Pregenerated sensors for SAYSD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045107Ensembl transcript IDs: ENSMUST00000059666.6
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCTGGGAAGATGGCTCAGCAGTTAAGAGCAGGCTGCTCTTGCAGATaGGCTGGTTACCAGAACCCACCACCATACAGAACTCCAATTCCA | + |
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Preference number: 1 (lower is better) Translates to: AGKMAQQLRAGCSCR*AGYQNPPPYRTPIP Trigger: TGGAATTGGAGTTCTGTATGGTGGTGGGTTCTGGTAACCAGCTCATCTGCAAGAGCAGCCTGCTCTTAACTGCTGAGCCATCTTCCCAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR CCA 90 bp | GAAGATGGCTCAGCAGTTAAGAGCAGGCTGCTCTTGCAGATGAGCTaGTTACCAGAACCCACCACCATACAGAACTCCAATTCCAGGCGA | + |
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Preference number: 1 (lower is better) Translates to: EDGSAVKSRLLLQMS*LPEPTTIQNSNSRR Trigger: TCGCCTGGAATTGGAGTTCTGTATGGTGGTGGGTTCTGGTAACCAGCTCATCTGCAAGAGCAGCCTGCTCTTAACTGCTGAGCCATCTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR TCA 90 bp | GAGATGGCTCAGTGGTTGAGAGCATTTGTTGCTCTCGCAGAAGACTaGGGTTCAGTTCCCAGCATGCACATGGTGGCTTACAACCATCCA | + |
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Preference number: 1 (lower is better) Translates to: EMAQWLRAFVALAED*GSVPSMHMVAYNHP Trigger: TGGATGGTTGTAAGCCACCATGTGCATGCTGGGAACTGAACCTCAGTCTTCTGCGAGAGCAACAAATGCTCTCAACCACTGAGCCATCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR TCA 90 bp | ATCCCAGCAACCACATGGTGGCTCACAACCATCGGTAATGAGATCTaGTGCCCTCTTCTGGTGTGTCTGAGACAGCTACAGTGTACTTAC | + |
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Preference number: 1 (lower is better) Translates to: IPATTWWLTTIGNEI*CPLLVCLRQLQCTY Trigger: GTAAGTACACTGTAGCTGTCTCAGACACACCAGAAGAGGGCATCAGATCTCATTACCGATGGTTGTGAGCCACCATGTGGTTGCTGGGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR CCA 90 bp | TTGCTCTCGCAGAAGACTGAGGTTCAGTTCCCAGCATGCACATGGTaGCTTACAACCATCCATAACTCAGTTCCAGAGGATCTGATGCTC | + |
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Preference number: 1 (lower is better) Translates to: LLSQKTEVQFPACTW*LTTIHNSVPEDLML Trigger: GAGCATCAGATCCTCTGGAACTGAGTTATGGATGGTTGTAAGCCACCATGTGCATGCTGGGAACTGAACCTCAGTCTTCTGCGAGAGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR GCA 90 bp | GAGCATTTGTTGCTCTCGCAGAAGACTGAGGTTCAGTTCCCAGCATaGACATGGTGGCTTACAACCATCCATAACTCAGTTCCAGAGGAT | + |
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Preference number: 1 (lower is better) Translates to: EHLLLSQKTEVQFPA*TWWLTTIHNSVPED Trigger: ATCCTCTGGAACTGAGTTATGGATGGTTGTAAGCCACCATGTGCATGCTGGGAACTGAACCTCAGTCTTCTGCGAGAGCAACAAATGCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR CCA 90 bp | TTGTTGCTCTCGCAGAAGACTGAGGTTCAGTTCCCAGCATGCACATaGTGGCTTACAACCATCCATAACTCAGTTCCAGAGGATCTGATG | + |
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Preference number: 1 (lower is better) Translates to: LLLSQKTEVQFPACT*WLTTIHNSVPEDLM Trigger: CATCAGATCCTCTGGAACTGAGTTATGGATGGTTGTAAGCCACCATGTGCATGCTGGGAACTGAACCTCAGTCTTCTGCGAGAGCAACAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR CCA 90 bp | ATTAATCTTTTTATTCATCAGAATGACTCACAGAAAAAGTATGTGTaGCCCAATTCCAATGAAACTAAACTCCACTGCTGTACTGGAAGA | + |
