGTCTCTACCTGAGTTGAAC +
Preference number: 4 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTLPNLS*SLPELN
Trigger: GTTCAACTCAGGTAGAGACCAAGAAAGGTTTGGAAG...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CCA 90 bp TATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTCTTCCAAACCTTTCTTaGTCTCTACCTGAGTTGAAC +
Preference number: 4 (lower is better)
Translates to: YTASVHLMFYTQVSLSHSLPNLS*SLPELN
Trigger: GTTCAACTCAGGTAGAGACCAAGAAAGGTTTGGAAG...AGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGGGTTCATTTTGTGGCTaGAAAGTTGATTGGAAAGTT +
Preference number: 4 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILGSFCG*KVDWKV
Trigger: AACTTTCCAATCAACTTTTCAGCCACAAAATGAACC...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATGGTTCATTTTGTGGCTaGAAAGTTGATTGGAAAGTT +
Preference number: 4 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHGSFCG*KVDWKV
Trigger: AACTTTCCAATCAACTTTTCAGCCACAAAATGAACC...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR GCA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATCCTGAGTTGAACTGCTaGCTGCTATCATTTCTAAAC +
Preference number: 4 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHPELNC*LLSFLN
Trigger: GTTTAGAAATGATAGCAGGCAGCAGTTCAACTCAGG...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR TCA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCAGGTTCATTTTGTGGCTaGAAAGTTGATTGGAAAGTT +
Preference number: 4 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSGSFCG*KVDWKV
Trigger: AACTTTCCAATCAACTTTTCAGCCACAAAATGAACC...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 90 bp GGTAGCAGAGGGCACAGGCACAGCCGTGGCAACAGCAGGTGTGGCTaGAGTGGGTGCAGGAGGCGCAGCCGTGGCAAGGGCTGCGGTGCT +
Preference number: 5 (lower is better)
Translates to: GSRGHRHSRGNSRCG*SGCRRRSRGKGCGA
Trigger: AGCACCGCAGCCCTTGCCACGGCTGCGCCTCCTGCACCCACTGCAGCCACACCTGCTGTTGCCACGGCTGTGCCTGTGCCCTCTGCTACC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 90 bp AGGCATCCCTGGCTGTGGCATTGTAGGCTGAGCCATCCCCGGCTGTaGCAATCCCGGCTGAGCCATCCCAGGCTGCGGCATCCCCGGCTG +
Preference number: 5 (lower is better)
Translates to: RHPWLWHCRLSHPRL*QSRLSHPRLRHPRL
Trigger: CAGCCGGGGATGCCGCAGCCTGGGATGGCTCAGCCGGGATTGGCACAGCCGGGGATGGCTCAGCCTACAATGCCACAGCCAGGGATGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS TCA 90 bp GTGAAAGCGGGCGGCTGGAGAGCACCGACAACAGGAGGGCCCGGCTaGTGGGGCGGGACCTGTGGAGGTGGCACTGTTATAGGCGCAGGA +
Preference number: 5 (lower is better)
Translates to: VKAGGWRAPTTGGPG*WGGTCGGGTVIGAG
Trigger: TCCTGCGCCTATAACAGTGCCACCTCCACAGGTCCCGCCCCATCAGCCGGGCCCTCCTGTTGTCGGTGCTCTCCAGCCGCCCGCTTTCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp GTGGAGCTGGAGAAACCCCAGGCTGAGCCATCCCCGGCTGAGGCATaGCAGGCTGAGGCATGGCAGGCTGAGGCATCCCAGGCTGAGCCA +
Preference number: 5 (lower is better)
Translates to: VELEKPQAEPSPAEA*QAEAWQAEASQAEP
Trigger: TGGCTCAGCCTGGGATGCCTCAGCCTGCCATGCCTCAGCCTGCCATGCCTCAGCCGGGGATGGCTCAGCCTGGGGTTTCTCCAGCTCCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp ACCGACAACAGGAGGGCCCGGCTGATGGGGCGGGACCTGTGGAGGTaGCACTGTTATAGGCGCAGGAACAGGGATGGGAGGGACCGGCAC +
Preference number: 5 (lower is better)
Translates to: TDNRRARLMGRDLWR*HCYRRRNRDGRDRH
Trigger: GTGCCGGTCCCTCCCATCCCTGTTCCTGCGCCTATAACAGTGCCACCTCCACAGGTCCCGCCCCATCAGCCGGGCCCTCCTGTTGTCGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp AGCCATCCCAGGCTGAGGCATCCCTGGCTGAGGCATCCCTGGCTGTaGCATTGTAGGCTGAGCCATCCCCGGCTGTGCCAATCCCGGCTG +
Preference number: 5 (lower is better)
Translates to: SHPRLRHPWLRHPWL*HCRLSHPRLCQSRL
Trigger: CAGCCGGGATTGGCACAGCCGGGGATGGCTCAGCCTACAATGCCACAGCCAGGGATGCCTCAGCCAGGGATGCCTCAGCCTGGGATGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp CGGCTGAGCCATCCCAGGCTGAGGCATCCCTGGCTGAGGCATCCCTaGCTGTGGCATTGTAGGCTGAGCCATCCCCGGCTGTGCCAATCC +
Preference number: 5 (lower is better)
Translates to: RLSHPRLRHPWLRHP*LWHCRLSHPRLCQS
Trigger: GGATTGGCACAGCCGGGGATGGCTCAGCCTACAATGCCACAGCCAGGGATGCCTCAGCCAGGGATGCCTCAGCCTGGGATGGCTCAGCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 90 bp TGCTGCTGCTGCTGCTGTGGCGGTGGCTGCTGCTGTGGTTGTTGCTaGCTTCCATCTCTGTCTTCTGATGCTCCCGGGCCTGGCCCTGGG +
Preference number: 5 (lower is better)
Translates to: CCCCCCGGGCCCGCC*LPSLSSDAPGPGPG
Trigger: CCCAGGGCCAGGCCCGGGAGCATCAGAAGACAGAGATGGAAGGCAGCAACAACCACAGCAGCAGCCACCGCCACAGCAGCAGCAGCAGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS TCA 90 bp CTGCAGTGGGTGCAGGAGGCGCAGCCGTGGCAAGGGCTGCGGTGCTaGTGGCTGCAGCATCCTCTTTCTTTGAGTCTTCCACAGCTTCTG +
Preference number: 5 (lower is better)
Translates to: LQWVQEAQPWQGLRC*WLQHPLSLSLPQLL
Trigger: CAGAAGCTGTGGAAGACTCAAAGAAAGAGGATGCTGCAGCCATCAGCACCGCAGCCCTTGCCACGGCTGCGCCTCCTGCACCCACTGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS TCA 90 bp ATGGCAAAGCCCCCTGGTCCTGGTGGTGGCCCCCTGTGCATCATGTaGGGTGGCATGGGCCGAGGTGGCATCATAGGGAACCGTTGCAAA +
Preference number: 5 (lower is better)
Translates to: MAKPPGPGGGPLCIM*GGMGRGGIIGNRCK
Trigger: TTTGCAACGGTTCCCTATGATGCCACCTCGGCCCATGCCACCTCACATGATGCACAGGGGGCCACCACCAGGACCAGGGGGCTTTGCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 90 bp GAGTGGGATCAGGCCAGGTCTGGCACCAAGAAGACCGGTAGAGGGTaGCTGGAGCCCAATTACAGGACCCGGTGCAACTCCTTGAGTGCC +
Preference number: 5 (lower is better)
Translates to: EWDQARSGTKKTGRG*LEPNYRTRCNSLSA
