Pregenerated sensors for SBK3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000085272Ensembl transcript IDs: ENSMUST00000133272.2, ENSMUST00000144863.8
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGCTGGGAGCTGGGGACTCCAGACACACAGAACTGGAGTCTGTGTaGTGTTTGGGACAAGGAAGAGCCATGAAACTAGTCCTGGCTCTC | + |
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Preference number: 1 (lower is better) Translates to: LLGAGDSRHTELESV*CLGQGRAMKLVLAL Trigger: GAGAGCCAGGACTAGTTTCATGGCTCTTCCTTGTCCCAAACAGCACACAGACTCCAGTTCTGTGTGTCTGGAGTCCCCAGCTCCCAGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR CCA 90 bp | AAGGACAGGAAGAGTAGACATAGGTATCTGGGAGGGCTCCAGGGATaGGAACGTTTCTGTAGGACAAGATGGAAGTCAAAGGTGCTAGGT | + |
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Preference number: 1 (lower is better) Translates to: KDRKSRHRYLGGLQG*ERFCRTRWKSKVLG Trigger: ACCTAGCACCTTTGACTTCCATCTTGTCCTACAGAAACGTTCCCATCCCTGGAGCCCTCCCAGATACCTATGTCTACTCTTCCTGTCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR TCA 90 bp | CTGGTTGGGATTATAGTTCTGGCTGCAGTCTTTGTTTTCCCTGCATaGACCTCTGGAAGCTCATATCCACCACTGTGTAAATCTCCATCA | + |
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Preference number: 1 (lower is better) Translates to: LVGIIVLAAVFVFPA*TSGSSYPPLCKSPS Trigger: TGATGGAGATTTACACAGTGGTGGATATGAGCTTCCAGAGGTTCATGCAGGGAAAACAAAGACTGCAGCCAGAACTATAATCCCAACCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR CCA 90 bp | TTATTCATAACCAGAGAACTTGGGGCATCTTGTGGAAATAGAAGATaGAAGGGTCTAGACCAGATGTTTGTGACAAGGACAGGAAGAGTA | + |
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Preference number: 1 (lower is better) Translates to: LFITRELGASCGNRR*KGLDQMFVTRTGRV Trigger: TACTCTTCCTGTCCTTGTCACAAACATCTGGTCTAGACCCTTCCATCTTCTATTTCCACAAGATGCCCCAAGTTCTCTGGTTATGAATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR CCA 90 bp | GTGACAAGGACAGGAAGAGTAGACATAGGTATCTGGGAGGGCTCCAGGGATGGGCCAGCACTGGGGAAGTaGAGGTGGAGGATCCAAAGC | + |
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Preference number: 2 (lower is better) Translates to: VTRTGRVDIGIWEGSRDGPALGK*RWRIQS Trigger: GCTTTGGATCCTCCACCTCCACTTCCCCAGTGCTGG...CCCATCCCTGGAGCCCTCCCAGATACCTATGTCTACTCTTCCTGTCCTTGTCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR CCA 90 bp | GTGACAAGGACAGGAAGAGTAGACATAGGTATCTGGGAGGGCTCCAGGGATGGGAGTACAGGCCAGCACTaGGGAAGTACAGGCCAGCAC | + |
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Preference number: 2 (lower is better) Translates to: VTRTGRVDIGIWEGSRDGSTGQH*GSTGQH Trigger: GTGCTGGCCTGTACTTCCCCAGTGCTGGCCTGTACT...CCCATCCCTGGAGCCCTCCCAGATACCTATGTCTACTCTTCCTGTCCTTGTCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR CCA 90 bp | GGACTCCAGACACACAGAACTGGAGTCTGTGTGCTGTTTGGGACAAGGAAGAGCGGTGTCTGTCGGCAGTaGTGTGGTGGTGTGTGGGTG | + |
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Preference number: 2 (lower is better) Translates to: GLQTHRTGVCVLFGTRKSGVCRQ*CGGVWV Trigger: CACCCACACACCACCACACCACTGCCGACAGACACC...GCTCTTCCTTGTCCCAAACAGCACACAGACTCCAGTTCTGTGTGTCTGGAGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR CCA 90 bp | CAGGCCTGTAATCCCAGCATTGAGAGGTGGACGAAGGATGATCAGAAGTTCGAGAGTACAGGCCAGCACTaGGGAAGTGGAGGTGGAGGA | + |
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Preference number: 2 (lower is better) Translates to: QACNPSIERWTKDDQKFESTGQH*GSGGGG Trigger: TCCTCCACCTCCACTTCCCCAGTGCTGGCCTGTACT...CTCGAACTTCTGATCATCCTTCGTCCACCTCTCAATGCTGGGATTACAGGCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR GCA 90 bp | GGACTCCAGACACACAGAACTGGAGTCTGTGTGCTGTTTGGGACAAGGAAGAGCTCAGTTGTGTGTGTGTaGACTTCAGGGAAGGGAGAT | + |
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Preference number: 2 (lower is better) Translates to: GLQTHRTGVCVLFGTRKSSVVCV*TSGKGD Trigger: ATCTCCCTTCCCTGAAGTGCACACACACACAACTGA...GCTCTTCCTTGTCCCAAACAGCACACAGACTCCAGTTCTGTGTGTCTGGAGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR GCA 90 bp | GGTGGTGTGTGGGTGGTGGTGGTGGTGGTGGTAGTGGTATGTGTACACACATGTCAGGTTCCTCAACAATaGCCAGCACCTCAAAATAGT | + |