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Preference number: 1 (lower is better) Translates to: INLFIHQNDSQKKYV*PNSNETKLHCCTGR Trigger: TCTTCCAGTACAGCAGTGGAGTTTAGTTTCATTGGAATTGGGCCACACATACTTTTTCTGTGAGTCATTCTGATGAATAAAAAGATTAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR CAA 90 bp | TTCCAGGGCTGGGAAGATGGCTCAGCAGTTAAGAGCAGGCTGCTCTaGCAGATGAGCTGGTTACCAGAACCCACCACCATACAGAACTCC | + |
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Preference number: 2 (lower is better) Translates to: FQGWEDGSAVKSRLL*QMSWLPEPTTIQNS Trigger: GGAGTTCTGTATGGTGGTGGGTTCTGGTAACCAGCTCATCTGCAAGAGCAGCCTGCTCTTAACTGCTGAGCCATCTTCCCAGCCCTGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR-3UTR CCA 90 bp | CTCAGTTCCAGAGGATCTGATGCTCTCTTTGGCGCTCTGAGGGTTCCAGGCACATTCACACATTTAAGGTaGGGGCAGACCAGTTTCCCT | + |
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Preference number: 2 (lower is better) Translates to: LSSRGSDALFGALRVPGTFTHLR*GQTSFP Trigger: AGGGAAACTGGTCTGCCCCCACCTTAAATGTGTGAA...TGTGCCTGGAACCCTCAGAGCGCCAAAGAGAGCATCAGATCCTCTGGAACTGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR-3UTR TCA 90 bp | TTACCAGAACCCACCACCATACAGAACTCCAATTCCAGGCGATCTGACATCCTCGCACCAGCCCCACCCTaGGTGTCCTTTAGAGAAATT | + |
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Preference number: 2 (lower is better) Translates to: LPEPTTIQNSNSRRSDILAPAPP*VSFREI Trigger: AATTTCTCTAAAGGACACTCAGGGTGGGGCTGGTGC...GAGGATGTCAGATCGCCTGGAATTGGAGTTCTGTATGGTGGTGGGTTCTGGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR-3UTR TCA 90 bp | TATGTGTGGCCCAATTCCAATGAAACTAAACTCCACTGCTGTACTGGAAGACGAGGCTGCTCTTGCAGATaGGCTGGTTACCAGAACCCA | + |
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Preference number: 2 (lower is better) Translates to: YVWPNSNETKLHCCTGRRGCSCR*AGYQNP Trigger: TGGGTTCTGGTAACCAGCTCATCTGCAAGAGCAGCC...TCGTCTTCCAGTACAGCAGTGGAGTTTAGTTTCATTGGAATTGGGCCACACATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR-3UTR TCA 90 bp | TTACCAGAACCCACCACCATACAGAACTCCAATTCCAGGCGATCTGACATCCTCGGGTTAAGGGGAAAATaGAAGATGGTCACAGGTAGT | + |
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Preference number: 2 (lower is better) Translates to: LPEPTTIQNSNSRRSDILGLRGK*KMVTGS Trigger: ACTACCTGTGACCATCTTTCATTTTCCCCTTAACCC...GAGGATGTCAGATCGCCTGGAATTGGAGTTCTGTATGGTGGTGGGTTCTGGTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR-3UTR CCA 90 bp | GCTCTTCTTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAAGAGAGATGGCTCAGTaGTTGAGAGCATTTGTTGCT | + |
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Preference number: 2 (lower is better) Translates to: ALLEGPEFKSQQPHGGSQREMAQ*LRAFVA Trigger: AGCAACAAATGCTCTCAACCACTGAGCCATCTCTCT...TTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAAGAAGAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR-3UTR CCA 90 bp | CAGCAACCACATGGTGGCTCACAACCATCGGTAATGAGATCTGATGCCCTCTTCGGGGAAAATGAAAGATaGTCACAGGTAGTATATGGG | + |