Trigger: GGCACTCAAGGAGTTGCACCGGGTCCTGTAATTGGGCTCCAGGCACCCTCTACCGGTCTTCTTGGTGCCAGACCTGGCCTGATCCCACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 90 bp TGCTGCTGCGGCTGCTGCTGCTGCTGCTGCTGCTGTGGCGGTGGCTaGTGCTGTGGTTGTTGCTGCCTTCCATCTCTGTCTTCTGATGCT +
Preference number: 5 (lower is better)
Translates to: CCCGCCCCCCCCGGG*CCGCCCLPSLSSDA
Trigger: AGCATCAGAAGACAGAGATGGAAGGCAGCAACAACCACAGCAGCAGCCACCGCCACAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCAGCA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp CTCCTTGAGTGCCAAGCAGTGACACAGGCTGGGTTACAGGAGGGGTaGGCAGACTCGTGGGTGCAGCAGGTGGCCCAGCAGAACCATACA +
Preference number: 5 (lower is better)
Translates to: LLECQAVTQAGLQEG*ADSWVQQVAQQNHT
Trigger: TGTATGGTTCTGCTGGGCCACCTGCTGCACCCACGAGTCTGCCCACCCCTCCTGTAACCCAGCCTGTGTCACTGCTTGGCACTCAAGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp TGGTGGTGGCCCCCTGTGCATCATGTGAGGTGGCATGGGCCGAGGTaGCATCATAGGGAACCGTTGCAAATGTGGTGGAGGCATCCCTGG +
Preference number: 5 (lower is better)
Translates to: WWWPPVHHVRWHGPR*HHREPLQMWWRHPW
Trigger: CCAGGGATGCCTCCACCACATTTGCAACGGTTCCCTATGATGCCACCTCGGCCCATGCCACCTCACATGATGCACAGGGGGCCACCACCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp AAAGCCCCCTGGTCCTGGTGGTGGCCCCCTGTGCATCATGTGAGGTaGCATGGGCCGAGGTGGCATCATAGGGAACCGTTGCAAATGTGG +
Preference number: 5 (lower is better)
Translates to: KAPWSWWWPPVHHVR*HGPRWHHREPLQMW
Trigger: CCACATTTGCAACGGTTCCCTATGATGCCACCTCGGCCCATGCCACCTCACATGATGCACAGGGGGCCACCACCAGGACCAGGGGGCTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp CCCAGGCTGCGGCATCCCCGGCTGAGGCATGGGAGGAAATGGAGGTaGTGCAGAAAGAAGCCCAAATCCTGGCATCTGTCCATTAGGAGG +
Preference number: 5 (lower is better)
Translates to: PRLRHPRLRHGRKWR*CRKKPKSWHLSIRR
Trigger: CCTCCTAATGGACAGATGCCAGGATTTGGGCTTCTTTCTGCACCACCTCCATTTCCTCCCATGCCTCAGCCGGGGATGCCGCAGCCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS TCA 90 bp CCTTTCTGCCGCCGTTCCCTCTCTTTTTCTCGATCCCGTCTTTCTTaGGATCGAGAGCGAGGTGAGTGTCGGCGCCTGTCCCTGGACCGA +
Preference number: 5 (lower is better)
Translates to: PFCRRSLSFSRSRLS*DRERGECRRLSLDR
Trigger: TCGGTCCAGGGACAGGCGCCGACACTCACCTCGCTCTCGATCTCAAGAAAGACGGGATCGAGAAAAAGAGAGGGAACGGCGGCAGAAAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp AGCCATCCCAGGCTGCGGCATCCCCGGCTGAGGCATGGGAGGAAATaGAGGTGGTGCAGAAAGAAGCCCAAATCCTGGCATCTGTCCATT +
Preference number: 5 (lower is better)
Translates to: SHPRLRHPRLRHGRK*RWCRKKPKSWHLSI
Trigger: AATGGACAGATGCCAGGATTTGGGCTTCTTTCTGCACCACCTCCATTTCCTCCCATGCCTCAGCCGGGGATGCCGCAGCCTGGGATGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp GATGGGAGGGACCGGCACAGGCACAGGCTTAGGTATGGGGGAAACTaGCTCTGTGTGGGAGGTTTCTGCACCTCCATTCTGGGCAACTTC +
Preference number: 5 (lower is better)
Translates to: DGRDRHRHRLRYGGN*LCVGGFCTSILGNF
Trigger: GAAGTTGCCCAGAATGGAGGTGCAGAAACCTCCCACACAGAGCCAGTTTCCCCCATACCTAAGCCTGTGCCTGTGCCGGTCCCTCCCATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 90 bp TCCCGATGCCCACTAGAGCGTCTACTTCTCTCTTCCAAGTCTCTGTaGCTGTCCCGGTCAGGGCTCCTTCTTCCCCACTCTCTCCTTTCA +
Preference number: 5 (lower is better)
Translates to: SRCPLERLLLSSKSL*LSRSGLLLPHSLLS
Trigger: TGAAAGGAGAGAGTGGGGAAGAAGGAGCCCTGACCGGGACAGGCACAGAGACTTGGAAGAGAGAAGTAGACGCTCTAGTGGGCATCGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp ACCGGCACAGGCACAGGCTTAGGTATGGGGGAAACTGGCTCTGTGTaGGAGGTTTCTGCACCTCCATTCTGGGCAACTTCATTGTCAGGC +
Preference number: 5 (lower is better)
Translates to: TGTGTGLGMGETGSV*EVSAPPFWATSLSG
Trigger: GCCTGACAATGAAGTTGCCCAGAATGGAGGTGCAGAAACCTCCCACACAGAGCCAGTTTCCCCCATACCTAAGCCTGTGCCTGTGCCGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp CATTCGAGGCTGAAACTGGTCCATACTTTGATGCTGTGTGTATGCTaGCTGCTGCACGCCATCTCCAGGGTACCCAAATGGGGTCTGTGG +
Preference number: 5 (lower is better)
Translates to: HSRLKLVHTLMLCVC*LLHAISRVPKWGLW
Trigger: CCACAGACCCCATTTGGGTACCCTGGAGATGGCGTGCAGCAGCCAGCATACACACAGCATCAAAGTATGGACCAGTTTCAGCCTCGAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS TCA 90 bp CGTGGCAAGGGCTGCGGTGCTGATGGCTGCAGCATCCTCTTTCTTTaGGTCTTCCACAGCTTCTGGCTCGTCATCGTAATCGAATCTATC +
Preference number: 5 (lower is better)
Translates to: RGKGCGADGCSILFL*VFHSFWLVIVIESI
Trigger: GATAGATTCGATTACGATGACGAGCCAGAAGCTGTGGAAGACTCAAAGAAAGAGGATGCTGCAGCCATCAGCACCGCAGCCCTTGCCACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 90 bp CATCATTCGAGGCTGAAACTGGTCCATACTTTGATGCTGTGTGTATaGTGGCTGCTGCACGCCATCTCCAGGGTACCCAAATGGGGTCTG +
Preference number: 5 (lower is better)
Translates to: HHSRLKLVHTLMLCV*WLLHAISRVPKWGL
Trigger: CAGACCCCATTTGGGTACCCTGGAGATGGCGTGCAGCAGCCAGCATACACACAGCATCAAAGTATGGACCAGTTTCAGCCTCGAATGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 90 bp GTTCACCTTGTAGTTTCCTCGGCTCAGTTTCTGCAGGGCACGGTATaGATCTTGTCTATGAACCATGACGATGTAGGCACAGCCCCTGGG +
Preference number: 5 (lower is better)
Translates to: VHLVVSSAQFLQGTV*ILSMNHDDVGTAPG
Trigger: CCCAGGGGCTGTGCCTACATCGTCATGGTTCATAGACAAGATGCATACCGTGCCCTGCAGAAACTGAGCCGAGGAAACTACAAGGTGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 90 bp CACAGGCTTAGGTATGGGGGAAACTGGCTCTGTGTGGGAGGTTTCTaGACCTCCATTCTGGGCAACTTCATTGTCAGGCTTCTTGGGGAT +
Preference number: 5 (lower is better)
Translates to: HRLRYGGNWLCVGGF*TSILGNFIVRLLGD
Trigger: ATCCCCAAGAAGCCTGACAATGAAGTTGCCCAGAATGGAGGTGCAGAAACCTCCCACACAGAGCCAGTTTCCCCCATACCTAAGCCTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 90 bp GGTTCCCACTTGGCTAAGGGGAGGTTCCACAGCTTTGTTACCACCTaGCCTGTCTGCCACCTCGTGCTTCTCCTTTCGATTTTCTTCCTT +
Preference number: 5 (lower is better)
