RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SBNO1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038095

Ensembl transcript IDs: ENSMUST00000065263.12, ENSMUST00000168651.6, ENSMUST00000196329.5, ENSMUST00000196644.5, ENSMUST00000196711.5, ENSMUST00000197777.2, ENSMUST00000198420.5, ENSMUST00000199004.5, ENSMUST00000199808.5, ENSMUST00000200474.5, ENSMUST00000200674.2

Found 539 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAGCACTGCATTCTGGACACTTGGGAGCAGGTTCCTGGGAGAGGCTaGAGGCAGCAACGTGGCATCGGGGGAACAGCGTGCACTCTTCAT +
Preference number: 1 (lower is better)
Translates to: QHCILDTWEQVPGRG*RQQRGIGGTACTLH
Trigger: ATGAAGAGTGCACGCTGTTCCCCCGATGCCACGTTGCTGCCTTCAGCCTCTCCCAGGAACCTGCTCCCAAGTGTCCAGAATGCAGTGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CCA 90 bp AAAATGATGGCAGCACTGCATTCTGGACACTTGGGAGCAGGTTCCTaGGAGAGGCTGAAGGCAGCAACGTGGCATCGGGGGAACAGCGTG +
Preference number: 1 (lower is better)
Translates to: KMMAALHSGHLGAGS*ERLKAATWHRGNSV
Trigger: CACGCTGTTCCCCCGATGCCACGTTGCTGCCTTCAGCCTCTCCCAGGAACCTGCTCCCAAGTGTCCAGAATGCAGTGCTGCCATCATTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 90 bp CAGTGCCCCAGTCACTGCAACAGCAGCAAGCTCCTACTAGACGCCTaGGTGGGGTCTGGGTTAAGAGGCCAGAATCAGAAAGGCCACACT +
Preference number: 1 (lower is better)
Translates to: QCPSHCNSSKLLLDA*VGSGLRGQNQKGHT
Trigger: AGTGTGGCCTTTCTGATTCTGGCCTCTTAACCCAGACCCCACTCAGGCGTCTAGTAGGAGCTTGCTGCTGTTGCAGTGACTGGGGCACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 90 bp CTGCACCACCACCAACAATCTGACTGGAACAAGAGAGGGCAAGCCTaGAGCACAGAGGTTGCTAGGGGAGGAACATGGCCTTCCTCTCCA +
Preference number: 1 (lower is better)
Translates to: LHHHQQSDWNKRGQA*STEVARGGTWPSSP
Trigger: TGGAGAGGAAGGCCATGTTCCTCCCCTAGCAACCTCTGTGCTGCAGGCTTGCCCTCTCTTGTTCCAGTCAGATTGTTGGTGGTGGTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 90 bp TACTGTCTACCTGCAAGGGTTTCCCATCCGGCAAACAGCAGGAGCTaGGGGACTGGAGCAGCCTCAACTGAAAGCAAGAATGAGTCAGGC +
Preference number: 1 (lower is better)
Translates to: YCLPARVSHPANSRS*GTGAASTESKNESG
Trigger: GCCTGACTCATTCTTGCTTTCAGTTGAGGCTGCTCCAGTCCCTCAGCTCCTGCTGTTTGCCGGATGGGAAACCCTTGCAGGTAGACAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 90 bp CCTCAAGGAAGCTGGAGGAAAGACACGTGTCCCCTCTACTCTGTTTaGGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTACCCC +
Preference number: 1 (lower is better)
Translates to: PQGSWRKDTCPLYSV*AISFAAFFQVCPYP
Trigger: GGGGTAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGGGGACACGTGTCTTTCCTCCAGCTTCCTTGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CCA 90 bp AAGGCTAAGGCAACTCCAAGTAACAGAGGCCAGCTATCCTATGCCTaGAGTCCCCAGGGAGGGCCTAAACAAGAGTCCACTTCGTTAGTA +
Preference number: 1 (lower is better)
Translates to: KAKATPSNRGQLSYA*SPQGGPKQESTSLV
Trigger: TACTAACGAAGTGGACTCTTGTTTAGGCCCTCCCTGGGGACTCCAGGCATAGGATAGCTGGCCTCTGTTACTTGGAGTTGCCTTAGCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CCA 90 bp CTCCACAGACTTCAGGAAGGGGCTCAGTCAGACTCTAAGGCTACCTaGAAGGCTAAGGCAACTCCAAGTAACAGAGGCCAGCTATCCTAT +
Preference number: 1 (lower is better)
Translates to: LHRLQEGAQSDSKAT*KAKATPSNRGQLSY
Trigger: ATAGGATAGCTGGCCTCTGTTACTTGGAGTTGCCTTAGCCTTCCAGGTAGCCTTAGAGTCTGACTGAGCCCCTTCCTGAAGTCTGTGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 90 bp TCTCCAGAGCTCAGCATCTCTGCTTATAGCTTATCCAGCCAGAAATaGGCCCCCAAAACTGAACCTGCCTTGTGTGCTCGTGGTAGCTTC +
Preference number: 1 (lower is better)
Translates to: SPELSISAYSLSSQK*APKTEPALCARGSF
Trigger: GAAGCTACCACGAGCACACAAGGCAGGTTCAGTTTTGGGGGCTCATTTCTGGCTGGATAAGCTATAAGCAGAGATGCTGAGCTCTGGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CCA 90 bp AGCAGGACCTGCATAAACACATATCCACACACAGAACGAGGGGGCTaGCACCTTAGGACACAGAATCGTTCTCATTCCTCATCCTCTGTG +
Preference number: 1 (lower is better)
Translates to: SRTCINTYPHTERGG*HLRTQNRSHSSSSV
Trigger: CACAGAGGATGAGGAATGAGAACGATTCTGTGTCCTAAGGTGCCAGCCCCCTCGTTCTGTGTGTGGATATGTGTTTATGCAGGTCCTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 90 bp TGCCTAAATTTCTCAACAGTCATCACTGAGGCCCAATTCAAATGCTaGTACACACAGCCACAGCCGGCCTGGAGCTTGCGATCCTCTAGT +
Preference number: 1 (lower is better)
Translates to: CLNFSTVITEAQFKC*YTQPQPAWSLRSSS
Trigger: ACTAGAGGATCGCAAGCTCCAGGCCGGCTGTGGCTGTGTGTATCAGCATTTGAATTGGGCCTCAGTGATGACTGTTGAGAAATTTAGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR GCA 90 bp ACCTGTGGGGTCAGAGATATCCAACTCCTTATACACACTGTAACGTaGAGCCAGGCTATGAGCTACTGTCTACCTGCAAGGGTTTCCCAT +
Preference number: 1 (lower is better)
Translates to: TCGVRDIQLLIHTVT*SQAMSYCLPARVSH
Trigger: ATGGGAAACCCTTGCAGGTAGACAGTAGCTCATAGCCTGGCTGCACGTTACAGTGTGTATAAGGAGTTGGATATCTCTGACCCCACAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 90 bp TGTTTCATGTTGCTGGGCCGCATAGGTAACTGCCTCAAGCTGCAATaGAGACAGCCAGCCATTATCAATGGTCTCTTCAGAGATGGAGGT +
Preference number: 1 (lower is better)
Translates to: CFMLLGRIGNCLKLQ*RQPAIINGLFRDGG
Trigger: ACCTCCATCTCTGAAGAGACCATTGATAATGGCTGGCTGTCTGCATTGCAGCTTGAGGCAGTTACCTATGCGGCCCAGCAACATGAAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR GCA 90 bp CGCAATGAAACGTTCTTTGATGAAAAGGACACCCAGATCCTCATCTaGTCCAGGAGCAAGTGTCACAGCGTCATCACCATGAATGACCTG +
Preference number: 1 (lower is better)
Translates to: RNETFFDEKDTQILI*SRSKCHSVITMNDL
Trigger: CAGGTCATTCATGGTGATGACGCTGTGACACTTGCTCCTGGAGCAGATGAGGATCTGGGTGTCCTTTTCATCAAAGAACGTTTCATTGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 90 bp ACAGAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTaGAGGAAACTGAACCTACTTTACATGACAGTGGCTGAAAAAGAC +
Preference number: 1 (lower is better)
Translates to: TELSEVLGACVALRP*RKLNLLYMTVAEKD
Trigger: GTCTTTTTCAGCCACTGTCATGTAAAGTAGGTTCAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 90 bp GACTGTCCTGGAACACACGGGATAAATCGAATTCTACCTCCCCAGTaGTGGGAGAAAAGGCATGCAGTACCACTGTCTGGTTTAGAATTT +
Preference number: 1 (lower is better)
Translates to: DCPGTHGINRILPPQ*WEKRHAVPLSGLEF
Trigger: AAATTCTAAACCAGACAGTGGTACTGCATGCCTTTTCTCCCAGCACTGGGGAGGTAGAATTCGATTTATCCCGTGTGTTCCAGGACAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR GCA 90 bp CATGCATGTATGTGGTGTTTCACTCTCTGTAGCATAGGCTTGCCCTaGCTCTGCCTCCCAAACTTTGGGATGAAAAGGTGTTTATCACCA +
Preference number: 1 (lower is better)
Translates to: HACMWCFTLCSIGLP*LCLPNFGMKRCLSP
Trigger: TGGTGATAAACACCTTTTCATCCCAAAGTTTGGGAGGCAGAGGCAGGGCAAGCCTATGCTACAGAGAGTGAAACACCACATACATGCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR CCA 90 bp GCACAAGTTTATTGCAGAGACACGGTGCACCTCTCCCACCCCTCGTaGTTGATGATAAAGGTGGTTATGAGAGGAAGTAAGAGTAGTTTG +
Preference number: 1 (lower is better)
Translates to: AQVYCRDTVHLSHPS*LMIKVVMRGSKSSL
Trigger: CAAACTACTCTTACTTCCTCTCATAACCACCTTTATCATCAACCACGAGGGGTGGGAGAGGTGCACCGTGTCTCTGCAATAAACTTGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 90 bp GCTGGCACCTTAGGACACAGAATCGTTCTCATTCCTCATCCTCTGTaGCTTGGTTTCCTGAAGAAAGCAAGTTCAGTTACACAGCTCTTC +
Preference number: 1 (lower is better)
Translates to: AGTLGHRIVLIPHPL*LGFLKKASSVTQLF
Trigger: GAAGAGCTGTGTAACTGAACTTGCTTTCTTCAGGAAACCAAGTCACAGAGGATGAGGAATGAGAACGATTCTGTGTCCTAAGGTGCCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 90 bp AGCCTTGTGAGGGATTTTCATGCAAAGAATTTCTGTCTACTCAGCTaGAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGG +
Preference number: 1 (lower is better)
Translates to: SLVRDFHAKNFCLLS*SHDMECLVHFSTRG
Trigger: CCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCTGAGTAGACAGAAATTCTTTGCATGAAAATCCCTCACAAGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 90 bp GATAGCATAGAAGAGAAGATGGGCACGGAGAAGACTGCACCTGCTTaGACCTCCCTGTTTCTTTCCCTTATAGGACTCATTGGATTTAGA +
Preference number: 1 (lower is better)
Translates to: DSIEEKMGTEKTAPA*TSLFLSLIGLIGFR
Trigger: TCTAAATCCAATGAGTCCTATAAGGGAAAGAAACAGGGAGGTGCAAGCAGGTGCAGTCTTCTCCGTGCCCATCTTCTCTTCTATGCTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 90 bp AGAGGCAGGCAGATCTCTAGGGTTTCAGAACAGCCAGGGATATTATaGAAAGTCCTTGTCTGCCTCCAATCCCCAGAAAGAAAACACAAT +
Preference number: 1 (lower is better)
Translates to: RGRQISRVSEQPGIL*KVLVCLQSPERKHN
Trigger: ATTGTGTTTTCTTTCTGGGGATTGGAGGCAGACAAGGACTTTGCATAATATCCCTGGCTGTTCTGAAACCCTAGAGATCTGCCTGCCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR CCA 90 bp GCCGTAGAGATGCCCCAACTAACTGAACATTCAATGTGTGGATCCTaGCTTAATAGCAGCTTTTCTGAAGCTCCATTCCTAGGAAGTGCA +
Preference number: 1 (lower is better)
Translates to: AVEMPQLTEHSMCGS*LNSSFSEAPFLGSA
Trigger: TGCACTTCCTAGGAATGGAGCTTCAGAAAAGCTGCTATTAAGCCAGGATCCACACATTGAATGTTCAGTTAGTTGGGGCATCTCTACGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CCA 90 bp CACCTTAGGACACAGAATCGTTCTCATTCCTCATCCTCTGTGACTTaGTTTCCTGAAGAAAGCAAGTTCAGTTACACAGCTCTTCCTCAG +
Preference number: 1 (lower is better)
Translates to: HLRTQNRSHSSSSVT*FPEESKFSYTALPQ
Trigger: CTGAGGAAGAGCTGTGTAACTGAACTTGCTTTCTTCAGGAAACCAAGTCACAGAGGATGAGGAATGAGAACGATTCTGTGTCCTAAGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CCA 90 bp ACCTCTGCGTTCCACAGCTTGGATAAAATCACTAAATTCTCTGAATaGAGTTCCCTCACCCCATATTCCAAGACGGTTCATGTAGGCCAT +
Preference number: 1 (lower is better)
Translates to: TSAFHSLDKITKFSE*SSLTPYSKTVHVGH
Trigger: ATGGCCTACATGAACCGTCTTGGAATATGGGGTGAGGGAACTCCATTCAGAGAATTTAGTGATTTTATCCAAGCTGTGGAACGCAGAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000199004.5
ENSMUST00000200674.2
3UTR TCA 90 bp CCAATGCAGTTTTACAGCAAACTAAATCCTAGAAACTTGAGAGAATaGGAGCCCAAGCGCTCCATCAAGTCTCTGCCACTAAACACACCT +
Preference number: 1 (lower is better)
Translates to: PMQFYSKLNPRNLRE*EPKRSIKSLPLNTP
Trigger: AGGTGTGTTTAGTGGCAGAGACTTGATGGAGCGCTTGGGCTCTCATTCTCTCAAGTTTCTAGGATTTAGTTTGCTGTAAAACTGCATTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 90 bp GACACAGAATCGTTCTCATTCCTCATCCTCTGTGACTTGGTTTCCTaGAGAAAGCAAGTTCAGTTACACAGCTCTTCCTCAGGCTTTTAC +
Preference number: 1 (lower is better)
Translates to: DTESFSFLILCDLVS*RKQVQLHSSSSGFY
Trigger: GTAAAAGCCTGAGGAAGAGCTGTGTAACTGAACTTGCTTTCTTCAGGAAACCAAGTCACAGAGGATGAGGAATGAGAACGATTCTGTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 90 bp AGCTTTCTGTCTGTCCCACCACACTACCTACCTTTAATTCTGTTTTaGAAGGGTTGTCAGATGCCTGGTATCTGTGGACTTTTCCTCACT +
Preference number: 1 (lower is better)
Translates to: SFLSVPPHYLPLILF*KGCQMPGICGLFLT
Trigger: AGTGAGGAAAAGTCCACAGATACCAGGCATCTGACAACCCTTTCAAAACAGAATTAAAGGTAGGTAGTGTGGTGGGACAGACAGAAAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 90 bp CAGCAGTGTGTGTTGGCGATGTGGGTAACAAGACCCCCACAGCTGTaGGGCAAAGAAGAAATCTTAAACACAAAACTATTTACTCAGCTA +
Preference number: 1 (lower is better)
Translates to: QQCVLAMWVTRPPQL*GKEEILNTKLFTQL
Trigger: TAGCTGAGTAAATAGTTTTGTGTTTAAGATTTCTTCTTTGCCTCACAGCTGTGGGGGTCTTGTTACCCACATCGCCAACACACACTGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 90 bp AGAAGAACTTCCTCAATTTTGAAGGTCACTCCAGTAAAGCTCAGCTaGCGTGCAATGTACATTCCTCTAAGCTTCATATCCATAGCAACG +
Preference number: 1 (lower is better)
Translates to: RRTSSILKVTPVKLS*RAMYIPLSFISIAT
Trigger: CGTTGCTATGGATATGAAGCTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTTACTGGAGTGACCTTCAAAATTGAGGAAGTTCTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199004.5
ENSMUST00000200674.2
3UTR TCA 90 bp CTTTCTCACCAACTTGCATTTATAGAAATACTTTCACTGCTTTTCTaGCTGCACCACCACCAACAATCTGACTGGAACAAGAGAGGGCAA +
Preference number: 1 (lower is better)
Translates to: LSHQLAFIEILSLLF*LHHHQQSDWNKRGQ
Trigger: TTGCCCTCTCTTGTTCCAGTCAGATTGTTGGTGGTGGTGCAGTCAGAAAAGCAGTGAAAGTATTTCTATAAATGCAAGTTGGTGAGAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 90 bp GATTTCTTCATTCTCTGCTCAGCATCAATCAAATCTGCAGCTTGTTaGAATCGCTCTCTAGCGATAACCCACAGCTTGACTGCTTTGTTA +
Preference number: 1 (lower is better)
Translates to: DFFILCSASIKSAAC*NRSLAITHSLTALL
Trigger: TAACAAAGCAGTCAAGCTGTGGGTTATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTTGATTGATGCTGAGCAGAGAATGAAGAAATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
3UTR GCA 90 bp TTTCAAAGACATGCATCGTCAACAAAAGCTACAAATGAACCTGAATaGATGGCACGCAACCCTTCACTTCATGCTGTAGGAAACATTGTG +
Preference number: 1 (lower is better)
Translates to: FQRHASSTKATNEPE*MARNPSLHAVGNIV
Trigger: CACAATGTTTCCTACAGCATGAAGTGAAGGGTTGCGTGCCATGCATTCAGGTTCATTTGTAGCTTTTGTTGACGATGCATGTCTTTGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 90 bp GTAAAGAGAGCAAACTGCTTAGCCTGCCTAGCTTTCTCACCAACTTaGATTTATAGAAATACTTTCACTGCTTTTCTGACTGCACCACCA +
Preference number: 1 (lower is better)
Translates to: VKRANCLACLAFSPT*IYRNTFTAFLTAPP
Trigger: TGGTGGTGCAGTCAGAAAAGCAGTGAAAGTATTTCTATAAATGCAAGTTGGTGAGAAAGCTAGGCAGGCTAAGCAGTTTGCTCTCTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 90 bp AACTTCCTCAATTTTGAAGGTCACTCCAGTAAAGCTCAGCTGCCGTaGAATGTACATTCCTCTAAGCTTCATATCCATAGCAACGATTTC +
Preference number: 1 (lower is better)
Translates to: NFLNFEGHSSKAQLP*NVHSSKLHIHSNDF
Trigger: GAAATCGTTGCTATGGATATGAAGCTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTTACTGGAGTGACCTTCAAAATTGAGGAAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199004.5
ENSMUST00000200674.2
3UTR TCA 90 bp CAGTATAGAAAACAGATTACGGACGTTTGTTGTAAAGTAAATCTCTaGCTGTCACCTGTGGGGTCAGAGATATCCAACTCCTTATACACA +
Preference number: 1 (lower is better)
Translates to: QYRKQITDVCCKVNL*LSPVGSEISNSLYT
Trigger: TGTGTATAAGGAGTTGGATATCTCTGACCCCACAGGTGACAGTCAGAGATTTACTTTACAACAAACGTCCGTAATCTGTTTTCTATACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 90 bp CAATGTTTCTCTCCATGTGACTTCTGTGGGAATCTTGATTACACATaGTTTCAAAGACATGCATCGTCAACAAAAGCTACAAATGAACCT +
Preference number: 1 (lower is better)
Translates to: QCFSPCDFCGNLDYT*FQRHASSTKATNEP
Trigger: AGGTTCATTTGTAGCTTTTGTTGACGATGCATGTCTTTGAAAGCATGTGTAATCAAGATTCCCACAGAAGTCACATGGAGAGAAACATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp ATCCACACACAGAACGAGGGGGCTGGCACCTTAGGACACAGAATCGTTCTCATTAGGCCAGCTATCCTATaGCTGGAGTCCCCAGGGAGG +
Preference number: 2 (lower is better)
Translates to: IHTQNEGAGTLGHRIVLIRPAIL*LESPGR
Trigger: CCTCCCTGGGGACTCCAGGCATAGGATAGCTGGCCT...AATGAGAACGATTCTGTGTCCTAAGGTGCCAGCCCCCTCGTTCTGTGTGTGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGCAGCTATCCTATGCCTaGAGTCCCCAGGGAGGGCCT +
Preference number: 2 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKQLSYA*SPQGGP
Trigger: AGGCCCTCCCTGGGGACTCCAGGCATAGGATAGCTG...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTAACACTCGGGTCTGCTaGTCAGAGCTGCACCGCTCA +
Preference number: 2 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPNTRVC*SELHRS
Trigger: TGAGCGGTGCAGCTCTGAGCAGCAGACCCGAGTGTT...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGTCCTGGGTGCATGTGTaGCACTCAGACCCTGCAGGA +
Preference number: 2 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKSWVHV*HSDPAG
Trigger: TCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGA...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTCCCCTCTACTCTGTTTaGGCCATCAGCTTTGCTGCC +
Preference number: 2 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPPLYSV*AISFAA
Trigger: GGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGGGG...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR TCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGAGGGGGACTGCTTGCTaGTCACTGCCTGAGATACAA +
Preference number: 2 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKRGTAC*SLPEIQ
Trigger: TTGTATCTCAGGCAGTGATCAGCAAGCAGTCCCCCT...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR TCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTACAGTGGGTAAAGGCTaGCCAGCTTTCTGTCTGTCC +
Preference number: 2 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPTVGKG*PAFCLS
Trigger: GGACAGACAGAAAGCTGGTCAGCCTTTACCCACTGT...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGAGGCCAGCTATCCTATaGCTGGAGTCCCCAGGGAGG +
Preference number: 2 (lower is better)
Translates to: LFTKKTREILQVLLWKHQRPAIL*LESPGR
Trigger: CCTCCCTGGGGACTCCAGGCATAGGATAGCTGGCCT...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTATTGCAGAGACACGGTaGACCTCTCCCACCCCTCGT +
Preference number: 2 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFIAETR*TSPTPR
Trigger: ACGAGGGGTGGGAGAGGTGCACCGTGTCTCTGCAAT...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTAGAGTGCAGAGAGGCTaGGCACCAATTCCAGATGTC +
Preference number: 2 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPRVQRG*APIPDV
Trigger: GACATCTGGAATTGGTGCCCAGCCTCTCTGCACTCT...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTCTCTCCCCAGGAGACTaGCATGCTGACTCAGTCCTG +
Preference number: 2 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFLSPGD*HADSVL
Trigger: CAGGACTGAGTCAGCATGCCAGTCTCCTGGGGAGAG...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR TCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTAGAAACTTGAGAGAATaGGAGCCCAAGCGCTCCATC +
Preference number: 2 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPRNLRE*EPKRSI
Trigger: GATGGAGCGCTTGGGCTCTCATTCTCTCAAGTTTCT...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR TCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGAGAAACTTGAGAGAATaGGAGCCCAAGCGCTCCATC +
Preference number: 2 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKRNLRE*EPKRSI
Trigger: GATGGAGCGCTTGGGCTCTCATTCTCTCAAGTTTCT...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR TCA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGTGGCTGAAAAAGACATaGCTGCCAACGAGTGACTTT +
Preference number: 2 (lower is better)
Translates to: ELSEVLGACVALRPCRKLWLKKT*LPTSDF
Trigger: AAAGTCACTCGTTGGCAGTCATGTCTTTTTCAGCCA...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR TCA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTATGAGCCCCCAAAACTaGACCTGCCTTGTGTGCTCG +
Preference number: 2 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFMSPQN*TCLVCS
Trigger: CGAGCACACAAGGCAGGTTCAGTTTTGGGGGCTCAT...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGAAGAGAGGGCAAGCCTaGAGCACAGAGGTTGCTAGG +
Preference number: 2 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGKRGQA*STEVAR
Trigger: CCTAGCAACCTCTGTGCTGCAGGCTTGCCCTCTCTT...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGGACTCTAAGGCTACCTaGAAGGCTAAGGCAACTCCA +
Preference number: 2 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKDSKAT*KAKATP
Trigger: TGGAGTTGCCTTAGCCTTCCAGGTAGCCTTAGAGTC...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTGACTCTAAGGCTACCTaGAAGGCTAAGGCAACTCCA +
Preference number: 2 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPDSKAT*KAKATP
Trigger: TGGAGTTGCCTTAGCCTTCCAGGTAGCCTTAGAGTC...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAATCCTGGGTGCATGTGTaGCACTCAGACCCTGCAGGA +
Preference number: 2 (lower is better)
Translates to: PLHLLSNASHSGPSANMESWVHV*HSDPAG
Trigger: TCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGA...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGGCTGCACCGCTCAAGTaGGAGAAGGCATCTCAGAGG +
Preference number: 2 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKAAPLK*EKASQR
Trigger: CCTCTGAGATGCCTTCTCCCACTTGAGCGGTGCAGC...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGGCTAGGGGAGGAACATaGCCTTCCTCTCCAGCAAGT +
Preference number: 2 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGARGGT*PSSPAS
Trigger: ACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCTAGC...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 90 bp ATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTATaGCAGAGACACGGTGCACCTCTCCCACCCCTCGTGGTTGATGAT +
Preference number: 2 (lower is better)
Translates to: IKYPLHKEVEPGTSL*QRHGAPLPPLVVDD
Trigger: ATCATCAACCACGAGGGGTGGGAGAGGTGCACCGTGTCTCTGCAATAAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR TCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAAGGGGGACTGCTTGCTaGTCACTGCCTGAGATACAA +
Preference number: 2 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTRGTAC*SLPEIQ
Trigger: TTGTATCTCAGGCAGTGATCAGCAAGCAGTCCCCCT...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTGAGAAATCCTGCAGGTaGTGCTTTGGAAACACCAGA +
Preference number: 2 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPEKSCR*CFGNTR
Trigger: TCTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTC...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAAAGAGAGGGCAAGCCTaGAGCACAGAGGTTGCTAGG +
Preference number: 2 (lower is better)
Translates to: PLHLLSNASHSGPSANMEKRGQA*STEVAR
Trigger: CCTAGCAACCTCTGTGCTGCAGGCTTGCCCTCTCTT...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp ATCCACACACAGAACGAGGGGGCTGGCACCTTAGGACACAGAATCGTTCTCATTAAGGGAAAGCCAGTCTaGGAAGTTCCAAGCCTTTTC +
Preference number: 2 (lower is better)
Translates to: IHTQNEGAGTLGHRIVLIKGKPV*EVPSLF