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Preference number: 2 (lower is better) Translates to: QQPHGGSQPSVMRSDALFGENER*SQVVYG Trigger: CCCATATACTACCTGTGACCATCTTTCATTTTCCCC...GAAGAGGGCATCAGATCTCATTACCGATGGTTGTGAGCCACCATGTGGTTGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR-3UTR TCA 90 bp | TATGTGTGGCCCAATTCCAATGAAACTAAACTCCACTGCTGTACTGGAAGACGAACGGCAATTGAAACATaGAAAGCAAGGGCCGGGAAA | + |
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Preference number: 2 (lower is better) Translates to: YVWPNSNETKLHCCTGRRTAIET*KARAGK Trigger: TTTCCCGGCCCTTGCTTTTCATGTTTCAATTGCCGT...TCGTCTTCCAGTACAGCAGTGGAGTTTAGTTTCATTGGAATTGGGCCACACATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR-3UTR CCA 90 bp | CCATACAGAACTCCAATTCCAGGCGATCTGACATCCTCAGGCACATGGTACACAAGCCTCCTTCTTTTATaGCTTTTATATACAGCACCA | + |
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Preference number: 2 (lower is better) Translates to: PYRTPIPGDLTSSGTWYTSLLLL*LLYTAP Trigger: TGGTGCTGTATATAAAAGCCATAAAAGAAGGAGGCT...TGTGTACCATGTGCCTGAGGATGTCAGATCGCCTGGAATTGGAGTTCTGTATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR-3UTR CCA 90 bp | TTACCAGAACCCACCACCATACAGAACTCCAATTCCAGGCGATCTGACATCCTCTCACCTAAATCAAAGTaGAGTTCAAAGATGAAACTG | + |
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Preference number: 2 (lower is better) Translates to: LPEPTTIQNSNSRRSDILSPKSK*SSKMKL Trigger: CAGTTTCATCTTTGAACTCCACTTTGATTTAGGTGA...GAGGATGTCAGATCGCCTGGAATTGGAGTTCTGTATGGTGGTGGGTTCTGGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR TCA 72 bp | ATGGCTCAGCAGTTAAGAGCAGGCTGCTCTTGCAGATaGGCTGGTTACCAGAACCCACCACCATACAGAACT | + |
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Preference number: 3 (lower is better) Translates to: MAQQLRAGCSCR*AGYQNPPPYRT Trigger: AGTTCTGTATGGTGGTGGGTTCTGGTAACCAGCTCATCTGCAAGAGCAGCCTGCTCTTAACTGCTGAGCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR TCA 72 bp | GCCCACAGACAGAAACATACAGGGTTCTACGGCAATTaGAACATGAAAAGCAAGGGCCGGGAAAGTAACTCC | + |
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Preference number: 3 (lower is better) Translates to: AHRQKHTGFYGN*NMKSKGRESNS Trigger: GGAGTTACTTTCCCGGCCCTTGCTTTTCATGTTTCAATTGCCGTAGAACCCTGTATGTTTCTGTCTGTGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR GCA 72 bp | TTGCTCTCGCAGAAGACTGAGGTTCAGTTCCCAGCATaGACATGGTGGCTTACAACCATCCATAACTCAGTT | + |
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Preference number: 3 (lower is better) Translates to: LLSQKTEVQFPA*TWWLTTIHNSV Trigger: AACTGAGTTATGGATGGTTGTAAGCCACCATGTGCATGCTGGGAACTGAACCTCAGTCTTCTGCGAGAGCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR TCA 72 bp | TCAGTTCCAGAGGATCTGATGCTCTCTTTGGCGCTCTaGGGGTTCCAGGCACACACATGGTATATCTATATA | + |
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Preference number: 3 (lower is better) Translates to: SVPEDLMLSLAL*GFQAHTWYIYI Trigger: TATATAGATATACCATGTGTGTGCCTGGAACCCTCAGAGCGCCAAAGAGAGCATCAGATCCTCTGGAACTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR GCA 72 bp | TATGTGTGGCCCAATTCCAATGAAACTAAACTCCACTaGTGTACTGGAAGACGAAATAACACCCAAGCCAGG | + |
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Preference number: 3 (lower is better) Translates to: YVWPNSNETKLH*CTGRRNNTQAR Trigger: CCTGGCTTGGGTGTTATTTCGTCTTCCAGTACAGCAGTGGAGTTTAGTTTCATTGGAATTGGGCCACACATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR TCA 72 bp | AGAGAAATTCACCTAAATCAAAGTGGAGTTCAAAGATaGAACTGCAGCAGGTCAGGGGGAAAGTGGAGGACA | + |