Translates to: GSHLAKGRFHSFVTT*PVCHLVLLLSIFFL
Trigger: AAGGAAGAAAATCGAAAGGAGAAGCACGAGGTGGCAGACAGGGCAGGTGGTAACAAAGCTGTGGAACCTCCCCTTAGCCAAGTGGGAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS TCA 90 bp GTCCCACCCACAGTGTGGTACTACAAACACTTGCAGTTTCTGACTTaGTCTGAGGGAGGCCTTTCTGCCGCCGTTCCCTCTCTTTTTCTC +
Preference number: 5 (lower is better)
Translates to: VPPTVWYYKHLQFLT*SEGGLSAAVPSLFL
Trigger: GAGAAAAAGAGAGGGAACGGCGGCAGAAAGGCCTCCCTCAGATCAAGTCAGAAACTGCAAGTGTTTGTAGTACCACACTGTGGGTGGGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS TCA 90 bp CAGTTGTCCCACCCACAGTGTGGTACTACAAACACTTGCAGTTTCTaGCTTGATCTGAGGGAGGCCTTTCTGCCGCCGTTCCCTCTCTTT +
Preference number: 5 (lower is better)
Translates to: QLSHPQCGTTNTCSF*LDLREAFLPPFPLF
Trigger: AAAGAGAGGGAACGGCGGCAGAAAGGCCTCCCTCAGATCAAGTCAGAAACTGCAAGTGTTTGTAGTACCACACTGTGGGTGGGACAACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 90 bp TCTCTACGGGACTCTCTATCTCTAGAATCCCTGTCTCTGTCCCGATaGCCACTAGAGCGTCTACTTCTCTCTTCCAAGTCTCTGTGCCTG +
Preference number: 5 (lower is better)
Translates to: SLRDSLSLESLSLSR*PLERLLLSSKSLCL
Trigger: CAGGCACAGAGACTTGGAAGAGAGAAGTAGACGCTCTAGTGGGCATCGGGACAGAGACAGGGATTCTAGAGATAGAGAGTCCCGTAGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp AGGCATGGGAGGAAATGGAGGTGGTGCAGAAAGAAGCCCAAATCCTaGCATCTGTCCATTAGGAGGAAGTGGAACCTGATGGTGCATCGT +
Preference number: 5 (lower is better)
Translates to: RHGRKWRWCRKKPKS*HLSIRRKWNLMVHR
Trigger: ACGATGCACCATCAGGTTCCACTTCCTCCTAATGGACAGATGCCAGGATTTGGGCTTCTTTCTGCACCACCTCCATTTCCTCCCATGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp ATGGGGGAAACTGGCTCTGTGTGGGAGGTTTCTGCACCTCCATTCTaGGCAACTTCATTGTCAGGCTTCTTGGGGATGCCTTTCCAATCT +
Preference number: 5 (lower is better)
Translates to: MGETGSVWEVSAPPF*ATSLSGFLGMPFQS
Trigger: AGATTGGAAAGGCATCCCCAAGAAGCCTGACAATGAAGTTGCCCAGAATGGAGGTGCAGAAACCTCCCACACAGAGCCAGTTTCCCCCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACGAGAAGAGCTCCTGGTaGAAGGCGTTGACGGCGTCC +
Preference number: 5 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYEKSSW*KALTAS
Trigger: GGACGCCGTCAACGCCTTCAACCAGGAGCTCTTCTC...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS TCA 90 bp ACCCACAGTGTGGTACTACAAACACTTGCAGTTTCTGACTTGATCTaGGGGAGGCCTTTCTGCCGCCGTTCCCTCTCTTTTTCTCGATCC +
Preference number: 5 (lower is better)
Translates to: THSVVLQTLAVSDLI*GRPFCRRSLSFSRS
Trigger: GGATCGAGAAAAAGAGAGGGAACGGCGGCAGAAAGGCCTCCCTCAGATCAAGTCAGAAACTGCAAGTGTTTGTAGTACCACACTGTGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCGCTGCTGGCCTTGAGTaGTCTGGAACAGCTGAGCCA +
Preference number: 5 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPAAGLE*SGTAEP
Trigger: TGGCTCAGCTGTTCCAGACAACTCAAGGCCAGCAGC...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCAGAGAAGAGCTCCTGGTaGAAGGCGTTGACGGCGTCC +
Preference number: 5 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSEKSSW*KALTAS
Trigger: GGACGCCGTCAACGCCTTCAACCAGGAGCTCTTCTC...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGGCTGCTGGCCTTGAGTaGTCTGGAACAGCTGAGCCA +
Preference number: 5 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILAAGLE*SGTAEP
Trigger: TGGCTCAGCTGTTCCAGACAACTCAAGGCCAGCAGC...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCCTGAAGCTGCTGGCCTaGAGTTGTCTGGAACAGCTG +
Preference number: 5 (lower is better)
Translates to: QERILYSICTPHVLHPSVLKLLA*SCLEQL
Trigger: CAGCTGTTCCAGACAACTCAAGGCCAGCAGCTTCAG...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACAGGCGGGAGACTGTGGTaGTGGAGGCTGTTGAAAAGT +
Preference number: 5 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTGGRLW*WRLLKS
Trigger: ACTTTTCAACAGCCTCCACAACCACAGTCTCCCGCC...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTGGCGGGAGACTGTGGTaGTGGAGGCTGTTGAAAAGT +
Preference number: 5 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCGGRLW*WRLLKS
Trigger: ACTTTTCAACAGCCTCCACAACCACAGTCTCCCGCC...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATGAGAAGAGCTCCTGGTaGAAGGCGTTGACGGCGTCC +
Preference number: 5 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHEKSSW*KALTAS
Trigger: GGACGCCGTCAACGCCTTCAACCAGGAGCTCTTCTC...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCCTGAAGCTGCTGGCCTaGAGTTGTCTGGAACAGCTG +
Preference number: 5 (lower is better)
Translates to: RILYSICTPHVLHPSVTVLKLLA*SCLEQL
Trigger: CAGCTGTTCCAGACAACTCAAGGCCAGCAGCTTCAG...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCAGTCCTTTTGTCCAGTaGTCCCACCCACAGTGTGGT +
Preference number: 5 (lower is better)
Translates to: QERILYSICTPHVLHPSVSPFVQ*SHPQCG
Trigger: ACCACACTGTGGGTGGGACAACTGGACAAAAGGACT...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCCAGCTCCTCAGCTTaGACTTTGTCCCACGGAATG +
Preference number: 5 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQSSSSA*TLSHGM
Trigger: CATTCCGTGGGACAAAGTCAAAGCTGAGGAGCTGGA...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACCCCCAGACACCAAGTTaGGGATGCTTATTGGTGGAG +
Preference number: 5 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYPQTPS*GCLLVE
Trigger: CTCCACCAATAAGCATCCCAAACTTGGTGTCTGGGG...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATGCTGCTGGCCTTGAGTaGTCTGGAACAGCTGAGCCA +
Preference number: 5 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHAAGLE*SGTAEP
Trigger: TGGCTCAGCTGTTCCAGACAACTCAAGGCCAGCAGC...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACTGAAGCTGCTGGCCTaGAGTTGTCTGGAACAGCTG +