Trigger: GAAAAGGCTTGGAACTTCCCAGACTGGCTTTCCCTT...AATGAGAACGATTCTGTGTCCTAAGGTGCCAGCCCCCTCGTTCTGTGTGTGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACAAAAGTTGCATCCACTaGGCAAAATGTGCCCAAGAA +
Preference number: 2 (lower is better)
Translates to: QRLGKGGPILFSGATKGDKSCIH*AKCAQE
Trigger: TTCTTGGGCACATTTTGCCCAGTGGATGCAACTTTT...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAAGAGTGCAGAGAGGCTaGGCACCAATTCCAGATGTC +
Preference number: 2 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTRVQRG*APIPDV
Trigger: GACATCTGGAATTGGTGCCCAGCCTCTCTGCACTCT...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 90 bp GCAGACAGCCAGCCATTATCAATGGTCTCTTCAGAGATGGAGGTTTaGTACCAAACATCAGGAGGAGTGACACTGGACAGAGAGCTAGTC +
Preference number: 2 (lower is better)
Translates to: ADSQPLSMVSSEMEV*YQTSGGVTLDRELV
Trigger: GACTAGCTCTCTGTCCAGTGTCACTCCTCCTGATGTTTGGTACAAAACCTCCATCTCTGAAGAGACCATTGATAATGGCTGGCTGTCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR CAA 90 bp CGTGTGCATGCATGTATGTGGTGTTTCACTCTCTGTAGCATAGGCTaGCCCTGCCTCTGCCTCCCAAACTTTGGGATGAAAAGGTGTTTA +
Preference number: 2 (lower is better)
Translates to: RVHACMWCFTLCSIG*PCLCLPNFGMKRCL
Trigger: TAAACACCTTTTCATCCCAAAGTTTGGGAGGCAGAGGCAGGGCAAGCCTATGCTACAGAGAGTGAAACACCACATACATGCATGCACACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR-3UTR TCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGACAGCGTCATCACCATaGATGACCTGTTCACTAAGA +
Preference number: 2 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKTASSP*MTCSLR
Trigger: TCTTAGTGAACAGGTCATTCATGGTGATGACGCTGT...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR TCA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGACAGTGGGTAAAGGCTaGCCAGCTTTCTGTCTGTCC +
Preference number: 2 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKTVGKG*PAFCLS
Trigger: GGACAGACAGAAAGCTGGTCAGCCTTTACCCACTGT...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGCAACCCTTCACTTCATaGTGTAGGAAACATTGTGTA +
Preference number: 2 (lower is better)
Translates to: ELSEVLGACVALRPCRKLQPFTS*CRKHCV
Trigger: TACACAATGTTTCCTACAGCATGAAGTGAAGGGTTG...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGAAATGCAGTACCCAATaGCAGACATCTCCAATGTTT +
Preference number: 2 (lower is better)
Translates to: ELSEVLGACVALRPCRKLKCSTQ*QTSPMF
Trigger: AAACATTGGAGATGTCTGGCATTGGGTACTGCATTT...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGACCCAGATCCTCATCTaGTCCAGGAGCAAGTGTCAC +
Preference number: 2 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKTQILI*SRSKCH
Trigger: GTGACACTTGCTCCTGGAGCAGATGAGGATCTGGGT...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp GAAGCTCTAAAACAGCCAAGCCTGTCTTGGTTGGCTTTGAAGAACCAACAGGACTGCCTCAAGCTGCAATaGAGACAGCCAGCCATTATC +
Preference number: 2 (lower is better)
Translates to: EALKQPSLSWLALKNQQDCLKLQ*RQPAII
Trigger: GATAATGGCTGGCTGTCTGCATTGCAGCTTGAGGCA...GTCCTGTTGGTTCTTCAAAGCCAACCAAGACAGGCTTGGCTGTTTTAGAGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR CAA 90 bp AGGTTGCTAGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTaGAGCAGCTGGAACCTAGGAGTGATTTTCAGCACAAACTACTGT +
Preference number: 2 (lower is better)
Translates to: RLLGEEHGLPLQQVY*SSWNLGVIFSTNYC
Trigger: ACAGTAGTTTGTGCTGAAAATCACTCCTAGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCTAGCAACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTaGCACAAGGAGGTAGAACCCGGCACAAGTTTATTGCAGAGACAC +
Preference number: 2 (lower is better)
Translates to: CQIKKEAQSPCIKYP*HKEVEPGTSLLQRH
Trigger: GTGTCTCTGCAATAAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR TCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGCTTTCACTGCTTTTCTaGCTGCACCACCACCAACAA +
Preference number: 2 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGLSLLF*LHHHQQ
Trigger: TTGTTGGTGGTGGTGCAGTCAGAAAAGCAGTGAAAG...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGGCTTTTACTTTACCATaGCCAAGGAAGCTGAACAGT +
Preference number: 2 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKAFTLP*PRKLNS
Trigger: ACTGTTCAGCTTCCTTGGGCATGGTAAAGTAAAAGC...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTGCAAACTGCTTAGCCTaGCTAGCTTTCTCACCAACT +
Preference number: 2 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFANCLA*LAFSPT
Trigger: AGTTGGTGAGAAAGCTAGGCAGGCTAAGCAGTTTGC...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 90 bp CAAGTTTATTGCAGAGACACGGTGCACCTCTCCCACCCCTCGTGGTaGATGATAAAGGTGGTTATGAGAGGAAGTAAGAGTAGTTTGCAA +
Preference number: 2 (lower is better)
Translates to: QVYCRDTVHLSHPSW*MIKVVMRGSKSSLQ
Trigger: TTGCAAACTACTCTTACTTCCTCTCATAACCACCTTTATCATCAACCACGAGGGGTGGGAGAGGTGCACCGTGTCTCTGCAATAAACTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR TCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGTGTGACTTGGTTTCCTaGAGAAAGCAAGTTCAGTTA +
Preference number: 2 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKCDLVS*RKQVQL
Trigger: TAACTGAACTTGCTTTCTTCAGGAAACCAAGTCACA...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR TCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGACAGCGTCATCACCATaGATGACCTGTTCACTAAGA +
Preference number: 2 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGTASSP*MTCSLR
Trigger: TCTTAGTGAACAGGTCATTCATGGTGATGACGCTGT...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACACCACTGGGCAAAATGTaGCCAAGAACAGAAACCATT +
Preference number: 2 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTPLGKM*PRTETI
Trigger: AATGGTTTCTGTTCTTGGGCACATTTTGCCCAGTGG...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGAGACTAGAGAAATCCTaGAGGTGCTGCTTTGGAAAC +
Preference number: 2 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGRLEKS*RCCFGN
Trigger: GTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCT...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGAAGGGAAAGCCAGTCTaGGAAGTTCCAAGCCTTTTC +
Preference number: 2 (lower is better)
Translates to: LFTKKTREILQVLLWKHQKGKPV*EVPSLF
Trigger: GAAAAGGCTTGGAACTTCCCAGACTGGCTTTCCCTT...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 90 bp CAGCTTTCTGTCTGTCCCACCACACTACCTACCTTTAATTCTGTTTaGAAAGGGTTGTCAGATGCCTGGTATCTGTGGACTTTTCCTCAC +
Preference number: 2 (lower is better)
Translates to: QLSVCPTTLPTFNSV*KGLSDAWYLWTFPH
Trigger: GTGAGGAAAAGTCCACAGATACCAGGCATCTGACAACCCTTTCAAAACAGAATTAAAGGTAGGTAGTGTGGTGGGACAGACAGAAAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR TCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAGTACGGTTTCTGGTTTaGATGACAAAGCAGATTCAG +
Preference number: 2 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTVRFLV*MTKQIQ
Trigger: CTGAATCTGCTTTGTCATTCAAACCAGAAACCGTAC...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTAATGAGGATAAAAGTTaGATCCACTGGGCAAAATGT +
Preference number: 2 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPNEDKS*IHWAKC
Trigger: ACATTTTGCCCAGTGGATGCAACTTTTATCCTCATT...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTAAAAGTTGCATCCACTaGGCAAAATGTGCCCAAGAA +
Preference number: 2 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFKSCIH*AKCAQE
Trigger: TTCTTGGGCACATTTTGCCCAGTGGATGCAACTTTT...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTACTCTTGTCATCACTTaGATGACAACTGTCTCCTGT +
Preference number: 2 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFTLVIT*MTTVSC
Trigger: ACAGGAGACAGTTGTCATCCAAGTGATGACAAGAGT...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAACTCTTGTCATCACTTaGATGACAACTGTCTCCTGT +
Preference number: 2 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTTLVIT*MTTVSC
Trigger: ACAGGAGACAGTTGTCATCCAAGTGATGACAAGAGT...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR TCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACATGTGACTTGGTTTCCTaGAGAAAGCAAGTTCAGTTA +
Preference number: 2 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTCDLVS*RKQVQL
Trigger: TAACTGAACTTGCTTTCTTCAGGAAACCAAGTCACA...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR TCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACACCCAGACTTTACATCTaGCTTTGCTTCAAAAGGTAT +
Preference number: 2 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTPRLYI*LCFKRY
Trigger: ATACCTTTTGAAGCAAAGTCAGATGTAAAGTCTGGG...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAGCTTTTACTTTACCATaGCCAAGGAAGCTGAACAGT +
Preference number: 2 (lower is better)
Translates to: PLHLLSNASHSGPSANMEAFTLP*PRKLNS
Trigger: ACTGTTCAGCTTCCTTGGGCATGGTAAAGTAAAAGC...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp TTGAAGGTCACTCCAGTAAAGCTCAGCTGCCGTGCAATGTACATTCCTCTAAGCACTAAATTCTCTGAATaGAGTTCCCTCACCCCATAT +
Preference number: 2 (lower is better)
Translates to: LKVTPVKLSCRAMYIPLSTKFSE*SSLTPY
Trigger: ATATGGGGTGAGGGAACTCCATTCAGAGAATTTAGT...GCTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTTACTGGAGTGACCTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199004.5
ENSMUST00000200674.2
3UTR CAA 90 bp GTCTGTCCCACCACACTACCTACCTTTAATTCTGTTTTGAAAGGGTaGTCAGATGCCTGGTATCTGTGGACTTTTCCTCACTCAACATTA +
Preference number: 2 (lower is better)
Translates to: VCPTTLPTFNSVLKG*SDAWYLWTFPHSTL
Trigger: TAATGTTGAGTGAGGAAAAGTCCACAGATACCAGGCATCTGACAACCCTTTCAAAACAGAATTAAAGGTAGGTAGTGTGGTGGGACAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 90 bp CCCTGCTCAGTGAAGCTGACACACTTGTATTGCATGAGACTGGATTaGAAAGTTACATATCAAAATGATGGCAGCACTGCATTCTGGACA +
Preference number: 2 (lower is better)
Translates to: PCSVKLTHLYCMRLD*KVTYQNDGSTAFWT
Trigger: TGTCCAGAATGCAGTGCTGCCATCATTTTGATATGTAACTTTCAAATCCAGTCTCATGCAATACAAGTGTGTCAGCTTCACTGAGCAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 90 bp CGATTTCTTCATTCTCTGCTCAGCATCAATCAAATCTGCAGCTTGTaGAAATCGCTCTCTAGCGATAACCCACAGCTTGACTGCTTTGTT +
Preference number: 2 (lower is better)
Translates to: RFLHSLLSINQICSL*KSLSSDNPQLDCFV
Trigger: AACAAAGCAGTCAAGCTGTGGGTTATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTTGATTGATGCTGAGCAGAGAATGAAGAAATCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
3UTR CAA 90 bp CATCGATTTCTTCATTCTCTGCTCAGCATCAATCAAATCTGCAGCTaGTTGAAATCGCTCTCTAGCGATAACCCACAGCTTGACTGCTTT +
Preference number: 2 (lower is better)
Translates to: HRFLHSLLSINQICS*LKSLSSDNPQLDCF
Trigger: AAAGCAGTCAAGCTGTGGGTTATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTTGATTGATGCTGAGCAGAGAATGAAGAAATCGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
3UTR-3UTR GCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAAATGAGGATAAAAGTTaGATCCACTGGGCAAAATGT +
Preference number: 2 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTNEDKS*IHWAKC
Trigger: ACATTTTGCCCAGTGGATGCAACTTTTATCCTCATT...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp GAAGCTCTAAAACAGCCAAGCCTGTCTTGGTTGGCTTTGAAGAACCAACAGGACCTGCGTTCCACAGCTTaGATAAAATCACTAAATTCT +
Preference number: 2 (lower is better)
Translates to: EALKQPSLSWLALKNQQDLRSTA*IKSLNS
Trigger: AGAATTTAGTGATTTTATCCAAGCTGTGGAACGCAG...GTCCTGTTGGTTCTTCAAAGCCAACCAAGACAGGCTTGGCTGTTTTAGAGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR CAA 90 bp CGATTTCTTCATTCTCTGCTCAGCATCAATCAAATCTGCAGCTTGTaGAAATCGCTCTCTAGCGATAACCCACTGAAAACACAGACAACA +
Preference number: 2 (lower is better)
Translates to: RFLHSLLSINQICSL*KSLSSDNPLKTQTT
Trigger: TGTTGTCTGTGTTTTCAGTGGGTTATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTTGATTGATGCTGAGCAGAGAATGAAGAAATCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR CAA 90 bp CATCGATTTCTTCATTCTCTGCTCAGCATCAATCAAATCTGCAGCTaGTTGAAATCGCTCTCTAGCGATAACCCACTGAAAACACAGACA +
Preference number: 2 (lower is better)
Translates to: HRFLHSLLSINQICS*LKSLSSDNPLKTQT
Trigger: TGTCTGTGTTTTCAGTGGGTTATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTTGATTGATGCTGAGCAGAGAATGAAGAAATCGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR-3UTR GCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAAATCTTGATTACACATaGTTTCAAAGACATGCATCG +
Preference number: 2 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTNLDYT*FQRHAS
Trigger: CGATGCATGTCTTTGAAAGCATGTGTAATCAAGATT...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGAATCTTGATTACACATaGTTTCAAAGACATGCATCG +
Preference number: 2 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGNLDYT*FQRHAS
Trigger: CGATGCATGTCTTTGAAAGCATGTGTAATCAAGATT...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CCA 90 bp AGTAAAGCTCAGCTGCCGTGCAATGTACATTCCTCTAAGCTTCATATCCATAGCACTAAATTCTCTGAATaGAGTTCCCTCACCCCATAT +
Preference number: 2 (lower is better)
Translates to: SKAQLPCNVHSSKLHIHSTKFSE*SSLTPY
Trigger: ATATGGGGTGAGGGAACTCCATTCAGAGAATTTAGT...GCTATGGATATGAAGCTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199004.5
ENSMUST00000200674.2
3UTR-3UTR CCA 90 bp GAAATAACCCAACACATTAAAGTAGTTTGGGCTTCATTTACTCTATGTGAGCTACTACCTCCCCAGTGCTaGGAGAAAAGGCATGCAGTA +
Preference number: 2 (lower is better)
Translates to: EITQHIKVVWASFTLCELLPPQC*EKRHAV
Trigger: TACTGCATGCCTTTTCTCCCAGCACTGGGGAGGTAG...TAGCTCACATAGAGTAAATGAAGCCCAAACTACTTTAATGTGTTGGGTTATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR CAA 90 bp CCAGACATCTCCAATGTTTCTCTCCATGTGACTTCTGTGGGAATCTaGATTACACATGCTTTCAAAGACATGCATCGTCAACAAAAGCTA +
Preference number: 2 (lower is better)
Translates to: PDISNVSLHVTSVGI*ITHAFKDMHRQQKL
Trigger: TAGCTTTTGTTGACGATGCATGTCTTTGAAAGCATGTGTAATCAAGATTCCCACAGAAGTCACATGGAGAGAAACATTGGAGATGTCTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 90 bp AGCCTGTCTTGGTTGGCTTTGAAGAACCAACAGGACATAAGTTTTTaGCTTTGTGACATTCATCAAACACTATCACTCCATCGAAGTCGT +
Preference number: 2 (lower is better)
Translates to: SLSWLALKNQQDISF*LCDIHQTLSLHRSR
Trigger: ACGACTTCGATGGAGTGATAGTGTTTGATGAATGTCACAAAGCAAAAAACTTATGTCCTGTTGGTTCTTCAAAGCCAACCAAGACAGGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR-3UTR TCA 90 bp ATCAATCAAATCTGCAGCTTGTTGAAATCGCTCTCTAGCGATAACCCACTGAAAAAATCTGCAGCTTGTTaGAATCGCTCTCTAGCGATA +
Preference number: 2 (lower is better)
Translates to: INQICSLLKSLSSDNPLKKSAAC*NRSLAI
Trigger: TATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTT...TTTCAGTGGGTTATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTTGATTGAT
41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR-3UTR TCA 90 bp GAAATAACCCAACACATTAAAGTAGTTTGGGCTTCATTTACTCTATGTGAGCTAGCAGGAAGACTGCTATaGGTTGATCCTACACAACGC +
Preference number: 2 (lower is better)
Translates to: EITQHIKVVWASFTLCELAGRLL*VDPTQR
Trigger: GCGTTGTGTAGGATCAACTCATAGCAGTCTTCCTGC...TAGCTCACATAGAGTAAATGAAGCCCAAACTACTTTAATGTGTTGGGTTATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR-3UTR GCA 90 bp AACCCACAGCTTGACTGCTTTGTTATACATTTTCACATAGCTTTGAGAAAGAAGCCAGTAAAGCTCAGCTaGCGTGCAATGTACATTCCT +
Preference number: 2 (lower is better)
Translates to: NPQLDCFVIHFHIALRKKPVKLS*RAMYIP
Trigger: AGGAATGTACATTGCACGGCAGCTGAGCTTTACTGG...CTTCTTTCTCAAAGCTATGTGAAAATGTATAACAAAGCAGTCAAGCTGTGGGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
3UTR-3UTR CCA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGTTGCTCTGCATGAAATaGGTGTACATCATAATTAAC +
Preference number: 2 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKLLCMK*VYIIIN
Trigger: GTTAATTATGATGTACACCCATTTCATGCAGAGCAA...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 90 bp GAGGAGGAAATTTCTGAGGGAACAATCGGTGACAGACCCTCATTCTaGACTACTAACTTACAAAGACAGCCAAATGTAGACAATTTTCAA +
Preference number: 2 (lower is better)
Translates to: EEEISEGTIGDRPSF*TTNLQRQPNVDNFQ
Trigger: TTGAAAATTGTCTACATTTGGCTGTCTTTGTAAGTTAGTAGTCAAGAATGAGGGTCTGTCACCGATTGTTCCCTCAGAAATTTCCTCCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR GCA 90 bp CAGCTTGACTGCTTTGTTATACATTTTCACATAGCTTTGAGAAAGAAGAACTTCTCATGTAGGCCATGTTaGGTGGTTCAGAAGCACCTA +
Preference number: 2 (lower is better)
Translates to: QLDCFVIHFHIALRKKNFSCRPC*VVQKHL
Trigger: TAGGTGCTTCTGAACCACGCAACATGGCCTACATGA...GAAGTTCTTCTTTCTCAAAGCTATGTGAAAATGTATAACAAAGCAGTCAAGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
3UTR-3UTR GCA 90 bp CAGCTTGACTGCTTTGTTATACATTTTCACATAGCTTTGAGAAAGAAGAACTTCCCAGTAAAGCTCAGCTaGCGTGCAATGTACATTCCT +
Preference number: 2 (lower is better)
Translates to: QLDCFVIHFHIALRKKNFPVKLS*RAMYIP
Trigger: AGGAATGTACATTGCACGGCAGCTGAGCTTTACTGG...GAAGTTCTTCTTTCTCAAAGCTATGTGAAAATGTATAACAAAGCAGTCAAGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199004.5
ENSMUST00000200674.2
3UTR-3UTR CCA 90 bp AAATCGCTCTCTAGCGATAACCCACAGCTTGACTGCTTTGTTATACATTTTCACCTGCGTTCCACAGCTTaGATAAAATCACTAAATTCT +
Preference number: 2 (lower is better)
Translates to: KSLSSDNPQLDCFVIHFHLRSTA*IKSLNS
Trigger: AGAATTTAGTGATTTTATCCAAGCTGTGGAACGCAG...GTGAAAATGTATAACAAAGCAGTCAAGCTGTGGGTTATCGCTAGAGAGCGATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
3UTR-3UTR CCA 90 bp ATCAATCAAATCTGCAGCTTGTTGAAATCGCTCTCTAGCGATAACCCACTGAAACACTCCCATTGTGTTTaGAAGAAATCTTACCATATT +
Preference number: 2 (lower is better)
Translates to: INQICSLLKSLSSDNPLKHSHCV*KKSYHI
Trigger: AATATGGTAAGATTTCTTCCAAACACAATGGGAGTG...TTTCAGTGGGTTATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTTGATTGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR CCA 72 bp CACTCGGGTCTGCTGCTCAGAGCTGCACCGCTCAAGTaGGAGAAGGCATCTCAGAGGCTAGGGAGACAGAGT +
Preference number: 3 (lower is better)
Translates to: HSGLLLRAAPLK*EKASQRLGRQS
Trigger: ACTCTGTCTCCCTAGCCTCTGAGATGCCTTCTCCCACTTGAGCGGTGCAGCTCTGAGCAGCAGACCCGAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 72 bp AAGGCCACACTAACTCTCCCCAGGAGACTGGCATGCTaGCTCAGTCCTGAGGGAGCCTCCAGTGCAAAAAGC +
Preference number: 3 (lower is better)
Translates to: KATLTLPRRLAC*LSPEGASSAKS
Trigger: GCTTTTTGCACTGGAGGCTCCCTCAGGACTGAGTCAGCATGCCAGTCTCCTGGGGAGAGTTAGTGTGGCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CAA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGCCTGCAGCACAGAGGTaGCTAGGGGAGGAACATGGC +
Preference number: 3 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKPAAQR*LGEEHG
Trigger: GCCATGTTCCTCCCCTAGCAACCTCTGTGCTGCAGG...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 72 bp CCTGCAAGGGTTTCCCATCCGGCAAACAGCAGGAGCTaGGGGACTGGAGCAGCCTCAACTGAAAGCAAGAAT +
Preference number: 3 (lower is better)
Translates to: PARVSHPANSRS*GTGAASTESKN
Trigger: ATTCTTGCTTTCAGTTGAGGCTGCTCCAGTCCCTCAGCTCCTGCTGTTTGCCGGATGGGAAACCCTTGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp CACCAACAATCTGACTGGAACAAGAGAGGGCAAGCCTaGAGCACAGAGGTTGCTAGGGGAGGAACATGGCCT +
Preference number: 3 (lower is better)
Translates to: HQQSDWNKRGQA*STEVARGGTWP
Trigger: AGGCCATGTTCCTCCCCTAGCAACCTCTGTGCTGCAGGCTTGCCCTCTCTTGTTCCAGTCAGATTGTTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp CATGACTGCCAACGAGTGACTTTTGTAGGGGCAGAGTaGAGAGAGGCTGGGCACCAATTCCAGATGTCTCAC +
Preference number: 3 (lower is better)
Translates to: HDCQRVTFVGAE*REAGHQFQMSH
Trigger: GTGAGACATCTGGAATTGGTGCCCAGCCTCTCTGCACTCTGCCCCTACAAAAGTCACTCGTTGGCAGTCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp TCTGAAAACACTGATGGAACCAACACTCGGGTCTGCTaGTCAGAGCTGCACCGCTCAAGTGGGAGAAGGCAT +
Preference number: 3 (lower is better)
Translates to: SENTDGTNTRVC*SELHRSSGRRH
Trigger: ATGCCTTCTCCCACTTGAGCGGTGCAGCTCTGAGCAGCAGACCCGAGTGTTGGTTCCATCAGTGTTTTCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CCA 72 bp CTTCAGGAAGGGGCTCAGTCAGACTCTAAGGCTACCTaGAAGGCTAAGGCAACTCCAAGTAACAGAGGCCAG +
Preference number: 3 (lower is better)
Translates to: LQEGAQSDSKAT*KAKATPSNRGQ
Trigger: CTGGCCTCTGTTACTTGGAGTTGCCTTAGCCTTCCAGGTAGCCTTAGAGTCTGACTGAGCCCCTTCCTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CCA 72 bp CAAGCCTGCAGCACAGAGGTTGCTAGGGGAGGAACATaGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTG +
Preference number: 3 (lower is better)
Translates to: QACSTEVARGGT*PSSPASIFEQL
Trigger: CAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCTAGCAACCTCTGTGCTGCAGGCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 72 bp AGTCACTGCAACAGCAGCAAGCTCCTACTAGACGCCTaGGTGGGGTCTGGGTTAAGAGGCCAGAATCAGAAA +
Preference number: 3 (lower is better)
Translates to: SHCNSSKLLLDA*VGSGLRGQNQK
Trigger: TTTCTGATTCTGGCCTCTTAACCCAGACCCCACTCAGGCGTCTAGTAGGAGCTTGCTGCTGTTGCAGTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 72 bp TTCTCAACAGTCATCACTGAGGCCCAATTCAAATGCTaGTACACACAGCCACAGCCGGCCTGGAGCTTGCGA +
Preference number: 3 (lower is better)
Translates to: FSTVITEAQFKC*YTQPQPAWSLR
Trigger: TCGCAAGCTCCAGGCCGGCTGTGGCTGTGTGTATCAGCATTTGAATTGGGCCTCAGTGATGACTGTTGAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR GCA 72 bp AGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTaGAGGAAACTGAACCTACTTTACATGACAGTGGCT +
