Pregenerated sensors for SAXO2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038570Ensembl transcript IDs: ENSMUST00000056728.5, ENSMUST00000126478.2, ENSMUST00000156720.8, ENSMUST00000207693.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCCTTCAGATATGCCTGTTAAAGAATAATCTTGGATCAGAAGACTaGCACAGGAGGACTGCAAGTTCCAGGGTAGCCTGTGCTAAACAG | + |
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Preference number: 1 (lower is better) Translates to: SLQICLLKNNLGSED*HRRTASSRVACAKQ Trigger: CTGTTTAGCACAGGCTACCCTGGAACTTGCAGTCCTCCTGTGTCAGTCTTCTGATCCAAGATTATTCTTTAACAGGCATATCTGAAGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056728.5 ENSMUST00000207693.2 |
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| 3UTR CCA 90 bp | AACAAGGTAGTTATAGCCCTCATAAATGAACAATGTTTCTGGATGTaGCCACTGAATGAACACATACCTAGGTTTATCCTGAAAATTTTG | + |
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Preference number: 1 (lower is better) Translates to: NKVVIALINEQCFWM*PLNEHIPRFILKIL Trigger: CAAAATTTTCAGGATAAACCTAGGTATGTGTTCATTCAGTGGCCACATCCAGAAACATTGTTCATTTATGAGGGCTATAACTACCTTGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| 3UTR-3UTR TCA 90 bp | AAGACCCTGAAAGTCATTCCGGTGAGTGGTGAGATCCTCAAAAGGCTGGTCAGTATCCTGAAATGTAGTTaGGTTTCCGAATTTCACATC | + |
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Preference number: 2 (lower is better) Translates to: KTLKVIPVSGEILKRLVSILKCS*VSEFHI Trigger: GATGTGAAATTCGGAAACTCAACTACATTTCAGGAT...ACTGACCAGCCTTTTGAGGATCTCACCACTCACCGGAATGACTTTCAGGGTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207693.2 |
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| 3UTR-3UTR GCA 90 bp | ATTTTCAAATATATAACCAGGAGGAGAAGGATAGCTAGCTGGGCAGATTTCCTGCCACAGGCGTGTGTATaGAAGAGGTTGCTTACAGTG | + |
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Preference number: 2 (lower is better) Translates to: IFKYITRRRRIASWADFLPQACV*KRLLTV Trigger: CACTGTAAGCAACCTCTTGCATACACACGCCTGTGG...CAGGAAATCTGCCCAGCTAGCTATCCTTCTCCTCCTGGTTATATATTTGAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207693.2 |
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| 3UTR CAA 90 bp | TCCTATAGGACATTTCCTCTTCAAGCCACAATGTCTCTTGCTATTTaGAACAGGGCAAGAAACAGAGCAGTAGTCTCTGACATCACCAAC | + |
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Preference number: 2 (lower is better) Translates to: SYRTFPLQATMSLAI*NRARNRAVVSDITN Trigger: GTTGGTGATGTCAGAGACTACTGCTCTGTTTCTTGCCCTGTTCAAAATAGCAAGAGACATTGTGGCTTGAAGAGGAAATGTCCTATAGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056728.5 ENSMUST00000207693.2 |
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| 3UTR-3UTR TCA 90 bp | ATTTTCAAATATATAACCAGGAGGAGAAGGATAGCTAGCTGGGCAGATTTCCTGACTCTGCCACTTTCTTaGCTTTGGGTGGTGGGATTT | + |
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Preference number: 2 (lower is better) Translates to: IFKYITRRRRIASWADFLTLPLS*LWVVGF Trigger: AAATCCCACCACCCAAAGTCAAGAAAGTGGCAGAGT...CAGGAAATCTGCCCAGCTAGCTATCCTTCTCCTCCTGGTTATATATTTGAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207693.2 |
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| 3UTR-3UTR GCA 90 bp | GGGCAGATGCCTCTTACAAACACACATTACTCATTTATGACTTTAGTCAAAGCACCACAGGCGTGTGTATaGAAGAGGTTGCTTACAGTG | + |