Preference number: 5 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTLKLLA*SCLEQL
Trigger: CAGCTGTTCCAGACAACTCAAGGCCAGCAGCTTCAG...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCAGGCGGGAGACTGTGGTaGTGGAGGCTGTTGAAAAGT +
Preference number: 5 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSGGRLW*WRLLKS
Trigger: ACTTTTCAACAGCCTCCACAACCACAGTCTCCCGCC...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATAGTCCTTTTGTCCAGTaGTCCCACCCACAGTGTGGT +
Preference number: 5 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHSPFVQ*SHPQCG
Trigger: ACCACACTGTGGGTGGGACAACTGGACAAAAGGACT...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCCGCCTTTATTCCTTaGTTCAAGGCCCAGGCAATC +
Preference number: 5 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQSAFIP*FKAQAI
Trigger: GATTGCCTGGGCCTTGAACAAAGGAATAAAGGCGGA...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCCAGCTCCTCAGCTTaGACTTTGTCCCACGGAATG +
Preference number: 5 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILSSSSA*TLSHGM
Trigger: CATTCCGTGGGACAAAGTCAAAGCTGAGGAGCTGGA...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTTCTGGGCAACTTCATaGTCAGGCTTCTTGGGGATG +
Preference number: 5 (lower is better)
Translates to: LWDDVAGADIIQHLYTSCFWATS*SGFLGM
Trigger: CATCCCCAAGAAGCCTGACAATGAAGTTGCCCAGAA...ACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCTTCTGGGCAACTTCATaGTCAGGCTTCTTGGGGATG +
Preference number: 5 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPFWATS*SGFLGM
Trigger: CATCCCCAAGAAGCCTGACAATGAAGTTGCCCAGAA...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp AATCCCCACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATTTCTGGGCAACTTCATaGTCAGGCTTCTTGGGGATG +
Preference number: 5 (lower is better)
Translates to: NPHQLLWDDVAGADIIQHFWATS*SGFLGM
Trigger: CATCCCCAAGAAGCCTGACAATGAAGTTGCCCAGAA...ATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTGGGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCAGTTTGGGATGCTTATaGGTGGAGTGTGAGGTGGAG +
Preference number: 5 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVSLGCL*VECEVE
Trigger: CTCCACCTCACACTCCACCAATAAGCATCCCAAACT...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATGGTCTCTACCTGAGTaGAACTGCTGCCTGCTATCA +
Preference number: 5 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTWSLPE*NCCLLS
Trigger: TGATAGCAGGCAGCAGTTCAACTCAGGTAGAGACCA...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CACCAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACTGGTCTCTACCTGAGTaGAACTGCTGCCTGCTATCA +
Preference number: 5 (lower is better)
Translates to: HQLLWDDVAGADIIQHLYWSLPE*NCCLLS
Trigger: TGATAGCAGGCAGCAGTTCAACTCAGGTAGAGACCA...GTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 90 bp TTAGAGAATCTTGGCCCAAAAACATCTTTATCAGTTCCAAACTGGTaGCGAGACTGTCTCACGATGGAGTCGATGACATACAGGCCTGGA +
Preference number: 5 (lower is better)
Translates to: LENLGPKTSLSVPNW*RDCLTMESMTYRPG
Trigger: TCCAGGCCTGTATGTCATCGACTCCATCGTGAGACAGTCTCGGCACCAGTTTGGAACTGATAAAGATGTTTTTGGGCCAAGATTCTCTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp ATTAGGAGGAAGTGGAACCTGATGGTGCATCGTATCCTGCTGTATTaGCATCATTCGAGGCTGAAACTGGTCCATACTTTGATGCTGTGT +
Preference number: 5 (lower is better)
Translates to: IRRKWNLMVHRILLY*HHSRLKLVHTLMLC
Trigger: ACACAGCATCAAAGTATGGACCAGTTTCAGCCTCGAATGATGCCAATACAGCAGGATACGATGCACCATCAGGTTCCACTTCCTCCTAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCGTAATGAGAATCATCTaGGCTCTAGAGATGGGAGGC +
Preference number: 5 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTVMRII*ALEMGG
Trigger: GCCTCCCATCTCTAGAGCCAAGATGATTCTCATTAC...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCGGAGGTGAGCCTTCATaGTTGGTGACATTTTCTGCT +
Preference number: 5 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVGGEPS*LVTFSA
Trigger: AGCAGAAAATGTCACCAACAATGAAGGCTCACCTCC...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACAGGAGGTGAGCCTTCATaGTTGGTGACATTTTCTGCT +
Preference number: 5 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTGGEPS*LVTFSA
Trigger: AGCAGAAAATGTCACCAACAATGAAGGCTCACCTCC...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCCAGCATCCTCTTTCTTaGAGTCTTCCACAGCTTCTG +
Preference number: 5 (lower is better)
Translates to: QERILYSICTPHVLHPSVQHPLS*SLPQLL
Trigger: CAGAAGCTGTGGAAGACTCAAAGAAAGAGGATGCTG...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGTCAAGTTGATTGGAAAGTaGGCTGTACTGGTGGAGCTG +
Preference number: 5 (lower is better)
Translates to: YTSCSTPKCHCHILSHPVKLIGK*AVLVEL
Trigger: CAGCTCCACCAGTACAGCCAACTTTCCAATCAACTT...GACTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCAAGTTGATTGGAAAGTaGGCTGTACTGGTGGAGCTG +
Preference number: 5 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTKLIGK*AVLVEL
Trigger: CAGCTCCACCAGTACAGCCAACTTTCCAATCAACTT...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGGGCACGGTATGCATCTaGTCTATGAACCATGACGAT +
Preference number: 5 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQGTVCI*SMNHDD
Trigger: ATCGTCATGGTTCATAGACAAGATGCATACCGTGCC...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCGGCACGGTATGCATCTaGTCTATGAACCATGACGAT +
Preference number: 5 (lower is better)
Translates to: DVAGADIIQHLYTSCSTPGTVCI*SMNHDD
Trigger: ATCGTCATGGTTCATAGACAAGATGCATACCGTGCC...GGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTTCCGCCTTTATTCCTTaGTTCAAGGCCCAGGCAATC +
