Pregenerated sensors for SBDS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025337Ensembl transcript IDs: ENSMUST00000026387.11, ENSMUST00000125625.2
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCATGGAGGGAGTGGATTCTTAGGGACCTGTCTATAAGCTACGCCTaGTCTCCAGTTCCCCTATCTGCTCTCCTTCCTGTCCTGCCCAAG | + |
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Preference number: 1 (lower is better) Translates to: PWREWILRDLSISYA*SPVPLSALLPVLPK Trigger: CTTGGGCAGGACAGGAAGGAGAGCAGATAGGGGAACTGGAGAGCAGGCGTAGCTTATAGACAGGTCCCTAAGAATCCACTCCCTCCATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125625.2 |
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| 3UTR TCA 90 bp | TACCTGGGTAAATGTTTAACACAAGATGGAAAGTGGCACGTCGCGTaGGCAGGGCGTTTGGCAGGTCACAGAACGAGCTGCTGCTGTGAG | + |
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Preference number: 1 (lower is better) Translates to: YLGKCLTQDGKWHVA*AGRLAGHRTSCCCE Trigger: CTCACAGCAGCAGCTCGTTCTGTGACCTGCCAAACGCCCTGCTCACGCGACGTGCCACTTTCCATCTTGTGTTAAACATTTACCCAGGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| 3UTR GCA 90 bp | GGGAGGGACCCAGGAACTCTTCTCTCCATGCTCACACCCCATACCTaGACTTCATTATTCAGAAACACCCCATCTTCTTTCCAGCAGGCG | + |
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Preference number: 1 (lower is better) Translates to: GRDPGTLLSMLTPHT*TSLFRNTPSSFQQA Trigger: CGCCTGCTGGAAAGAAGATGGGGTGTTTCTGAATAATGAAGTGCAGGTATGGGGTGTGAGCATGGAGAGAAGAGTTCCTGGGTCCCTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| 3UTR CCA 90 bp | GGCGTACCCCCTTTGTTATTCAGACCCCTCTCCAATGATCTGTCATaGACTAACTCTACCTTCTTATCCACCAATGCTGTCTCTGGTCCC | + |
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Preference number: 1 (lower is better) Translates to: GVPPLLFRPLSNDLS*TNSTFLSTNAVSGP Trigger: GGGACCAGAGACAGCATTGGTGGATAAGAAGGTAGAGTTAGTCCATGACAGATCATTGGAGAGGGGTCTGAATAACAAAGGGGGTACGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| 3UTR GCA 90 bp | GTCATTATAAATCTATTGGGAGGGACCCAGGAACTCTTCTCTCCATaGTCACACCCCATACCTGCACTTCATTATTCAGAAACACCCCAT | + |
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Preference number: 1 (lower is better) Translates to: VIINLLGGTQELFSP*SHPIPALHYSETPH Trigger: ATGGGGTGTTTCTGAATAATGAAGTGCAGGTATGGGGTGTGAGCATGGAGAGAAGAGTTCCTGGGTCCCTCCCAATAGATTTATAATGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| 3UTR GCA 90 bp | CTTACTTCCTTTCATCTGCTCTCTCAAGTGTTTTGGTCACAGCCATaGAAAAGTAATGAACACAGCACTTATGATCAGGAACGAGGCTAT | + |
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Preference number: 1 (lower is better) Translates to: LTSFHLLSQVFWSQP*KSNEHSTYDQERGY Trigger: ATAGCCTCGTTCCTGATCATAAGTGCTGTGTTCATTACTTTTGCATGGCTGTGACCAAAACACTTGAGAGAGCAGATGAAAGGAAGTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125625.2 |
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| 3UTR-3UTR TCA 90 bp | CATGCTCACACCCCATACCTGCACTTCATTATTCAGAAACACCCCATCTTCTTTAAGTGGCACGTCGCGTaGGCAGGGCGTTTGGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: HAHTPYLHFIIQKHPIFFKWHVA*AGRLAG Trigger: ACCTGCCAAACGCCCTGCTCACGCGACGTGCCACTT...AAAGAAGATGGGGTGTTTCTGAATAATGAAGTGCAGGTATGGGGTGTGAGCATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| 3UTR-3UTR TCA 90 bp | TGGGAGGGACCCAGGAACTCTTCTCTCCATGCTCACACCCCATACCTGCACTTCGCTGGAAACCCCAATTaGCAACAAAAATACCCAGGT | + |