Preference number: 3 (lower is better)
Translates to: SEVLGACVALRP*RKLNLLYMTVA
Trigger: AGCCACTGTCATGTAAAGTAGGTTCAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CCA 72 bp ACCAAAGTAAAAGCGCACAGGCAGCCTCAAGGAAGCTaGAGGAAAGACACGTGTCCCCTCTACTCTGTTTGC +
Preference number: 3 (lower is better)
Translates to: TKVKAHRQPQGS*RKDTCPLYSVC
Trigger: GCAAACAGAGTAGAGGGGACACGTGTCTTTCCTCCAGCTTCCTTGAGGCTGCCTGTGCGCTTTTACTTTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CAA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGCCTGTGTTGTGTATGTaGTTCACCAGAGCCCACACC +
Preference number: 3 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKPVLCM*FTRAHT
Trigger: GGTGTGGGCTCTGGTGAACAACATACACAACACAGG...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp CTTTGGAAACTGTCCCTGATTTTTATGCAAGTAGTATaGTCTCACAGCACTCAGCACCGCCTGTGCACGCCG +
Preference number: 3 (lower is better)
Translates to: LWKLSLIFMQVV*SHSTQHRLCTP
Trigger: CGGCGTGCACAGGCGGTGCTGAGTGCTGTGAGAGCATACTACTTGCATAAAAATCAGGGACAGTTTCCAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp AGCTGGAGGAAAGACACGTGTCCCCTCTACTCTGTTTaGGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGT +
Preference number: 3 (lower is better)
Translates to: SWRKDTCPLYSV*AISFAAFFQVC
Trigger: ACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGGGGACACGTGTCTTTCCTCCAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp GAGCCAGGAATGGTTCAAGCTTCTTTACCTCTTCAGTaGCCCAGTCACTGCAACAGCAGCAAGCTCCTACTA +
Preference number: 3 (lower is better)
Translates to: EPGMVQASLPLQ*PSHCNSSKLLL
Trigger: TAGTAGGAGCTTGCTGCTGTTGCAGTGACTGGGGCACTGAAGAGGTAAAGAAGCTTGAACCATTCCTGGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp CTTACCTTCCCGTTCTTGATCTCTTCCCGAGCCAGCTaGACCACCCTTTTCACTTTGGATGCTATACACAGG +
Preference number: 3 (lower is better)
Translates to: LTFPFLISSRAS*TTLFTLDAIHR
Trigger: CCTGTGTATAGCATCCAAAGTGAAAAGGGTGGTGCAGCTGGCTCGGGAAGAGATCAAGAACGGGAAGGTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199004.5
ENSMUST00000200674.2
3UTR GCA 72 bp TTGCTGGGCCGCATAGGTAACTGCCTCAAGCTGCAATaGAGACAGCCAGCCATTATCAATGGTCTCTTCAGA +
Preference number: 3 (lower is better)
Translates to: LLGRIGNCLKLQ*RQPAIINGLFR
Trigger: TCTGAAGAGACCATTGATAATGGCTGGCTGTCTGCATTGCAGCTTGAGGCAGTTACCTATGCGGCCCAGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR GCA 72 bp GGAACACACGGGATAAATCGAATTCTACCTCCCCAGTaGTGGGAGAAAAGGCATGCAGTACCACTGTCTGGT +
Preference number: 3 (lower is better)
Translates to: GTHGINRILPPQ*WEKRHAVPLSG
Trigger: ACCAGACAGTGGTACTGCATGCCTTTTCTCCCAGCACTGGGGAGGTAGAATTCGATTTATCCCGTGTGTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR GCA 72 bp AATGCTGATACACACAGCCACAGCCGGCCTGGAGCTTaGGATCCTCTAGTGTCTATCTCTCATGTGCTAGAA +
Preference number: 3 (lower is better)
Translates to: NADTHSHSRPGA*DPLVSISHVLE
Trigger: TTCTAGCACATGAGAGATAGACACTAGAGGATCGCAAGCTCCAGGCCGGCTGTGGCTGTGTGTATCAGCATT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR CCA 72 bp TCTGTCTACTCAGCTGCAGCCATGACATGGAATGCTTaGTTCACTTCAGCACTAGAGGGCCAAAGTGCCTGT +
Preference number: 3 (lower is better)
Translates to: SVYSAAAMTWNA*FTSALEGQSAC
Trigger: ACAGGCACTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCTGAGTAGACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CAA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGTCCCCTCTACTCTGTTaGCGCCATCAGCTTTGCTGC +
Preference number: 3 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKSPLLC*RHQLCC
Trigger: GCAGCAAAGCTGATGGCGCAAACAGAGTAGAGGGGA...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 72 bp CTCAGCATCTCTGCTTATAGCTTATCCAGCCAGAAATaGGCCCCCAAAACTGAACCTGCCTTGTGTGCTCGT +
Preference number: 3 (lower is better)
Translates to: LSISAYSLSSQK*APKTEPALCAR
Trigger: ACGAGCACACAAGGCAGGTTCAGTTTTGGGGGCTCATTTCTGGCTGGATAAGCTATAAGCAGAGATGCTGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp GAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGTaGCTGTGTTGTGTATGTTGTTCACCAGAGCCCACA +
Preference number: 3 (lower is better)
Translates to: ECLVHFSTRGPK*LCCVCCSPEPT
Trigger: TGTGGGCTCTGGTGAACAACATACACAACACAGGCACTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp GAAGAGAAGATGGGCACGGAGAAGACTGCACCTGCTTaGACCTCCCTGTTTCTTTCCCTTATAGGACTCATT +
Preference number: 3 (lower is better)
Translates to: EEKMGTEKTAPA*TSLFLSLIGLI
Trigger: AATGAGTCCTATAAGGGAAAGAAACAGGGAGGTGCAAGCAGGTGCAGTCTTCTCCGTGCCCATCTTCTCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp CATAGAAGAGAAGATGGGCACGGAGAAGACTGCACCTaGTTGCACCTCCCTGTTTCTTTCCCTTATAGGACT +
Preference number: 3 (lower is better)
Translates to: HRREDGHGEDCT*LHLPVSFPYRT
Trigger: AGTCCTATAAGGGAAAGAAACAGGGAGGTGCAAGCAGGTGCAGTCTTCTCCGTGCCCATCTTCTCTTCTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp ATGTGGTGTTTCACTCTCTGTAGCATAGGCTTGCCCTaGCTCTGCCTCCCAAACTTTGGGATGAAAAGGTGT +
Preference number: 3 (lower is better)
Translates to: MWCFTLCSIGLP*LCLPNFGMKRC
Trigger: ACACCTTTTCATCCCAAAGTTTGGGAGGCAGAGGCAGGGCAAGCCTATGCTACAGAGAGTGAAACACCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR CCA 72 bp TATTGCAGAGACACGGTGCACCTCTCCCACCCCTCGTaGTTGATGATAAAGGTGGTTATGAGAGGAAGTAAG +
Preference number: 3 (lower is better)
Translates to: YCRDTVHLSHPS*LMIKVVMRGSK
Trigger: CTTACTTCCTCTCATAACCACCTTTATCATCAACCACGAGGGGTGGGAGAGGTGCACCGTGTCTCTGCAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CAA 90 bp AAAGCTACAAATGAACCTGAATGCATGGCACGCAACCCTTCACTTCATGCTGTATCCCCTCTACTCTGTTaGCGCCATCAGCTTTGCTGC +
Preference number: 3 (lower is better)
Translates to: KATNEPECMARNPSLHAVSPLLC*RHQLCC
Trigger: GCAGCAAAGCTGATGGCGCAAACAGAGTAGAGGGGA...TACAGCATGAAGTGAAGGGTTGCGTGCCATGCATTCAGGTTCATTTGTAGCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CAA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGGAAACCATTCACCATTaGTTCTTTGAGGCACTAAGA +
Preference number: 3 (lower is better)
Translates to: ELSEVLGACVALRPCRKLETIHH*FFEALR
Trigger: TCTTAGTGCCTCAAAGAACAAATGGTGAATGGTTTC...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CAA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGCCTGTGTTGTGTATGTaGTTCACCAGAGCCCACACC +
Preference number: 3 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKPVLCM*FTRAHT
Trigger: GGTGTGGGCTCTGGTGAACAACATACACAACACAGG...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp AATTTCTGTCTACTCAGCTGCAGCCATGACATGGAATaGTTGGTTCACTTCAGCACTAGAGGGCCAAAGTGC +
Preference number: 3 (lower is better)
Translates to: NFCLLSCSHDME*LVHFSTRGPKC
Trigger: GCACTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCTGAGTAGACAGAAATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp GTCAGAGATATCCAACTCCTTATACACACTGTAACGTaGAGCCAGGCTATGAGCTACTGTCTACCTGCAAGG +
Preference number: 3 (lower is better)
Translates to: VRDIQLLIHTVT*SQAMSYCLPAR
Trigger: CCTTGCAGGTAGACAGTAGCTCATAGCCTGGCTGCACGTTACAGTGTGTATAAGGAGTTGGATATCTCTGAC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp AACAGCGTGCACTCTTCATTCAGATGGACAGTCCTATaGAGCGCAGCAGTACAAAAGGGAACTGAAGACAGA +
Preference number: 3 (lower is better)
Translates to: NSVHSSFRWTVL*SAAVQKGTEDR
Trigger: TCTGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATGAAGAGTGCACGCTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CCA 72 bp TGCATAAACACATATCCACACACAGAACGAGGGGGCTaGCACCTTAGGACACAGAATCGTTCTCATTCCTCA +
Preference number: 3 (lower is better)
Translates to: CINTYPHTERGG*HLRTQNRSHSS
Trigger: TGAGGAATGAGAACGATTCTGTGTCCTAAGGTGCCAGCCCCCTCGTTCTGTGTGTGGATATGTGTTTATGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CCA 72 bp AGGTCACCTATATCTCAGGGACCAGAGGAAGGAAGTTaGTGTGAGGAGGAAATTTCTGAGGGAACAATCGGT +
Preference number: 3 (lower is better)
Translates to: RSPISQGPEEGS*CEEEISEGTIG
Trigger: ACCGATTGTTCCCTCAGAAATTTCCTCCTCACACCAACTTCCTTCCTCTGGTCCCTGAGATATAGGTGACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CCA 72 bp ACACACGGGATAAATCGAATTCTACCTCCCCAGTGCTaGGAGAAAAGGCATGCAGTACCACTGTCTGGTTTA +
Preference number: 3 (lower is better)
Translates to: THGINRILPPQC*EKRHAVPLSGL
Trigger: TAAACCAGACAGTGGTACTGCATGCCTTTTCTCCCAGCACTGGGGAGGTAGAATTCGATTTATCCCGTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR-3UTR CAA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAGCCAAAGTGCCTGTGTaGTGTATGTTGTTCACCAGA +
Preference number: 3 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTAKVPV*CMLFTR
Trigger: TCTGGTGAACAACATACACAACACAGGCACTTTGGC...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CAA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGACCTTTAATTCTGTTTaGAAAGGGTTGTCAGATGCC +
Preference number: 3 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKTFNSV*KGLSDA
Trigger: GGCATCTGACAACCCTTTCAAAACAGAATTAAAGGT...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CAA 90 bp GAAGCTCTAAAACAGCCAAGCCTGTCTTGGTTGGCTTTGAAGAACCAACAGGACTCAGAGATGGAGGTTTaGTACCAAACATCAGGAGGA +
Preference number: 3 (lower is better)
Translates to: EALKQPSLSWLALKNQQDSEMEV*YQTSGG
Trigger: TCCTCCTGATGTTTGGTACAAAACCTCCATCTCTGA...GTCCTGTTGGTTCTTCAAAGCCAACCAAGACAGGCTTGGCTGTTTTAGAGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR TCA 72 bp TTCTATTCTCAGGGGCCACAAAGGGGGACTGCTTGCTaGTCACTGCCTGAGATACAAGGAATGAGGATAAAA +
Preference number: 3 (lower is better)
Translates to: FYSQGPQRGTAC*SLPEIQGMRIK
Trigger: TTTTATCCTCATTCCTTGTATCTCAGGCAGTGATCAGCAAGCAGTCCCCCTTTGTGGCCCCTGAGAATAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 72 bp CAAAGACTATCTCAGCAAAGCCAAAACAAAAGGCTATaGATCCCAGGCAGGGCAGCTCACACCTTTAAGCTC +
Preference number: 3 (lower is better)
Translates to: QRLSQQSQNKRL*IPGRAAHTFKL
Trigger: GAGCTTAAAGGTGTGAGCTGCCCTGCCTGGGATTCATAGCCTTTTGTTTTGGCTTTGCTGAGATAGTCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR GCA 72 bp CAGATCTCTAGGGTTTCAGAACAGCCAGGGATATTATaGAAAGTCCTTGTCTGCCTCCAATCCCCAGAAAGA +
Preference number: 3 (lower is better)
Translates to: QISRVSEQPGIL*KVLVCLQSPER
Trigger: TCTTTCTGGGGATTGGAGGCAGACAAGGACTTTGCATAATATCCCTGGCTGTTCTGAAACCCTAGAGATCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR CCA 72 bp CAAAGAATTTCTGTCTACTCAGCTGCAGCCATGACATaGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAA +
Preference number: 3 (lower is better)
Translates to: QRISVYSAAAMT*NAWFTSALEGQ
Trigger: TTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCTGAGTAGACAGAAATTCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CAA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGTCTGTTTTGAAAGGGTaGTCAGATGCCTGGTATCTG +
Preference number: 3 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKSVLKG*SDAWYL
Trigger: CAGATACCAGGCATCTGACAACCCTTTCAAAACAGA...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 72 bp TTCCTCAGGCTTTTACTTTACCATGCCCAAGGAAGCTaGACAGTCTGCTACTTCAAACACAGAAGCTCAGAG +
Preference number: 3 (lower is better)
Translates to: FLRLLLYHAQGS*TVCYFKHRSSE
Trigger: CTCTGAGCTTCTGTGTTTGAAGTAGCAGACTGTTCAGCTTCCTTGGGCATGGTAAAGTAAAAGCCTGAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 72 bp GTAGCTTCCACAGTAGGACTCTTGTCATCACTTGGATaGCAACTGTCTCCTGTCAGGTACTATAAGCTCATC +
Preference number: 3 (lower is better)
Translates to: VASTVGLLSSLG*QLSPVRYYKLI
Trigger: GATGAGCTTATAGTACCTGACAGGAGACAGTTGTCATCCAAGTGATGACAAGAGTCCTACTGTGGAAGCTAC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp CATGCATCGTCAACAAAAGCTACAAATGAACCTGAATaGATGGCACGCAACCCTTCACTTCATGCTGTAGGA +
Preference number: 3 (lower is better)
Translates to: HASSTKATNEPE*MARNPSLHAVG
Trigger: TCCTACAGCATGAAGTGAAGGGTTGCGTGCCATGCATTCAGGTTCATTTGTAGCTTTTGTTGACGATGCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp AGGATCGAGCATTTCTACTTGTGGGCAAATGAACCCTaGTCAGTGAAGCTGACACACTTGTATTGCATGAGA +
Preference number: 3 (lower is better)
Translates to: RIEHFYLWANEP*SVKLTHLYCMR
Trigger: TCTCATGCAATACAAGTGTGTCAGCTTCACTGAGCAGGGTTCATTTGCCCACAAGTAGAAATGCTCGATCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CCA 72 bp CATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTaGAACCTAGGAGTGATTTTCAGCACAAACTACTGT +
Preference number: 3 (lower is better)
Translates to: HGLPLQQVYLSS*NLGVIFSTNYC
Trigger: ACAGTAGTTTGTGCTGAAAATCACTCCTAGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CAA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAACCTCACCCAGCTCTTaGAGAAGATTAAAAAGCTAC +
Preference number: 3 (lower is better)
Translates to: PLHLLSNASHSGPSANMETSPSS*RRLKSY
Trigger: GTAGCTTTTTAATCTTCTCAAAGAGCTGGGTGAGGT...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CAA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAGAAACCATTCACCATTaGTTCTTTGAGGCACTAAGA +
Preference number: 3 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTETIHH*FFEALR
Trigger: TCTTAGTGCCTCAAAGAACAAATGGTGAATGGTTTC...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 72 bp CCTACTACTTGTGATACTAAGGCAGGAAGACTGCTATaGGTTGATCCTACACAACGCACCAAATACCAAACC +
Preference number: 3 (lower is better)
Translates to: PTTCDTKAGRLL*VDPTQRTKYQT
Trigger: GGTTTGGTATTTGGTGCGTTGTGTAGGATCAACTCATAGCAGTCTTCCTGCCTTAGTATCACAAGTAGTAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR GCA 72 bp AGGGATTTTCATGCAAAGAATTTCTGTCTACTCAGCTaGAGCCATGACATGGAATGCTTGGTTCACTTCAGC +
Preference number: 3 (lower is better)
Translates to: RDFHAKNFCLLS*SHDMECLVHFS
Trigger: GCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCTGAGTAGACAGAAATTCTTTGCATGAAAATCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp TCCTCAATTTTGAAGGTCACTCCAGTAAAGCTCAGCTaGCGTGCAATGTACATTCCTCTAAGCTTCATATCC +
Preference number: 3 (lower is better)
Translates to: SSILKVTPVKLS*RAMYIPLSFIS
Trigger: GGATATGAAGCTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTTACTGGAGTGACCTTCAAAATTGAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199004.5
ENSMUST00000200674.2
3UTR-3UTR CAA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTACTTCTGTGGGAATCTaGATTACACATGCTTTCAAA +
Preference number: 3 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFTSVGI*ITHAFK
Trigger: TTTGAAAGCATGTGTAATCAAGATTCCCACAGAAGT...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CAA 90 bp GTCTCTTCAGAGATGGAGGTTTTGTACCAAACATCAGGAGGAGTGACACTGGACCATTTTCACATAGCTTaGAGAAAGAAGAACTTCCTC +
Preference number: 3 (lower is better)
Translates to: VSSEMEVLYQTSGGVTLDHFHIA*RKKNFL
Trigger: GAGGAAGTTCTTCTTTCTCAAAGCTATGTGAAAATG...GTCCAGTGTCACTCCTCCTGATGTTTGGTACAAAACCTCCATCTCTGAAGAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR TCA 72 bp TTTTACAGCAAACTAAATCCTAGAAACTTGAGAGAATaGGAGCCCAAGCGCTCCATCAAGTCTCTGCCACTA +
Preference number: 3 (lower is better)
Translates to: FYSKLNPRNLRE*EPKRSIKSLPL
Trigger: TAGTGGCAGAGACTTGATGGAGCGCTTGGGCTCTCATTCTCTCAAGTTTCTAGGATTTAGTTTGCTGTAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 72 bp CTGCAGGAAACTGAACCTACTTTACATGACAGTGGCTaGAAAAGACATGACTGCCAACGAGTGACTTTTGTA +
Preference number: 3 (lower is better)
Translates to: LQETEPTLHDSG*KRHDCQRVTFV
Trigger: TACAAAAGTCACTCGTTGGCAGTCATGTCTTTTTCAGCCACTGTCATGTAAAGTAGGTTCAGTTTCCTGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 72 bp AAACAGATTACGGACGTTTGTTGTAAAGTAAATCTCTaGCTGTCACCTGTGGGGTCAGAGATATCCAACTCC +
Preference number: 3 (lower is better)
Translates to: KQITDVCCKVNL*LSPVGSEISNS
Trigger: GGAGTTGGATATCTCTGACCCCACAGGTGACAGTCAGAGATTTACTTTACAACAAACGTCCGTAATCTGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp AATTTTGAAGGTCACTCCAGTAAAGCTCAGCTGCCGTaGAATGTACATTCCTCTAAGCTTCATATCCATAGC +
Preference number: 3 (lower is better)
Translates to: NFEGHSSKAQLP*NVHSSKLHIHS
Trigger: GCTATGGATATGAAGCTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTTACTGGAGTGACCTTCAAAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199004.5
ENSMUST00000200674.2
3UTR CCA 72 bp ATGCCCCAACTAACTGAACATTCAATGTGTGGATCCTaGCTTAATAGCAGCTTTTCTGAAGCTCCATTCCTA +
Preference number: 3 (lower is better)
Translates to: MPQLTEHSMCGS*LNSSFSEAPFL
Trigger: TAGGAATGGAGCTTCAGAAAAGCTGCTATTAAGCCAGGATCCACACATTGAATGTTCAGTTAGTTGGGGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CAA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGACTTCTGTGGGAATCTaGATTACACATGCTTTCAAA +
Preference number: 3 (lower is better)
Translates to: LFTKKTREILQVLLWKHQTSVGI*ITHAFK
Trigger: TTTGAAAGCATGTGTAATCAAGATTCCCACAGAAGT...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CAA 90 bp AGTAAAGCTCAGCTGCCGTGCAATGTACATTCCTCTAAGCTTCATATCCATAGCTCTGCGTTCCACAGCTaGGATAAAATCACTAAATTC +
Preference number: 3 (lower is better)
Translates to: SKAQLPCNVHSSKLHIHSSAFHS*DKITKF
Trigger: GAATTTAGTGATTTTATCCAAGCTGTGGAACGCAGA...GCTATGGATATGAAGCTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199004.5
ENSMUST00000200674.2
3UTR TCA 72 bp TTAGGACACAGAATCGTTCTCATTCCTCATCCTCTGTaGCTTGGTTTCCTGAAGAAAGCAAGTTCAGTTACA +
Preference number: 3 (lower is better)
Translates to: LGHRIVLIPHPL*LGFLKKASSVT
Trigger: TGTAACTGAACTTGCTTTCTTCAGGAAACCAAGTCACAGAGGATGAGGAATGAGAACGATTCTGTGTCCTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR TCA 72 bp TGTTATACCATGCCTAAATTTCTCAACAGTCATCACTaGGGCCCAATTCAAATGCTGATACACACAGCCACA +
Preference number: 3 (lower is better)
Translates to: CYTMPKFLNSHH*GPIQMLIHTAT
Trigger: TGTGGCTGTGTGTATCAGCATTTGAATTGGGCCTCAGTGATGACTGTTGAGAAATTTAGGCATGGTATAACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR GCA 72 bp TGCAAAAAGCAGCCTCCATTCCATCTCCTCTTGCTCTaGATGAAATGGGTGTACATCATAATTAACTGTTTG +
Preference number: 3 (lower is better)
Translates to: CKKQPPFHLLLL*MKWVYIIINCL
Trigger: CAAACAGTTAATTATGATGTACACCCATTTCATGCAGAGCAAGAGGAGATGGAATGGAGGCTGCTTTTTGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp TCAGAACAGCCAGGGATATTATGCAAAGTCCTTGTCTaGCTCCAATCCCCAGAAAGAAAACACAATAAATGT +
Preference number: 3 (lower is better)
Translates to: SEQPGILCKVLV*LQSPERKHNKC
Trigger: ACATTTATTGTGTTTTCTTTCTGGGGATTGGAGGCAGACAAGGACTTTGCATAATATCCCTGGCTGTTCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR CCA 72 bp ATTTGTTCTGAAGCTCTAAAACAGCCAAGCCTGTCTTaGTTGGCTTTGAAGAACCAACAGGACATAAGTTTT +
Preference number: 3 (lower is better)
Translates to: ICSEALKQPSLS*LALKNQQDISF
Trigger: AAAACTTATGTCCTGTTGGTTCTTCAAAGCCAACCAAGACAGGCTTGGCTGTTTTAGAGCTTCAGAACAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR GCA 72 bp TGCAATTTAGTAGTAAAGAGAGCAAACTGCTTAGCCTaGCTAGCTTTCTCACCAACTTGCATTTATAGAAAT +
Preference number: 3 (lower is better)
Translates to: CNLVVKRANCLA*LAFSPTCIYRN
Trigger: ATTTCTATAAATGCAAGTTGGTGAGAAAGCTAGGCAGGCTAAGCAGTTTGCTCTCTTTACTACTAAATTGCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR GCA 72 bp CAAACAAAAGACTATAATAGTCAAACAGTAGTGGTATaGACATTTAATCCCAGCACACAGGAATCAGAGGAA +
Preference number: 3 (lower is better)
Translates to: QTKDYNSQTVVV*TFNPSTQESEE
Trigger: TTCCTCTGATTCCTGTGTGCTGGGATTAAATGTGCATACCACTACTGTTTGACTATTATAGTCTTTTGTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR CCA 72 bp ACCTTTAATTCTGTTTTGAAAGGGTTGTCAGATGCCTaGTATCTGTGGACTTTTCCTCACTCAACATTAAAA +
Preference number: 3 (lower is better)
Translates to: TFNSVLKGLSDA*YLWTFPHSTLK
Trigger: TTTTAATGTTGAGTGAGGAAAAGTCCACAGATACCAGGCATCTGACAACCCTTTCAAAACAGAATTAAAGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR-3UTR CAA 90 bp GAAATAACCCAACACATTAAAGTAGTTTGGGCTTCATTTACTCTATGTGAGCTATCTGCGTTCCACAGCTaGGATAAAATCACTAAATTC +
Preference number: 3 (lower is better)
Translates to: EITQHIKVVWASFTLCELSAFHS*DKITKF
Trigger: GAATTTAGTGATTTTATCCAAGCTGTGGAACGCAGA...TAGCTCACATAGAGTAAATGAAGCCCAAACTACTTTAATGTGTTGGGTTATTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR TCA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACGCAGTTGCAACTGGCTaGGCAATATTGGCGGGTGGC +
Preference number: 4 (lower is better)
Translates to: QRLGKGGPILFSGATKGDAVATG*AILAGG
Trigger: GCCACCCGCCAATATTGCTCAGCCAGTTGCAACTGC...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 72 bp ACTGGAACAAGAGAGGGCAAGCCTGCAGCACAGAGGTaGCTAGGGGAGGAACATGGCCTTCCTCTCCAGCAA +
Preference number: 4 (lower is better)
Translates to: TGTREGKPAAQR*LGEEHGLPLQQ
Trigger: TTGCTGGAGAGGAAGGCCATGTTCCTCCCCTAGCAACCTCTGTGCTGCAGGCTTGCCCTCTCTTGTTCCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 72 bp CCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTATaGCAGAGACACGGTGCACCTCTCCCACCCCTCGTG +
Preference number: 4 (lower is better)
Translates to: PLHKEVEPGTSL*QRHGAPLPPLV
Trigger: CACGAGGGGTGGGAGAGGTGCACCGTGTCTCTGCAATAAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACTGCACTGCGAGCTGCTaGGACTGGTCTGAAGTTGAC +