Preference number: 5 (lower is better)
Translates to: WDDVAGADIIQHLYTSCSSAFIP*FKAQAI
Trigger: GATTGCCTGGGCCTTGAACAAAGGAATAAAGGCGGA...AGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCCGCCTTTATTCCTTaGTTCAAGGCCCAGGCAATC +
Preference number: 5 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILSAFIP*FKAQAI
Trigger: GATTGCCTGGGCCTTGAACAAAGGAATAAAGGCGGA...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACATCCAGCTCCTCAGCTTaGACTTTGTCCCACGGAATG +
Preference number: 5 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTSSSSA*TLSHGM
Trigger: CATTCCGTGGGACAAAGTCAAAGCTGAGGAGCTGGA...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCTCATTGTCAGGCTTCTaGGGGATGCCTTTCCAATCT +
Preference number: 5 (lower is better)
Translates to: QERILYSICTPHVLHPSVSLSGF*GMPFQS
Trigger: AGATTGGAAAGGCATCCCCAAGAAGCCTGACAATGA...GACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCATTGTCAGGCTTCTaGGGGATGCCTTTCCAATCT +
Preference number: 5 (lower is better)
Translates to: ASVHLMFYTQVSLSHSVTSLSGF*GMPFQS
Trigger: AGATTGGAAAGGCATCCCCAAGAAGCCTGACAATGA...TGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATAGTTTGGGATGCTTATaGGTGGAGTGTGAGGTGGAG +
Preference number: 5 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHSLGCL*VECEVE
Trigger: CTCCACCTCACACTCCACCAATAAGCATCCCAAACT...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS TCA 90 bp CCTACTTCCAAAAGATCTTCTTCCAAACCTTTCTTGGTCTCTACCTaGGTTGAACTGCTGCCTGCTATCATTTCTAAACTGCGGTGGCTG +
Preference number: 5 (lower is better)
Translates to: PTSKRSSSKPFLVST*VELLPAIISKLRWL
Trigger: CAGCCACCGCAGTTTAGAAATGATAGCAGGCAGCAGTTCAACTCAGGTAGAGACCAAGAAAGGTTTGGAAGAAGATCTTTTGGAAGTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCTGGTTGTGGAGGCTGTaGAAAAGTCTGAAGGATCTG +
Preference number: 5 (lower is better)
Translates to: RILYSICTPHVLHPSVTVWLWRL*KSLKDL
Trigger: CAGATCCTTCAGACTTTTCAACAGCCTCCACAACCA...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp ATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTGGTTGTGGAGGCTGTaGAAAAGTCTGAAGGATCTG +
Preference number: 5 (lower is better)
Translates to: IQHLYTSCSTPKCHCHILWLWRL*KSLKDL
Trigger: CAGATCCTTCAGACTTTTCAACAGCCTCCACAACCA...CAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CGGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCCAGCATCCTCTTTCTTaGAGTCTTCCACAGCTTCTG +
Preference number: 5 (lower is better)
Translates to: RILYSICTPHVLHPSVTVQHPLS*SLPQLL
Trigger: CAGAAGCTGTGGAAGACTCAAAGAAAGAGGATGCTG...GACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATCCAGAAACTGGTCCATACTTaGATGCTGTGTGTATGCTGG +
Preference number: 5 (lower is better)
Translates to: CTPHVLHPSVTVTFCHIQKLVHT*MLCVCW
Trigger: CCAGCATACACACAGCATCAAAGTATGGACCAGTTT...CTGGATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATAGTCCTTTTGTCCAGTaGTCCCACCCACAGTGTGGT +
Preference number: 5 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHSPFVQ*SHPQCG
Trigger: ACCACACTGTGGGTGGGACAACTGGACAAAAGGACT...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATCCCCAGACACCAAGTTaGGGATGCTTATTGGTGGAG +
Preference number: 5 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHPQTPS*GCLLVE
Trigger: CTCCACCAATAAGCATCCCAAACTTGGTGTCTGGGG...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp TTTTTAGAGAATCTTGGCCCAAAAACATCTTTATCAGTTCCAAACTaGTGCCGAGACTGTCTCACGATGGAGTCGATGACATACAGGCCT +
Preference number: 5 (lower is better)
Translates to: FLENLGPKTSLSVPN*CRDCLTMESMTYRP
Trigger: AGGCCTGTATGTCATCGACTCCATCGTGAGACAGTCTCGGCACCAGTTTGGAACTGATAAAGATGTTTTTGGGCCAAGATTCTCTAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCAGTAATGAGAATCATCTaGGCTCTAGAGATGGGAGGC +
Preference number: 5 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSVMRII*ALEMGG
Trigger: GCCTCCCATCTCTAGAGCCAAGATGATTCTCATTAC...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACATGGTTGTGGAGGCTGTaGAAAAGTCTGAAGGATCTG +
Preference number: 5 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTWLWRL*KSLKDL
Trigger: CAGATCCTTCAGACTTTTCAACAGCCTCCACAACCA...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTCAGCATCCTCTTTCTTaGAGTCTTCCACAGCTTCTG +
Preference number: 5 (lower is better)
Translates to: YTASVHLMFYTQVSLSHSQHPLS*SLPQLL
Trigger: CAGAAGCTGTGGAAGACTCAAAGAAAGAGGATGCTG...AGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACAAAGTTGATTGGAAAGTaGGCTGTACTGGTGGAGCTG +
Preference number: 5 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTKLIGK*AVLVEL
Trigger: CAGCTCCACCAGTACAGCCAACTTTCCAATCAACTT...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCAGGCACGGTATGCATCTaGTCTATGAACCATGACGAT +
Preference number: 5 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSGTVCI*SMNHDD
Trigger: ATCGTCATGGTTCATAGACAAGATGCATACCGTGCC...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTACATCATTGTCAGGCTTCTaGGGGATGCCTTTCCAATCT +
Preference number: 5 (lower is better)
Translates to: DDVAGADIIQHLYTSCSTSLSGF*GMPFQS
Trigger: AGATTGGAAAGGCATCCCCAAGAAGCCTGACAATGA...TGTAGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATGGTAAATGCATTGGGTaGAATCCTGGGCGCAAAAAT +
Preference number: 5 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHGKCIG*NPGRKN
Trigger: ATTTTTGCGCCCAGGATTCAACCCAATGCATTTACC...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATAGTTTGGGATGCTTATaGGTGGAGTGTGAGGTGGAG +