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Preference number: 3 (lower is better) Translates to: REIHLNQSGVQR*NCSRSGGKWRT Trigger: TGTCCTCCACTTTCCCCCTGACCTGCTGCAGTTTCATCTTTGAACTCCACTTTGATTTAGGTGAATTTCTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR CCA 72 bp | TATATACATTTGGACAAAACATTCACACATTTAAGGTaGGGGCAGACCAGTTTCCCTGGCCTGGAACTTAGC | + |
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Preference number: 3 (lower is better) Translates to: YIHLDKTFTHLR*GQTSFPGLELS Trigger: GCTAAGTTCCAGGCCAGGGAAACTGGTCTGCCCCCACCTTAAATGTGTGAATGTTTTGTCCAAATGTATATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| 3UTR CCA 72 bp | TTTATTCATCAGAATGACTCACAGAAAAAGTATGTGTaGCCCAATTCCAATGAAACTAAACTCCACTGCTGT | + |
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Preference number: 3 (lower is better) Translates to: FIHQNDSQKKYV*PNSNETKLHCC Trigger: ACAGCAGTGGAGTTTAGTTTCATTGGAATTGGGCCACACATACTTTTTCTGTGAGTCATTCTGATGAATAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS-3UTR TCA 90 bp | CTCAGTTCCAGAGGATCTGATGCTCTCTTTGGCGCTCTGAGGGTTCCAGGCACACTTCACAGCCCGGGTTaGACACAGAGTAGGCGCTCT | + |
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Preference number: 4 (lower is better) Translates to: LSSRGSDALFGALRVPGTLHSPG*TQSRRS Trigger: AGAGCGCCTACTCTGTGTTCAACCCGGGCTGTGAAG...TGTGCCTGGAACCCTCAGAGCGCCAAAGAGAGCATCAGATCCTCTGGAACTGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS-3UTR CCA 90 bp | CCATACAGAACTCCAATTCCAGGCGATCTGACATCCTCAGGCACATGGTACACAGCAGTCAGCGTGCCCTaGATGGCTTCACAGCCCGGG | + |
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Preference number: 4 (lower is better) Translates to: PYRTPIPGDLTSSGTWYTAVSVP*MASQPG Trigger: CCCGGGCTGTGAAGCCATCCAGGGCACGCTGACTGC...TGTGTACCATGTGCCTGAGGATGTCAGATCGCCTGGAATTGGAGTTCTGTATGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS-3UTR GCA 90 bp | CCATACAGAACTCCAATTCCAGGCGATCTGACATCCTCAGGCACATGGTACACAGCAGAGGGACTGCTGTaGTCTCAGGGAGCTGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: PYRTPIPGDLTSSGTWYTAEGLL*SQGAAG Trigger: GCCAGCAGCTCCCTGAGAGCACAGCAGTCCCTCTGC...TGTGTACCATGTGCCTGAGGATGTCAGATCGCCTGGAATTGGAGTTCTGTATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS-3UTR GCA 90 bp | CAGGTCAGGGGGAAAGTGGAGGACATGACCACCCTGCAAGCTGTCCTTTGTCCTCTGAGCTGTAACTCTTaGTCCAGCTGCTCAGCAGTC | + |
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Preference number: 4 (lower is better) Translates to: QVRGKVEDMTTLQAVLCPLSCNS*SSCSAV Trigger: GACTGCTGAGCAGCTGGAGCAAGAGTTACAGCTCAG...AGGACAAAGGACAGCTTGCAGGGTGGTCATGTCCTCCACTTTCCCCCTGACCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS-3UTR GCA 90 bp | CCATACAGAACTCCAATTCCAGGCGATCTGACATCCTCAGGCACATGGTACACAGCTCAGCAGTCAGCGTaGCCTGGATGGCTTCACAGC | + |