Preference number: 4 (lower is better)
Translates to: QRLGKGGPILFSGATKGDCTASC*DWSEVD
Trigger: GTCAACTTCAGACCAGTCTCAGCAGCTCGCAGTGCA...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGGTAGGCCATGTTGCGTaGTTCAGAAGCACCAGTGGC +
Preference number: 4 (lower is better)
Translates to: ELSEVLGACVALRPCRKLVGHVA*FRSTSG
Trigger: GCCACTGGTGCTTCTGAACCACGCAACATGGCCTAC...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CCTTTACCCACACCAGCACCATCGCCTATTAAGAAGCCAGCACGGTCTCCATTACTGAACCTGGTCTTTTaGAGGAGCAGCGGGCATGGC +
Preference number: 4 (lower is better)
Translates to: PLPTPAPSPIKKPARSPLLNLVF*RSSGHG
Trigger: GCCATGCCCGCTGCTCCTTCAAAAGACCAGGTTCAG...TAATGGAGACCGTGCTGGCTTCTTAATAGGCGATGGTGCTGGTGTGGGTAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR GCA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGGTGGATGGAGGCTGCTaGCTCACATTTAACAGTGCG +
Preference number: 4 (lower is better)
Translates to: ELSEVLGACVALRPCRKLVDGGC*LTFNSA
Trigger: CGCACTGTTAAATGTGAGGCAGCAGCCTCCATCCAC...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGCTCTGCGTAGGTCTCTaGATGACCCATTTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: ELSEVLGACVALRPCRKLLCVGL*MTHFFL
Trigger: GAGGAAGAAATGGGTCATGCAGAGACCTACGCAGAG...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGAGGCGAGATGACTGGTaGAGAGGAGAAACTAGGCCG +
Preference number: 4 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKRRDDW*RGETRP
Trigger: CGGCCTAGTTTCTCCTCTGCACCAGTCATCTCGCCT...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACTGCCCAAATCTTGGTTaGTTCCTCCCAGGACATTCC +
Preference number: 4 (lower is better)
Translates to: QRLGKGGPILFSGATKGDCPNLG*FLPGHS
Trigger: GGAATGTCCTGGGAGGAAGCAACCAAGATTTGGGCA...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGGTAGGCCATGTTGCGTaGTTCAGAAGCACCAGTGGC +
Preference number: 4 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKVGHVA*FRSTSG
Trigger: GCCACTGGTGCTTCTGAACCACGCAACATGGCCTAC...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CCTCTACTCTGTTTGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTACTGAACCTGGTCTTTTaGAGGAGCAGCGGGCATGGC +
Preference number: 4 (lower is better)
Translates to: PLLCLRHQLCCLFPGLSLLNLVF*RSSGHG
Trigger: GCCATGCCCGCTGCTCCTTCAAAAGACCAGGTTCAG...TAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAGCAGTTGCAACTGGCTaGGCAATATTGGCGGGTGGC +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTAVATG*AILAGG
Trigger: GCCACCCGCCAATATTGCTCAGCCAGTTGCAACTGC...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACGTAGTCTGGAGGTGGTaGTACCATAGGAGAATCCAA +
Preference number: 4 (lower is better)
Translates to: QRLGKGGPILFSGATKGDVVWRW*YHRRIQ
Trigger: TTGGATTCTCCTATGGTATCACCACCTCCAGACTAC...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp ATCCACACACAGAACGAGGGGGCTGGCACCTTAGGACACAGAATCGTTCTCATTTCACATTTGTGCCGCTaGCAGAGGCCAGAACACCTT +
Preference number: 4 (lower is better)
Translates to: IHTQNEGAGTLGHRIVLISHLCR*QRPEHL
Trigger: AAGGTGTTCTGGCCTCTGTCAGCGGCACAAATGTGA...AATGAGAACGATTCTGTGTCCTAAGGTGCCAGCCCCCTCGTTCTGTGTGTGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGTCACATTTGTGCCGCTaGCAGAGGCCAGAACACCTT +
Preference number: 4 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKSHLCR*QRPEHL
Trigger: AAGGTGTTCTGGCCTCTGTCAGCGGCACAAATGTGA...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTGGTTGCTCAAGTTGGTaGTGCTCTGTGGGTGATGCT +
Preference number: 4 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPGCSSW*CSVGDA
Trigger: AGCATCACCCACAGAGCATCACCAACTTGAGCAACC...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGGTGGATGGAGGCTGCTaGCTCACATTTAACAGTGCG +
Preference number: 4 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKVDGGC*LTFNSA
Trigger: CGCACTGTTAAATGTGAGGCAGCAGCCTCCATCCAC...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp ATCCACACACAGAACGAGGGGGCTGGCACCTTAGGACACAGAATCGTTCTCATTGTAACTGCCTCAAGCTaGAATGCAGACAGCCAGCCA +
Preference number: 4 (lower is better)
Translates to: IHTQNEGAGTLGHRIVLIVTASS*NADSQP
Trigger: TGGCTGGCTGTCTGCATTGCAGCTTGAGGCAGTTAC...AATGAGAACGATTCTGTGTCCTAAGGTGCCAGCCCCCTCGTTCTGTGTGTGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp ATCCACACACAGAACGAGGGGGCTGGCACCTTAGGACACAGAATCGTTCTCATTTCTTCCCGAGCCAGCTaGACCACCCTTTTCACTTTG +
Preference number: 4 (lower is better)
Translates to: IHTQNEGAGTLGHRIVLISSRAS*TTLFTL
Trigger: CAAAGTGAAAAGGGTGGTGCAGCTGGCTCGGGAAGA...AATGAGAACGATTCTGTGTCCTAAGGTGCCAGCCCCCTCGTTCTGTGTGTGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGGTCACCATGTGTAAGTaGCCCCAAACTCTCAAGTCT +
Preference number: 4 (lower is better)
Translates to: ELSEVLGACVALRPCRKLVTMCK*PQTLKS
Trigger: AGACTTGAGAGTTTGGGGGCACTTACACATGGTGAC...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp TCCCTCACCCCATATTCCAAGACGGTTCATGTAGGCCATGTTGCGTGGTTCAGAAGCTGCAGTTGCAACTaGCTGAGCAATATTGGCGGG +
Preference number: 4 (lower is better)
Translates to: SLTPYSKTVHVGHVAWFRSCSCN*LSNIGG
Trigger: CCCGCCAATATTGCTCAGCCAGTTGCAACTGCAGCT...TCTGAACCACGCAACATGGCCTACATGAACCGTCTTGGAATATGGGGTGAGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR CCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGGCTCTGCCCAAATCTTaGTTGCTTCCTCCCAGGACA +
Preference number: 4 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKALPKS*LLPPRT
Trigger: TGTCCTGGGAGGAAGCAACCAAGATTTGGGCAGAGC...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGGTGTTTTTCAATCAGTaGCTGCAATACCCCTTTGGC +
Preference number: 4 (lower is better)
Translates to: ELSEVLGACVALRPCRKLVFFNQ*LQYPFG
Trigger: GCCAAAGGGGTATTGCAGTCACTGATTGAAAAACAC...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CCTCTACTCTGTTTGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTACAGAGCTGCTTCCTGTaGGGCCACCAACTTTTCGTG +
Preference number: 4 (lower is better)
Translates to: PLLCLRHQLCCLFPGLSLQSCFL*GHQLFV
Trigger: CACGAAAAGTTGGTGGCCTCACAGGAAGCAGCTCTG...TAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACATGCACTGCGAGCTGCTaGGACTGGTCTGAAGTTGAC +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTCTASC*DWSEVD
Trigger: GTCAACTTCAGACCAGTCTCAGCAGCTCGCAGTGCA...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGTGCCTCAAGCTGCAATaGAGACAGCCAGCCATTATC +
Preference number: 4 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKCLKLQ*RQPAII
Trigger: GATAATGGCTGGCTGTCTGCATTGCAGCTTGAGGCA...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAAGGCGAGATGACTGGTaGAGAGGAGAAACTAGGCCG +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTRRDDW*RGETRP
Trigger: CGGCCTAGTTTCTCCTCTGCACCAGTCATCTCGCCT...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp ATCCACACACAGAACGAGGGGGCTGGCACCTTAGGACACAGAATCGTTCTCATTAAACCTACAATCCGCTaGCCATCTTCGGTCCTTAGC +
Preference number: 4 (lower is better)
Translates to: IHTQNEGAGTLGHRIVLIKPTIR*PSSVLS
Trigger: GCTAAGGACCGAAGATGGGCAGCGGATTGTAGGTTT...AATGAGAACGATTCTGTGTCCTAAGGTGCCAGCCCCCTCGTTCTGTGTGTGGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTCTGTTTTTGTTGCACTaGGAGCTGCTGAGACTGGTC +
Preference number: 4 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPLFLLH*ELLRLV
Trigger: GACCAGTCTCAGCAGCTCGCAGTGCAACAAAAACAG...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp TTCTCTGAATGGAGTTCCCTCACCCCATATTCCAAGACGGTTCATGTAGGCCATAAGGAGCAGCGGGCATaGCATTTCGTACTGCTGGTG +
Preference number: 4 (lower is better)
Translates to: FSEWSSLTPYSKTVHVGHKEQRA*HFVLLV
Trigger: CACCAGCAGTACGAAATGCCATGCCCGCTGCTCCTT...ATGGCCTACATGAACCGTCTTGGAATATGGGGTGAGGGAACTCCATTCAGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR CCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGAAGGAGCAGCGGGCATaGCATTTCGTACTGCTGGTG +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGKEQRA*HFVLLV
Trigger: CACCAGCAGTACGAAATGCCATGCCCGCTGCTCCTT...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGAGCAATATTGGCGGGTaGCTTCAGTTTCATGAGTTC +
Preference number: 4 (lower is better)
Translates to: ELSEVLGACVALRPCRKLSNIGG*LQFHEF
Trigger: GAACTCATGAAACTGAAGCCACCCGCCAATATTGCT...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTGTAAAAGCCATCATCTaGTCCAGTCAGCTCTGCCCA +
Preference number: 4 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPVKAII*SSQLCP
Trigger: TGGGCAGAGCTGACTGGACCAGATGATGGCTTTTAC...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 72 bp AAGCTGGAGGAAAGACACGTGTCCCCTCTACTCTGTTaGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTG +
Preference number: 4 (lower is better)
Translates to: KLEERHVSPLLC*RHQLCCLFPGL
Trigger: CAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGGGGACACGTGTCTTTCCTCCAGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 72 bp TTCTGTCTACTCAGCTGCAGCCATGACATGGAATGCTaGGTTCACTTCAGCACTAGAGGGCCAAAGTGCCTG +
Preference number: 4 (lower is better)
Translates to: FCLLSCSHDMEC*VHFSTRGPKCL
Trigger: CAGGCACTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCTGAGTAGACAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGCAGAGCTGCTTCCTGTaGGGCCACCAACTTTTCGTG +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQQSCFL*GHQLFV
Trigger: CACGAAAAGTTGGTGGCCTCACAGGAAGCAGCTCTG...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAGGTTGCTCAAGTTGGTaGTGCTCTGTGGGTGATGCT +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTGCSSW*CSVGDA
Trigger: AGCATCACCCACAGAGCATCACCAACTTGAGCAACC...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGATCAGTAGCTGCAGTTaGAACTGGCTGAGCAATATT +
Preference number: 4 (lower is better)
Translates to: ELSEVLGACVALRPCRKLISSCS*NWLSNI
Trigger: AATATTGCTCAGCCAGTTGCAACTGCAGCTACTGAT...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTCCAGTAAAGCTCAGCTaGCGTGCAATGTACATTCCT +
Preference number: 4 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPPVKLS*RAMYIP
Trigger: AGGAATGTACATTGCACGGCAGCTGAGCTTTACTGG...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACATCTTCCCGAGCCAGCTaGACCACCCTTTTCACTTTG +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTSSRAS*TTLFTL
Trigger: CAAAGTGAAAAGGGTGGTGCAGCTGGCTCGGGAAGA...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACTGCAGTAAGTGTGTCTaGAAAATACTGAAACAGCGC +
Preference number: 4 (lower is better)
Translates to: QRLGKGGPILFSGATKGDCSKCV*KILKQR
Trigger: GCGCTGTTTCAGTATTTTGCAGACACACTTACTGCA...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTAAACGTTGTAGTGGATaGAGGCTGCTGCCTCACATT +
Preference number: 4 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPKRCSG*RLLPHI
Trigger: AATGTGAGGCAGCAGCCTCCATCCACTACAACGTTT...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGAAGGAGCAGCGGGCATaGCATTTCGTACTGCTGGTG +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQKEQRA*HFVLLV
Trigger: CACCAGCAGTACGAAATGCCATGCCCGCTGCTCCTT...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAAGCTGCAGTTGCAACTaGCTGAGCAATATTGGCGGG +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTSCSCN*LSNIGG
Trigger: CCCGCCAATATTGCTCAGCCAGTTGCAACTGCAGCT...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACAAGTTTCTTCCTGTCTaGAGCAGGGAAGTGTTTTTC +
Preference number: 4 (lower is better)
Translates to: QRLGKGGPILFSGATKGDKFLPV*SREVFF
Trigger: GAAAAACACTTCCCTGCTCCAGACAGGAAGAAACTT...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAGCTCTGCCCAAATCTTaGTTGCTTCCTCCCAGGACA +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTALPKS*LLPPRT
Trigger: TGTCCTGGGAGGAAGCAACCAAGATTTGGGCAGAGC...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 72 bp GGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTaGAGCAGCTGGAACCTAGGAGTGATTTTCAGCACA +
Preference number: 4 (lower is better)
Translates to: GEEHGLPLQQVY*SSWNLGVIFST
Trigger: TGTGCTGAAAATCACTCCTAGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 72 bp AGAAGAGAAGATGGGCACGGAGAAGACTGCACCTGCTaGCACCTCCCTGTTTCTTTCCCTTATAGGACTCAT +
Preference number: 4 (lower is better)
Translates to: RREDGHGEDCTC*HLPVSFPYRTH
Trigger: ATGAGTCCTATAAGGGAAAGAAACAGGGAGGTGCAAGCAGGTGCAGTCTTCTCCGTGCCCATCTTCTCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 72 bp GCATGTATGTGGTGTTTCACTCTCTGTAGCATAGGCTaGCCCTGCCTCTGCCTCCCAAACTTTGGGATGAAA +
Preference number: 4 (lower is better)
Translates to: ACMWCFTLCSIG*PCLCLPNFGMK
Trigger: TTTCATCCCAAAGTTTGGGAGGCAGAGGCAGGGCAAGCCTATGCTACAGAGAGTGAAACACCACATACATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR TCA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACAGTAAATCCTTTAGCTaGACCTGGTCTTTTGAAGGA +
Preference number: 4 (lower is better)
Translates to: QRLGKGGPILFSGATKGDSKSFS*TWSFEG
Trigger: TCCTTCAAAAGACCAGGTTCAGCTAAAGGATTTACT...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGAGTAAATCCTTTAGCTaGACCTGGTCTTTTGAAGGA +
Preference number: 4 (lower is better)
Translates to: ELSEVLGACVALRPCRKLSKSFS*TWSFEG
Trigger: TCCTTCAAAAGACCAGGTTCAGCTAAAGGATTTACT...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp ATCACTAAATTCTCTGAATGGAGTTCCCTCACCCCATATTCCAAGACGGTTCATGCAGTTGCAACTGGCTaGGCAATATTGGCGGGTGGC +
Preference number: 4 (lower is better)
Translates to: ITKFSEWSSLTPYSKTVHAVATG*AILAGG
Trigger: GCCACCCGCCAATATTGCTCAGCCAGTTGCAACTGC...ATGAACCGTCTTGGAATATGGGGTGAGGGAACTCCATTCAGAGAATTTAGTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR TCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGTTTTGGCTTCTCGAGTaGTTTCTTCACCTTTCCGCT +
Preference number: 4 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKFWLLE*FLHLSA
Trigger: AGCGGAAAGGTGAAGAAATCACTCGAGAAGCCAAAA...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CACTCCAGTAAAGCTCAGCTGCCGTGCAATGTACATTCCTCTAAGCTTCATATCGTGGATGGAGGCTGCTaGCTCACATTTAACAGTGCG +
Preference number: 4 (lower is better)
Translates to: HSSKAQLPCNVHSSKLHIVDGGC*LTFNSA
Trigger: CGCACTGTTAAATGTGAGGCAGCAGCCTCCATCCAC...GATATGAAGCTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTTACTGGAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR GCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGCTCTGCGTAGGTCTCTaGATGACCCATTTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGLCVGL*MTHFFL
Trigger: GAGGAAGAAATGGGTCATGCAGAGACCTACGCAGAG...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTTATTGGCATATACTCTaGGTAGGTCTCTGCATGACC +
Preference number: 4 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPYWHIL*VGLCMT
Trigger: GGTCATGCAGAGACCTACGCAGAGTATATGCCAATA...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp GGTCACTCCAGTAAAGCTCAGCTGCCGTGCAATGTACATTCCTCTAAGCTTCATTGCCTCAAGCTGCAATaGAGACAGCCAGCCATTATC +
Preference number: 4 (lower is better)
Translates to: GHSSKAQLPCNVHSSKLHCLKLQ*RQPAII
Trigger: GATAATGGCTGGCTGTCTGCATTGCAGCTTGAGGCA...ATGAAGCTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTTACTGGAGTGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR GCA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAGGCCGCATAGGTAACTaGCTCAAGCTGCAATGCAGA +
Preference number: 4 (lower is better)
Translates to: PLHLLSNASHSGPSANMEGRIGN*LKLQCR
Trigger: TCTGCATTGCAGCTTGAGGCAGTTACCTATGCGGCC...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGAAAGCTCAGCTGCCGTaGAATGTACATTCCTCTAAG +
Preference number: 4 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKKAQLP*NVHSSK
Trigger: CTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTT...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGTTACAAGGCTGCTGTTaGTGTTGCTGTTACTGTTGG +
Preference number: 4 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKLQGCC*CCCYCW
Trigger: CCAACAGTAACAGCAACAGCAACAGCAGCCTTGTAA...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGTGCCCAAATCTTGGTTaGTTCCTCCCAGGACATTCC +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGCPNLG*FLPGHS
Trigger: GGAATGTCCTGGGAGGAAGCAACCAAGATTTGGGCA...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CCTCTACTCTGTTTGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTATGGTCCAGTCAGCTCTaGCCAAATCTTGGTTGCTTC +
Preference number: 4 (lower is better)
Translates to: PLLCLRHQLCCLFPGLSLWSSQL*PNLGCF
Trigger: GAAGCAACCAAGATTTGGGCAGAGCTGACTGGACCA...TAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CCTCTACTCTGTTTGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTAAAACCTACAATCCGCTaGCCATCTTCGGTCCTTAGC +
Preference number: 4 (lower is better)
Translates to: PLLCLRHQLCCLFPGLSLKPTIR*PSSVLS
Trigger: GCTAAGGACCGAAGATGGGCAGCGGATTGTAGGTTT...TAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACACTGTTTTTGTTGCACTaGGAGCTGCTGAGACTGGTC +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTLFLLH*ELLRLV
Trigger: GACCAGTCTCAGCAGCTCGCAGTGCAACAAAAACAG...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGAGCTGCAGTTGCAACTaGCTGAGCAATATTGGCGGG +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQSCSCN*LSNIGG
Trigger: CCCGCCAATATTGCTCAGCCAGTTGCAACTGCAGCT...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACTATTTACCACCAGACTaGCTTTCACCAATAAGGGAA +
Preference number: 4 (lower is better)
Translates to: QRLGKGGPILFSGATKGDYLPPD*LSPIRE
Trigger: TTCCCTTATTGGTGAAAGCCAGTCTGGTGGTAAATA...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTACCTTTGCTTCTCTGTaGTGTTTAGAATCTCCACAG +
Preference number: 4 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPTFASL*CLESPQ
Trigger: CTGTGGAGATTCTAAACATCACAGAGAAGCAAAGGT...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACAAGAGTAAGAATTCCTaGGCGATCCTCTACATTAAT +
Preference number: 4 (lower is better)
Translates to: QRLGKGGPILFSGATKGDKSKNS*AILYIN
Trigger: ATTAATGTAGAGGATCGCTCAGGAATTCTTACTCTT...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp ATCCACACACAGAACGAGGGGGCTGGCACCTTAGGACACAGAATCGTTCTCATTGAGTTAGAAACTTCTTaGCATCACTCTTCCTCACCT +
Preference number: 4 (lower is better)
Translates to: IHTQNEGAGTLGHRIVLIELETS*HHSSSP
Trigger: AGGTGAGGAAGAGTGATGTCAAGAAGTTTCTAACTC...AATGAGAACGATTCTGTGTCCTAAGGTGCCAGCCCCCTCGTTCTGTGTGTGGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTATCAGTAGCTGCAGTTaGAACTGGCTGAGCAATATT +
Preference number: 4 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPISSCS*NWLSNI
Trigger: AATATTGCTCAGCCAGTTGCAACTGCAGCTACTGAT...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGTGCCTCAAGCTGCAATaGAGACAGCCAGCCATTATC +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQCLKLQ*RQPAII
Trigger: GATAATGGCTGGCTGTCTGCATTGCAGCTTGAGGCA...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AAAGCTACAAATGAACCTGAATGCATGGCACGCAACCCTTCACTTCATGCTGTAGTAACTGCCTCAAGCTaGAATGCAGACAGCCAGCCA +
Preference number: 4 (lower is better)
Translates to: KATNEPECMARNPSLHAVVTASS*NADSQP
Trigger: TGGCTGGCTGTCTGCATTGCAGCTTGAGGCAGTTAC...TACAGCATGAAGTGAAGGGTTGCGTGCCATGCATTCAGGTTCATTTGTAGCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AGTAAAGCTCAGCTGCCGTGCAATGTACATTCCTCTAAGCTTCATATCCATAGCGGCCGCATAGGTAACTaGCTCAAGCTGCAATGCAGA +
Preference number: 4 (lower is better)
Translates to: SKAQLPCNVHSSKLHIHSGRIGN*LKLQCR
Trigger: TCTGCATTGCAGCTTGAGGCAGTTACCTATGCGGCC...GCTATGGATATGAAGCTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTTACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR GCA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACTTTAGCAACAATAGATaGAAATCTCTGTTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: QRLGKGGPILFSGATKGDFSNNR*KSLFSS
Trigger: GCTGGAGAACAGAGATTTGCATCTATTGTTGCTAAA...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGCAACAGGTACCTTCATaGTGGGGGAAAAGCTCCTCA +
Preference number: 4 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKQQVPS*WGKSSS
Trigger: TGAGGAGCTTTTCCCCCACCATGAAGGTACCTGTTG...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACACAGCCAAGCCTGTCTTaGTTGGCTTTGAAGAACCAA +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTQPSLS*LALKNQ
Trigger: TTGGTTCTTCAAAGCCAACCAAGACAGGCTTGGCTG...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CCTCTACTCTGTTTGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTACAGCCAAGCCTGTCTTaGTTGGCTTTGAAGAACCAA +
Preference number: 4 (lower is better)
Translates to: PLLCLRHQLCCLFPGLSLQPSLS*LALKNQ
Trigger: TTGGTTCTTCAAAGCCAACCAAGACAGGCTTGGCTG...TAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp TCCTCTAAGCTTCATATCCATAGCAACGATTTCCATGGCACCAACACCTCTGCGCAGCCAAGCCTGTCTTaGTTGGCTTTGAAGAACCAA +
Preference number: 4 (lower is better)
Translates to: SSKLHIHSNDFHGTNTSAQPSLS*LALKNQ
Trigger: TTGGTTCTTCAAAGCCAACCAAGACAGGCTTGGCTG...CGCAGAGGTGTTGGTGCCATGGAAATCGTTGCTATGGATATGAAGCTTAGAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR CCA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGTGGCATAAACAACTCTaGCTTTTGGCAATTTGTTCT +