Preference number: 5 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHSLGCL*VECEVE
Trigger: CTCCACCTCACACTCCACCAATAAGCATCCCAAACT...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATGGAGGTGAGCCTTCATaGTTGGTGACATTTTCTGCT +
Preference number: 5 (lower is better)
Translates to: YYTASVHLMFYTQVSLSHGGEPS*LVTFSA
Trigger: AGCAGAAAATGTCACCAACAATGAAGGCTCACCTCC...ATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp GGATATTATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCAAAACTGGTCCATACTTaGATGCTGTGTGTATGCTGG +
Preference number: 5 (lower is better)
Translates to: GYYTASVHLMFYTQVSLSKLVHT*MLCVCW
Trigger: CCAGCATACACACAGCATCAAAGTATGGACCAGTTT...TGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATAATATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CAACTACTGTGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTTTGTGGCTGAAAAGTaGATTGGAAAGTTGGCTGTA +
Preference number: 5 (lower is better)
Translates to: QLLWDDVAGADIIQHLYTFVAEK*IGKLAV
Trigger: TACAGCCAACTTTCCAATCAACTTTTCAGCCACAAA...GGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCACAGTAGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TATACAGCATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGGTAAATGCATTGGGTaGAATCCTGGGCGCAAAAAT +
Preference number: 5 (lower is better)
Translates to: YTASVHLMFYTQVSLSHSGKCIG*NPGRKN
Trigger: ATTTTTGCGCCCAGGATTCAACCCAATGCATTTACC...AGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATGCTGTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp TGGGATGATGTAGCAGGAGCGGATATTATACAGCATCTGTACACCTCATGTTCTTTTGTGGCTGAAAAGTaGATTGGAAAGTTGGCTGTA +
Preference number: 5 (lower is better)
Translates to: WDDVAGADIIQHLYTSCSFVAEK*IGKLAV
Trigger: TACAGCCAACTTTCCAATCAACTTTTCAGCCACAAA...AGAACATGAGGTGTACAGATGCTGTATAATATCCGCTCCTGCTACATCATCCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS-3UTR CAA 90 bp CATCTGTACACCTCATGTTCTACACCCAAGTGTCACTGTCACATTCTGTCACATTTTGTGGCTGAAAAGTaGATTGGAAAGTTGGCTGTA +
Preference number: 5 (lower is better)
Translates to: HLYTSCSTPKCHCHILSHFVAEK*IGKLAV
Trigger: TACAGCCAACTTTCCAATCAACTTTTCAGCCACAAA...ATGTGACAGAATGTGACAGTGACACTTGGGTGTAGAACATGAGGTGTACAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 90 bp TCATTTTCCACCCTACTTCCAAAAGATCTTCTTCCAAACCTTTCTTaGTCTCTACCTGAGTTGAACTGCTGCCTGCTATCATTTCTAAAC +
Preference number: 5 (lower is better)
Translates to: SFSTLLPKDLLPNLS*SLPELNCCLLSFLN
Trigger: GTTTAGAAATGATAGCAGGCAGCAGTTCAACTCAGGTAGAGACCAAGAAAGGTTTGGAAGAAGATCTTTTGGAAGTAGGGTGGAAAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp CAGGCACAGCCGTGGCAACAGCAGGTGTGGCTGCAGTaGGTGCAGGAGGCGCAGCCGTGGCAAGGGCTGCGG +
Preference number: 6 (lower is better)
Translates to: QAQPWQQQVWLQ*VQEAQPWQGLR
Trigger: CCGCAGCCCTTGCCACGGCTGCGCCTCCTGCACCCACTGCAGCCACACCTGCTGTTGCCACGGCTGTGCCTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp GAGCCATCCCCGGCTGAGGCATGGCAGGCTGAGGCATaGCAGGCTGAGGCATCCCAGGCTGAGCCATCCCCG +
Preference number: 6 (lower is better)
Translates to: EPSPAEAWQAEA*QAEASQAEPSP
Trigger: CGGGGATGGCTCAGCCTGGGATGCCTCAGCCTGCCATGCCTCAGCCTGCCATGCCTCAGCCGGGGATGGCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp CAGAGGGCACAGGCACAGCCGTGGCAACAGCAGGTGTaGCTGCAGTGGGTGCAGGAGGCGCAGCCGTGGCAA +
Preference number: 6 (lower is better)
Translates to: QRAQAQPWQQQV*LQWVQEAQPWQ
Trigger: TTGCCACGGCTGCGCCTCCTGCACCCACTGCAGCCACACCTGCTGTTGCCACGGCTGTGCCTGTGCCCTCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 72 bp AGGCTGAGGCATCCCAGGCTGAGCCATCCCCGGCTGTaGCAATCCCGGCTGAGCCATCCCAGGCTGAGGCAT +
Preference number: 6 (lower is better)
Translates to: RLRHPRLSHPRL*QSRLSHPRLRH
Trigger: ATGCCTCAGCCTGGGATGGCTCAGCCGGGATTGGCACAGCCGGGGATGGCTCAGCCTGGGATGCCTCAGCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp CGGCGCCTGTCCCTGGACCGAGACCGAGAGCGACGGTaGCGGGATCTCCGAGACCTAGAGCCAGACCTAGAT +
Preference number: 6 (lower is better)
Translates to: RRLSLDRDRERR*RDLRDLEPDLD
Trigger: ATCTAGGTCTGGCTCTAGGTCTCGGAGATCCCGCCACCGTCGCTCTCGGTCTCGGTCCAGGGACAGGCGCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp AGGAGGGCCCGGCTGATGGGGCGGGACCTGTGGAGGTaGCACTGTTATAGGCGCAGGAACAGGGATGGGAGG +
Preference number: 6 (lower is better)
Translates to: RRARLMGRDLWR*HCYRRRNRDGR
Trigger: CCTCCCATCCCTGTTCCTGCGCCTATAACAGTGCCACCTCCACAGGTCCCGCCCCATCAGCCGGGCCCTCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 72 bp TGGCTGTGGCATTGTAGGCTGAGCCATCCCCGGCTGTaGCAATCCCGGCTGAGCCATCCCAGGCTGCGGCAT +
Preference number: 6 (lower is better)
Translates to: WLWHCRLSHPRL*QSRLSHPRLRH
Trigger: ATGCCGCAGCCTGGGATGGCTCAGCCGGGATTGGCACAGCCGGGGATGGCTCAGCCTACAATGCCACAGCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp TGCCAAGCAGTGACACAGGCTGGGTTACAGGAGGGGTaGGCAGACTCGTGGGTGCAGCAGGTGGCCCAGCAG +
Preference number: 6 (lower is better)
Translates to: CQAVTQAGLQEG*ADSWVQQVAQQ
Trigger: CTGCTGGGCCACCTGCTGCACCCACGAGTCTGCCCACCCCTCCTGTAACCCAGCCTGTGTCACTGCTTGGCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp AGGCTGAGGCATCCCTGGCTGAGGCATCCCTGGCTGTaGCATTGTAGGCTGAGCCATCCCCGGCTGTGCCAA +
Preference number: 6 (lower is better)
Translates to: RLRHPWLRHPWL*HCRLSHPRLCQ
Trigger: TTGGCACAGCCGGGGATGGCTCAGCCTACAATGCCACAGCCAGGGATGCCTCAGCCAGGGATGCCTCAGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp CAATCCCGGCTGAGCCATCCCAGGCTGAGGCATCCCTaGCTGAGGCATCCCTGGCTGTGGCATTGTAGGCTG +