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Preference number: 2 (lower is better) Translates to: WEGPRNSSLHAHTPYLHFAGNPN*QQKYPG Trigger: ACCTGGGTATTTTTGTTGTCAATTGGGGTTTCCAGC...GAAGTGCAGGTATGGGGTGTGAGCATGGAGAGAAGAGTTCCTGGGTCCCTCCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| 3UTR-3UTR TCA 90 bp | TCTCTCCATGCTCACACCCCATACCTGCACTTCATTATTCAGAAACACCCCATCAGGCAGACGCAGCAGTaGGCAGCTGTTCTGGACTCT | + |
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Preference number: 2 (lower is better) Translates to: SLHAHTPYLHFIIQKHPIRQTQQ*AAVLDS Trigger: AGAGTCCAGAACAGCTGCTCACTGCTGCGTCTGCCT...GATGGGGTGTTTCTGAATAATGAAGTGCAGGTATGGGGTGTGAGCATGGAGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| 3UTR-3UTR CCA 90 bp | CTAGTCATTATAAATCTATTGGGAGGGACCCAGGAACTCTTCTCTCCATGCTCATCCAATGATCTGTCATaGACTAACTCTACCTTCTTA | + |
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Preference number: 2 (lower is better) Translates to: LVIINLLGGTQELFSPCSSNDLS*TNSTFL Trigger: TAAGAAGGTAGAGTTAGTCCATGACAGATCATTGGA...TGAGCATGGAGAGAAGAGTTCCTGGGTCCCTCCCAATAGATTTATAATGACTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| 3UTR CCA 72 bp | TGTCACACCTGGGAACTTGAGTGGCCGAGGTCTCCATaGAGGGAGTGGATTCTTAGGGACCTGTCTATAAGC | + |
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Preference number: 3 (lower is better) Translates to: CHTWELEWPRSP*REWILRDLSIS Trigger: GCTTATAGACAGGTCCCTAAGAATCCACTCCCTCCATGGAGACCTCGGCCACTCAAGTTCCCAGGTGTGACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125625.2 |
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| 3UTR TCA 72 bp | AAATGTTTAACACAAGATGGAAAGTGGCACGTCGCGTaGGCAGGGCGTTTGGCAGGTCACAGAACGAGCTGC | + |
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Preference number: 3 (lower is better) Translates to: KCLTQDGKWHVA*AGRLAGHRTSC Trigger: GCAGCTCGTTCTGTGACCTGCCAAACGCCCTGCTCACGCGACGTGCCACTTTCCATCTTGTGTTAAACATTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| 3UTR GCA 72 bp | GAGTGGATTCTTAGGGACCTGTCTATAAGCTACGCCTaGTCTCCAGTTCCCCTATCTGCTCTCCTTCCTGTC | + |
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Preference number: 3 (lower is better) Translates to: EWILRDLSISYA*SPVPLSALLPV Trigger: GACAGGAAGGAGAGCAGATAGGGGAACTGGAGAGCAGGCGTAGCTTATAGACAGGTCCCTAAGAATCCACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125625.2 |
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| 3UTR GCA 72 bp | AATCTATTGGGAGGGACCCAGGAACTCTTCTCTCCATaGTCACACCCCATACCTGCACTTCATTATTCAGAA | + |
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Preference number: 3 (lower is better) Translates to: NLLGGTQELFSP*SHPIPALHYSE Trigger: TTCTGAATAATGAAGTGCAGGTATGGGGTGTGAGCATGGAGAGAAGAGTTCCTGGGTCCCTCCCAATAGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| 3UTR CCA 72 bp | CCTTTGTTATTCAGACCCCTCTCCAATGATCTGTCATaGACTAACTCTACCTTCTTATCCACCAATGCTGTC | + |
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Preference number: 3 (lower is better) Translates to: PLLFRPLSNDLS*TNSTFLSTNAV Trigger: GACAGCATTGGTGGATAAGAAGGTAGAGTTAGTCCATGACAGATCATTGGAGAGGGGTCTGAATAACAAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| 3UTR GCA 72 bp | TTTCATCTGCTCTCTCAAGTGTTTTGGTCACAGCCATaGAAAAGTAATGAACACAGCACTTATGATCAGGAA | + |
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Preference number: 3 (lower is better) Translates to: FHLLSQVFWSQP*KSNEHSTYDQE Trigger: TTCCTGATCATAAGTGCTGTGTTCATTACTTTTGCATGGCTGTGACCAAAACACTTGAGAGAGCAGATGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125625.2 |