Preference number: 4 (lower is better)
Translates to: ELSEVLGACVALRPCRKLWHKQL*LLAICS
Trigger: AGAACAAATTGCCAAAAGCCAGAGTTGTTTATGCCA...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAAAGCACCAGTGGCACTaGCATAAACAACTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTKHQWH*HKQLWL
Trigger: AAGCCAGAGTTGTTTATGCCAGTGCCACTGGTGCTT...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGAAGCACCAGTGGCACTaGCATAAACAACTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGKHQWH*HKQLWL
Trigger: AAGCCAGAGTTGTTTATGCCAGTGCCACTGGTGCTT...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGCTGCGTTCCACAGCTTaGATAAAATCACTAAATTCT +
Preference number: 4 (lower is better)
Translates to: ELSEVLGACVALRPCRKLLRSTA*IKSLNS
Trigger: AGAATTTAGTGATTTTATCCAAGCTGTGGAACGCAG...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGCCACCCTTTTCACTTTaGATGCTATACACAGGTACT +
Preference number: 4 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKPPFSL*MLYTGT
Trigger: AGTACCTGTGTATAGCATCCAAAGTGAAAAGGGTGG...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACATGTTGCTGTTACTGTTaGCTGGTGCACTGTTGGAAG +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTCCCYC*LVHCWK
Trigger: CTTCCAACAGTGCACCAGCCAACAGTAACAGCAACA...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CCTCTACTCTGTTTGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTAGCTTCTCCTGTAGACTaGAGACCAATTACAACACAC +
Preference number: 4 (lower is better)
Translates to: PLLCLRHQLCCLFPGLSLASPVD*RPITTH
Trigger: GTGTGTTGTAATTGGTCTTCAGTCTACAGGAGAAGC...TAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGAGGACTATCTCTTGGTaGACTGTTGTTACTTGGGGC +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQRTISW*TVVTWG
Trigger: GCCCCAAGTAACAACAGTTCACCAAGAGATAGTCCT...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAAGGACTATCTCTTGGTaGACTGTTGTTACTTGGGGC +
Preference number: 4 (lower is better)
Translates to: PLHLLSNASHSGPSANMERTISW*TVVTWG
Trigger: GCCCCAAGTAACAACAGTTCACCAAGAGATAGTCCT...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGTTTTGGCTTCTCGAGTaGTTTCTTCACCTTTCCGCT +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGFWLLE*FLHLSA
Trigger: AGCGGAAAGGTGAAGAAATCACTCGAGAAGCCAAAA...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGAGCAGTCACTTGGTTTaGCCTGTGTGTTCTTCCAAA +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGSSHLV*PVCSSK
Trigger: TTTGGAAGAACACACAGGTCAAACCAAGTGACTGCT...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAGTAGTCTGGAGGTGGTaGTACCATAGGAGAATCCAA +
Preference number: 4 (lower is better)
Translates to: PLHLLSNASHSGPSANMEVVWRW*YHRRIQ
Trigger: TTGGATTCTCCTATGGTATCACCACCTCCAGACTAC...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp GAATGGAGTTCCCTCACCCCATATTCCAAGACGGTTCATGTAGGCCATGTTGCGTTGCCTATTCGTTGTTaGAGGTGGTGTTTTAGTCAT +
Preference number: 4 (lower is better)
Translates to: EWSSLTPYSKTVHVGHVALPIRC*RWCFSH
Trigger: ATGACTAAAACACCACCTGCAACAACGAATAGGCAA...CGCAACATGGCCTACATGAACCGTCTTGGAATATGGGGTGAGGGAACTCCATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR GCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACATATTGGCATATACTCTaGGTAGGTCTCTGCATGACC +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTYWHIL*VGLCMT
Trigger: GGTCATGCAGAGACCTACGCAGAGTATATGCCAATA...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGCCAGTAAAGCTCAGCTaGCGTGCAATGTACATTCCT +
Preference number: 4 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKPVKLS*RAMYIP
Trigger: AGGAATGTACATTGCACGGCAGCTGAGCTTTACTGG...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTGACTTGTTACAAGGCTaGTGTTGCTGTTGCTGTTAC +
Preference number: 4 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFDLLQG*CCCCCY
Trigger: GTAACAGCAACAGCAACAGCAGCCTTGTAACAAGTC...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGTCGACTCGTAGGATATaGTTCCGTCATCATTGCTCA +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGSTRRI*FRHHCS
Trigger: TGAGCAATGATGACGGAAGCATATCCTACGAGTCGA...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTCCATCCATGAACCTTTaGTTCTCTGTGATGTTTAGA +
Preference number: 4 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPPSMNL*FSVMFR
Trigger: TCTAAACATCACAGAGAAGCAAAGGTTCATGGATGG...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGGTCACCATGTGTAAGTaGCCCCAAACTCTCAAGTCT +
Preference number: 4 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKVTMCK*PQTLKS
Trigger: AGACTTGAGAGTTTGGGGGCACTTACACATGGTGAC...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAGCTGATGCACCTCCATaGCCAGGATTCTGTTTAAGA +
Preference number: 4 (lower is better)
Translates to: PLHLLSNASHSGPSANMEADAPP*PGFCLR
Trigger: TCTTAAACAGAATCCTGGGCATGGAGGTGCATCAGC...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGGCTGATGCACCTCCATaGCCAGGATTCTGTTTAAGA +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQADAPP*PGFCLR
Trigger: TCTTAAACAGAATCCTGGGCATGGAGGTGCATCAGC...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAGTGAGTACAGGTGTCTaGAGAGGAGTTATACTGATC +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTVSTGV*RGVILI
Trigger: GATCAGTATAACTCCTCTGCAGACACCTGTACTCAC...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGGTGAGTACAGGTGTCTaGAGAGGAGTTATACTGATC +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGVSTGV*RGVILI
Trigger: GATCAGTATAACTCCTCTGCAGACACCTGTACTCAC...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACACTTAGCCGCACTATCTaGATTTTCACATTTGTGCCG +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTLSRTI*IFTFVP
Trigger: CGGCACAAATGTGAAAATGCAGATAGTGCGGCTAAG...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGAAACGTTGTAGTGGATaGAGGCTGCTGCCTCACATT +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQKRCSG*RLLPHI
Trigger: AATGTGAGGCAGCAGCCTCCATCCACTACAACGTTT...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AAATTCTCTGAATGGAGTTCCCTCACCCCATATTCCAAGACGGTTCATGTAGGCAAACGTTGTAGTGGATaGAGGCTGCTGCCTCACATT +
Preference number: 4 (lower is better)
Translates to: KFSEWSSLTPYSKTVHVGKRCSG*RLLPHI
Trigger: AATGTGAGGCAGCAGCCTCCATCCACTACAACGTTT...GCCTACATGAACCGTCTTGGAATATGGGGTGAGGGAACTCCATTCAGAGAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR CCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGTATTTACCACCAGACTaGCTTTCACCAATAAGGGAA +
Preference number: 4 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKYLPPD*LSPIRE
Trigger: TTCCCTTATTGGTGAAAGCCAGTCTGGTGGTAAATA...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGTGTTGCTGTTACTGTTaGCTGGTGCACTGTTGGAAG +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQCCCYC*LVHCWK
Trigger: CTTCCAACAGTGCACCAGCCAACAGTAACAGCAACA...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AAAGCTACAAATGAACCTGAATGCATGGCACGCAACCCTTCACTTCATGCTGTAGTAAAAGCCATCATCTaGTCCAGTCAGCTCTGCCCA +
Preference number: 4 (lower is better)
Translates to: KATNEPECMARNPSLHAVVKAII*SSQLCP
Trigger: TGGGCAGAGCTGACTGGACCAGATGATGGCTTTTAC...TACAGCATGAAGTGAAGGGTTGCGTGCCATGCATTCAGGTTCATTTGTAGCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACAGACACACAATTTGCTaGAATGATCAAACCTACAAT +
Preference number: 4 (lower is better)
Translates to: QRLGKGGPILFSGATKGDRHTIC*NDQTYN
Trigger: ATTGTAGGTTTGATCATTCCAGCAAATTGTGTGTCT...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 72 bp AAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTaGCACAAGGAGGTAGAACCCGGCACAAGTTTATTG +
Preference number: 4 (lower is better)
Translates to: KKEAQSPCIKYP*HKEVEPGTSLL
Trigger: CAATAAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CTTCATATCCATAGCAACGATTTCCATGGCACCAACACCTCTGCGTTCCACAGCAGTAAATCCTTTAGCTaGACCTGGTCTTTTGAAGGA +
Preference number: 4 (lower is better)
Translates to: LHIHSNDFHGTNTSAFHSSKSFS*TWSFEG
Trigger: TCCTTCAAAAGACCAGGTTCAGCTAAAGGATTTACT...GCTGTGGAACGCAGAGGTGTTGGTGCCATGGAAATCGTTGCTATGGATATGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR TCA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAGTGTTTTTCAATCAGTaGCTGCAATACCCCTTTGGC +
Preference number: 4 (lower is better)
Translates to: PLHLLSNASHSGPSANMEVFFNQ*LQYPFG
Trigger: GCCAAAGGGGTATTGCAGTCACTGATTGAAAAACAC...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CCTCTACTCTGTTTGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTACACAATTTGCTGGAATaGTCAAACCTACAATCCGCT +
Preference number: 4 (lower is better)
Translates to: PLLCLRHQLCCLFPGLSLHNLLE*SNLQSA
Trigger: AGCGGATTGTAGGTTTGATCATTCCAGCAAATTGTG...TAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGCACAATTTGCTGGAATaGTCAAACCTACAATCCGCT +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGHNLLE*SNLQSA
Trigger: AGCGGATTGTAGGTTTGATCATTCCAGCAAATTGTG...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGGTCAAAGTGATGGTTTaGCTATTCGTTGTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGVKVMV*LFVVAG
Trigger: ACCTGCAACAACGAATAGGCAAACCATCACTTTGAC...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp GGTCACTCCAGTAAAGCTCAGCTGCCGTGCAATGTACATTCCTCTAAGCTTCATGTCAAAGTGATGGTTTaGCTATTCGTTGTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: GHSSKAQLPCNVHSSKLHVKVMV*LFVVAG
Trigger: ACCTGCAACAACGAATAGGCAAACCATCACTTTGAC...ATGAAGCTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTTACTGGAGTGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR GCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAGTCAAAGTGATGGTTTaGCTATTCGTTGTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTVKVMV*LFVVAG
Trigger: ACCTGCAACAACGAATAGGCAAACCATCACTTTGAC...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGAACCCACAGCTTGACTaGTTTGTTATACATTTTCAC +
Preference number: 4 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKNPQLD*FVIHFH
Trigger: GTGAAAATGTATAACAAAGCAGTCAAGCTGTGGGTT...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp ATCCACACACAGAACGAGGGGGCTGGCACCTTAGGACACAGAATCGTTCTCATTAACCCACAGCTTGACTaGTTTGTTATACATTTTCAC +
Preference number: 4 (lower is better)
Translates to: IHTQNEGAGTLGHRIVLINPQLD*FVIHFH
Trigger: GTGAAAATGTATAACAAAGCAGTCAAGCTGTGGGTT...AATGAGAACGATTCTGTGTCCTAAGGTGCCAGCCCCCTCGTTCTGTGTGTGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGTTACAAGGCTGCTGTTaGTGTTGCTGTTACTGTTGG +
Preference number: 4 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKLQGCC*CCCYCW
Trigger: CCAACAGTAACAGCAACAGCAACAGCAGCCTTGTAA...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTTTTAGCAACAATAGATaGAAATCTCTGTTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPFSNNR*KSLFSS
Trigger: GCTGGAGAACAGAGATTTGCATCTATTGTTGCTAAA...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTTGCAGTAAGTGTGTCTaGAAAATACTGAAACAGCGC +
Preference number: 4 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFCSKCV*KILKQR
Trigger: GCGCTGTTTCAGTATTTTGCAGACACACTTACTGCA...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CCTCTACTCTGTTTGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTAGTGTTTGCAGTGGTCTaGATGAACTTTGTCAAAGTG +
Preference number: 4 (lower is better)
Translates to: PLLCLRHQLCCLFPGLSLVFAVV*MNFVKV
Trigger: CACTTTGACAAAGTTCATCCAGACCACTGCAAACAC...TAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AACGATTTCCATGGCACCAACACCTCTGCGTTCCACAGCTTGGATAAAATCACTAGCAATATTGGCGGGTaGCTTCAGTTTCATGAGTTC +
Preference number: 4 (lower is better)
Translates to: NDFHGTNTSAFHSLDKITSNIGG*LQFHEF
Trigger: GAACTCATGAAACTGAAGCCACCCGCCAATATTGCT...AGTGATTTTATCCAAGCTGTGGAACGCAGAGGTGTTGGTGCCATGGAAATCGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR CCA 90 bp ATCCACACACAGAACGAGGGGGCTGGCACCTTAGGACACAGAATCGTTCTCATTGAAGCTGTTTTAACCTaGTCTTATATTTACCACCAG +
Preference number: 4 (lower is better)
Translates to: IHTQNEGAGTLGHRIVLIEAVLT*SYIYHQ
Trigger: CTGGTGGTAAATATAAGACCAGGTTAAAACAGCTTC...AATGAGAACGATTCTGTGTCCTAAGGTGCCAGCCCCCTCGTTCTGTGTGTGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTCTGCGTTCCACAGCTTaGATAAAATCACTAAATTCT +
Preference number: 4 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPLRSTA*IKSLNS
Trigger: AGAATTTAGTGATTTTATCCAAGCTGTGGAACGCAG...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAAAGTTTCTTCCTGTCTaGAGCAGGGAAGTGTTTTTC +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTKFLPV*SREVFF
Trigger: GAAAAACACTTCCCTGCTCCAGACAGGAAGAAACTT...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGATCTTCCGTTCTTCTTaGCATTCTGAACAACTGCAG +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGIFRSS*HSEQLQ
Trigger: CTGCAGTTGTTCAGAATGCCAAGAAGAACGGAAGAT...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAGTGTATAACTCTACATaGCCGGAGGTTGAATACCCT +
Preference number: 4 (lower is better)
Translates to: PLHLLSNASHSGPSANMEVYNST*PEVEYP
Trigger: AGGGTATTCAACCTCCGGCCATGTAGAGTTATACAC...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGGTGTATAACTCTACATaGCCGGAGGTTGAATACCCT +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQVYNST*PEVEYP
Trigger: AGGGTATTCAACCTCCGGCCATGTAGAGTTATACAC...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 72 bp AAGCACCAGTGGCACTGGCATAAACAACTCTGGCTTTaGGCAATTTGTTCTGAAGCTCTAAAACAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: KHQWHWHKQLWL*AICSEALKQPS
Trigger: GCTTGGCTGTTTTAGAGCTTCAGAACAAATTGCCAAAAGCCAGAGTTGTTTATGCCAGTGCCACTGGTGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR TCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAAATAGTTTTCATATATaGTCCCTGCTATTGTCCGGC +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTNSFHI*SLLLSG
Trigger: GCCGGACAATAGCAGGGATCATATATGAAAACTATT...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTAATAGTTTTCATATATaGTCCCTGCTATTGTCCGGC +
Preference number: 4 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFNSFHI*SLLLSG
Trigger: GCCGGACAATAGCAGGGATCATATATGAAAACTATT...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTTTTGGCAATTTGTTCTaGAGCTCTAAAACAGCCAAG +
Preference number: 4 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFFGNLF*SSKTAK
Trigger: CTTGGCTGTTTTAGAGCTTCAGAACAAATTGCCAAA...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
44% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAGCTAACAAGGCACTTTaGATGGAATCTGGATCTATA +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTANKAL*MESGSI
Trigger: TATAGATCCAGATTCCATTCAAAGTGCCTTGTTAGC...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGACCTTTGCTTCTCTGTaGTGTTTAGAATCTCCACAG +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQTFASL*CLESPQ
Trigger: CTGTGGAGATTCTAAACATCACAGAGAAGCAAAGGT...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGTTTTCAATCAGTGACTaGAATACCCCTTTGGCAGTT +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGFSISD*NTPLAV
Trigger: AACTGCCAAAGGGGTATTGCAGTCACTGATTGAAAA...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTATTTCTAATTTGAGTTaGTTCCCAGTGTTTGGTCGG +
Preference number: 4 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFISNLS*FPVFGR
Trigger: CCGACCAAACACTGGGAAGCAACTCAAATTAGAAAT...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGATTCGTTGTTGCAGGTaGTGTTTTAGTCATTACAAT +
Preference number: 4 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKIRCCR*CFSHYN
Trigger: ATTGTAATGACTAAAACACCACCTGCAACAACGAAT...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp TCCCTCACCCCATATTCCAAGACGGTTCATGTAGGCCATGTTGCGTGGTTCAGAATTCGTTGTTGCAGGTaGTGTTTTAGTCATTACAAT +
Preference number: 4 (lower is better)
Translates to: SLTPYSKTVHVGHVAWFRIRCCR*CFSHYN
Trigger: ATTGTAATGACTAAAACACCACCTGCAACAACGAAT...TCTGAACCACGCAACATGGCCTACATGAACCGTCTTGGAATATGGGGTGAGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR CCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGGTGTTTGCAGTGGTCTaGATGAACTTTGTCAAAGTG +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQVFAVV*MNFVKV
Trigger: CACTTTGACAAAGTTCATCCAGACCACTGCAAACAC...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AAAGCTACAAATGAACCTGAATGCATGGCACGCAACCCTTCACTTCATGCTGTAAGCAATATTGGCGGGTaGCTTCAGTTTCATGAGTTC +
Preference number: 4 (lower is better)
Translates to: KATNEPECMARNPSLHAVSNIGG*LQFHEF
Trigger: GAACTCATGAAACTGAAGCCACCCGCCAATATTGCT...TACAGCATGAAGTGAAGGGTTGCGTGCCATGCATTCAGGTTCATTTGTAGCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp ATCAATCAAATCTGCAGCTTGTTGAAATCGCTCTCTAGCGATAACCCACTGAAACAACAGGTACCTTCATaGTGGGGGAAAAGCTCCTCA +
Preference number: 4 (lower is better)
Translates to: INQICSLLKSLSSDNPLKQQVPS*WGKSSS
Trigger: TGAGGAGCTTTTCCCCCACCATGAAGGTACCTGTTG...TTTCAGTGGGTTATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTTGATTGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR CCA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGCACTCCCATTGTGTTTaGAAGAAATCTTACCATATT +
Preference number: 4 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKHSHCV*KKSYHI
Trigger: AATATGGTAAGATTTCTTCCAAACACAATGGGAGTG...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp TTCCAAGACGGTTCATGTAGGCCATGTTGCGTGGTTCAGAAGCACCTAGTAAACAACAACTCTGGCTTTTaGCAATTTGTTCTGAAGCTC +
Preference number: 4 (lower is better)
Translates to: FQDGSCRPCCVVQKHLVNNNSGF*QFVLKL
Trigger: GAGCTTCAGAACAAATTGCCAAAAGCCAGAGTTGTT...GTTTACTAGGTGCTTCTGAACCACGCAACATGGCCTACATGAACCGTCTTGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR CCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAACTAAATTCTCTGAATaGAGTTCCCTCACCCCATAT +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTTKFSE*SSLTPY
Trigger: ATATGGGGTGAGGGAACTCCATTCAGAGAATTTAGT...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGACTAAATTCTCTGAATaGAGTTCCCTCACCCCATAT +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGTKFSE*SSLTPY
Trigger: ATATGGGGTGAGGGAACTCCATTCAGAGAATTTAGT...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAACCACCCTTTTCACTTTaGATGCTATACACAGGTACT +
Preference number: 4 (lower is better)
Translates to: PLHLLSNASHSGPSANMEPPFSL*MLYTGT
Trigger: AGTACCTGTGTATAGCATCCAAAGTGAAAAGGGTGG...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AGTAAAGCTCAGCTGCCGTGCAATGTACATTCCTCTAAGCTTCATATCCATAGCACTTACCAGTGGCACTaGCATAAACAACTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: SKAQLPCNVHSSKLHIHSTYQWH*HKQLWL
Trigger: AAGCCAGAGTTGTTTATGCCAGTGCCACTGGTAAGT...GCTATGGATATGAAGCTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTTACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
3UTR CAA 72 bp GATTTCCATGGCACCAACACCTCTGCGTTCCACAGCTaGGATAAAATCACTAAATTCTCTGAATGGAGTTCC +
Preference number: 4 (lower is better)
Translates to: DFHGTNTSAFHS*DKITKFSEWSS
Trigger: GGAACTCCATTCAGAGAATTTAGTGATTTTATCCAAGCTGTGGAACGCAGAGGTGTTGGTGCCATGGAAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199004.5
ENSMUST00000200674.2
3UTR CAA 72 bp CTTCATTCTCTGCTCAGCATCAATCAAATCTGCAGCTaGTTGAAATCGCTCTCTAGCGATAACCCACAGCTT +
Preference number: 4 (lower is better)
Translates to: LHSLLSINQICS*LKSLSSDNPQL
Trigger: AAGCTGTGGGTTATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTTGATTGATGCTGAGCAGAGAATGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
3UTR CAA 72 bp GGGTTTCAGAACAGCCAGGGATATTATGCAAAGTCCTaGTCTGCCTCCAATCCCCAGAAAGAAAACACAATA +
Preference number: 4 (lower is better)
Translates to: GFQNSQGYYAKS*SASNPQKENTI
Trigger: TATTGTGTTTTCTTTCTGGGGATTGGAGGCAGACAAGGACTTTGCATAATATCCCTGGCTGTTCTGAAACCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR TCA 90 bp CACTCCAGTAAAGCTCAGCTGCCGTGCAATGTACATTCCTCTAAGCTTCATATCAATAGTTTTCATATATaGTCCCTGCTATTGTCCGGC +
Preference number: 4 (lower is better)
Translates to: HSSKAQLPCNVHSSKLHINSFHI*SLLLSG
Trigger: GCCGGACAATAGCAGGGATCATATATGAAAACTATT...GATATGAAGCTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTTACTGGAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR TCA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAATTTGGCAATTTGTTCTaGAGCTCTAAAACAGCCAAG +
Preference number: 4 (lower is better)
Translates to: PLHLLSNASHSGPSANMEFGNLF*SSKTAK
Trigger: CTTGGCTGTTTTAGAGCTTCAGAACAAATTGCCAAA...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp AAAGCTACAAATGAACCTGAATGCATGGCACGCAACCCTTCACTTCATGCTGTAAAATCTGCAGCTTGTTaGAATCGCTCTCTAGCGATA +
Preference number: 4 (lower is better)
Translates to: KATNEPECMARNPSLHAVKSAAC*NRSLAI
Trigger: TATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTT...TACAGCATGAAGTGAAGGGTTGCGTGCCATGCATTCAGGTTCATTTGTAGCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGGCTAACAAGGCACTTTaGATGGAATCTGGATCTATA +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQANKAL*MESGSI