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Preference number: 2 (lower is better) Translates to: GQMPLTNTHYSFMTLVKAPQACV*KRLLTV Trigger: CACTGTAAGCAACCTCTTGCATACACACGCCTGTGG...TGCTTTGACTAAAGTCATAAATGAGTAATGTGTGTTTGTAAGAGGCATCTGCCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| 3UTR-3UTR TCA 90 bp | ACAGGCGTGTGTATGCAAGAGGTTGCTTACAGTGGCTCAAATATAAACCGAAGATCACCAACCAAAACTTaGCTTGTCCTATTCTCTGTA | + |
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Preference number: 2 (lower is better) Translates to: TGVCMQEVAYSGSNINRRSPTKT*LVLFSV Trigger: TACAGAGAATAGGACAAGTCAAGTTTTGGTTGGTGA...TCTTCGGTTTATATTTGAGCCACTGTAAGCAACCTCTTGCATACACACGCCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056728.5 ENSMUST00000207693.2 |
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| 3UTR-3UTR TCA 90 bp | ACAGGCGTGTGTATGCAAGAGGTTGCTTACAGTGGCTCAAATATAAACCGAAGAATATTCTTTAACAGATaGACCACAGGCGTGTGTATG | + |
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Preference number: 2 (lower is better) Translates to: TGVCMQEVAYSGSNINRRIFFNR*TTGVCM Trigger: CATACACACGCCTGTGGTTCATCTGTTAAAGAATAT...TCTTCGGTTTATATTTGAGCCACTGTAAGCAACCTCTTGCATACACACGCCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| 3UTR-3UTR TCA 90 bp | TCTAGGTCCTTTACTGGTATCTCTTCCCCGTCCTTCTTTGCACTTTATACTTTCCTTATAGGGTGTTTATaGAGCTATAGTGGGCAGATG | + |
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Preference number: 2 (lower is better) Translates to: SRSFTGISSPSFFALYTFLIGCL*SYSGQM Trigger: CATCTGCCCACTATAGCTTCATAAACACCCTATAAG...GAAAGTATAAAGTGCAAAGAAGGACGGGGAAGAGATACCAGTAAAGGACCTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| 3UTR-3UTR GCA 90 bp | AGGACATTTCCTCTTCAAGCCACAATGTCTCTTGCTATTTTGAACAGGGCAAGAAGCCACAATGTCTCTTaGTATTTTGAACAGGGCAAG | + |
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Preference number: 2 (lower is better) Translates to: RTFPLQATMSLAILNRARSHNVS*YFEQGK Trigger: CTTGCCCTGTTCAAAATAGCAAGAGACATTGTGGCT...TCTTGCCCTGTTCAAAATAGCAAGAGACATTGTGGCTTGAAGAGGAAATGTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056728.5 ENSMUST00000207693.2 |
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| 3UTR-3UTR GCA 90 bp | TATATAACCAGGAGGAGAAGGATAGCTAGCTGGGCAGATTTCCTGTTTCTTCGGCTTGGAAAGGAAAATTaGTTTGCCTTCTGTGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: YITRRRRIASWADFLFLRLGKEN*FAFCEK Trigger: TTTCTCACAGAAGGCAAAGCAATTTTCCTTTCCAAG...CCGAAGAAACAGGAAATCTGCCCAGCTAGCTATCCTTCTCCTCCTGGTTATATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207693.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGGCGTGTGTATGCAAGAGGTTGCTTACAGTGGCTCAAATATAAACCGAAGACAATGTTTCTGGATGTaGCCACTGAATGAACACATA | + |
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Preference number: 2 (lower is better) Translates to: TGVCMQEVAYSGSNINRRQCFWM*PLNEHI Trigger: TATGTGTTCATTCAGTGGCCACATCCAGAAACATTG...TCTTCGGTTTATATTTGAGCCACTGTAAGCAACCTCTTGCATACACACGCCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| 3UTR-3UTR TCA 90 bp | TCTAGGTCCTTTACTGGTATCTCTTCCCCGTCCTTCTTTGCACTTTATACTTTCTCACCAACCAAAACTTaGCTTGTCCTATTCTCTGTA | + |
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Preference number: 2 (lower is better) Translates to: SRSFTGISSPSFFALYTFSPTKT*LVLFSV Trigger: TACAGAGAATAGGACAAGTCAAGTTTTGGTTGGTGA...GAAAGTATAAAGTGCAAAGAAGGACGGGGAAGAGATACCAGTAAAGGACCTAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| 3UTR-3UTR GCA 90 bp | ATTTTCAAATATATAACCAGGAGGAGAAGGATAGCTAGCTGGGCAGATTTCCTGTGGTATAGGCAGGTCTaGAGATTTTTGCAGTTTCAC | + |