Preference number: 6 (lower is better)
Translates to: QSRLSHPRLRHP*LRHPWLWHCRL
Trigger: CAGCCTACAATGCCACAGCCAGGGATGCCTCAGCCAGGGATGCCTCAGCCTGGGATGGCTCAGCCGGGATTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 72 bp CAGGCCAGGTCTGGCACCAAGAAGACCGGTAGAGGGTaGCTGGAGCCCAATTACAGGACCCGGTGCAACTCC +
Preference number: 6 (lower is better)
Translates to: QARSGTKKTGRG*LEPNYRTRCNS
Trigger: GGAGTTGCACCGGGTCCTGTAATTGGGCTCCAGGCACCCTCTACCGGTCTTCTTGGTGCCAGACCTGGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp TGGTCCTGGTGGTGGCCCCCTGTGCATCATGTGAGGTaGCATGGGCCGAGGTGGCATCATAGGGAACCGTTG +
Preference number: 6 (lower is better)
Translates to: WSWWWPPVHHVR*HGPRWHHREPL
Trigger: CAACGGTTCCCTATGATGCCACCTCGGCCCATGCCACCTCACATGATGCACAGGGGGCCACCACCAGGACCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS TCA 72 bp GTGCAGGAGGCGCAGCCGTGGCAAGGGCTGCGGTGCTaGTGGCTGCAGCATCCTCTTTCTTTGAGTCTTCCA +
Preference number: 6 (lower is better)
Translates to: VQEAQPWQGLRC*WLQHPLSLSLP
Trigger: TGGAAGACTCAAAGAAAGAGGATGCTGCAGCCATCAGCACCGCAGCCCTTGCCACGGCTGCGCCTCCTGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp AGGCTGCGGCATCCCCGGCTGAGGCATGGGAGGAAATaGAGGTGGTGCAGAAAGAAGCCCAAATCCTGGCAT +
Preference number: 6 (lower is better)
Translates to: RLRHPRLRHGRK*RWCRKKPKSWH
Trigger: ATGCCAGGATTTGGGCTTCTTTCTGCACCACCTCCATTTCCTCCCATGCCTCAGCCGGGGATGCCGCAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp CCCCCTGTGCATCATGTGAGGTGGCATGGGCCGAGGTaGCATCATAGGGAACCGTTGCAAATGTGGTGGAGG +
Preference number: 6 (lower is better)
Translates to: PPVHHVRWHGPR*HHREPLQMWWR
Trigger: CCTCCACCACATTTGCAACGGTTCCCTATGATGCCACCTCGGCCCATGCCACCTCACATGATGCACAGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS TCA 72 bp CGCCGTTCCCTCTCTTTTTCTCGATCCCGTCTTTCTTaGGATCGAGAGCGAGGTGAGTGTCGGCGCCTGTCC +
Preference number: 6 (lower is better)
Translates to: RRSLSFSRSRLS*DRERGECRRLS
Trigger: GGACAGGCGCCGACACTCACCTCGCTCTCGATCTCAAGAAAGACGGGATCGAGAAAAAGAGAGGGAACGGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp GACCGGCACAGGCACAGGCTTAGGTATGGGGGAAACTaGCTCTGTGTGGGAGGTTTCTGCACCTCCATTCTG +
Preference number: 6 (lower is better)
Translates to: DRHRHRLRYGGN*LCVGGFCTSIL
Trigger: CAGAATGGAGGTGCAGAAACCTCCCACACAGAGCCAGTTTCCCCCATACCTAAGCCTGTGCCTGTGCCGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CAA 72 bp ATGGTTCCCACTTGGCTAAGGGGAGGTTCCACAGCTTaGTTACCACCTGCCCTGTCTGCCACCTCGTGCTTC +
Preference number: 6 (lower is better)
Translates to: MVPTWLRGGSTA*LPPALSATSCF
Trigger: GAAGCACGAGGTGGCAGACAGGGCAGGTGGTAACAAAGCTGTGGAACCTCCCCTTAGCCAAGTGGGAACCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 72 bp TTGGCTAAGGGGAGGTTCCACAGCTTTGTTACCACCTaGCCTGTCTGCCACCTCGTGCTTCTCCTTTCGATT +
Preference number: 6 (lower is better)
Translates to: LAKGRFHSFVTT*PVCHLVLLLSI
Trigger: AATCGAAAGGAGAAGCACGAGGTGGCAGACAGGGCAGGTGGTAACAAAGCTGTGGAACCTCCCCTTAGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CAA 72 bp TCCTCGGCTCAGTTTCTGCAGGGCACGGTATGCATCTaGTCTATGAACCATGACGATGTAGGCACAGCCCCT +
Preference number: 6 (lower is better)
Translates to: SSAQFLQGTVCI*SMNHDDVGTAP
Trigger: AGGGGCTGTGCCTACATCGTCATGGTTCATAGACAAGATGCATACCGTGCCCTGCAGAAACTGAGCCGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CAA 72 bp CCAGGAGGAAGGAAACCTGGTGGTAAATGCATTGGGTaGAATCCTGGGCGCAAAAATGGTGGAGGAGGAGGG +
Preference number: 6 (lower is better)
Translates to: PGGRKPGGKCIG*NPGRKNGGGGG
Trigger: CCCTCCTCCTCCACCATTTTTGCGCCCAGGATTCAACCCAATGCATTTACCACCAGGTTTCCTTCCTCCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS TCA 72 bp CACCCACAGTGTGGTACTACAAACACTTGCAGTTTCTaGCTTGATCTGAGGGAGGCCTTTCTGCCGCCGTTC +
Preference number: 6 (lower is better)
Translates to: HPQCGTTNTCSF*LDLREAFLPPF
Trigger: GAACGGCGGCAGAAAGGCCTCCCTCAGATCAAGTCAGAAACTGCAAGTGTTTGTAGTACCACACTGTGGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 72 bp AGGCTGAAACTGGTCCATACTTTGATGCTGTGTGTATaGTGGCTGCTGCACGCCATCTCCAGGGTACCCAAA +
Preference number: 6 (lower is better)
Translates to: RLKLVHTLMLCV*WLLHAISRVPK
Trigger: TTTGGGTACCCTGGAGATGGCGTGCAGCAGCCAGCATACACACAGCATCAAAGTATGGACCAGTTTCAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 72 bp AGGTATGGGGGAAACTGGCTCTGTGTGGGAGGTTTCTaGACCTCCATTCTGGGCAACTTCATTGTCAGGCTT +
Preference number: 6 (lower is better)
Translates to: RYGGNWLCVGGF*TSILGNFIVRL
Trigger: AAGCCTGACAATGAAGTTGCCCAGAATGGAGGTGCAGAAACCTCCCACACAGAGCCAGTTTCCCCCATACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp CTGAAACTGGTCCATACTTTGATGCTGTGTGTATGCTaGCTGCTGCACGCCATCTCCAGGGTACCCAAATGG +
Preference number: 6 (lower is better)
Translates to: LKLVHTLMLCVC*LLHAISRVPKW
Trigger: CCATTTGGGTACCCTGGAGATGGCGTGCAGCAGCCAGCATACACACAGCATCAAAGTATGGACCAGTTTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CAA 90 bp CTTGTAGTTTCCTCGGCTCAGTTTCTGCAGGGCACGGTATGCATCTaGTCTATGAACCATGACGATGTAGGCACAGCCCCTGGGAGGAAT +
Preference number: 6 (lower is better)
Translates to: LVVSSAQFLQGTVCI*SMNHDDVGTAPGRN
Trigger: ATTCCTCCCAGGGGCTGTGCCTACATCGTCATGGTTCATAGACAAGATGCATACCGTGCCCTGCAGAAACTGAGCCGAGGAAACTACAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CAA 90 bp ATCCTGCTGTATTGGCATCATTCGAGGCTGAAACTGGTCCATACTTaGATGCTGTGTGTATGCTGGCTGCTGCACGCCATCTCCAGGGTA +
Preference number: 6 (lower is better)
Translates to: ILLYWHHSRLKLVHT*MLCVCWLLHAISRV