Trigger: TATAGATCCAGATTCCATTCAAAGTGCCTTGTTAGC...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTAATTCTAAAGTCATGTaGACTCTTCGCCTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFNSKVM*TLRLWF
Trigger: AAACCAAAGGCGAAGAGTTCACATGACTTTAGAATT...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CCTCTACTCTGTTTGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTAAATTCTAAAGTCATGTaGACTCTTCGCCTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: PLLCLRHQLCCLFPGLSLNSKVM*TLRLWF
Trigger: AAACCAAAGGCGAAGAGTTCACATGACTTTAGAATT...TAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGAAGAGTAAGAATTCCTaGGCGATCCTCTACATTAAT +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGKSKNS*AILYIN
Trigger: ATTAATGTAGAGGATCGCTCAGGAATTCTTACTCTT...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp AAAGCTACAAATGAACCTGAATGCATGGCACGCAACCCTTCACTTCATGCTGTAGAGTTAGAAACTTCTTaGCATCACTCTTCCTCACCT +
Preference number: 4 (lower is better)
Translates to: KATNEPECMARNPSLHAVELETS*HHSSSP
Trigger: AGGTGAGGAAGAGTGATGTCAAGAAGTTTCTAACTC...TACAGCATGAAGTGAAGGGTTGCGTGCCATGCATTCAGGTTCATTTGTAGCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGTTGCCTATTCGTTGTTaGAGGTGGTGTTTTAGTCAT +
Preference number: 4 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKLPIRC*RWCFSH
Trigger: ATGACTAAAACACCACCTGCAACAACGAATAGGCAA...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AGTAAAGCTCAGCTGCCGTGCAATGTACATTCCTCTAAGCTTCATATCCATAGCATCAGTAGCTGCAGTTaGAACTGGCTGAGCAATATT +
Preference number: 4 (lower is better)
Translates to: SKAQLPCNVHSSKLHIHSISSCS*NWLSNI
Trigger: AATATTGCTCAGCCAGTTGCAACTGCAGCTACTGAT...GCTATGGATATGAAGCTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTTACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR GCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGCCATCCATGAACCTTTaGTTCTCTGTGATGTTTAGA +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQPSMNL*FSVMFR
Trigger: TCTAAACATCACAGAGAAGCAAAGGTTCATGGATGG...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAATCTCTAGATTCTGTTaGTCTTCTGTCACCATGTGT +
Preference number: 4 (lower is better)
Translates to: PLHLLSNASHSGPSANMEISRFC*SSVTMC
Trigger: ACACATGGTGACAGAAGAGCAACAGAATCTAGAGAT...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp TATTCAAGTTACTGGGTAACGATGACAACAACATACAGCAGAAGCCAAGTGTTTTGGTCCAGTCAGCTCTaGCCAAATCTTGGTTGCTTC +
Preference number: 4 (lower is better)
Translates to: YSSYWVTMTTTYSRSQVFWSSQL*PNLGCF
Trigger: GAAGCAACCAAGATTTGGGCAGAGCTGACTGGACCA...AAACACTTGGCTTCTGCTGTATGTTGTTGTCATCGTTACCCAGTAACTTGAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAATTTCTAATTTGAGTTaGTTCCCAGTGTTTGGTCGG +
Preference number: 4 (lower is better)
Translates to: PLHLLSNASHSGPSANMEISNLS*FPVFGR
Trigger: CCGACCAAACACTGGGAAGCAACTCAAATTAGAAAT...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAAGGAGACACACAATTTaGTGGAATGATCAAACCTAC +
Preference number: 4 (lower is better)
Translates to: PLHLLSNASHSGPSANMERRHTI*WNDQTY
Trigger: GTAGGTTTGATCATTCCAGCAAATTGTGTGTCTCCT...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp TATTCAAGTTACTGGGTAACGATGACAACAACATACAGCAGAAGCCAAGTGTTTCAACAGGTACCTTCATaGTGGGGGAAAAGCTCCTCA +
Preference number: 4 (lower is better)
Translates to: YSSYWVTMTTTYSRSQVFQQVPS*WGKSSS
Trigger: TGAGGAGCTTTTCCCCCACCATGAAGGTACCTGTTG...AAACACTTGGCTTCTGCTGTATGTTGTTGTCATCGTTACCCAGTAACTTGAATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAAACAACTCTGGCTTTTaGCAATTTGTTCTGAAGCTC +
Preference number: 4 (lower is better)
Translates to: PLHLLSNASHSGPSANMENNSGF*QFVLKL
Trigger: GAGCTTCAGAACAAATTGCCAAAAGCCAGAGTTGTT...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGTGGCATAAACAACTCTaGCTTTTGGCAATTTGTTCT +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGWHKQL*LLAICS
Trigger: AGAACAAATTGCCAAAAGCCAGAGTTGTTTATGCCA...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AAAGCTACAAATGAACCTGAATGCATGGCACGCAACCCTTCACTTCATGCTGTAATCTTCCGTTCTTCTTaGCATTCTGAACAACTGCAG +
Preference number: 4 (lower is better)
Translates to: KATNEPECMARNPSLHAVIFRSS*HSEQLQ
Trigger: CTGCAGTTGTTCAGAATGCCAAGAAGAACGGAAGAT...TACAGCATGAAGTGAAGGGTTGCGTGCCATGCATTCAGGTTCATTTGTAGCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 72 bp CATTCTCTGCTCAGCATCAATCAAATCTGCAGCTTGTaGAAATCGCTCTCTAGCGATAACCCACTGAAAACA +
Preference number: 4 (lower is better)
Translates to: HSLLSINQICSL*KSLSSDNPLKT
Trigger: TGTTTTCAGTGGGTTATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTTGATTGATGCTGAGCAGAGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR CAA 72 bp CTTCATTCTCTGCTCAGCATCAATCAAATCTGCAGCTaGTTGAAATCGCTCTCTAGCGATAACCCACTGAAA +
Preference number: 4 (lower is better)
Translates to: LHSLLSINQICS*LKSLSSDNPLK
Trigger: TTTCAGTGGGTTATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTTGATTGATGCTGAGCAGAGAATGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
3UTR CAA 72 bp CTACTTGTGATACTAAGGCAGGAAGACTGCTATGAGTaGATCCTACACAACGCACCAAATACCAAACCAATC +
Preference number: 4 (lower is better)
Translates to: LLVILRQEDCYE*ILHNAPNTKPI
Trigger: GATTGGTTTGGTATTTGGTGCGTTGTGTAGGATCAACTCATAGCAGTCTTCCTGCCTTAGTATCACAAGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR GCA 90 bp GAAAGAAAAACTATTCATAGTTCACGTCTGTCAAATCCTGAAGCACCTGACATTCTCTGCGTAGGTCTCTaGATGACCCATTTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: ERKTIHSSRLSNPEAPDILCVGL*MTHFFL
Trigger: GAGGAAGAAATGGGTCATGCAGAGACCTACGCAGAG...AATGTCAGGTGCTTCAGGATTTGACAGACGTGAACTATGAATAGTTTTTCTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR GCA 90 bp ATCAATCAAATCTGCAGCTTGTTGAAATCGCTCTCTAGCGATAACCCACTGAAATATTGGCATATACTCTaGGTAGGTCTCTGCATGACC +
Preference number: 4 (lower is better)
Translates to: INQICSLLKSLSSDNPLKYWHIL*VGLCMT
Trigger: GGTCATGCAGAGACCTACGCAGAGTATATGCCAATA...TTTCAGTGGGTTATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTTGATTGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR GCA 90 bp CAGCTTGACTGCTTTGTTATACATTTTCACATAGCTTTGAGAAAGAAGAACTTCGTAACTGCCTCAAGCTaGAATGCAGACAGCCAGCCA +
Preference number: 4 (lower is better)
Translates to: QLDCFVIHFHIALRKKNFVTASS*NADSQP
Trigger: TGGCTGGCTGTCTGCATTGCAGCTTGAGGCAGTTAC...GAAGTTCTTCTTTCTCAAAGCTATGTGAAAATGTATAACAAAGCAGTCAAGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR GCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAGATTTCTTCATTCTCTaGTCAGCATCAATCAAATCT +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTDFFIL*SASIKS
Trigger: AGATTTGATTGATGCTGAGCAGAGAATGAAGAAATC...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACACCTTTTCACTTTGGATaGTATACACAGGTACTTAAA +
Preference number: 4 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTPFHFG*YTQVLK
Trigger: TTTAAGTACCTGTGTATAGCATCCAAAGTGAAAAGG...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AAAGCTACAAATGAACCTGAATGCATGGCACGCAACCCTTCACTTCATGCTGTATTTTCAATCAGTGACTaGAATACCCCTTTGGCAGTT +
Preference number: 4 (lower is better)
Translates to: KATNEPECMARNPSLHAVFSISD*NTPLAV
Trigger: AACTGCCAAAGGGGTATTGCAGTCACTGATTGAAAA...TACAGCATGAAGTGAAGGGTTGCGTGCCATGCATTCAGGTTCATTTGTAGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp AAAGCTACAAATGAACCTGAATGCATGGCACGCAACCCTTCACTTCATGCTGTAAGGAGACACACAATTTaGTGGAATGATCAAACCTAC +
Preference number: 4 (lower is better)
Translates to: KATNEPECMARNPSLHAVRRHTI*WNDQTY
Trigger: GTAGGTTTGATCATTCCAGCAAATTGTGTGTCTCCT...TACAGCATGAAGTGAAGGGTTGCGTGCCATGCATTCAGGTTCATTTGTAGCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp ATTTCCATGGCACCAACACCTCTGCGTTCCACAGCTTGGATAAAATCACTAAATGTGTTTGCAGTGGTCTaGATGAACTTTGTCAAAGTG +
Preference number: 4 (lower is better)
Translates to: ISMAPTPLRSTAWIKSLNVFAVV*MNFVKV
Trigger: CACTTTGACAAAGTTCATCCAGACCACTGCAAACAC...ATTTAGTGATTTTATCCAAGCTGTGGAACGCAGAGGTGTTGGTGCCATGGAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR CCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGCACTCCCATTGTGTTTaGAAGAAATCTTACCATATT +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGHSHCV*KKSYHI
Trigger: AATATGGTAAGATTTCTTCCAAACACAATGGGAGTG...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp TTCCAAGACGGTTCATGTAGGCCATGTTGCGTGGTTCAGAAGCACCTAGTAAACCACTCCCATTGTGTTTaGAAGAAATCTTACCATATT +
Preference number: 4 (lower is better)
Translates to: FQDGSCRPCCVVQKHLVNHSHCV*KKSYHI
Trigger: AATATGGTAAGATTTCTTCCAAACACAATGGGAGTG...GTTTACTAGGTGCTTCTGAACCACGCAACATGGCCTACATGAACCGTCTTGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR CCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGGAAGCTGTTTTAACCTaGTCTTATATTTACCACCAG +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQEAVLT*SYIYHQ
Trigger: CTGGTGGTAAATATAAGACCAGGTTAAAACAGCTTC...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AGAACTTCCTCAATTTTGAAGGTCACTCCAGTAAAGCTCAGCTGCCGTGCAATGGAAGCTGTTTTAACCTaGTCTTATATTTACCACCAG +
Preference number: 4 (lower is better)
Translates to: RTSSILKVTPVKLSCRAMEAVLT*SYIYHQ
Trigger: CTGGTGGTAAATATAAGACCAGGTTAAAACAGCTTC...CATTGCACGGCAGCTGAGCTTTACTGGAGTGACCTTCAAAATTGAGGAAGTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR CCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGACTGCAATACCCCTTTaGCAGTTGAAACAAAATCAT +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQTAIPL*QLKQNH
Trigger: ATGATTTTGTTTCAACTGCCAAAGGGGTATTGCAGT...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGACAAGGCACTTTGAATaGAATCTGGATCTATACTTT +
Preference number: 4 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGTRHFE*NLDLYF
Trigger: AAAGTATAGATCCAGATTCCATTCAAAGTGCCTTGT...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 72 bp ATTTCTGAGGGAACAATCGGTGACAGACCCTCATTCTaGACTACTAACTTACAAAGACAGCCAAATGTAGAC +
Preference number: 4 (lower is better)
Translates to: ISEGTIGDRPSF*TTNLQRQPNVD
Trigger: GTCTACATTTGGCTGTCTTTGTAAGTTAGTAGTCAAGAATGAGGGTCTGTCACCGATTGTTCCCTCAGAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
3UTR CAA 72 bp TGGGCAAATGAACCCTGCTCAGTGAAGCTGACACACTaGTATTGCATGAGACTGGATTTGAAAGTTACATAT +
Preference number: 4 (lower is better)
Translates to: WANEPCSVKLTH*YCMRLDLKVTY
Trigger: ATATGTAACTTTCAAATCCAGTCTCATGCAATACAAGTGTGTCAGCTTCACTGAGCAGGGTTCATTTGCCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp TATTCAAGTTACTGGGTAACGATGACAACAACATACAGCAGAAGCCAAGTGTTTGCTTCTCCTGTAGACTaGAGACCAATTACAACACAC +
Preference number: 4 (lower is better)
Translates to: YSSYWVTMTTTYSRSQVFASPVD*RPITTH
Trigger: GTGTGTTGTAATTGGTCTTCAGTCTACAGGAGAAGC...AAACACTTGGCTTCTGCTGTATGTTGTTGTCATCGTTACCCAGTAACTTGAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp TATTCAAGTTACTGGGTAACGATGACAACAACATACAGCAGAAGCCAAGTGTTTAAAGCTCAGCTGCCGTaGAATGTACATTCCTCTAAG +
Preference number: 4 (lower is better)
Translates to: YSSYWVTMTTTYSRSQVFKAQLP*NVHSSK
Trigger: CTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTT...AAACACTTGGCTTCTGCTGTATGTTGTTGTCATCGTTACCCAGTAACTTGAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGCCTTTTCACTTTGGATaGTATACACAGGTACTTAAA +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQPFHFG*YTQVLK
Trigger: TTTAAGTACCTGTGTATAGCATCCAAAGTGAAAAGG...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp TATTCAAGTTACTGGGTAACGATGACAACAACATACAGCAGAAGCCAAGTGTTTGACTTGTTACAAGGCTaGTGTTGCTGTTGCTGTTAC +
Preference number: 4 (lower is better)
Translates to: YSSYWVTMTTTYSRSQVFDLLQG*CCCCCY
Trigger: GTAACAGCAACAGCAACAGCAGCCTTGTAACAAGTC...AAACACTTGGCTTCTGCTGTATGTTGTTGTCATCGTTACCCAGTAACTTGAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR GCA 90 bp TATTCAAGTTACTGGGTAACGATGACAACAACATACAGCAGAAGCCAAGTGTTTCTTAGCCGCACTATCTaGATTTTCACATTTGTGCCG +
Preference number: 4 (lower is better)
Translates to: YSSYWVTMTTTYSRSQVFLSRTI*IFTFVP
Trigger: CGGCACAAATGTGAAAATGCAGATAGTGCGGCTAAG...AAACACTTGGCTTCTGCTGTATGTTGTTGTCATCGTTACCCAGTAACTTGAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp ATTTCCATGGCACCAACACCTCTGCGTTCCACAGCTTGGATAAAATCACTAAATTATTTACCACCAGACTaGCTTTCACCAATAAGGGAA +
Preference number: 4 (lower is better)
Translates to: ISMAPTPLRSTAWIKSLNYLPPD*LSPIRE
Trigger: TTCCCTTATTGGTGAAAGCCAGTCTGGTGGTAAATA...ATTTAGTGATTTTATCCAAGCTGTGGAACGCAGAGGTGTTGGTGCCATGGAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR CCA 90 bp AAGAACTTCCTCAATTTTGAAGGTCACTCCAGTAAAGCTCAGCTGCCGTGCAATTGGCATAAACAACTCTaGCTTTTGGCAATTTGTTCT +
Preference number: 4 (lower is better)
Translates to: KNFLNFEGHSSKAQLPCNWHKQL*LLAICS
Trigger: AGAACAAATTGCCAAAAGCCAGAGTTGTTTATGCCA...ATTGCACGGCAGCTGAGCTTTACTGGAGTGACCTTCAAAATTGAGGAAGTTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR CCA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGAGACACACAATTTGCTaGAATGATCAAACCTACAAT +
Preference number: 4 (lower is better)
Translates to: LFTKKTREILQVLLWKHQRHTIC*NDQTYN
Trigger: ATTGTAGGTTTGATCATTCCAGCAAATTGTGTGTCT...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AACTTCCTCAATTTTGAAGGTCACTCCAGTAAAGCTCAGCTGCCGTGCAATGTAATATATACTTACCAGTaGCACTGGCATAAACAACTC +
Preference number: 4 (lower is better)
Translates to: NFLNFEGHSSKAQLPCNVIYTYQ*HWHKQL
Trigger: GAGTTGTTTATGCCAGTGCCACTGGTAAGTATATAT...TACATTGCACGGCAGCTGAGCTTTACTGGAGTGACCTTCAAAATTGAGGAAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR GCA 90 bp TATTCAAGTTACTGGGTAACGATGACAACAACATACAGCAGAAGCCAAGTGTTTATCTCTAGATTCTGTTaGTCTTCTGTCACCATGTGT +
Preference number: 4 (lower is better)
Translates to: YSSYWVTMTTTYSRSQVFISRFC*SSVTMC
Trigger: ACACATGGTGACAGAAGAGCAACAGAATCTAGAGAT...AAACACTTGGCTTCTGCTGTATGTTGTTGTCATCGTTACCCAGTAACTTGAATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp TATTCAAGTTACTGGGTAACGATGACAACAACATACAGCAGAAGCCAAGTGTTTTGGTCTCTTCAGAGATaGAGGTTTTGTACCAAACAT +
Preference number: 4 (lower is better)
Translates to: YSSYWVTMTTTYSRSQVFWSLQR*RFCTKH
Trigger: ATGTTTGGTACAAAACCTCCATCTCTGAAGAGACCA...AAACACTTGGCTTCTGCTGTATGTTGTTGTCATCGTTACCCAGTAACTTGAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp TATTCAAGTTACTGGGTAACGATGACAACAACATACAGCAGAAGCCAAGTGTTTAACAACTCTGGCTTTTaGCAATTTGTTCTGAAGCTC +
Preference number: 4 (lower is better)
Translates to: YSSYWVTMTTTYSRSQVFNNSGF*QFVLKL
Trigger: GAGCTTCAGAACAAATTGCCAAAAGCCAGAGTTGTT...AAACACTTGGCTTCTGCTGTATGTTGTTGTCATCGTTACCCAGTAACTTGAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CCA 90 bp AACCCACAGCTTGACTGCTTTGTTATACATTTTCACATAGCTTTGAGAAAGAAGTGGTCTCTTCAGAGATaGAGGTTTTGTACCAAACAT +
Preference number: 4 (lower is better)
Translates to: NPQLDCFVIHFHIALRKKWSLQR*RFCTKH
Trigger: ATGTTTGGTACAAAACCTCCATCTCTGAAGAGACCA...CTTCTTTCTCAAAGCTATGTGAAAATGTATAACAAAGCAGTCAAGCTGTGGGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR CCA 90 bp TATTCAAGTTACTGGGTAACGATGACAACAACATACAGCAGAAGCCAAGTGTTTACTGCAATACCCCTTTaGCAGTTGAAACAAAATCAT +
Preference number: 4 (lower is better)
Translates to: YSSYWVTMTTTYSRSQVFTAIPL*QLKQNH
Trigger: ATGATTTTGTTTCAACTGCCAAAGGGGTATTGCAGT...AAACACTTGGCTTCTGCTGTATGTTGTTGTCATCGTTACCCAGTAACTTGAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR TCA 90 bp CAGCTTGACTGCTTTGTTATACATTTTCACATAGCTTTGAGAAAGAAGAACTTCTTTGGCAATTTGTTCTaGAGCTCTAAAACAGCCAAG +
Preference number: 4 (lower is better)
Translates to: QLDCFVIHFHIALRKKNFFGNLF*SSKTAK
Trigger: CTTGGCTGTTTTAGAGCTTCAGAACAAATTGCCAAA...GAAGTTCTTCTTTCTCAAAGCTATGTGAAAATGTATAACAAAGCAGTCAAGCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR CCA 90 bp TATTCAAGTTACTGGGTAACGATGACAACAACATACAGCAGAAGCCAAGTGTTTACAAGGCACTTTGAATaGAATCTGGATCTATACTTT +
Preference number: 4 (lower is better)
Translates to: YSSYWVTMTTTYSRSQVFTRHFE*NLDLYF
Trigger: AAAGTATAGATCCAGATTCCATTCAAAGTGCCTTGT...AAACACTTGGCTTCTGCTGTATGTTGTTGTCATCGTTACCCAGTAACTTGAATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTCTCACTACCCGCCCTTaGCGGCCAGTCATCTCAGCC +
Preference number: 5 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPLTTRP*RPVISA
Trigger: GGCTGAGATGACTGGCCGCAAAGGGCGGGTAGTGAG...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS TCA 90 bp TCTGTCTCCAACCCTAGTTCTAATGCACTAAGTGGCACCGACTGTTaGACTGAAGGGGGCGTAGGGGTGGCAAGGCCAGCATCTCCACCA +
Preference number: 5 (lower is better)
Translates to: SVSNPSSNALSGTDC*TEGGVGVARPASPP
Trigger: TGGTGGAGATGCTGGCCTTGCCACCCCTACGCCCCCTTCAGTTCAACAGTCGGTGCCACTTAGTGCATTAGAACTAGGGTTGGAGACAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000196644.5
ENSMUST00000197777.2
ENSMUST00000199004.5
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACTTGGCTGGTGCACTGTaGGAAGCAGGCGAGATGACT +
Preference number: 5 (lower is better)
Translates to: QRLGKGGPILFSGATKGDLAGAL*EAGEMT
Trigger: AGTCATCTCGCCTGCTTCCAACAGTGCACCAGCCAA...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS TCA 90 bp GACAGAGGCCAGAACACCTTCCACTTTTGTCCAGACGCTCAGTACTaGGCCACACAGTACATAGTACGTGCGGCAGCGGAGACCAATCTC +
Preference number: 5 (lower is better)
Translates to: DRGQNTFHFCPDAQY*ATQYIVRAAAETNL
Trigger: GAGATTGGTCTCCGCTGCCGCACGTACTATGTACTGTGTGGCTCAGTACTGAGCGTCTGGACAAAAGTGGAAGGTGTTCTGGCCTCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACAGGCTGCTGTTGCTGTaGCTGTTACTGTTGGCTGGT +
Preference number: 5 (lower is better)
Translates to: QRLGKGGPILFSGATKGDRLLLL*LLLLAG
Trigger: ACCAGCCAACAGTAACAGCAACAGCAACAGCAGCCT...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CCTCTACTCTGTTTGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTACTCACTACCCGCCCTTaGCGGCCAGTCATCTCAGCC +
Preference number: 5 (lower is better)
Translates to: PLLCLRHQLCCLFPGLSLLTTRP*RPVISA
Trigger: GGCTGAGATGACTGGCCGCAAAGGGCGGGTAGTGAG...TAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS GCA 90 bp GAATCTCCACAGGCACATCAAGTTCAGACCTCGACTCGTAGGATATaGTTCCGTCATCATTGCTCACTACCCGCCCTTTGCGGCCAGTCA +
Preference number: 5 (lower is better)
Translates to: ESPQAHQVQTSTRRI*FRHHCSLPALCGQS
Trigger: TGACTGGCCGCAAAGGGCGGGTAGTGAGCAATGATGACGGAAGCATATCCTACGAGTCGAGGTCTGAACTTGATGTGCCTGTGGAGATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp TCCCTCACCCCATATTCCAAGACGGTTCATGTAGGCCATGTTGCGTGGTTCAGACATCGGCTCTGGCTCTaGTTTGACAGGAACTGCTGC +
Preference number: 5 (lower is better)
Translates to: SLTPYSKTVHVGHVAWFRHRLWL*FDRNCC
Trigger: GCAGCAGTTCCTGTCAAACAAGAGCCAGAGCCGATG...TCTGAACCACGCAACATGGCCTACATGAACCGTCTTGGAATATGGGGTGAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS GCA 90 bp AAACCTACAATCCGCTGCCCATCTTCGGTCCTTAGCCGCACTATCTaGATTTTCACATTTGTGCCGCTGACAGAGGCCAGAACACCTTCC +
Preference number: 5 (lower is better)
Translates to: KPTIRCPSSVLSRTI*IFTFVPLTEARTPS
Trigger: GGAAGGTGTTCTGGCCTCTGTCAGCGGCACAAATGTGAAAATGCAGATAGTGCGGCTAAGGACCGAAGATGGGCAGCGGATTGTAGGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTCTGCCCAAATCTTGGTaGCTTCCTCCCAGGACATTC +
Preference number: 5 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPLPKSW*LPPRTF
Trigger: GAATGTCCTGGGAGGAAGCAACCAAGATTTGGGCAG...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS TCA 90 bp CTTCGGTCCTTAGCCGCACTATCTGCATTTTCACATTTGTGCCGCTaGCAGAGGCCAGAACACCTTCCACTTTTGTCCAGACGCTCAGTA +
Preference number: 5 (lower is better)
Translates to: LRSLAALSAFSHLCR*QRPEHLPLLSRRSV
Trigger: TACTGAGCGTCTGGACAAAAGTGGAAGGTGTTCTGGCCTCTGTCAGCGGCACAAATGTGAAAATGCAGATAGTGCGGCTAAGGACCGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS GCA 90 bp ACTTGTTACAAGGCTGCTGTTGCTGTTGCTGTTACTGTTGGCTGGTaGACTGTTGGAAGCAGGCGAGATGACTGGTGCAGAGGAGAAACT +
Preference number: 5 (lower is better)
Translates to: TCYKAAVAVAVTVGW*TVGSRRDDWCRGET
Trigger: AGTTTCTCCTCTGCACCAGTCATCTCGCCTGCTTCCAACAGTGCACCAGCCAACAGTAACAGCAACAGCAACAGCAGCCTTGTAACAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS GCA 90 bp CATCAAGTTCAGACCTCGACTCGTAGGATATGCTTCCGTCATCATTaGTCACTACCCGCCCTTTGCGGCCAGTCATCTCAGCCACATTTT +
Preference number: 5 (lower is better)
Translates to: HQVQTSTRRICFRHH*SLPALCGQSSQPHF
Trigger: AAAATGTGGCTGAGATGACTGGCCGCAAAGGGCGGGTAGTGAGCAATGATGACGGAAGCATATCCTACGAGTCGAGGTCTGAACTTGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS CCA 90 bp TTGACTTGTTACAAGGCTGCTGTTGCTGTTGCTGTTACTGTTGGCTaGTGCACTGTTGGAAGCAGGCGAGATGACTGGTGCAGAGGAGAA +
Preference number: 5 (lower is better)
Translates to: LTCYKAAVAVAVTVG*CTVGSRRDDWCRGE
Trigger: TTCTCCTCTGCACCAGTCATCTCGCCTGCTTCCAACAGTGCACCAGCCAACAGTAACAGCAACAGCAACAGCAGCCTTGTAACAAGTCAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGCCAAGCCTGTCTTGGTaGGCTTTGAAGAACCAACAG +
Preference number: 5 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKPSLSW*ALKNQQ