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Preference number: 2 (lower is better) Translates to: GGVWVVVVVVVVVCVHTCQVPQQ*PAPQNS Trigger: ACTATTTTGAGGTGCTGGGCATTGTTGAGGAACCTG...ACATGTGTGTACACATACCACTACCACCACCACCACCACCACCCACACACCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR GCA 90 bp | CAGGCCTGTAATCCCAGCATTGAGAGGTGGACGAAGGATGATCAGAAGTTCGAGGAACTGGAGTCTGTGTaGTGTTTGGGACAAGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: QACNPSIERWTKDDQKFEELESV*CLGQGR Trigger: TCTTCCTTGTCCCAAACAGCACACAGACTCCAGTTC...CTCGAACTTCTGATCATCCTTCGTCCACCTCTCAATGCTGGGATTACAGGCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR CCA 90 bp | AATTCCTGTGATGTTTCTAGTTTCTGCTGGGAGCTGGGGACTCCAGACACACAGGGAGAAACGGAAACTTaGGCTGTGAAGATGCTCAGG | + |
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Preference number: 2 (lower is better) Translates to: NSCDVSSFCWELGTPDTQGETET*AVKMLR Trigger: CCTGAGCATCTTCACAGCCCAAGTTTCCGTTTCTCC...CTGTGTGTCTGGAGTCCCCAGCTCCCAGCAGAAACTAGAAACATCACAGGAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR GCA 90 bp | TCCAGTCCGGGGCACCATGGTTCATTTGGTGAACTCACTGTTAAATCTAGAAAGGGGAAGGGAGATGTGTaGACATCCACATCCAGTGTG | + |
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Preference number: 2 (lower is better) Translates to: SSPGHHGSFGELTVKSRKGKGDV*TSTSSV Trigger: CACACTGGATGTGGATGTGCACACATCTCCCTTCCC...CTTTCTAGATTTAACAGTGAGTTCACCAAATGAACCATGGTGCCCCGGACTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR CAA 90 bp | AGTGGAGGTGGAGGATCCAAAGCTCTAGGTCAGCTACGTAGTCAGTaGAGGGCAGTAAAGAAAAATCAAGGTGAGAAAGAAGAGGGAGGA | + |
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Preference number: 2 (lower is better) Translates to: SGGGGSKALGQLRSQ*RAVKKNQGEKEEGG Trigger: TCCTCCCTCTTCTTTCTCACCTTGATTTTTCTTTACTGCCCTCAACTGACTACGTAGCTGACCTAGAGCTTTGGATCCTCCACCTCCACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR CAA 90 bp | GGTGGTGGTGGTGGTGGTAGTGGTATGTGTACACACATGTTTCTTTaGCTCTGTGTGTGTGACAATTCCCACAATGTCACCAACACAGAG | + |
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Preference number: 2 (lower is better) Translates to: GGGGGGSGMCTHMFL*LCVCDNSHNVTNTE Trigger: CTCTGTGTTGGTGACATTGTGGGAATTGTCACACACACAGAGCAAAAGAAACATGTGTGTACACATACCACTACCACCACCACCACCACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR CAA 90 bp | ATTAGCAAAGCTTTCAACAATAGTCATCCATCCTACCCACCATCTTaGTCCTCAAGGTCCTTTTCCTGTTCCCAAGTCCAGTCCGGGGCA | + |
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Preference number: 2 (lower is better) Translates to: ISKAFNNSHPSYPPS*SSRSFSCSQVQSGA Trigger: TGCCCCGGACTGGACTTGGGAACAGGAAAAGGACCTTGAGGACAAAGATGGTGGGTAGGATGGATGACTATTGTTGAAAGCTTTGCTAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR CCA 90 bp | GGTTACCCTCTGCCACCTAGTGAGGGAACATCCTGGGATACAGAAAAACTTGAATGTGGAAATAGAAGATaGAAGGGTCTAGACCAGATG | + |
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Preference number: 2 (lower is better) Translates to: GYPLPPSEGTSWDTEKLECGNRR*KGLDQM Trigger: CATCTGGTCTAGACCCTTCCATCTTCTATTTCCACA...TTCAAGTTTTTCTGTATCCCAGGATGTTCCCTCACTAGGTGGCAGAGGGTAACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR CCA 90 bp | GCTTTCAACAATAGTCATCCATCCTACCCACCATCTTTGTCCTCAAGGTCCTTTTTCTGTAGGACAAGATaGAAGTCAAAGGTGCTAGGT | + |
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Preference number: 2 (lower is better) Translates to: AFNNSHPSYPPSLSSRSFFCRTR*KSKVLG Trigger: ACCTAGCACCTTTGACTTCCATCTTGTCCTACAGAA...AAAGGACCTTGAGGACAAAGATGGTGGGTAGGATGGATGACTATTGTTGAAAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR CCA 90 bp | GCTTTCAACAATAGTCATCCATCCTACCCACCATCTTTGTCCTCAAGGTCCTTTGTCCCTGAATATAGATaGAGCTGGGTTATTCATAAC | + |
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Preference number: 2 (lower is better) Translates to: AFNNSHPSYPPSLSSRSFVPEYR*SWVIHN Trigger: GTTATGAATAACCCAGCTCCATCTATATTCAGGGAC...AAAGGACCTTGAGGACAAAGATGGTGGGTAGGATGGATGACTATTGTTGAAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR CCA 72 bp | AGTACAGGCCAGCACTGGGGAAGTACAGGCCAGCACTaGGGAAGTGGAGGTGGAGGATCCAAAGCTCTAGGT | + |