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| CDS-3UTR GCA 90 bp | TGTGTTAAGGTCATAATCATGGGACCTTGGCTGCGCCACCTGCTCCCCGCCACCTGCTCCAGCTGTGTGTaGCGTTCTTTATCTGACACT | + |
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Preference number: 4 (lower is better) Translates to: CVKVIIMGPWLRHLLPATCSSCV*RSLSDT Trigger: AGTGTCAGATAAAGAACGGCACACACAGCTGGAGCA...GGTGGCGGGGAGCAGGTGGCGCAGCCAAGGTCCCATGATTATGACCTTAACACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125625.2 |
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| CDS-3UTR CCA 90 bp | TGTGTTAAGGTCATAATCATGGGACCTTGGCTGCGCCACCTGCTCCCCGCCACCGCTTTGTGCTCTTGTTaGGTTTCACGGAGTAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: CVKVIIMGPWLRHLLPATALCSC*VSRSSG Trigger: TCCACTACTCCGTGAAACCCAACAAGAGCACAAAGC...GGTGGCGGGGAGCAGGTGGCGCAGCCAAGGTCCCATGATTATGACCTTAACACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125625.2 |
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| CDS-3UTR GCA 90 bp | TGTGTTAAGGTCATAATCATGGGACCTTGGCTGCGCCACCTGCTCCCCGCCACCACTTCCAAAGCCTGTTaGTTTGTGCTCTTGTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: CVKVIIMGPWLRHLLPATTSKAC*FVLLLG Trigger: ACCCAACAAGAGCACAAAGCAACAGGCTTTGGAAGT...GGTGGCGGGGAGCAGGTGGCGCAGCCAAGGTCCCATGATTATGACCTTAACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125625.2 |
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| CDS-3UTR TCA 90 bp | TGCTCACACCCCATACCTGCACTTCATTATTCAGAAACACCCCATCTTCTTTCCCCACGTCCTTCAGACTaGGCACTTCCAGAGAACCCC | + |
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Preference number: 4 (lower is better) Translates to: CSHPIPALHYSETPHLLSPRPSD*ALPENP Trigger: GGGGTTCTCTGGAAGTGCTCAGTCTGAAGGACGTGG...GGAAAGAAGATGGGGTGTTTCTGAATAATGAAGTGCAGGTATGGGGTGTGAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| CDS-3UTR GCA 90 bp | TGTGTTAAGGTCATAATCATGGGACCTTGGCTGCGCCACCTGCTCCCCGCCACCCCTTTAGTCAAAATCTaGTTGCAGATTTCAGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: CVKVIIMGPWLRHLLPATPLVKI*LQISVW Trigger: CCAGACTGAAATCTGCAAGCAGATTTTGACTAAAGG...GGTGGCGGGGAGCAGGTGGCGCAGCCAAGGTCCCATGATTATGACCTTAACACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000125625.2 |
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| CDS-3UTR CCA 90 bp | GGAACTAGAAAGGCAGACGCAGCAGTGAGCAGCTGTTCTGGACTCTGTATTTTAGCTTTGTGCTCTTGTTaGGTTTCACGGAGTAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: GTRKADAAVSSCSGLCILALCSC*VSRSSG Trigger: TCCACTACTCCGTGAAACCCAACAAGAGCACAAAGC...TAAAATACAGAGTCCAGAACAGCTGCTCACTGCTGCGTCTGCCTTTCTAGTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| CDS-3UTR CCA 90 bp | CTAGTCATTATAAATCTATTGGGAGGGACCCAGGAACTCTTCTCTCCATGCTCATTCTCTGAAGCAGCCTaGGTCGATGAGGCACACGAT | + |
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Preference number: 4 (lower is better) Translates to: LVIINLLGGTQELFSPCSFSEAA*VDEAHD Trigger: ATCGTGTGCCTCATCGACCCAGGCTGCTTCAGAGAA...TGAGCATGGAGAGAAGAGTTCCTGGGTCCCTCCCAATAGATTTATAATGACTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| CDS-3UTR GCA 90 bp | GGAACTAGAAAGGCAGACGCAGCAGTGAGCAGCTGTTCTGGACTCTGTATTTTAACTTCCAAAGCCTGTTaGTTTGTGCTCTTGTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: GTRKADAAVSSCSGLCILTSKAC*FVLLLG Trigger: ACCCAACAAGAGCACAAAGCAACAGGCTTTGGAAGT...TAAAATACAGAGTCCAGAACAGCTGCTCACTGCTGCGTCTGCCTTTCTAGTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| CDS-3UTR GCA 90 bp | CTAGTCATTATAAATCTATTGGGAGGGACCCAGGAACTCTTCTCTCCATGCTCAAAGCCTGTTGCTTTGTaGTCTTGTTGGGTTTCACGG | + |