Trigger: CTGTTGGTTCTTCAAAGCCAACCAAGACAGGCTTGG...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp GAATGGAGTTCCCTCACCCCATATTCCAAGACGGTTCATGTAGGCCATGTTGCGACAGCCAAGCCTGTCTaGGTTGGCTTTGAAGAACCA +
Preference number: 5 (lower is better)
Translates to: EWSSLTPYSKTVHVGHVATAKPV*VGFEEP
Trigger: TGGTTCTTCAAAGCCAACCAAGACAGGCTTGGCTGT...CGCAACATGGCCTACATGAACCGTCTTGGAATATGGGGTGAGGGAACTCCATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR CAA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGCAAATCTGCAGCTTGTaGAAATCGCTCTCTAGCGAT +
Preference number: 5 (lower is better)
Translates to: ELSEVLGACVALRPCRKLQICSL*KSLSSD
Trigger: ATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTTG...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGTCTCTTGGTGAACTGTaGTTACTTGGGGCTGTCAAA +
Preference number: 5 (lower is better)
Translates to: ELSEVLGACVALRPCRKLSLGEL*LLGAVK
Trigger: TTTGACAGCCCCAAGTAACAACAGTTCACCAAGAGA...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CCTCTACTCTGTTTGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTATTGGCTGGTGCACTGTaGGAAGCAGGCGAGATGACT +
Preference number: 5 (lower is better)
Translates to: PLLCLRHQLCCLFPGLSLLAGAL*EAGEMT
Trigger: AGTCATCTCGCCTGCTTCCAACAGTGCACCAGCCAA...TAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGAGCTCTGCCCAAATCTaGGTTGCTTCCTCCCAGGAC +
Preference number: 5 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGSSAQI*VASSQD
Trigger: GTCCTGGGAGGAAGCAACCAAGATTTGGGCAGAGCT...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp ATCCACACACAGAACGAGGGGGCTGGCACCTTAGGACACAGAATCGTTCTCATTCTGTGGGTGATGCTGTaGCCACAGCTGTTTTTGTTG +
Preference number: 5 (lower is better)
Translates to: IHTQNEGAGTLGHRIVLILWVML*PQLFLL
Trigger: CAACAAAAACAGCTGTGGCAACAGCATCACCCACAG...AATGAGAACGATTCTGTGTCCTAAGGTGCCAGCCCCCTCGTTCTGTGTGTGGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTCTGTGGGTGATGCTGTaGCCACAGCTGTTTTTGTTG +
Preference number: 5 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPLWVML*PQLFLL
Trigger: CAACAAAAACAGCTGTGGCAACAGCATCACCCACAG...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS GCA 90 bp TCATCTGTTGCGCCCTTTCGACAGCATCTTGACTTGTTACAAGGCTaGTGTTGCTGTTGCTGTTACTGTTGGCTGGTGCACTGTTGGAAG +
Preference number: 5 (lower is better)
Translates to: SSVAPFRQHLDLLQG*CCCCCYCWLVHCWK
Trigger: CTTCCAACAGTGCACCAGCCAACAGTAACAGCAACAGCAACAGCAGCCTTGTAACAAGTCAAGATGCTGTCGAAAGGGCGCAACAGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS CCA 90 bp GTAAATCCTTTAGCTGAACCTGGTCTTTTGAAGGAGCAGCGGGCATaGCATTTCGTACTGCTGGTGCTGAAACTGAAGGGCGTGTGTTTG +
Preference number: 5 (lower is better)
Translates to: VNPLAEPGLLKEQRA*HFVLLVLKLKGVCL
Trigger: CAAACACACGCCCTTCAGTTTCAGCACCAGCAGTACGAAATGCCATGCCCGCTGCTCCTTCAAAAGACCAGGTTCAGCTAAAGGATTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000196329.5
ENSMUST00000196644.5
ENSMUST00000196711.5
ENSMUST00000198420.5
ENSMUST00000199004.5
ENSMUST00000199808.5
ENSMUST00000200474.5
CDS-3UTR CAA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGCATCGGCTCTGGCTCTaGTTTGACAGGAACTGCTGC +
Preference number: 5 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKHRLWL*FDRNCC
Trigger: GCAGCAGTTCCTGTCAAACAAGAGCCAGAGCCGATG...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACGCGATAACCCACAGCTaGACTGCTTTGTTATACATT +
Preference number: 5 (lower is better)
Translates to: QRLGKGGPILFSGATKGDAITHS*TALLYI
Trigger: AATGTATAACAAAGCAGTCAAGCTGTGGGTTATCGC...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAAGGCTGCTGTTGCTGTaGCTGTTACTGTTGGCTGGT +
Preference number: 5 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTRLLLL*LLLLAG
Trigger: ACCAGCCAACAGTAACAGCAACAGCAACAGCAGCCT...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTCCTTTCGACAGCATCTaGACTTGTTACAAGGCTGCT +
Preference number: 5 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPPFDSI*TCYKAA
Trigger: AGCAGCCTTGTAACAAGTCAAGATGCTGTCGAAAGG...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACACTGCCCAAATCTTGGTaGCTTCCTCCCAGGACATTC +
Preference number: 5 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTLPKSW*LPPRTF
Trigger: GAATGTCCTGGGAGGAAGCAACCAAGATTTGGGCAG...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAAGCTCTGCCCAAATCTaGGTTGCTTCCTCCCAGGAC +
Preference number: 5 (lower is better)
Translates to: PLHLLSNASHSGPSANMESSAQI*VASSQD
Trigger: GTCCTGGGAGGAAGCAACCAAGATTTGGGCAGAGCT...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGCCTAAACTTGCTTTTTaGCAATTGCCACGCCAGTAT +
Preference number: 5 (lower is better)
Translates to: ELSEVLGACVALRPCRKLPKLAF*QLPRQY
Trigger: ATACTGGCGTGGCAATTGCAAAAAAGCAAGTTTAGG...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS GCA 90 bp CTTTTGTCCAGACGCTCAGTACTGAGCCACACAGTACATAGTACGTaGGGCAGCGGAGACCAATCTCACATACCAATCCTAAACTTGCTT +
Preference number: 5 (lower is better)
Translates to: LLSRRSVLSHTVHST*GSGDQSHIPILNLL
Trigger: AAGCAAGTTTAGGATTGGTATGTGAGATTGGTCTCCGCTGCCGCACGTACTATGTACTGTGTGGCTCAGTACTGAGCGTCTGGACAAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AAAGCTACAAATGAACCTGAATGCATGGCACGCAACCCTTCACTTCATGCTGTACATCGGCTCTGGCTCTaGTTTGACAGGAACTGCTGC +
Preference number: 5 (lower is better)
Translates to: KATNEPECMARNPSLHAVHRLWL*FDRNCC
Trigger: GCAGCAGTTCCTGTCAAACAAGAGCCAGAGCCGATG...TACAGCATGAAGTGAAGGGTTGCGTGCCATGCATTCAGGTTCATTTGTAGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACAAACAACTCTGGCTTTaGGCAATTTGTTCTGAAGCT +
Preference number: 5 (lower is better)
Translates to: QRLGKGGPILFSGATKGDKQLWL*AICSEA
Trigger: AGCTTCAGAACAAATTGCCAAAAGCCAGAGTTGTTT...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTACCACCCTTTTCACTTaGGATGCTATACACAGGTAC +
Preference number: 5 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPTTLFT*DAIHRY
Trigger: GTACCTGTGTATAGCATCCAAAGTGAAAAGGGTGGT...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACTACAAGGACTATCTCTaGGTGAACTGTTGTTACTTG +
Preference number: 5 (lower is better)
Translates to: QRLGKGGPILFSGATKGDYKDYL*VNCCYL
Trigger: CAAGTAACAACAGTTCACCAAGAGATAGTCCTTGTA...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACACTTTTCGTGCTTTTTaGGCTTCTCGAGTGATTTCT +
Preference number: 5 (lower is better)
Translates to: QRLGKGGPILFSGATKGDTFRAF*ASRVIS
Trigger: AGAAATCACTCGAGAAGCCAAAAAAGCACGAAAAGT...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTTCATCTCTGAAGGGATaGAAATCGTCATCATCCCCA +
Preference number: 5 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPSSLKG*KSSSSP
Trigger: TGGGGATGATGACGATTTCAATCCCTTCAGAGATGA...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTCTGTTGCTGTTACTGTaGGCTGGTGCACTGTTGGAA +
Preference number: 5 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFLLLLL*AGALLE
Trigger: TTCCAACAGTGCACCAGCCAACAGTAACAGCAACAG...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGGGAGTTAGAAACTTCTaGACATCACTCTTCCTCACC +
Preference number: 5 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKGVRNF*TSLFLT
Trigger: GGTGAGGAAGAGTGATGTCAAGAAGTTTCTAACTCC...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGGAACACCTTCCACTTTaGTCCAGACGCTCAGTACTG +
Preference number: 5 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGEHLPL*SRRSVL
Trigger: CAGTACTGAGCGTCTGGACAAAAGTGGAAGGTGTTC...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTGAACACCTTCCACTTTaGTCCAGACGCTCAGTACTG +
Preference number: 5 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFEHLPL*SRRSVL
Trigger: CAGTACTGAGCGTCTGGACAAAAGTGGAAGGTGTTC...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGGAGACTGGTCTGAAGTaGACAGGAGATTTACAAGAG +
Preference number: 5 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKETGLK*TGDLQE
Trigger: CTCTTGTAAATCTCCTGTCAACTTCAGACCAGTCTC...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS TCA 90 bp TCAAGCAGGTCTTTCTTCATCTGTTGCGCCCTTTCGACAGCATCTTaGCTTGTTACAAGGCTGCTGTTGCTGTTGCTGTTACTGTTGGCT +
Preference number: 5 (lower is better)
Translates to: SSRSFFICCALSTAS*LVTRLLLLLLLLLA
Trigger: AGCCAACAGTAACAGCAACAGCAACAGCAGCCTTGTAACAAGTCAAGATGCTGTCGAAAGGGCGCAACAGATGAAGAAAGACCTGCTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAACAGCCAAGCCTGTCTaGGTTGGCTTTGAAGAACCA +
Preference number: 5 (lower is better)
Translates to: PLHLLSNASHSGPSANMETAKPV*VGFEEP
Trigger: TGGTTCTTCAAAGCCAACCAAGACAGGCTTGGCTGT...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGACAGCCAAGCCTGTCTaGGTTGGCTTTGAAGAACCA +
Preference number: 5 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKTAKPV*VGFEEP
Trigger: TGGTTCTTCAAAGCCAACCAAGACAGGCTTGGCTGT...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp GAGTTAAGTGAGGTCCTGGGTGCATGTGTGGCACTCAGACCCTGCAGGAAACTGCATTTTCACATAGCTTaGAGAAAGAAGAACTTCCTC +
Preference number: 5 (lower is better)
Translates to: ELSEVLGACVALRPCRKLHFHIA*RKKNFL
Trigger: GAGGAAGTTCTTCTTTCTCAAAGCTATGTGAAAATG...CAGTTTCCTGCAGGGTCTGAGTGCCACACATGCACCCAGGACCTCACTTAACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp ATCCACACACAGAACGAGGGGGCTGGCACCTTAGGACACAGAATCGTTCTCATTGCGATAACCCACAGCTaGACTGCTTTGTTATACATT +
Preference number: 5 (lower is better)
Translates to: IHTQNEGAGTLGHRIVLIAITHS*TALLYI
Trigger: AATGTATAACAAAGCAGTCAAGCTGTGGGTTATCGC...AATGAGAACGATTCTGTGTCCTAAGGTGCCAGCCCCCTCGTTCTGTGTGTGGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTGACTGCAATACCCCTTaGGCAGTTGAAACAAAATCA +
Preference number: 5 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPDCNTP*AVETKS
Trigger: TGATTTTGTTTCAACTGCCAAAGGGGTATTGCAGTC...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp ATCCACACACAGAACGAGGGGGCTGGCACCTTAGGACACAGAATCGTTCTCATTGACTGCAATACCCCTTaGGCAGTTGAAACAAAATCA +
Preference number: 5 (lower is better)
Translates to: IHTQNEGAGTLGHRIVLIDCNTP*AVETKS
Trigger: TGATTTTGTTTCAACTGCCAAAGGGGTATTGCAGTC...AATGAGAACGATTCTGTGTCCTAAGGTGCCAGCCCCCTCGTTCTGTGTGTGGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAACTGTTGCTGTTACTGTaGGCTGGTGCACTGTTGGAA +
Preference number: 5 (lower is better)
Translates to: PLHLLSNASHSGPSANMELLLLL*AGALLE
Trigger: TTCCAACAGTGCACCAGCCAACAGTAACAGCAACAG...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGGTTACAAGGCTGCTGTaGCTGTTGCTGTTACTGTTG +
Preference number: 5 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGVTRLL*LLLLLL
Trigger: CAACAGTAACAGCAACAGCAACAGCAGCCTTGTAAC...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACACCTTTCGACAGCATCTaGACTTGTTACAAGGCTGCT +
Preference number: 5 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTPFDSI*TCYKAA
Trigger: AGCAGCCTTGTAACAAGTCAAGATGCTGTCGAAAGG...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAGTGAACTCTTCGCCTTaGGTTTTTAGCTCTCCGATC +
Preference number: 5 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTVNSSP*VFSSPI
Trigger: GATCGGAGAGCTAAAAACCAAAGGCGAAGAGTTCAC...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CAGAGGCTAGGTAAAGGAGGACCCATTCTATTCTCAGGGGCCACAAAGGGGGACTACTTGTTGTCAAAGTaGAATCTGCTCAGATCTCTA +
Preference number: 5 (lower is better)
Translates to: QRLGKGGPILFSGATKGDYLLSK*NLLRSL
Trigger: TAGAGATCTGAGCAGATTCAACTTTGACAACAAGTA...GTCCCCCTTTGTGGCCCCTGAGAATAGAATGGGTCCTCCTTTACCTAGCCTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS TCA 90 bp ACTCTACATGGCCGGAGGTTGAATACCCTGGAGTTAGAAACTTCTTaGCATCACTCTTCCTCACCTTCTCATCTCCAGAACCCAGATCTA +
Preference number: 5 (lower is better)
Translates to: TLHGRRLNTLELETS*HHSSSPSHLQNPDL
Trigger: TAGATCTGGGTTCTGGAGATGAGAAGGTGAGGAAGAGTGATGTCAAGAAGTTTCTAACTCCAGGGTATTCAACCTCCGGCCATGTAGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACATGTCAAAGTGATGGTTaGCCTATTCGTTGTTGCAGG +
Preference number: 5 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTCQSDG*PIRCCR
Trigger: CCTGCAACAACGAATAGGCAAACCATCACTTTGACA...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACATCAGAGATGGAGGTTTaGTACCAAACATCAGGAGGA +
Preference number: 5 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTSEMEV*YQTSGG
Trigger: TCCTCCTGATGTTTGGTACAAAACCTCCATCTCTGA...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTTCAGAGATGGAGGTTTaGTACCAAACATCAGGAGGA +
Preference number: 5 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFSEMEV*YQTSGG
Trigger: TCCTCCTGATGTTTGGTACAAAACCTCCATCTCTGA...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp TCCTCTAAGCTTCATATCCATAGCAACGATTTCCATGGCACCAACACCTCTGCGTCAGAGATGGAGGTTTaGTACCAAACATCAGGAGGA +
Preference number: 5 (lower is better)
Translates to: SSKLHIHSNDFHGTNTSASEMEV*YQTSGG
Trigger: TCCTCCTGATGTTTGGTACAAAACCTCCATCTCTGA...CGCAGAGGTGTTGGTGCCATGGAAATCGTTGCTATGGATATGAAGCTTAGAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR CAA 90 bp AAAGCTACAAATGAACCTGAATGCATGGCACGCAACCCTTCACTTCATGCTGTACCAAGCCTGTCTTGGTaGGCTTTGAAGAACCAACAG +
Preference number: 5 (lower is better)
Translates to: KATNEPECMARNPSLHAVPSLSW*ALKNQQ
Trigger: CTGTTGGTTCTTCAAAGCCAACCAAGACAGGCTTGG...TACAGCATGAAGTGAAGGGTTGCGTGCCATGCATTCAGGTTCATTTGTAGCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AGTAAAGCTCAGCTGCCGTGCAATGTACATTCCTCTAAGCTTCATATCCATAGCCCAAGCCTGTCTTGGTaGGCTTTGAAGAACCAACAG +
Preference number: 5 (lower is better)
Translates to: SKAQLPCNVHSSKLHIHSPSLSW*ALKNQQ
Trigger: CTGTTGGTTCTTCAAAGCCAACCAAGACAGGCTTGG...GCTATGGATATGAAGCTTAGAGGAATGTACATTGCACGGCAGCTGAGCTTTACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR CAA 90 bp AGGGGAGGAACATGGCCTTCCTCTCCAGCAAGTATATTTGAGCAGCTGGAACCTTCTGCGTTCCACAGCTaGGATAAAATCACTAAATTC +
Preference number: 5 (lower is better)
Translates to: RGGTWPSSPASIFEQLEPSAFHS*DKITKF
Trigger: GAATTTAGTGATTTTATCCAAGCTGTGGAACGCAGA...AGGTTCCAGCTGCTCAAATATACTTGCTGGAGAGGAAGGCCATGTTCCTCCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp ATCCACACACAGAACGAGGGGGCTGGCACCTTAGGACACAGAATCGTTCTCATTAGAACTTCCTCAATTTaGAAGGTCACTCCAGTAAAG +
Preference number: 5 (lower is better)
Translates to: IHTQNEGAGTLGHRIVLIRTSSI*KVTPVK
Trigger: CTTTACTGGAGTGACCTTCAAAATTGAGGAAGTTCT...AATGAGAACGATTCTGTGTCCTAAGGTGCCAGCCCCCTCGTTCTGTGTGTGGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CCTCTACTCTGTTTGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTACAAATCTGCAGCTTGTaGAAATCGCTCTCTAGCGAT +
Preference number: 5 (lower is better)
Translates to: PLLCLRHQLCCLFPGLSLQICSL*KSLSSD
Trigger: ATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTTG...TAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CCTCTACTCTGTTTGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTAGTGAACTGTTGTTACTaGGGGCTGTCAAATCGATTC +
Preference number: 5 (lower is better)
Translates to: PLLCLRHQLCCLFPGLSLVNCCY*GLSNRF
Trigger: GAATCGATTTGACAGCCCCAAGTAACAACAGTTCAC...TAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGGTGAACTGTTGTTACTaGGGGCTGTCAAATCGATTC +
Preference number: 5 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGVNCCY*GLSNRF
Trigger: GAATCGATTTGACAGCCCCAAGTAACAACAGTTCAC...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CCTCTACTCTGTTTGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTATCTCTTGGTGAACTGTaGTTACTTGGGGCTGTCAAA +
Preference number: 5 (lower is better)
Translates to: PLLCLRHQLCCLFPGLSLSLGEL*LLGAVK
Trigger: TTTGACAGCCCCAAGTAACAACAGTTCACCAAGAGA...TAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CCTCTACTCTGTTTGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTATCATCTCTGAAGGGATaGAAATCGTCATCATCCCCA +
Preference number: 5 (lower is better)
Translates to: PLLCLRHQLCCLFPGLSLSSLKG*KSSSSP
Trigger: TGGGGATGATGACGATTTCAATCCCTTCAGAGATGA...TAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGGTTACAAGGCTGCTGTaGCTGTTGCTGTTACTGTTG +
Preference number: 5 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKVTRLL*LLLLLL
Trigger: CAACAGTAACAGCAACAGCAACAGCAGCCTTGTAAC...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp ATCCACACACAGAACGAGGGGGCTGGCACCTTAGGACACAGAATCGTTCTCATTCATTTTCACATAGCTTaGAGAAAGAAGAACTTCCTC +
Preference number: 5 (lower is better)
Translates to: IHTQNEGAGTLGHRIVLIHFHIA*RKKNFL
Trigger: GAGGAAGTTCTTCTTTCTCAAAGCTATGTGAAAATG...AATGAGAACGATTCTGTGTCCTAAGGTGCCAGCCCCCTCGTTCTGTGTGTGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGACCACCCTTTTCACTTaGGATGCTATACACAGGTAC +
Preference number: 5 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKTTLFT*DAIHRY
Trigger: GTACCTGTGTATAGCATCCAAAGTGAAAAGGGTGGT...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGGGAGTTAGAAACTTCTaGACATCACTCTTCCTCACC +
Preference number: 5 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKGVRNF*TSLFLT
Trigger: GGTGAGGAAGAGTGATGTCAAGAAGTTTCTAACTCC...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AGCTGCAGCCATGACATGGAATGCTTGGTTCACTTCAGCACTAGAGGGCCAAAGGTTGCTTCCCAGTGTTaGGTCGGTAAATTAAAAATA +
Preference number: 5 (lower is better)
Translates to: SCSHDMECLVHFSTRGPKVASQC*VGKLKI
Trigger: TATTTTTAATTTACCGACCAAACACTGGGAAGCAAC...CTTTGGCCCTCTAGTGCTGAAGTGAACCAAGCATTCCATGTCATGGCTGCAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS GCA 90 bp TATCCATATCCTCGCCACTTCTTTATTAGAAGACTCCTTCTTAACTaGACCATTACTGACATCAGTAGCTGCAGTTGCAACTGGCTGAGC +
Preference number: 5 (lower is better)
Translates to: YPYPRHFFIRRLLLN*TITDISSCSCNWLS
Trigger: GCTCAGCCAGTTGCAACTGCAGCTACTGATGTCAGTAATGGTGCAGTTAAGAAGGAGTCTTCTAATAAAGAAGTGGCGAGGATATGGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000196329.5
ENSMUST00000196644.5
ENSMUST00000196711.5
ENSMUST00000199004.5
ENSMUST00000199808.5
ENSMUST00000200474.5
CDS-3UTR CAA 90 bp GAGCCCGTGTATAAAATACCCTTTGCACAAGGAGGTAGAACCCGGCACAAGTTTTCTGCGTTCCACAGCTaGGATAAAATCACTAAATTC +
Preference number: 5 (lower is better)
Translates to: EPVYKIPFAQGGRTRHKFSAFHS*DKITKF
Trigger: GAATTTAGTGATTTTATCCAAGCTGTGGAACGCAGA...AAACTTGTGCCGGGTTCTACCTCCTTGTGCAAAGGGTATTTTATACACGGGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CCTCTACTCTGTTTGCGCCATCAGCTTTGCTGCCTTTTTCCAGGTTTGTCCTTAAGAACTTCCTCAATTTaGAAGGTCACTCCAGTAAAG +
Preference number: 5 (lower is better)
Translates to: PLLCLRHQLCCLFPGLSLRTSSI*KVTPVK
Trigger: CTTTACTGGAGTGACCTTCAAAATTGAGGAAGTTCT...TAAGGACAAACCTGGAAAAAGGCAGCAAAGCTGATGGCGCAAACAGAGTAGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAAATCAAATCTGCAGCTaGTTGAAATCGCTCTCTAGC +
Preference number: 5 (lower is better)
Translates to: PLHLLSNASHSGPSANMENQICS*LKSLSS
Trigger: GCTAGAGAGCGATTTCAACAAGCTGCAGATTTGATT...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGCCTAAACTTGCTTTTTaGCAATTGCCACGCCAGTAT +
Preference number: 5 (lower is better)
Translates to: LFTKKTREILQVLLWKHQPKLAF*QLPRQY
Trigger: ATACTGGCGTGGCAATTGCAAAAAAGCAAGTTTAGG...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CATTCAGATGGACAGTCCTATGCAGCGCAGCAGTACAAAAGGGAACTGAAGACAACACTCCCATTGTGTTaGGAAGAAATCTTACCATAT +
Preference number: 5 (lower is better)
Translates to: HSDGQSYAAQQYKRELKTTLPLC*EEILPY
Trigger: ATATGGTAAGATTTCTTCCAAACACAATGGGAGTGT...TGTCTTCAGTTCCCTTTTGTACTGCTGCGCTGCATAGGACTGTCCATCTGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp TTCCAAGACGGTTCATGTAGGCCATGTTGCGTGGTTCAGAAGCACCTAGTAAACACACTCCCATTGTGTTaGGAAGAAATCTTACCATAT +
Preference number: 5 (lower is better)
Translates to: FQDGSCRPCCVVQKHLVNTLPLC*EEILPY
Trigger: ATATGGTAAGATTTCTTCCAAACACAATGGGAGTGT...GTTTACTAGGTGCTTCTGAACCACGCAACATGGCCTACATGAACCGTCTTGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR CAA 90 bp AGAACTTCCTCAATTTTGAAGGTCACTCCAGTAAAGCTCAGCTGCCGTGCAATGAAACAACTCTGGCTTTaGGCAATTTGTTCTGAAGCT +
Preference number: 5 (lower is better)
Translates to: RTSSILKVTPVKLSCRAMKQLWL*AICSEA
Trigger: AGCTTCAGAACAAATTGCCAAAAGCCAGAGTTGTTT...CATTGCACGGCAGCTGAGCTTTACTGGAGTGACCTTCAAAATTGAGGAAGTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS-3UTR CAA 90 bp AAAGCTACAAATGAACCTGAATGCATGGCACGCAACCCTTCACTTCATGCTGTAAATCAAATCTGCAGCTaGTTGAAATCGCTCTCTAGC +
Preference number: 5 (lower is better)
Translates to: KATNEPECMARNPSLHAVNQICS*LKSLSS
Trigger: GCTAGAGAGCGATTTCAACAAGCTGCAGATTTGATT...TACAGCATGAAGTGAAGGGTTGCGTGCCATGCATTCAGGTTCATTTGTAGCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CTGTTCACTAAGAAGACTAGAGAAATCCTGCAGGTGCTGCTTTGGAAACACCAGTACAAGGACTATCTCTaGGTGAACTGTTGTTACTTG +
Preference number: 5 (lower is better)
Translates to: LFTKKTREILQVLLWKHQYKDYL*VNCCYL
Trigger: CAAGTAACAACAGTTCACCAAGAGATAGTCCTTGTA...CTGGTGTTTCCAAAGCAGCACCTGCAGGATTTCTCTAGTCTTCTTAGTGAACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AAAAGGCTACAGCCAAACTGTGGCTCCAAAATGCTTAATTCCTCTGGAGCTGGGGCATTTCTTCCATACTaGTTGTCAAAGTTGAATCTG +
Preference number: 5 (lower is better)