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Preference number: 3 (lower is better) Translates to: STGQHWGSTGQH*GSGGGGSKALG Trigger: ACCTAGAGCTTTGGATCCTCCACCTCCACTTCCCCAGTGCTGGCCTGTACTTCCCCAGTGCTGGCCTGTACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGACACACAGTTGCCAAGGTCCCTTGGACCCTTCACACAGCTTGCCCCAAGGCCCCTTAGTCCTCAGTaGTGTGTGTGTGCACTTCAG | + |
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Preference number: 3 (lower is better) Translates to: KDTQLPRSLGPFTQLAPRPLSPQ*CVCALQ Trigger: CTGAAGTGCACACACACACAACTGAGGACTAAGGGG...CCTTGGGGCAAGCTGTGTGAAGGGTCCAAGGGACCTTGGCAACTGTGTGTCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR CAA 90 bp | ACAAGGACAGGAAGAGTAGACATAGGTATCTGGGAGGGCTCCAGGGATGGGAACGGGGAAGAGGTTAAGTaGATAGAGGGCCTTCCTAGC | + |
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Preference number: 3 (lower is better) Translates to: TRTGRVDIGIWEGSRDGNGEEVK*IEGLPS Trigger: GCTAGGAAGGCCCTCTATCAACTTAACCTCTTCCCC...GTTCCCATCCCTGGAGCCCTCCCAGATACCTATGTCTACTCTTCCTGTCCTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR GCA 72 bp | GCTGGGGACTCCAGACACACAGAACTGGAGTCTGTGTaGTGTTTGGGACAAGGAAGAGCCATGAAACTAGTC | + |
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Preference number: 3 (lower is better) Translates to: AGDSRHTELESV*CLGQGRAMKLV Trigger: GACTAGTTTCATGGCTCTTCCTTGTCCCAAACAGCACACAGACTCCAGTTCTGTGTGTCTGGAGTCCCCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR GCA 72 bp | ACAGTTGCCAAGGTCCCTTGGACCCTTCACACAGCTTaGCCCAAGGTCAGCATCTTACCCAAGATTCATCAC | + |
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Preference number: 3 (lower is better) Translates to: TVAKVPWTLHTA*PKVSILPKIHH Trigger: GTGATGAATCTTGGGTAAGATGCTGACCTTGGGGCAAGCTGTGTGAAGGGTCCAAGGGACCTTGGCAACTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR CCA 72 bp | CACAGTTGTAAAAGACACACAGTTGCCAAGGTCCCTTaGACCCTTCACACAGCTTGCCCCAAGGTCAGCATC | + |
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Preference number: 3 (lower is better) Translates to: HSCKRHTVAKVP*TLHTACPKVSI Trigger: GATGCTGACCTTGGGGCAAGCTGTGTGAAGGGTCCAAGGGACCTTGGCAACTGTGTGTCTTTTACAACTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR CCA 72 bp | GGGCTCCAGGGATGGGAACGTTTCTGTAGGACAAGATaGAAGTCAAAGGTGCTAGGTGGAGCATATAAGGTG | + |
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Preference number: 3 (lower is better) Translates to: GLQGWERFCRTR*KSKVLGGAYKV Trigger: CACCTTATATGCTCCACCTAGCACCTTTGACTTCCATCTTGTCCTACAGAAACGTTCCCATCCCTGGAGCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR CCA 72 bp | ATCATAACACAGGCCTGTAATCCCAGCATTGAGAGGTaGACGAAGGATGATCAGAAGTTCGAGGTTACCCTC | + |
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Preference number: 3 (lower is better) Translates to: IITQACNPSIER*TKDDQKFEVTL Trigger: GAGGGTAACCTCGAACTTCTGATCATCCTTCGTCCACCTCTCAATGCTGGGATTACAGGCCTGTGTTATGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR CAA 90 bp | ACAAGGACAGGAAGAGTAGACATAGGTATCTGGGAGGGCTCCAGGGATGGGAACACACACATGTTTCTTTaGCTCTGTGTGTGTGACAAT | + |
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Preference number: 3 (lower is better) Translates to: TRTGRVDIGIWEGSRDGNTHMFL*LCVCDN Trigger: ATTGTCACACACACAGAGCAAAAGAAACATGTGTGT...GTTCCCATCCCTGGAGCCCTCCCAGATACCTATGTCTACTCTTCCTGTCCTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR CAA 90 bp | TCCAGTCCGGGGCACCATGGTTCATTTGGTGAACTCACTGTTAAATCTAGAAAGCAGCTACGTAGTCAGTaGAGGGCAGTAAAGAAAAAT | + |
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Preference number: 3 (lower is better) Translates to: SSPGHHGSFGELTVKSRKQLRSQ*RAVKKN Trigger: ATTTTTCTTTACTGCCCTCAACTGACTACGTAGCTG...CTTTCTAGATTTAACAGTGAGTTCACCAAATGAACCATGGTGCCCCGGACTGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR TCA 72 bp | ATTATAGTTCTGGCTGCAGTCTTTGTTTTCCCTGCATaGACCTCTGGAAGCTCATATCCACCACTGTGTAAA | + |
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Preference number: 3 (lower is better) Translates to: IIVLAAVFVFPA*TSGSSYPPLCK Trigger: TTTACACAGTGGTGGATATGAGCTTCCAGAGGTTCATGCAGGGAAAACAAAGACTGCAGCCAGAACTATAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR-3UTR CAA 90 bp | GTTCTCAACCCTCCTAATGCTGTGACTCTTCAATATAATTCCCCAATGATAAAAAGGAGAAACGGAAACTaGGGCTGTGAAGATGCTCAG | + |