Trigger: TACCCTGGAGATGGCGTGCAGCAGCCAGCATACACACAGCATCAAAGTATGGACCAGTTTCAGCCTCGAATGATGCCAATACAGCAGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CAA 90 bp GAGGTTTCTGCACCTCCATTCTGGGCAACTTCATTGTCAGGCTTCTaGGGGATGCCTTTCCAATCTGGGTTAAGTGTGTCACTGTCCAGC +
Preference number: 6 (lower is better)
Translates to: EVSAPPFWATSLSGF*GMPFQSGLSVSLSS
Trigger: GCTGGACAGTGACACACTTAACCCAGATTGGAAAGGCATCCCCAAGAAGCCTGACAATGAAGTTGCCCAGAATGGAGGTGCAGAAACCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 72 bp GTAGTTTCCTCGGCTCAGTTTCTGCAGGGCACGGTATaGATCTTGTCTATGAACCATGACGATGTAGGCACA +
Preference number: 6 (lower is better)
Translates to: VVSSAQFLQGTV*ILSMNHDDVGT
Trigger: TGTGCCTACATCGTCATGGTTCATAGACAAGATGCATACCGTGCCCTGCAGAAACTGAGCCGAGGAAACTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 72 bp CCAAACCTTTCTTGGTCTCTACCTGAGTTGAACTGCTaGCTGCTATCATTTCTAAACTGCGGTGGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: PNLSWSLPELNC*LLSFLNCGGCC
Trigger: GCAGCAGCCACCGCAGTTTAGAAATGATAGCAGGCAGCAGTTCAACTCAGGTAGAGACCAAGAAAGGTTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp AGGAAATGGAGGTGGTGCAGAAAGAAGCCCAAATCCTaGCATCTGTCCATTAGGAGGAAGTGGAACCTGATG +
Preference number: 6 (lower is better)
Translates to: RKWRWCRKKPKS*HLSIRRKWNLM
Trigger: CATCAGGTTCCACTTCCTCCTAATGGACAGATGCCAGGATTTGGGCTTCTTTCTGCACCACCTCCATTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CAA 72 bp CAGCTGGGCTACAGTAGGCATGGAATTTGTGGGAGCTaGTGCAAGTTCAGAAGAGATTTTTACTGGGGGTGG +
Preference number: 6 (lower is better)
Translates to: QLGYSRHGICGS*CKFRRDFYWGW
Trigger: CCACCCCCAGTAAAAATCTCTTCTGAACTTGCACAAGCTCCCACAAATTCCATGCCTACTGTAGCCCAGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CAA 72 bp TATTGGCATCATTCGAGGCTGAAACTGGTCCATACTTaGATGCTGTGTGTATGCTGGCTGCTGCACGCCATC +
Preference number: 6 (lower is better)
Translates to: YWHHSRLKLVHT*MLCVCWLLHAI
Trigger: GATGGCGTGCAGCAGCCAGCATACACACAGCATCAAAGTATGGACCAGTTTCAGCCTCGAATGATGCCAATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CAA 72 bp ACTGGCAACATCCTGCTGAGTAGTCCTTTTGTCCAGTaGTCCCACCCACAGTGTGGTACTACAAACACTTGC +
Preference number: 6 (lower is better)
Translates to: TGNILLSSPFVQ*SHPQCGTTNTC
Trigger: GCAAGTGTTTGTAGTACCACACTGTGGGTGGGACAACTGGACAAAAGGACTACTCAGCAGGATGTTGCCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CAA 72 bp GCACCTCCATTCTGGGCAACTTCATTGTCAGGCTTCTaGGGGATGCCTTTCCAATCTGGGTTAAGTGTGTCA +
Preference number: 6 (lower is better)
Translates to: APPFWATSLSGF*GMPFQSGLSVS
Trigger: TGACACACTTAACCCAGATTGGAAAGGCATCCCCAAGAAGCCTGACAATGAAGTTGCCCAGAATGGAGGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 72 bp CTTCCAAACCTTTCTTGGTCTCTACCTGAGTTGAACTaGTGCCTGCTATCATTTCTAAACTGCGGTGGCTGC +
Preference number: 6 (lower is better)
Translates to: LPNLSWSLPELN*CLLSFLNCGGC
Trigger: GCAGCCACCGCAGTTTAGAAATGATAGCAGGCAGCAGTTCAACTCAGGTAGAGACCAAGAAAGGTTTGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CAA 90 bp CTTCCAAAAGATCTTCTTCCAAACCTTTCTTGGTCTCTACCTGAGTaGAACTGCTGCCTGCTATCATTTCTAAACTGCGGTGGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: LPKDLLPNLSWSLPE*NCCLLSFLNCGGCC
Trigger: GCAGCAGCCACCGCAGTTTAGAAATGATAGCAGGCAGCAGTTCAACTCAGGTAGAGACCAAGAAAGGTTTGGAAGAAGATCTTTTGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS GCA 72 bp CTTGGCCCAAAAACATCTTTATCAGTTCCAAACTGGTaGCGAGACTGTCTCACGATGGAGTCGATGACATAC +
Preference number: 6 (lower is better)
Translates to: LGPKTSLSVPNW*RDCLTMESMTY
Trigger: GTATGTCATCGACTCCATCGTGAGACAGTCTCGGCACCAGTTTGGAACTGATAAAGATGTTTTTGGGCCAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp AAGTGGAACCTGATGGTGCATCGTATCCTGCTGTATTaGCATCATTCGAGGCTGAAACTGGTCCATACTTTG +
Preference number: 6 (lower is better)
Translates to: KWNLMVHRILLY*HHSRLKLVHTL
Trigger: CAAAGTATGGACCAGTTTCAGCCTCGAATGATGCCAATACAGCAGGATACGATGCACCATCAGGTTCCACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CAA 72 bp GAAGTGGAACCTGATGGTGCATCGTATCCTGCTGTATaGGCATCATTCGAGGCTGAAACTGGTCCATACTTT +
Preference number: 6 (lower is better)
Translates to: EVEPDGASYPAV*ASFEAETGPYF
Trigger: AAAGTATGGACCAGTTTCAGCCTCGAATGATGCCAATACAGCAGGATACGATGCACCATCAGGTTCCACTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp AATCTTGGCCCAAAAACATCTTTATCAGTTCCAAACTaGTGCCGAGACTGTCTCACGATGGAGTCGATGACA +
Preference number: 6 (lower is better)
Translates to: NLGPKTSLSVPN*CRDCLTMESMT
Trigger: TGTCATCGACTCCATCGTGAGACAGTCTCGGCACCAGTTTGGAACTGATAAAGATGTTTTTGGGCCAAGATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp ACCCTACTTCCAAAAGATCTTCTTCCAAACCTTTCTTaGTCTCTACCTGAGTTGAACTGCTGCCTGCTATCA +
Preference number: 6 (lower is better)
Translates to: TLLPKDLLPNLS*SLPELNCCLLS
Trigger: TGATAGCAGGCAGCAGTTCAACTCAGGTAGAGACCAAGAAAGGTTTGGAAGAAGATCTTTTGGAAGTAGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS CCA 72 bp AGACTGTCTCACGATGGAGTCGATGACATACAGGCCTaGAACCTTATATTCTGGCTTACACTTTTTGATGAA +
Preference number: 6 (lower is better)
Translates to: RLSHDGVDDIQA*NLIFWLTLFDE
Trigger: TTCATCAAAAAGTGTAAGCCAGAATATAAGGTTCCAGGCCTGTATGTCATCGACTCCATCGTGAGACAGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2
CDS TCA 72 bp AAAAGATCTTCTTCCAAACCTTTCTTGGTCTCTACCTaGGTTGAACTGCTGCCTGCTATCATTTCTAAACTG +
Preference number: 6 (lower is better)
Translates to: KRSSSKPFLVST*VELLPAIISKL
Trigger: CAGTTTAGAAATGATAGCAGGCAGCAGTTCAACTCAGGTAGAGACCAAGAAAGGTTTGGAAGAAGATCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039280.9
ENSMUST00000163419.9
ENSMUST00000232371.2