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Preference number: 4 (lower is better) Translates to: PYRTPIPGDLTSSGTWYTAQQSA*PGWLHS Trigger: GCTGTGAAGCCATCCAGGGCACGCTGACTGCTGAGC...TGTGTACCATGTGCCTGAGGATGTCAGATCGCCTGGAATTGGAGTTCTGTATGG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS-3UTR CCA 90 bp | CTCAGTTCCAGAGGATCTGATGCTCTCTTTGGCGCTCTGAGGGTTCCAGGCACATTAGTCAGGAAAGACTaGCGGCAGGAGGAAGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: LSSRGSDALFGALRVPGTLVRKD*RQEEGR Trigger: TCTGCCTTCCTCCTGCCGCCAGTCTTTCCTGACTAA...TGTGCCTGGAACCCTCAGAGCGCCAAAGAGAGCATCAGATCCTCTGGAACTGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS-3UTR CCA 90 bp | CAGCAACCACATGGTGGCTCACAACCATCGGTAATGAGATCTGATGCCCTCTTCGATAGGAGGAACAGCTaGGGCTGGTCCTACTTCCCT | + |
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Preference number: 4 (lower is better) Translates to: QQPHGGSQPSVMRSDALFDRRNS*GWSYFP Trigger: AGGGAAGTAGGACCAGCCCCAGCTGTTCCTCCTATC...GAAGAGGGCATCAGATCTCATTACCGATGGTTGTGAGCCACCATGTGGTTGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS-3UTR CCA 90 bp | AATGAGACAAACCAGCCTCCTTCTTTTATGGCTTTTATATACAGCACCAGCCCCAGGAACAGCTGGGGCTaGTCCTACTTCCCTGAGGGG | + |
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Preference number: 4 (lower is better) Translates to: NETNQPPSFMAFIYSTSPRNSWG*SYFPEG Trigger: CCCCTCAGGGAAGTAGGACCAGCCCCAGCTGTTCCT...GGGGCTGGTGCTGTATATAAAAGCCATAAAAGAAGGAGGCTGGTTTGTCTCATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS-3UTR CCA 90 bp | ATTCCAATGAAACTAAACTCCACTGCTGTACTGGAAGACGAAATAACACCCAAGCTTCCTGAGGCTGGTTaGGCTGAGCCTGAGCGATGG | + |
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Preference number: 4 (lower is better) Translates to: IPMKLNSTAVLEDEITPKLPEAG*AEPERW Trigger: CCATCGCTCAGGCTCAGCCCAACCAGCCTCAGGAAG...CTTGGGTGTTATTTCGTCTTCCAGTACAGCAGTGGAGTTTAGTTTCATTGGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS-3UTR CCA 90 bp | AGTTCAAAGATGAAACTGCAGCAGGTCAGGGGGAAAGTGGAGGACATGACCACCACATCCAATAGAACATaGACAGGACAAAATAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: SSKMKLQQVRGKVEDMTTTSNRT*TGQNKP Trigger: TGGCTTATTTTGTCCTGTCCATGTTCTATTGGATGT...GGTGGTCATGTCCTCCACTTTCCCCCTGACCTGCTGCAGTTTCATCTTTGAACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS TCA 90 bp | GTCGCCGCCGCTGGCTCCGCCTTCGCTCCCGAGGTCTGTACGCTCTaGCTGGACGTGGAAGGCTGGGCTACCAGACTGGCCCGTTTGCGG | + |
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Preference number: 5 (lower is better) Translates to: VAAAGSAFAPEVCTL*LDVEGWATRLARLR Trigger: CCGCAAACGGGCCAGTCTGGTAGCCCAGCCTTCCACGTCCAGTCAGAGCGTACAGACCTCGGGAGCGAAGGCGGAGCCAGCGGCGGCGAC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS CCA 90 bp | TGGCGGGGTTGGCTTTCCGTTTCAGGAAGCGTGTCAGCCAGCCCGTaGCTGTCTTTGGGGTCGCCGCCGCTGGCTCCGCCTTCGCTCCCG | + |
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Preference number: 5 (lower is better) Translates to: WRGWLSVSGSVSASP*LSLGSPPLAPPSLP Trigger: CGGGAGCGAAGGCGGAGCCAGCGGCGGCGACCCCAAAGACAGCCACGGGCTGGCTGACACGCTTCCTGAAACGGAAAGCCAACCCCGCCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS CCA 90 bp | GGCTTTCCGTTTCAGGAAGCGTGTCAGCCAGCCCGTGGCTGTCTTTaGGGTCGCCGCCGCTGGCTCCGCCTTCGCTCCCGAGGTCTGTAC | + |