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Preference number: 3 (lower is better) Translates to: VLNPPNAVTLQYNSPMIKRRNGN*GCEDAQ Trigger: CTGAGCATCTTCACAGCCCAAGTTTCCGTTTCTCCT...TTTTATCATTGGGGAATTATATTGAAGAGTCACAGCATTAGGAGGGTTGAGAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR CCA 90 bp | GGGAAGGGAGATGTGTGCACATCCACATCCAGTGTGTTCCCCCTTCTCCCAGAACCTCCTTGGCGTGGCTaGGCTAGGAGCACGCGGCCA | + |
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Preference number: 4 (lower is better) Translates to: GKGDVCTSTSSVFPLLPEPPWRG*ARSTRP Trigger: TGGCCGCGTGCTCCTAGCCCAGCCACGCCAAGGAGG...TTCTGGGAGAAGGGGGAACACACTGGATGTGGATGTGCACACATCTCCCTTCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR GCA 90 bp | AGTGTGTTCCCCCTTCTCCCAGAACAGCTGCTGCCTTTCCCAGGTGGCCTCAAGGGCTTGACATCTGCATaGACTAGCCCCCGGCCATGG | + |
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Preference number: 4 (lower is better) Translates to: SVFPLLPEQLLPFPGGLKGLTSA*TSPRPW Trigger: CCATGGCCGGGGGCTAGTGCATGCAGATGTCAAGCC...CTTGAGGCCACCTGGGAAAGGCAGCAGCTGTTCTGGGAGAAGGGGGAACACACT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR CCA 90 bp | GGGAAGGGAGATGTGTGCACATCCACATCCAGTGTGTTCCCCCTTCTCCCAGAAGCTGGGGGTGCAAACTaGTCCCAGGGTGCTGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: GKGDVCTSTSSVFPLLPEAGGAN*SQGAGG Trigger: GCCACCAGCACCCTGGGACCAGTTTGCACCCCCAGC...TTCTGGGAGAAGGGGGAACACACTGGATGTGGATGTGCACACATCTCCCTTCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR CCA 90 bp | GTGACAAGGACAGGAAGAGTAGACATAGGTATCTGGGAGGGCTCCAGGGATGGGGTTCAGGTGGTGCAGTaGGCAGAGGCACTGGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: VTRTGRVDIGIWEGSRDGVQVVQ*AEALGE Trigger: CTCCCCCAGTGCCTCTGCCCACTGCACCACCTGAAC...CCCATCCCTGGAGCCCTCCCAGATACCTATGTCTACTCTTCCTGTCCTTGTCAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR GCA 90 bp | CTGGGGACTCCAGACACACAGAACTGGAGTCTGTGTGCTGTTTGGGACAAGGAAGGTCAGAGCTGGGGGTaGAAACTGGTCCCAGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: LGTPDTQNWSLCAVWDKEGQSWG*KLVPGC Trigger: GCACCCTGGGACCAGTTTGCACCCCCAGCTCTGACC...TTCCTTGTCCCAAACAGCACACAGACTCCAGTTCTGTGTGTCTGGAGTCCCCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR CCA 90 bp | ACAAGGACAGGAAGAGTAGACATAGGTATCTGGGAGGGCTCCAGGGATGGGAACTGGGGGAGCAGGGGTTaGGCTGCCTTCAGGTCGAGT | + |
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Preference number: 4 (lower is better) Translates to: TRTGRVDIGIWEGSRDGNWGSRG*AAFRSS Trigger: ACTCGACCTGAAGGCAGCCCAACCCCTGCTCCCCCA...GTTCCCATCCCTGGAGCCCTCCCAGATACCTATGTCTACTCTTCCTGTCCTTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR TCA 90 bp | GTGACAAGGACAGGAAGAGTAGACATAGGTATCTGGGAGGGCTCCAGGGATGGGTTAAGGGCCACAGTTTaGCCTCCTTGGCGTGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: VTRTGRVDIGIWEGSRDGLRATV*PPWRGW Trigger: CCAGCCACGCCAAGGAGGTCAAACTGTGGCCCTTAA...CCCATCCCTGGAGCCCTCCCAGATACCTATGTCTACTCTTCCTGTCCTTGTCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR CCA 90 bp | GGACTCCAGACACACAGAACTGGAGTCTGTGTGCTGTTTGGGACAAGGAAGAGCCCAGGAGTCCACAGCTaGCCTCAGGGGCAGTGTGTT | + |
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Preference number: 4 (lower is better) Translates to: GLQTHRTGVCVLFGTRKSPGVHS*PQGQCV Trigger: AACACACTGCCCCTGAGGCCAGCTGTGGACTCCTGG...GCTCTTCCTTGTCCCAAACAGCACACAGACTCCAGTTCTGTGTGTCTGGAGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR CCA 90 bp | AGCTGGGGACTCCAGACACACAGAACTGGAGTCTGTGTGCTGTTTGGGACAAGGAAGGGAAGCAGGCCGTaGCAGCACAGAAGAGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: SWGLQTHRTGVCVLFGTRKGSRP*QHRREA Trigger: TGCTTCTCTTCTGTGCTGCCACGGCCTGCTTCCCTT...CCTTGTCCCAAACAGCACACAGACTCCAGTTCTGTGTGTCTGGAGTCCCCAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR TCA 90 bp | CACGACCCACAGGCTGAGAACCACTGCTCTTACAGAAGAGTGGTCCCATCAGAACCACTCCTCCAAACTTaGTCCTCCCTCTTCTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: HDPQAENHCSYRRVVPSEPLLQT*SSLFFL Trigger: GAGGAAGAAGAGGGAGGATCAAGTTTGGAGGAGTGG...TTCTGATGGGACCACTCTTCTGTAAGAGCAGTGGTTCTCAGCCTGTGGGTCGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR CAA 72 bp | TGCAGCAGCACACAATTGGGACCCCTTAGTCCTCAGTaGTGTGTGTGTGCACTTCAGGGAAGGGAGATGTGT | + |