Translates to: KRLQPNCGSKMLNSSGAGAFLPY*LSKLNL
Trigger: CAGATTCAACTTTGACAACAAGTATGGAAGAAATGC...CCCAGCTCCAGAGGAATTAAGCATTTTGGAGCCACAGTTTGGCTGTAGCCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS GCA 90 bp ATACTTGTTGTCAAAGTTGAATCTGCTCAGATCTCTAGATTCTGTTaGTCTTCTGTCACCATGTGTAAGTGCCCCCAAACTCTCAAGTCT +
Preference number: 5 (lower is better)
Translates to: ILVVKVESAQISRFC*SSVTMCKCPQTLKS
Trigger: AGACTTGAGAGTTTGGGGGCACTTACACATGGTGACAGAAGAGCAACAGAATCTAGAGATCTGAGCAGATTCAACTTTGACAACAAGTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp ATCAATCAAATCTGCAGCTTGTTGAAATCGCTCTCTAGCGATAACCCACTGAAATGTCAAAGTGATGGTTaGCCTATTCGTTGTTGCAGG +
Preference number: 5 (lower is better)
Translates to: INQICSLLKSLSSDNPLKCQSDG*PIRCCR
Trigger: CCTGCAACAACGAATAGGCAAACCATCACTTTGACA...TTTCAGTGGGTTATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTTGATTGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199004.5
CDS-3UTR CAA 90 bp TATTCAAGTTACTGGGTAACGATGACAACAACATACAGCAGAAGCCAAGTGTTTGTGAACTCTTCGCCTTaGGTTTTTAGCTCTCCGATC +
Preference number: 5 (lower is better)
Translates to: YSSYWVTMTTTYSRSQVFVNSSP*VFSSPI
Trigger: GATCGGAGAGCTAAAAACCAAAGGCGAAGAGTTCAC...AAACACTTGGCTTCTGCTGTATGTTGTTGTCATCGTTACCCAGTAACTTGAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp TGTCAGATCAAGAAGGAAGCCCAGAGCCCGTGTATAAAATACCCTTTGCACAAGGCATTTCTTCCATACTaGTTGTCAAAGTTGAATCTG +
Preference number: 5 (lower is better)
Translates to: CQIKKEAQSPCIKYPLHKAFLPY*LSKLNL
Trigger: CAGATTCAACTTTGACAACAAGTATGGAAGAAATGC...CTTGTGCAAAGGGTATTTTATACACGGGCTCTGGGCTTCCTTCTTGATCTGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp CCTCTTCACCTGCTTTCAAATGCAAGTCACAGTGGCCCTAGTGCTAATATGGAAGTTGCTTCCCAGTGTTaGGTCGGTAAATTAAAAATA +
Preference number: 5 (lower is better)
Translates to: PLHLLSNASHSGPSANMEVASQC*VGKLKI
Trigger: TATTTTTAATTTACCGACCAAACACTGGGAAGCAAC...TTCCATATTAGCACTAGGGCCACTGTGACTTGCATTTGAAAGCAGGTGAAGAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS GCA 90 bp CGTGTGTTTGCAGTGGTCTGGATGAACTTTGTCAAAGTGATGGTTTaGCTATTCGTTGTTGCAGGTGGTGTTTTAGTCATTACAATTGTA +
Preference number: 5 (lower is better)
Translates to: RVFAVVWMNFVKVMV*LFVVAGGVLVITIV
Trigger: TACAATTGTAATGACTAAAACACCACCTGCAACAACGAATAGGCAAACCATCACTTTGACAAAGTTCATCCAGACCACTGCAAACACACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000196329.5
ENSMUST00000196644.5
ENSMUST00000196711.5
ENSMUST00000198420.5
ENSMUST00000199004.5
ENSMUST00000199808.5
ENSMUST00000200474.5
CDS-3UTR CAA 90 bp AAAGCTACAAATGAACCTGAATGCATGGCACGCAACCCTTCACTTCATGCTGTAACACTCCCATTGTGTTaGGAAGAAATCTTACCATAT +
Preference number: 5 (lower is better)
Translates to: KATNEPECMARNPSLHAVTLPLC*EEILPY
Trigger: ATATGGTAAGATTTCTTCCAAACACAATGGGAGTGT...TACAGCATGAAGTGAAGGGTTGCGTGCCATGCATTCAGGTTCATTTGTAGCTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp AAAGCTACAAATGAACCTGAATGCATGGCACGCAACCCTTCACTTCATGCTGTATACTTGTTGTCAAAGTaGAATCTGCTCAGATCTCTA +
Preference number: 5 (lower is better)
Translates to: KATNEPECMARNPSLHAVYLLSK*NLLRSL
Trigger: TAGAGATCTGAGCAGATTCAACTTTGACAACAAGTA...TACAGCATGAAGTGAAGGGTTGCGTGCCATGCATTCAGGTTCATTTGTAGCTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp TATTCAAGTTACTGGGTAACGATGACAACAACATACAGCAGAAGCCAAGTGTTTGAGACTGGTCTGAAGTaGACAGGAGATTTACAAGAG +
Preference number: 5 (lower is better)
Translates to: YSSYWVTMTTTYSRSQVFETGLK*TGDLQE
Trigger: CTCTTGTAAATCTCCTGTCAACTTCAGACCAGTCTC...AAACACTTGGCTTCTGCTGTATGTTGTTGTCATCGTTACCCAGTAACTTGAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS TCA 90 bp TTGCCGAACGTCTTTAAAGAATTCTCCAGGGTAGTCTGGAGGTGGTaGTACCATAGGAGAATCCAAGTTTACAATGGATTTCATAACAAT +
Preference number: 5 (lower is better)
Translates to: LPNVFKEFSRVVWRW*YHRRIQVYNGFHNN
Trigger: ATTGTTATGAAATCCATTGTAAACTTGGATTCTCCTATGGTATCACCACCTCCAGACTACCCTGGAGAATTCTTTAAAGACGTTCGGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS TCA 90 bp TTCATGAGTTCGTTTAAACTATTATTTTTGAGTAAATCCTTTAGCTaGACCTGGTCTTTTGAAGGAGCAGCGGGCATGGCATTTCGTACT +
Preference number: 5 (lower is better)
Translates to: FMSSFKLLFLSKSFS*TWSFEGAAGMAFRT
Trigger: AGTACGAAATGCCATGCCCGCTGCTCCTTCAAAAGACCAGGTTCAGCTAAAGGATTTACTCAAAAATAATAGTTTAAACGAACTCATGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000196329.5
ENSMUST00000196644.5
ENSMUST00000196711.5
ENSMUST00000198420.5
ENSMUST00000199004.5
ENSMUST00000199808.5
ENSMUST00000200474.5
CDS-3UTR CAA 90 bp TATTCAAGTTACTGGGTAACGATGACAACAACATACAGCAGAAGCCAAGTGTTTAAACAACTCTGGCTTTaGGCAATTTGTTCTGAAGCT +
Preference number: 5 (lower is better)
Translates to: YSSYWVTMTTTYSRSQVFKQLWL*AICSEA
Trigger: AGCTTCAGAACAAATTGCCAAAAGCCAGAGTTGTTT...AAACACTTGGCTTCTGCTGTATGTTGTTGTCATCGTTACCCAGTAACTTGAATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS-3UTR CAA 90 bp TATTCAAGTTACTGGGTAACGATGACAACAACATACAGCAGAAGCCAAGTGTTTACTTTTCGTGCTTTTTaGGCTTCTCGAGTGATTTCT +
Preference number: 5 (lower is better)
Translates to: YSSYWVTMTTTYSRSQVFTFRAF*ASRVIS
Trigger: AGAAATCACTCGAGAAGCCAAAAAAGCACGAAAAGT...AAACACTTGGCTTCTGCTGTATGTTGTTGTCATCGTTACCCAGTAACTTGAATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065263.12
ENSMUST00000199808.5
CDS CCA 90 bp TGTTGCAGGTGGTGTTTTAGTCATTACAATTGTAGATCCCAAAGTTaGAAGTTGATTTATTTGATTCAGCACAAACGTTGTAGTGGATGG +
Preference number: 5 (lower is better)
Translates to: CCRWCFSHYNCRSQS*KLIYLIQHKRCSGW
Trigger: CCATCCACTACAACGTTTGTGCTGAATCAAATAAATCAACTTCCAACTTTGGGATCTACAATTGTAATGACTAAAACACCACCTGCAACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000196329.5
ENSMUST00000196644.5
ENSMUST00000196711.5
ENSMUST00000198420.5
ENSMUST00000199004.5
ENSMUST00000199808.5
ENSMUST00000200474.5
CDS TCA 72 bp AGCACAAACGTTGTAGTGGATGGAGGCTGCTGCTGTTaGACTGAAGGGGGCGTAGGGGTGGCAAGGCCAGCA +
Preference number: 6 (lower is better)
Translates to: STNVVVDGGCCC*TEGGVGVARPA
Trigger: TGCTGGCCTTGCCACCCCTACGCCCCCTTCAGTTCAACAGCAGCAGCCTCCATCCACTACAACGTTTGTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000196329.5
ENSMUST00000196711.5
CDS TCA 72 bp CACAAACGTTGTAGTGGATGGAGGCTGCTGTTGAACTaGAGGGGGCGTAGGGGTGGCAAGGCCAGCATCTCC +
Preference number: 6 (lower is better)
Translates to: HKRCSGWRLLLN*RGRRGGKASIS
Trigger: GGAGATGCTGGCCTTGCCACCCCTACGCCCCCTTCAGTTCAACAGCAGCCTCCATCCACTACAACGTTTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000198420.5
ENSMUST00000200474.5
CDS TCA 72 bp TTCAGCACAAACGTTGTAGTGGATGGAGGCTGCTGTTaGACTGAAGGGGGCGTAGGGGTGGCAAGGCCAGCA +
Preference number: 6 (lower is better)
Translates to: FSTNVVVDGGCC*TEGGVGVARPA
Trigger: TGCTGGCCTTGCCACCCCTACGCCCCCTTCAGTTCAACAGCAGCCTCCATCCACTACAACGTTTGTGCTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000198420.5
ENSMUST00000200474.5
CDS CAA 90 bp ACAAGGCTGCTGTTGCTGTTGCTGTTACTGTTGGCTGGTGCACTGTaGGAAGCAGGCGAGATGACTGGTGCAGAGGAGAAACTAGGCCGC +
Preference number: 6 (lower is better)
Translates to: TRLLLLLLLLLAGAL*EAGEMTGAEEKLGR
Trigger: GCGGCCTAGTTTCTCCTCTGCACCAGTCATCTCGCCTGCTTCCAACAGTGCACCAGCCAACAGTAACAGCAACAGCAACAGCAGCCTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS TCA 72 bp AACCCTAGTTCTAATGCACTAAGTGGCACCGACTGTTaGACTGAAGGGGGCGTAGGGGTGGCAAGGCCAGCA +
Preference number: 6 (lower is better)
Translates to: NPSSNALSGTDC*TEGGVGVARPA
Trigger: TGCTGGCCTTGCCACCCCTACGCCCCCTTCAGTTCAACAGTCGGTGCCACTTAGTGCATTAGAACTAGGGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000196644.5
ENSMUST00000197777.2
ENSMUST00000199004.5
ENSMUST00000199808.5
CDS GCA 72 bp CAGACCTCGACTCGTAGGATATGCTTCCGTCATCATTaGTCACTACCCGCCCTTTGCGGCCAGTCATCTCAG +
Preference number: 6 (lower is better)
Translates to: QTSTRRICFRHH*SLPALCGQSSQ
Trigger: CTGAGATGACTGGCCGCAAAGGGCGGGTAGTGAGCAATGATGACGGAAGCATATCCTACGAGTCGAGGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS TCA 72 bp CAGAACACCTTCCACTTTTGTCCAGACGCTCAGTACTaGGCCACACAGTACATAGTACGTGCGGCAGCGGAG +
Preference number: 6 (lower is better)
Translates to: QNTFHFCPDAQY*ATQYIVRAAAE
Trigger: CTCCGCTGCCGCACGTACTATGTACTGTGTGGCTCAGTACTGAGCGTCTGGACAAAAGTGGAAGGTGTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS GCA 72 bp ATCCGCTGCCCATCTTCGGTCCTTAGCCGCACTATCTaGATTTTCACATTTGTGCCGCTGACAGAGGCCAGA +
Preference number: 6 (lower is better)
Translates to: IRCPSSVLSRTI*IFTFVPLTEAR
Trigger: TCTGGCCTCTGTCAGCGGCACAAATGTGAAAATGCAGATAGTGCGGCTAAGGACCGAAGATGGGCAGCGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS GCA 72 bp GCGCCCTTTCGACAGCATCTTGACTTGTTACAAGGCTaGTGTTGCTGTTGCTGTTACTGTTGGCTGGTGCAC +
Preference number: 6 (lower is better)
Translates to: APFRQHLDLLQG*CCCCCYCWLVH
Trigger: GTGCACCAGCCAACAGTAACAGCAACAGCAACAGCAGCCTTGTAACAAGTCAAGATGCTGTCGAAAGGGCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS GCA 72 bp ATATGCTTCCGTCATCATTGCTCACTACCCGCCCTTTaGGGCCAGTCATCTCAGCCACATTTTCAGGACCAC +
Preference number: 6 (lower is better)
Translates to: ICFRHHCSLPAL*GQSSQPHFQDH
Trigger: GTGGTCCTGAAAATGTGGCTGAGATGACTGGCCGCAAAGGGCGGGTAGTGAGCAATGATGACGGAAGCATAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS GCA 72 bp GCAATTGCCACGCCAGTATGCGTGAGTACAGGTGTCTaGAGAGGAGTTATACTGATCCAGCCAGTGTACCAG +
Preference number: 6 (lower is better)
Translates to: AIATPVCVSTGV*RGVILIQPVYQ
Trigger: CTGGTACACTGGCTGGATCAGTATAACTCCTCTGCAGACACCTGTACTCACGCATACTGGCGTGGCAATTGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS CCA 72 bp TTAGCTGAACCTGGTCTTTTGAAGGAGCAGCGGGCATaGCATTTCGTACTGCTGGTGCTGAAACTGAAGGGC +
Preference number: 6 (lower is better)
Translates to: LAEPGLLKEQRA*HFVLLVLKLKG
Trigger: GCCCTTCAGTTTCAGCACCAGCAGTACGAAATGCCATGCCCGCTGCTCCTTCAAAAGACCAGGTTCAGCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000196329.5
ENSMUST00000196644.5
ENSMUST00000196711.5
ENSMUST00000198420.5
ENSMUST00000199004.5
ENSMUST00000199808.5
ENSMUST00000200474.5
CDS CAA 72 bp CTGTTGCTGTTGCTGTTACTGTTGGCTGGTGCACTGTaGGAAGCAGGCGAGATGACTGGTGCAGAGGAGAAA +
Preference number: 6 (lower is better)
Translates to: LLLLLLLLAGAL*EAGEMTGAEEK
Trigger: TTTCTCCTCTGCACCAGTCATCTCGCCTGCTTCCAACAGTGCACCAGCCAACAGTAACAGCAACAGCAACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS CAA 72 bp GATATGCTTCCGTCATCATTGCTCACTACCCGCCCTTaGCGGCCAGTCATCTCAGCCACATTTTCAGGACCA +
Preference number: 6 (lower is better)
Translates to: DMLPSSLLTTRP*RPVISATFSGP
Trigger: TGGTCCTGAAAATGTGGCTGAGATGACTGGCCGCAAAGGGCGGGTAGTGAGCAATGATGACGGAAGCATATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS CAA 72 bp GTTGCTCAAGTTGGTGATGCTCTGTGGGTGATGCTGTaGCCACAGCTGTTTTTGTTGCACTGCGAGCTGCTG +
Preference number: 6 (lower is better)
Translates to: VAQVGDALWVML*PQLFLLHCELL
Trigger: CAGCAGCTCGCAGTGCAACAAAAACAGCTGTGGCAACAGCATCACCCACAGAGCATCACCAACTTGAGCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS GCA 72 bp ACACACTTCCCGTTCTTGATCTCTTCCCGAGCCAGCTaGACCACCCTTTTCACTTTGGATGCTATACACAGG +
Preference number: 6 (lower is better)
Translates to: THFPFLISSRAS*TTLFTLDAIHR
Trigger: CCTGTGTATAGCATCCAAAGTGAAAAGGGTGGTGCAGCTGGCTCGGGAAGAGATCAAGAACGGGAAGTGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000196329.5
ENSMUST00000196644.5
ENSMUST00000199808.5
ENSMUST00000200474.5
CDS GCA 72 bp ATCATCTGGTCCAGTCAGCTCTGCCCAAATCTTGGTTaGTTCCTCCCAGGACATTCCCCTCTCCACACTAAT +
Preference number: 6 (lower is better)
Translates to: IIWSSQLCPNLG*FLPGHSPLHTN
Trigger: ATTAGTGTGGAGAGGGGAATGTCCTGGGAGGAAGCAACCAAGATTTGGGCAGAGCTGACTGGACCAGATGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS CAA 72 bp CTTGTTACAAGGCTGCTGTTGCTGTTGCTGTTACTGTaGGCTGGTGCACTGTTGGAAGCAGGCGAGATGACT +
Preference number: 6 (lower is better)
Translates to: LVTRLLLLLLLL*AGALLEAGEMT
Trigger: AGTCATCTCGCCTGCTTCCAACAGTGCACCAGCCAACAGTAACAGCAACAGCAACAGCAGCCTTGTAACAAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS CAA 90 bp GCAGGTCTTTCTTCATCTGTTGCGCCCTTTCGACAGCATCTTGACTaGTTACAAGGCTGCTGTTGCTGTTGCTGTTACTGTTGGCTGGTG +
Preference number: 6 (lower is better)
Translates to: AGLSSSVAPFRQHLD*LQGCCCCCCYCWLV
Trigger: CACCAGCCAACAGTAACAGCAACAGCAACAGCAGCCTTGTAACAAGTCAAGATGCTGTCGAAAGGGCGCAACAGATGAAGAAAGACCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS GCA 72 bp CTCCTTCTTAACTGCACCATTACTGACATCAGTAGCTaGAGTTGCAACTGGCTGAGCAATATTGGCGGGTGG +
Preference number: 6 (lower is better)
Translates to: LLLNCTITDISS*SCNWLSNIGGW
Trigger: CCACCCGCCAATATTGCTCAGCCAGTTGCAACTGCAGCTACTGATGTCAGTAATGGTGCAGTTAAGAAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000196329.5
ENSMUST00000196644.5
ENSMUST00000196711.5
ENSMUST00000199004.5
ENSMUST00000199808.5
ENSMUST00000200474.5
CDS TCA 72 bp GGCCGGAGGTTGAATACCCTGGAGTTAGAAACTTCTTaGCATCACTCTTCCTCACCTTCTCATCTCCAGAAC +
Preference number: 6 (lower is better)
Translates to: GRRLNTLELETS*HHSSSPSHLQN
Trigger: GTTCTGGAGATGAGAAGGTGAGGAAGAGTGATGTCAAGAAGTTTCTAACTCCAGGGTATTCAACCTCCGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS TCA 72 bp TTAGCCGCACTATCTGCATTTTCACATTTGTGCCGCTaGCAGAGGCCAGAACACCTTCCACTTTTGTCCAGA +
Preference number: 6 (lower is better)
Translates to: LAALSAFSHLCR*QRPEHLPLLSR
Trigger: TCTGGACAAAAGTGGAAGGTGTTCTGGCCTCTGTCAGCGGCACAAATGTGAAAATGCAGATAGTGCGGCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS GCA 72 bp TTTCGACAGCATCTTGACTTGTTACAAGGCTGCTGTTaGTGTTGCTGTTACTGTTGGCTGGTGCACTGTTGG +
Preference number: 6 (lower is better)
Translates to: FRQHLDLLQGCC*CCCYCWLVHCW
Trigger: CCAACAGTGCACCAGCCAACAGTAACAGCAACAGCAACAGCAGCCTTGTAACAAGTCAAGATGCTGTCGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS CAA 72 bp CTGCTTCCTGTGAGGCCACCAACTTTTCGTGCTTTTTaGGCTTCTCGAGTGATTTCTTCACCTTTCCGCTTC +
Preference number: 6 (lower is better)
Translates to: LLPVRPPTFRAF*ASRVISSPFRF
Trigger: GAAGCGGAAAGGTGAAGAAATCACTCGAGAAGCCAAAAAAGCACGAAAAGTTGGTGGCCTCACAGGAAGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000196644.5
ENSMUST00000199808.5
ENSMUST00000200474.5
CDS CAA 90 bp ATCAAGCAGGTCTTTCTTCATCTGTTGCGCCCTTTCGACAGCATCTaGACTTGTTACAAGGCTGCTGTTGCTGTTGCTGTTACTGTTGGC +
Preference number: 6 (lower is better)
Translates to: IKQVFLHLLRPFDSI*TCYKAAVAVAVTVG
Trigger: GCCAACAGTAACAGCAACAGCAACAGCAGCCTTGTAACAAGTCAAGATGCTGTCGAAAGGGCGCAACAGATGAAGAAAGACCTGCTTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS TCA 72 bp TGTTGCCACAGCTGTTTTTGTTGCACTGCGAGCTGCTaGGACTGGTCTGAAGTTGACAGGAGATTTACAAGA +
Preference number: 6 (lower is better)
Translates to: CCHSCFCCTASC*DWSEVDRRFTR
Trigger: TCTTGTAAATCTCCTGTCAACTTCAGACCAGTCTCAGCAGCTCGCAGTGCAACAAAAACAGCTGTGGCAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS CAA 72 bp TCTTCATCTGTTGCGCCCTTTCGACAGCATCTTGACTaGTTACAAGGCTGCTGTTGCTGTTGCTGTTACTGT +
Preference number: 6 (lower is better)
Translates to: SSSVAPFRQHLD*LQGCCCCCCYC
Trigger: ACAGTAACAGCAACAGCAACAGCAGCCTTGTAACAAGTCAAGATGCTGTCGAAAGGGCGCAACAGATGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS CCA 72 bp ATTCCCCTCTCCACACTAATCGTGTATAACTCTACATaGCCGGAGGTTGAATACCCTGGAGTTAGAAACTTC +
Preference number: 6 (lower is better)
Translates to: IPLSTLIVYNST*PEVEYPGVRNF
Trigger: GAAGTTTCTAACTCCAGGGTATTCAACCTCCGGCCATGTAGAGTTATACACGATTAGTGTGGAGAGGGGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS TCA 72 bp GCCCTATCAGCACTCCAAGGTAATTCTAAAGTCATGTaGACTCTTCGCCTTTGGTTTTTAGCTCTCCGATCT +
Preference number: 6 (lower is better)
Translates to: ALSALQGNSKVM*TLRLWFLALRS
Trigger: AGATCGGAGAGCTAAAAACCAAAGGCGAAGAGTTCACATGACTTTAGAATTACCTTGGAGTGCTGATAGGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS TCA 72 bp GTCACTTGGTTTGACCTGTGTGTTCTTCCAAACTGCTaGATCGCCCTATCAGCACTCCAAGGTAATTCTAAA +
Preference number: 6 (lower is better)
Translates to: VTWFDLCVLPNC*IALSALQGNSK
Trigger: TTTAGAATTACCTTGGAGTGCTGATAGGGCGATTCAGCAGTTTGGAAGAACACACAGGTCAAACCAAGTGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS GCA 72 bp CCTCGCCACTTCTTTATTAGAAGACTCCTTCTTAACTaGACCATTACTGACATCAGTAGCTGCAGTTGCAAC +
Preference number: 6 (lower is better)
Translates to: PRHFFIRRLLLN*TITDISSCSCN
Trigger: GTTGCAACTGCAGCTACTGATGTCAGTAATGGTGCAGTTAAGAAGGAGTCTTCTAATAAAGAAGTGGCGAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000196329.5
ENSMUST00000196644.5
ENSMUST00000196711.5
ENSMUST00000199004.5
ENSMUST00000199808.5
ENSMUST00000200474.5
CDS GCA 72 bp GTCAAAGTTGAATCTGCTCAGATCTCTAGATTCTGTTaGTCTTCTGTCACCATGTGTAAGTGCCCCCAAACT +
Preference number: 6 (lower is better)
Translates to: VKVESAQISRFC*SSVTMCKCPQT
Trigger: AGTTTGGGGGCACTTACACATGGTGACAGAAGAGCAACAGAATCTAGAGATCTGAGCAGATTCAACTTTGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS CAA 72 bp ATCCTCTACATTAATCAAGCCCACTCCTATCAGTCCTaGCCGAACGTCTTTAAAGAATTCTCCAGGGTAGTC +
Preference number: 6 (lower is better)
Translates to: ILYINQAHSYQS*PNVFKEFSRVV
Trigger: GACTACCCTGGAGAATTCTTTAAAGACGTTCGGCAAGGACTGATAGGAGTGGGCTTGATTAATGTAGAGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS CAA 72 bp ACTTACCAGTGGCACTGGCATAAACAACTCTGGCTTTaGGCAATTTGTTCTGAAGCTCTAAAACAGCCAAGC +
Preference number: 6 (lower is better)
Translates to: TYQWHWHKQLWL*AICSEALKQPS
Trigger: GCTTGGCTGTTTTAGAGCTTCAGAACAAATTGCCAAAAGCCAGAGTTGTTTATGCCAGTGCCACTGGTAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200674.2
CDS CAA 90 bp TTTAGTCATTACAATTGTAGATCCCAAAGTTGGAAGTTGATTTATTaGATTCAGCACAAACGTTGTAGTGGATGGAGGCTGCTGCCTCAC +
Preference number: 6 (lower is better)
Translates to: FSHYNCRSQSWKLIY*IQHKRCSGWRLLPH
Trigger: GTGAGGCAGCAGCCTCCATCCACTACAACGTTTGTGCTGAATCAAATAAATCAACTTCCAACTTTGGGATCTACAATTGTAATGACTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065263.12
ENSMUST00000196644.5
ENSMUST00000199004.5
ENSMUST00000199808.5
CDS TCA 72 bp GTCTTTAAAGAATTCTCCAGGGTAGTCTGGAGGTGGTaGTACCATAGGAGAATCCAAGTTTACAATGGATTT +
Preference number: 6 (lower is better)
Translates to: VFKEFSRVVWRW*YHRRIQVYNGF
Trigger: AAATCCATTGTAAACTTGGATTCTCCTATGGTATCACCACCTCCAGACTACCCTGGAGAATTCTTTAAAGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS CAA 72 bp TTATGGTCTTTCCTAATTAACCACGGATCATCCTCATaGTCTTCACTGGACTCATCTCTGAAGGGATTGAAA +
Preference number: 6 (lower is better)
Translates to: LWSFLINHGSSS*SSLDSSLKGLK
Trigger: TTTCAATCCCTTCAGAGATGAGTCCAGTGAAGACAATGAGGATGATCCGTGGTTAATTAGGAAAGACCATAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000196644.5
ENSMUST00000199808.5
ENSMUST00000200474.5
CDS CAA 90 bp TTTAGTCATTACAATTGTAGATCCCAAAGTTGGAAGTTGATTTATTaGATTCAGCACAAACGTTGTAGTGGATGGAGGCTGCTGCTGTTG +
Preference number: 6 (lower is better)
Translates to: FSHYNCRSQSWKLIY*IQHKRCSGWRLLLL
Trigger: CAACAGCAGCAGCCTCCATCCACTACAACGTTTGTGCTGAATCAAATAAATCAACTTCCAACTTTGGGATCTACAATTGTAATGACTAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000196329.5
ENSMUST00000196711.5
CDS GCA 72 bp ATAATAGCAATATTCTTGTCTCCATCCATGAACCTTTaGTTCTCTGTGATGTTTAGAATCTCCACAGGCACA +
Preference number: 6 (lower is better)
Translates to: IIAIFLSPSMNL*FSVMFRISTGT
Trigger: TGTGCCTGTGGAGATTCTAAACATCACAGAGAAGCAAAGGTTCATGGATGGAGACAAGAATATTGCTATTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000199808.5
CDS CAA 72 bp CTTTACAAGGACTATCTCTTGGTGAACTGTTGTTACTaGGGGCTGTCAAATCGATTCCTAGCAAACTATAAA +
Preference number: 6 (lower is better)
Translates to: LYKDYLLVNCCY*GLSNRFLANYK
Trigger: TTTATAGTTTGCTAGGAATCGATTTGACAGCCCCAAGTAACAACAGTTCACCAAGAGATAGTCCTTGTAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000196644.5
ENSMUST00000199808.5
ENSMUST00000200474.5
CDS CAA 90 bp TTTAGTCATTACAATTGTAGATCCCAAAGTTGGAAGTTGATTTATTaGATTCAGCACAAACGTTGTAGTGGATGGAGGCTGCCTCACATT +
Preference number: 6 (lower is better)
Translates to: FSHYNCRSQSWKLIY*IQHKRCSGWRLPHI
Trigger: AATGTGAGGCAGCCTCCATCCACTACAACGTTTGTGCTGAATCAAATAAATCAACTTCCAACTTTGGGATCTACAATTGTAATGACTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168651.6
CDS CAA 90 bp TTTAGTCATTACAATTGTAGATCCCAAAGTTGGAAGTTGATTTATTaGATTCAGCACAAACGTTGTAGTGGATGGAGGCTGCTGTTGAAC +
Preference number: 6 (lower is better)
Translates to: FSHYNCRSQSWKLIY*IQHKRCSGWRLLLN
Trigger: GTTCAACAGCAGCCTCCATCCACTACAACGTTTGTGCTGAATCAAATAAATCAACTTCCAACTTTGGGATCTACAATTGTAATGACTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000198420.5
ENSMUST00000200474.5
CDS CAA 72 bp TTATTTTCTTTACAAGGACTATCTCTTGGTGAACTGTaGTTACTTGGGGCTGTCAAATCGATTCCTAGCAAA +
Preference number: 6 (lower is better)
Translates to: LFSLQGLSLGEL*LLGAVKSIPSK
Trigger: TTTGCTAGGAATCGATTTGACAGCCCCAAGTAACAACAGTTCACCAAGAGATAGTCCTTGTAAAGAAAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000065263.12
ENSMUST00000168651.6
ENSMUST00000196644.5
ENSMUST00000199808.5
ENSMUST00000200474.5