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Preference number: 4 (lower is better) Translates to: LVIINLLGGTQELFSPCSKPVAL*SCWVSR Trigger: CCGTGAAACCCAACAAGAGCACAAAGCAACAGGCTT...TGAGCATGGAGAGAAGAGTTCCTGGGTCCCTCCCAATAGATTTATAATGACTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| CDS-3UTR GCA 90 bp | ACAACAAAAATACCCAGGTACCTGGGTAAATGTTTAACACAAGATGGAAAGTGGTGCTCCAGCTGTGTGTaGCGTTCTTTATCTGACACT | + |
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Preference number: 4 (lower is better) Translates to: TTKIPRYLGKCLTQDGKWCSSCV*RSLSDT Trigger: AGTGTCAGATAAAGAACGGCACACACAGCTGGAGCA...CCACTTTCCATCTTGTGTTAAACATTTACCCAGGTACCTGGGTATTTTTGTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| CDS-3UTR GCA 90 bp | TTGACAACAAAAATACCCAGGTACCTGGGTAAATGTTTAACACAAGATGGAAAGCCTTTAGTCAAAATCTaGTTGCAGATTTCAGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: LTTKIPRYLGKCLTQDGKPLVKI*LQISVW Trigger: CCAGACTGAAATCTGCAAGCAGATTTTGACTAAAGG...CTTTCCATCTTGTGTTAAACATTTACCCAGGTACCTGGGTATTTTTGTTGTCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| CDS-3UTR CAA 90 bp | TGTGTTAAGGTCATAATCATGGGACCTTGGCTGCGCCACCTGCTCCCCGCCACCTCTGGGTTCACACACTaGTCTGCCACAATGGTGGCG | + |
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Preference number: 5 (lower is better) Translates to: CVKVIIMGPWLRHLLPATSGFTH*SATMVA Trigger: CGCCACCATTGTGGCAGACAAGTGTGTGAACCCAGA...GGTGGCGGGGAGCAGGTGGCGCAGCCAAGGTCCCATGATTATGACCTTAACACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125625.2 |
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| CDS-3UTR CAA 90 bp | TGTGTTAAGGTCATAATCATGGGACCTTGGCTGCGCCACCTGCTCCCCGCCACCTTAGTCAAAATCTGCTaGCAGATTTCAGTCTGGTCG | + |
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Preference number: 5 (lower is better) Translates to: CVKVIIMGPWLRHLLPATLVKIC*QISVWS Trigger: CGACCAGACTGAAATCTGCAAGCAGATTTTGACTAA...GGTGGCGGGGAGCAGGTGGCGCAGCCAAGGTCCCATGATTATGACCTTAACACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125625.2 |
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| CDS-3UTR CAA 90 bp | ATCTATTGGGAGGGACCCAGGAACTCTTCTCTCCATGCTCACACCCCATACCTGTTAGTCAAAATCTGCTaGCAGATTTCAGTCTGGTCG | + |
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Preference number: 5 (lower is better) Translates to: IYWEGPRNSSLHAHTPYLLVKIC*QISVWS Trigger: CGACCAGACTGAAATCTGCAAGCAGATTTTGACTAA...CAGGTATGGGGTGTGAGCATGGAGAGAAGAGTTCCTGGGTCCCTCCCAATAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| CDS-3UTR CAA 90 bp | GGAACTAGAAAGGCAGACGCAGCAGTGAGCAGCTGTTCTGGACTCTGTATTTTACCAAAGCCTGTTGCTTaGTGCTCTTGTTGGGTTTCA | + |
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Preference number: 5 (lower is better) Translates to: GTRKADAAVSSCSGLCILPKPVA*CSCWVS Trigger: TGAAACCCAACAAGAGCACAAAGCAACAGGCTTTGG...TAAAATACAGAGTCCAGAACAGCTGCTCACTGCTGCGTCTGCCTTTCTAGTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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| CDS-3UTR CAA 90 bp | CAATTGACAACAAAAATACCCAGGTACCTGGGTAAATGTTTAACACAAGATGGATCTGGGTTCACACACTaGTCTGCCACAATGGTGGCG | + |
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Preference number: 5 (lower is better) Translates to: QLTTKIPRYLGKCLTQDGSGFTH*SATMVA Trigger: CGCCACCATTGTGGCAGACAAGTGTGTGAACCCAGA...TCCATCTTGTGTTAAACATTTACCCAGGTACCTGGGTATTTTTGTTGTCAATTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026387.11 |
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