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Preference number: 4 (lower is better) Translates to: CSSTQLGPLSPQ*CVCALQGREMC Trigger: ACACATCTCCCTTCCCTGAAGTGCACACACACACAACTGAGGACTAAGGGGTCCCAATTGTGTGCTGCTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR CAA 72 bp | CACAGTTGCCAAGGTCCCTTGGACCCTTCACACAGCTaGCCCCAAGGTCAGCATCTTACCCAAGATTCATCA | + |
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Preference number: 4 (lower is better) Translates to: HSCQGPLDPSHS*PQGQHLTQDSS Trigger: TGATGAATCTTGGGTAAGATGCTGACCTTGGGGCAAGCTGTGTGAAGGGTCCAAGGGACCTTGGCAACTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR TCA 90 bp | GGGAAGGGAGATGTGTGCACATCCACATCCAGTGTGTTCCCCCTTCTCCCAGAACAGGGTGCAAACTCCTaGGCAAAGGCAAAATATCGA | + |
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Preference number: 4 (lower is better) Translates to: GKGDVCTSTSSVFPLLPEQGANS*AKAKYR Trigger: TCGATATTTTGCCTTTGCTCAGGAGTTTGCACCCTG...TTCTGGGAGAAGGGGGAACACACTGGATGTGGATGTGCACACATCTCCCTTCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR CCA 90 bp | GGTTACCCTCTGCCACCTAGTGAGGGAACATCCTGGGATACAGAAAAACTTGAACTTCACCATCAGCTCTaGGAGGCCCTTCTCCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: GYPLPPSEGTSWDTEKLELHHQL*EALLLE Trigger: CTCCAGGAGAAGGGCCTCCCAGAGCTGATGGTGAAG...TTCAAGTTTTTCTGTATCCCAGGATGTTCCCTCACTAGGTGGCAGAGGGTAACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR CCA 90 bp | GTTCTCAACCCTCCTAATGCTGTGACTCTTCAATATAATTCCCCAATGATAAAACTGGTCCCAGGGTGCTaGTGGCCGAGGGGGCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: VLNPPNAVTLQYNSPMIKLVPGC*WPRGLG Trigger: CCCCAGCCCCCTCGGCCACCAGCACCCTGGGACCAG...TTTTATCATTGGGGAATTATATTGAAGAGTCACAGCATTAGGAGGGTTGAGAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR CCA 90 bp | TCCCACAATGTCACCAACACAGAGCCCAGAAACTGTCAGATCAACATAATATCGCCCTCTCCACTACCCTaGAGCCCCCAGTTGTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: SHNVTNTEPRNCQINIISPSPLP*SPQLSP Trigger: AGGGGACAACTGGGGGCTCCAGGGTAGTGGAGAGGG...CGATATTATGTTGATCTGACAGTTTCTGGGCTCTGTGTTGGTGACATTGTGGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR CCA 90 bp | TCTAGAAAGTGTAGGTTCCTGGTTGGGATTATAGTTCTGGCTGCAGTCTTTGTTCAGGGGCAGTGTGTTTaGTGGCAGCAGGAGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: SRKCRFLVGIIVLAAVFVQGQCV*WQQEAE Trigger: CTCTGCCTCCTGCTGCCACCAAACACACTGCCCCTG...AACAAAGACTGCAGCCAGAACTATAATCCCAACCAGGAACCTACACTTTCTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR CAA 72 bp | AGAGCACAGAAATATATCTGTAGGAGAAACGGAAACTaGGGCTGTGAAGATGCTCAGGGGTTGGGGAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: RAQKYICRRNGN*GCEDAQGLGKR Trigger: CCTCTTCCCCAACCCCTGAGCATCTTCACAGCCCAAGTTTCCGTTTCTCCTACAGATATATTTCTGTGCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR CAA 72 bp | AATCACAAAGGTCACACAGTTGTAAAAGACACACAGTaGCCAAGGTCCCTTGGACCCTTCACACAGCTTGCC | + |
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Preference number: 4 (lower is better) Translates to: NHKGHTVVKDTQ*PRSLGPFTQLA Trigger: GGCAAGCTGTGTGAAGGGTCCAAGGGACCTTGGCAACTGTGTGTCTTTTACAACTGTGTGACCTTTGTGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR TCA 90 bp | CATAATATCGGATCCTGTAAGTTTGGATTTTGTGCCTCAAATGGTGGGAGCTCCGCACATTGTCTGGCTTaGCATCTGCATGCACTAGCC | + |
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Preference number: 4 (lower is better) Translates to: HNIGSCKFGFCASNGGSSAHCLA*HLHALA Trigger: GGCTAGTGCATGCAGATGTCAAGCCAGACAATGTGC...GGAGCTCCCACCATTTGAGGCACAAAATCCAAACTTACAGGATCCGATATTATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR CCA 90 bp | CAGAAGAGTGGTCCCATCAGAATTCATGATAAGCATTCAACATTTCAGAGCACAAGGTCCAGAAGTCCCTaGAGCAAGGTCAGAGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: QKSGPIRIHDKHSTFQSTRSRSP*SKVRAG Trigger: CCCAGCTCTGACCTTGCTCCAGGGACTTCTGGACCT...TGTGCTCTGAAATGTTGAATGCTTATCATGAATTCTGATGGGACCACTCTTCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| 3UTR CAA 72 bp | CTGTTCCCAAGTCCAGTCCGGGGCACCATGGTTCATTaGGTGAACTCACTGTTAAATCTAGAAAGTGTAGGT | + |