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Preference number: 2 (lower is better) Translates to: IFKYITRRRRIASWADFLWYRQV*RFLQFH Trigger: GTGAAACTGCAAAAATCTGCAGACCTGCCTATACCA...CAGGAAATCTGCCCAGCTAGCTATCCTTCTCCTCCTGGTTATATATTTGAAAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000207693.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGGCGTGTGTATGCAAGAGGTTGCTTACAGTGGCTCAAATATAAACCGAAGAAATGAACAATGTTTCTaGATGTGGCCACTGAATGAA | + |
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Preference number: 2 (lower is better) Translates to: TGVCMQEVAYSGSNINRRNEQCF*MWPLNE Trigger: TTCATTCAGTGGCCACATCCAGAAACATTGTTCATT...TCTTCGGTTTATATTTGAGCCACTGTAAGCAACCTCTTGCATACACACGCCTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| 3UTR CAA 90 bp | ATGCTATTTCTAGGTCCTTTACTGGTATCTCTTCCCCGTCCTTCTTaGCACTTTATACTTTCAGTAATGAACAAGGTAGTTATAGCCCTC | + |
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Preference number: 2 (lower is better) Translates to: MLFLGPLLVSLPRPS*HFILSVMNKVVIAL Trigger: GAGGGCTATAACTACCTTGTTCATTACTGAAAGTATAAAGTGCAAAGAAGGACGGGGAAGAGATACCAGTAAAGGACCTAGAAATAGCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| 3UTR-3UTR TCA 90 bp | AACAAGGTAGTTATAGCCCTCATAAATGAACAATGTTTCTGGATGTGGCCACTGCCCAACAAACTTTTGTaGGGTAGGCAGAATCAATAT | + |
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Preference number: 2 (lower is better) Translates to: NKVVIALINEQCFWMWPLPNKLL*GRQNQY Trigger: ATATTGATTCTGCCTACCTCACAAAAGTTTGTTGGG...CAGTGGCCACATCCAGAAACATTGTTCATTTATGAGGGCTATAACTACCTTGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| 3UTR-3UTR CCA 90 bp | AACAAGGTAGTTATAGCCCTCATAAATGAACAATGTTTCTGGATGTGGCCACTGATAGTCCTTGCTGTATaGAGACCAAGTAATGAGTAT | + |
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Preference number: 2 (lower is better) Translates to: NKVVIALINEQCFWMWPLIVLAV*RPSNEY Trigger: ATACTCATTACTTGGTCTCCATACAGCAAGGACTAT...CAGTGGCCACATCCAGAAACATTGTTCATTTATGAGGGCTATAACTACCTTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| 3UTR-3UTR CAA 90 bp | GTCAGCATGTATAAATGGGCGTACCTATCATTTAGCCTTCAGATATGCCTGTTAGGGCCTACAGAACACTaGACCACAGAGCAGGGCTTA | + |
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Preference number: 3 (lower is better) Translates to: VSMYKWAYLSFSLQICLLGPTEH*TTEQGL Trigger: TAAGCCCTGCTCTGTGGTCAAGTGTTCTGTAGGCCC...TAACAGGCATATCTGAAGGCTAAATGATAGGTACGCCCATTTATACATGCTGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207693.2 |
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| 3UTR-3UTR CAA 90 bp | ACAATGTCTCTTGCTATTTTGAACAGGGCAAGAAACAGAGCAGTAGTCTCTGACTACTCTGCCACTTTCTaGACTTTGGGTGGTGGGATT | + |
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Preference number: 3 (lower is better) Translates to: TMSLAILNRARNRAVVSDYSATF*TLGGGI Trigger: AATCCCACCACCCAAAGTCAAGAAAGTGGCAGAGTA...GTCAGAGACTACTGCTCTGTTTCTTGCCCTGTTCAAAATAGCAAGAGACATTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207693.2 |
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| 3UTR TCA 72 bp | TATCTCCTGGGGAACATAGTCATCCTGAAATGTAGTTaGGTTTCCGAATTTCACATCTGGGGGATGGTAAGC | + |