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Preference number: 5 (lower is better) Translates to: GFPFQEACQPARGCL*GRRRWLRLRSRGLY Trigger: GTACAGACCTCGGGAGCGAAGGCGGAGCCAGCGGCGGCGACCCCAAAGACAGCCACGGGCTGGCTGACACGCTTCCTGAAACGGAAAGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS TCA 90 bp | GATAGGAGGAACAGCTGGGGCTGGTCCTACTTCCCTGAGGGGGTCTaGGCTGTAACTCTTGCTCCAGCTGCTCAGCAGTCAGCGTGCCCT | + |
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Preference number: 5 (lower is better) Translates to: DRRNSWGWSYFPEGV*AVTLAPAAQQSACP Trigger: AGGGCACGCTGACTGCTGAGCAGCTGGAGCAAGAGTTACAGCTCAGACCCCCTCAGGGAAGTAGGACCAGCCCCAGCTGTTCCTCCTATC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS CAA 72 bp | GTTTCAGGAAGCGTGTCAGCCAGCCCGTGGCTGTCTTaGGGGTCGCCGCCGCTGGCTCCGCCTTCGCTCCCG | + |
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Preference number: 6 (lower is better) Translates to: VSGSVSASPWLS*GSPPLAPPSLP Trigger: CGGGAGCGAAGGCGGAGCCAGCGGCGGCGACCCCAAAGACAGCCACGGGCTGGCTGACACGCTTCCTGAAAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS CCA 72 bp | TTTCAGGAAGCGTGTCAGCCAGCCCGTGGCTGTCTTTaGGGTCGCCGCCGCTGGCTCCGCCTTCGCTCCCGA | + |
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Preference number: 6 (lower is better) Translates to: FQEACQPARGCL*GRRRWLRLRSR Trigger: TCGGGAGCGAAGGCGGAGCCAGCGGCGGCGACCCCAAAGACAGCCACGGGCTGGCTGACACGCTTCCTGAAA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS TCA 72 bp | GCTGGCTCCGCCTTCGCTCCCGAGGTCTGTACGCTCTaGCTGGACGTGGAAGGCTGGGCTACCAGACTGGCC | + |
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Preference number: 6 (lower is better) Translates to: AGSAFAPEVCTL*LDVEGWATRLA Trigger: GGCCAGTCTGGTAGCCCAGCCTTCCACGTCCAGTCAGAGCGTACAGACCTCGGGAGCGAAGGCGGAGCCAGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS CCA 72 bp | CGCTCTGACTGGACGTGGAAGGCTGGGCTACCAGACTaGCCCGTTTGCGGGCCTCCCGGAACTCGGCTAACC | + |
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Preference number: 6 (lower is better) Translates to: RSDWTWKAGLPD*PVCGPPGTRLT Trigger: GGTTAGCCGAGTTCCGGGAGGCCCGCAAACGGGCCAGTCTGGTAGCCCAGCCTTCCACGTCCAGTCAGAGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS CAA 90 bp | TGGCTTTCCGTTTCAGGAAGCGTGTCAGCCAGCCCGTGGCTGTCTTaGGGGTCGCCGCCGCTGGCTCCGCCTTCGCTCCCGAGGTCTGTA | + |
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Preference number: 6 (lower is better) Translates to: WLSVSGSVSASPWLS*GSPPLAPPSLPRSV Trigger: TACAGACCTCGGGAGCGAAGGCGGAGCCAGCGGCGGCGACCCCAAAGACAGCCACGGGCTGGCTGACACGCTTCCTGAAACGGAAAGCCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS GCA 72 bp | CAGGAAAGACTGGCGGCAGGAGGAAGGCAGAGGGACTaGTGTGCTCTCAGGGAGCTGCTGGCCTGCTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: QERLAAGGRQRD*CALRELLACFL Trigger: CAGGAAGCAGGCCAGCAGCTCCCTGAGAGCACAGCAGTCCCTCTGCCTTCCTCCTGCCGCCAGTCTTTCCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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| CDS TCA 72 bp | CAGTCAGCGTGCCCTGGATGGCTTCACAGCCCGGGTTaGACACAGAGTAGGCGCTCTTCTCCCCTTCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: QSACPGWLHSPG*TQSRRSSPLLS Trigger: AGAAAGAAGGGGAGAAGAGCGCCTACTCTGTGTTCAACCCGGGCTGTGAAGCCATCCAGGGCACGCTGACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059666.6 |
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