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Preference number: 4 (lower is better) Translates to: LFPSPVRGTMVH*VNSLLNLESVG Trigger: ACCTACACTTTCTAGATTTAACAGTGAGTTCACCAAATGAACCATGGTGCCCCGGACTGGACTTGGGAACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR CCA 90 bp | GTTCTCAACCCTCCTAATGCTGTGACTCTTCAATATAATTCCCCAATGATAAAAGAGCAAGGTCAGAGCTaGGGGTGCAAACTGGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: VLNPPNAVTLQYNSPMIKEQGQS*GCKLVP Trigger: TGGGACCAGTTTGCACCCCCAGCTCTGACCTTGCTC...TTTTATCATTGGGGAATTATATTGAAGAGTCACAGCATTAGGAGGGTTGAGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR GCA 90 bp | GTTCTCAACCCTCCTAATGCTGTGACTCTTCAATATAATTCCCCAATGATAAAAGAGATCCCCACAGGGTaGAAACTCCTGAGCAAAGGC | + |
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Preference number: 4 (lower is better) Translates to: VLNPPNAVTLQYNSPMIKEIPTG*KLLSKG Trigger: GCCTTTGCTCAGGAGTTTGCACCCTGTGGGGATCTC...TTTTATCATTGGGGAATTATATTGAAGAGTCACAGCATTAGGAGGGTTGAGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS GCA 90 bp | CAGGTGGTGCAGTGGGCAGAGGCACTGGGGGAGCAGGGGTTGGGCTaGCTTCAGGTCGAGTCAAACCCAGGTCACCCAGGGCTACTCTGT | + |
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Preference number: 5 (lower is better) Translates to: QVVQWAEALGEQGLG*LQVESNPGHPGLLC Trigger: ACAGAGTAGCCCTGGGTGACCTGGGTTTGACTCGACCTGAAGGCAGCCCAACCCCTGCTCCCCCAGTGCCTCTGCCCACTGCACCACCTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS CCA 90 bp | GAGTTCAGGTGGTGCAGTGGGCAGAGGCACTGGGGGAGCAGGGGTTaGGCTGCCTTCAGGTCGAGTCAAACCCAGGTCACCCAGGGCTAC | + |
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Preference number: 5 (lower is better) Translates to: EFRWCSGQRHWGSRG*AAFRSSQTQVTQGY Trigger: GTAGCCCTGGGTGACCTGGGTTTGACTCGACCTGAAGGCAGCCCAACCCCTGCTCCCCCAGTGCCTCTGCCCACTGCACCACCTGAACTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS CCA 90 bp | TGGCAGCAGGAGGCAGAGTTCAGGTGGTGCAGTGGGCAGAGGCACTaGGGGAGCAGGGGTTGGGCTGCCTTCAGGTCGAGTCAAACCCAG | + |
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Preference number: 5 (lower is better) Translates to: WQQEAEFRWCSGQRH*GSRGWAAFRSSQTQ Trigger: CTGGGTTTGACTCGACCTGAAGGCAGCCCAACCCCTGCTCCCCCAGTGCCTCTGCCCACTGCACCACCTGAACTCTGCCTCCTGCTGCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS CCA 90 bp | GCTGGGGGTGCAAACTGGTCCCAGGGTGCTGGTGGCCGAGGGGGCTaGGGCTTAGTGGTCATCCAACCAGCAAAGGCCTCAAACTCAGGA | + |
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Preference number: 5 (lower is better) Translates to: AGGANWSQGAGGRGG*GLVVIQPAKASNSG Trigger: TCCTGAGTTTGAGGCCTTTGCTGGTTGGATGACCACTAAGCCCCAGCCCCCTCGGCCACCAGCACCCTGGGACCAGTTTGCACCCCCAGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS CCA 90 bp | AGCACATTGTCTGGCTTGACATCTGCATGCACTAGCCCCCGGCCATaGAGGAAGTCCAGGGCTCCAGCCAGCTGGGCCACTATCCGCTTC | + |
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Preference number: 5 (lower is better) Translates to: STLSGLTSACTSPRP*RKSRAPASWATIRF Trigger: GAAGCGGATAGTGGCCCAGCTGGCTGGAGCCCTGGACTTCCTCCATGGCCGGGGGCTAGTGCATGCAGATGTCAAGCCAGACAATGTGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS CCA 90 bp | GCTAGTGGAGGACTCCTAGTCTCAGGATCCAGGTCCAGAAGTCCCTaGAGCAAGGTCAGAGCTGGGGGTGCAAACTGGTCCCAGGGTGCT | + |
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Preference number: 5 (lower is better) Translates to: ASGGLLVSGSRSRSP*SKVRAGGANWSQGA Trigger: AGCACCCTGGGACCAGTTTGCACCCCCAGCTCTGACCTTGCTCCAGGGACTTCTGGACCTGGATCCTGAGACTAGGAGTCCTCCACTAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS TCA 90 bp | GGGCTAGGAGCACGCGGCCATAGGAGCCGGAACCTAGCTTTCGGATaGGACGGTACTGTACACACAGGCTTCTTACTGATGTCACTCGGC | + |
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Preference number: 5 (lower is better) Translates to: GLGARGHRSRNLAFG*DGTVHTGFLLMSLG Trigger: GCCGAGTGACATCAGTAAGAAGCCTGTGTGTACAGTACCGTCTCATCCGAAAGCTAGGTTCCGGCTCCTATGGCCGCGTGCTCCTAGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS-3UTR CAA 90 bp | GTGACAAGGACAGGAAGAGTAGACATAGGTATCTGGGAGGGCTCCAGGGATGGGTCAGGGGCAGTGTGTTaGGTGGCAGCAGGAGGCAGA | + |
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Preference number: 5 (lower is better) Translates to: VTRTGRVDIGIWEGSRDGSGAVC*VAAGGR Trigger: TCTGCCTCCTGCTGCCACCAAACACACTGCCCCTGA...CCCATCCCTGGAGCCCTCCCAGATACCTATGTCTACTCTTCCTGTCCTTGTCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS TCA 90 bp | GCAGCGGCCCACACAGAATTCTCTCAGGAACGTTGTTCTCAGGACTaGGTCCCTTCGGAGGAGCTTAAGGGCCACAGTTTGACCTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: AAAHTEFSQERCSQD*VPSEELKGHSLTSL Trigger: CAAGGAGGTCAAACTGTGGCCCTTAAGCTCCTCCGAAGGGACTCAGTCCTGAGAACAACGTTCCTGAGAGAATTCTGTGTGGGCCGCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS TCA 90 bp | CTACTCTGTTACAGTCAGGGTCGAAGACTAGCACATTGTCTGGCTTaGCATCTGCATGCACTAGCCCCCGGCCATGGAGGAAGTCCAGGG | + |
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Preference number: 5 (lower is better) Translates to: LLCYSQGRRLAHCLA*HLHALAPGHGGSPG Trigger: CCCTGGACTTCCTCCATGGCCGGGGGCTAGTGCATGCAGATGTCAAGCCAGACAATGTGCTAGTCTTCGACCCTGACTGTAACAGAGTAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS-3UTR CAA 90 bp | CAGAAGAGTGGTCCCATCAGAATTCATGATAAGCATTCAACATTTCAGAGCACACTGGGGGAGCAGGGGTaGGGCTGCCTTCAGGTCGAG | + |
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Preference number: 5 (lower is better) Translates to: QKSGPIRIHDKHSTFQSTLGEQG*GCLQVE Trigger: CTCGACCTGAAGGCAGCCCAACCCCTGCTCCCCCAG...TGTGCTCTGAAATGTTGAATGCTTATCATGAATTCTGATGGGACCACTCTTCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR CAA 90 bp | CTGGGGACTCCAGACACACAGAACTGGAGTCTGTGTGCTGTTTGGGACAAGGAATCGAAGACTAGCACATaGTCTGGCTTGACATCTGCA | + |
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Preference number: 5 (lower is better) Translates to: LGTPDTQNWSLCAVWDKESKTST*SGLTSA Trigger: TGCAGATGTCAAGCCAGACAATGTGCTAGTCTTCGA...TTCCTTGTCCCAAACAGCACACAGACTCCAGTTCTGTGTGTCTGGAGTCCCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR CAA 90 bp | CAGGCCTGTAATCCCAGCATTGAGAGGTGGACGAAGGATGATCAGAAGTTCGAGTCCACTCCTCCAAACTaGATCCTCCCTCTTCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: QACNPSIERWTKDDQKFESTPPN*ILPLLP Trigger: AGGAAGAAGAGGGAGGATCAAGTTTGGAGGAGTGGA...CTCGAACTTCTGATCATCCTTCGTCCACCTCTCAATGCTGGGATTACAGGCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR CAA 90 bp | CCTCTGCCACCTAGTGAGGGAACATCCTGGGATACAGAAAAACTTGAAAAATTTCTTAAGGGCCACAGTTaGACCTCCTTGGCGTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: PLPPSEGTSWDTEKLEKFLKGHS*TSLAWL Trigger: CAGCCACGCCAAGGAGGTCAAACTGTGGCCCTTAAG...AAATTTTTCAAGTTTTTCTGTATCCCAGGATGTTCCCTCACTAGGTGGCAGAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS-3UTR CAA 90 bp | GCTTTCAACAATAGTCATCCATCCTACCCACCATCTTTGTCCTCAAGGTCCTTTAGCACATTGTCTGGCTaGACATCTGCATGCACTAGC | + |
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Preference number: 5 (lower is better) Translates to: AFNNSHPSYPPSLSSRSFSTLSG*TSACTS Trigger: GCTAGTGCATGCAGATGTCAAGCCAGACAATGTGCT...AAAGGACCTTGAGGACAAAGATGGTGGGTAGGATGGATGACTATTGTTGAAAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144863.8 |
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| CDS CCA 72 bp | TGGTGCAGTGGGCAGAGGCACTGGGGGAGCAGGGGTTaGGCTGCCTTCAGGTCGAGTCAAACCCAGGTCACC | + |
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Preference number: 6 (lower is better) Translates to: WCSGQRHWGSRG*AAFRSSQTQVT Trigger: GGTGACCTGGGTTTGACTCGACCTGAAGGCAGCCCAACCCCTGCTCCCCCAGTGCCTCTGCCCACTGCACCA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS CCA 72 bp | TCTGGCTTGACATCTGCATGCACTAGCCCCCGGCCATaGAGGAAGTCCAGGGCTCCAGCCAGCTGGGCCACT | + |
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Preference number: 6 (lower is better) Translates to: SGLTSACTSPRP*RKSRAPASWAT Trigger: AGTGGCCCAGCTGGCTGGAGCCCTGGACTTCCTCCATGGCCGGGGGCTAGTGCATGCAGATGTCAAGCCAGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS TCA 72 bp | ACTGAGTCCCTTCGGAGGAGCTTAAGGGCCACAGTTTaGCCTCCTTGGCGTGGCTGGGCTAGGAGCACGCGG | + |
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Preference number: 6 (lower is better) Translates to: TESLRRSLRATV*PPWRGWARSTR Trigger: CCGCGTGCTCCTAGCCCAGCCACGCCAAGGAGGTCAAACTGTGGCCCTTAAGCTCCTCCGAAGGGACTCAGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS CCA 72 bp | AGCCAGCTGGGCCACTATCCGCTTCACCATCAGCTCTaGGAGGCCCTTCTCCTGGAGCATTCCACTGAGATC | + |
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Preference number: 6 (lower is better) Translates to: SQLGHYPLHHQL*EALLLEHSTEI Trigger: GATCTCAGTGGAATGCTCCAGGAGAAGGGCCTCCCAGAGCTGATGGTGAAGCGGATAGTGGCCCAGCTGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS CCA 72 bp | GGACTCCTAGTCTCAGGATCCAGGTCCAGAAGTCCCTaGAGCAAGGTCAGAGCTGGGGGTGCAAACTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: GLLVSGSRSRSP*SKVRAGGANWS Trigger: GGACCAGTTTGCACCCCCAGCTCTGACCTTGCTCCAGGGACTTCTGGACCTGGATCCTGAGACTAGGAGTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS TCA 72 bp | TCAGCTCTGGGAGGCCCTTCTCCTGGAGCATTCCACTaGGATCCCCACAGGGTGCAAACTCCTGAGCAAAGG | + |
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Preference number: 6 (lower is better) Translates to: SALGGPSPGAFH*DPHRVQTPEQR Trigger: CCTTTGCTCAGGAGTTTGCACCCTGTGGGGATCTCAGTGGAATGCTCCAGGAGAAGGGCCTCCCAGAGCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS CAA 90 bp | TCACCCAGGGCTACTCTGTTACAGTCAGGGTCGAAGACTAGCACATaGTCTGGCTTGACATCTGCATGCACTAGCCCCCGGCCATGGAGG | + |
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Preference number: 6 (lower is better) Translates to: SPRATLLQSGSKTST*SGLTSACTSPRPWR Trigger: CCTCCATGGCCGGGGGCTAGTGCATGCAGATGTCAAGCCAGACAATGTGCTAGTCTTCGACCCTGACTGTAACAGAGTAGCCCTGGGTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS CCA 72 bp | ACTGTACACACAGGCTTCTTACTGATGTCACTCGGCTaGCTGTTAGCTCCACTAGCCGCTGCAGGGCCATGG | + |
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Preference number: 6 (lower is better) Translates to: TVHTGFLLMSLG*LLAPLAAAGPW Trigger: CCATGGCCCTGCAGCGGCTAGTGGAGCTAACAGCCAGCCGAGTGACATCAGTAAGAAGCCTGTGTGTACAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133272.2 |
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| CDS CAA 90 bp | GCTACTCTGTTACAGTCAGGGTCGAAGACTAGCACATTGTCTGGCTaGACATCTGCATGCACTAGCCCCCGGCCATGGAGGAAGTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: ATLLQSGSKTSTLSG*TSACTSPRPWRKSR Trigger: CCTGGACTTCCTCCATGGCCGGGGGCTAGTGCATGCAGATGTCAAGCCAGACAATGTGCTAGTCTTCGACCCTGACTGTAACAGAGTAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS TCA 72 bp | GCACGCGGCCATAGGAGCCGGAACCTAGCTTTCGGATaGGACGGTACTGTACACACAGGCTTCTTACTGATG | + |
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Preference number: 6 (lower is better) Translates to: ARGHRSRNLAFG*DGTVHTGFLLM Trigger: CATCAGTAAGAAGCCTGTGTGTACAGTACCGTCTCATCCGAAAGCTAGGTTCCGGCTCCTATGGCCGCGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS TCA 72 bp | TACAGTCAGGGTCGAAGACTAGCACATTGTCTGGCTTaGCATCTGCATGCACTAGCCCCCGGCCATGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: YSQGRRLAHCLA*HLHALAPGHGG Trigger: TCCTCCATGGCCGGGGGCTAGTGCATGCAGATGTCAAGCCAGACAATGTGCTAGTCTTCGACCCTGACTGTA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS CAA 72 bp | TTACAGTCAGGGTCGAAGACTAGCACATTGTCTGGCTaGACATCTGCATGCACTAGCCCCCGGCCATGGAGG | + |
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Preference number: 6 (lower is better) Translates to: LQSGSKTSTLSG*TSACTSPRPWR Trigger: CCTCCATGGCCGGGGGCTAGTGCATGCAGATGTCAAGCCAGACAATGTGCTAGTCTTCGACCCTGACTGTAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS CAA 72 bp | GCTACTCTGTTACAGTCAGGGTCGAAGACTAGCACATaGTCTGGCTTGACATCTGCATGCACTAGCCCCCGG | + |
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Preference number: 6 (lower is better) Translates to: ATLLQSGSKTST*SGLTSACTSPR Trigger: CCGGGGGCTAGTGCATGCAGATGTCAAGCCAGACAATGTGCTAGTCTTCGACCCTGACTGTAACAGAGTAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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| CDS GCA 72 bp | CTTCTCCTGGAGCATTCCACTGAGATCCCCACAGGGTaGAAACTCCTGAGCAAAGGCAAAATATCGAGGTGT | + |
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Preference number: 6 (lower is better) Translates to: LLLEHSTEIPTG*KLLSKGKISRC Trigger: ACACCTCGATATTTTGCCTTTGCTCAGGAGTTTGCACCCTGTGGGGATCTCAGTGGAATGCTCCAGGAGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000133272.2 ENSMUST00000144863.8 |
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