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Preference number: 3 (lower is better) Translates to: YLLGNIVILKCS*VSEFHIWGMVS Trigger: GCTTACCATCCCCCAGATGTGAAATTCGGAAACTCAACTACATTTCAGGATGACTATGTTCCCCAGGAGATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000207693.2 |
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| 3UTR-3UTR CAA 90 bp | ACAGGCGTGTGTATGCAAGAGGTTGCTTACAGTGGCTCAAATATAAACCGAAGATGTGTATGCAAGAGGTaGCTTACAGTGGCTCAAATA | + |
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Preference number: 3 (lower is better) Translates to: TGVCMQEVAYSGSNINRRCVCKR*LTVAQI Trigger: TATTTGAGCCACTGTAAGCAACCTCTTGCATACACA...TCTTCGGTTTATATTTGAGCCACTGTAAGCAACCTCTTGCATACACACGCCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056728.5 ENSMUST00000207693.2 |
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| 3UTR CCA 72 bp | TCCGAATTTCACATCTGGGGGATGGTAAGCTTGCTCTaGTTTACACAGTTCACATTTCTGAATATCCCAAGA | + |
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Preference number: 3 (lower is better) Translates to: SEFHIWGMVSLL*FTQFTFLNIPR Trigger: TCTTGGGATATTCAGAAATGTGAACTGTGTAAACCAGAGCAAGCTTACCATCCCCCAGATGTGAAATTCGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000156720.8 ENSMUST00000207693.2 |
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| 3UTR-3UTR CAA 90 bp | ACAGGCGTGTGTATGCAAGAGGTTGCTTACAGTGGCTCAAATATAAACCGAAGAATCACCAACCAAAACTaGACTTGTCCTATTCTCTGT | + |
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Preference number: 3 (lower is better) Translates to: TGVCMQEVAYSGSNINRRITNQN*TCPILC Trigger: ACAGAGAATAGGACAAGTCAAGTTTTGGTTGGTGAT...TCTTCGGTTTATATTTGAGCCACTGTAAGCAACCTCTTGCATACACACGCCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056728.5 ENSMUST00000207693.2 |
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| 3UTR CCA 72 bp | AACCACAGGCGTGTGTATGCAAGAGGTTGCTTACAGTaGCTCAAATATAAACCGAAGATATCAGTACTTGAA | + |
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Preference number: 3 (lower is better) Translates to: NHRRVYARGCLQ*LKYKPKISVLE Trigger: TTCAAGTACTGATATCTTCGGTTTATATTTGAGCCACTGTAAGCAACCTCTTGCATACACACGCCTGTGGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| 3UTR-3UTR CAA 90 bp | TCTAGGTCCTTTACTGGTATCTCTTCCCCGTCCTTCTTTGCACTTTATACTTTCATCACCAACCAAAACTaGACTTGTCCTATTCTCTGT | + |
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Preference number: 3 (lower is better) Translates to: SRSFTGISSPSFFALYTFITNQN*TCPILC Trigger: ACAGAGAATAGGACAAGTCAAGTTTTGGTTGGTGAT...GAAAGTATAAAGTGCAAAGAAGGACGGGGAAGAGATACCAGTAAAGGACCTAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| 3UTR-3UTR CAA 90 bp | AGGACATTTCCTCTTCAAGCCACAATGTCTCTTGCTATTTTGAACAGGGCAAGAATGTCTCTTGCTATTTaGAACAGGGCAAGAAACAGA | + |
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Preference number: 3 (lower is better) Translates to: RTFPLQATMSLAILNRARMSLAI*NRARNR Trigger: TCTGTTTCTTGCCCTGTTCAAAATAGCAAGAGACAT...TCTTGCCCTGTTCAAAATAGCAAGAGACATTGTGGCTTGAAGAGGAAATGTCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056728.5 ENSMUST00000207693.2 |
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| 3UTR-3UTR CAA 90 bp | GTCAGCATGTATAAATGGGCGTACCTATCATTTAGCCTTCAGATATGCCTGTTATGTGTATGCAAGAGGTaGCTTACAGTGGCTCAAATA | + |
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Preference number: 3 (lower is better) Translates to: VSMYKWAYLSFSLQICLLCVCKR*LTVAQI Trigger: TATTTGAGCCACTGTAAGCAACCTCTTGCATACACA...TAACAGGCATATCTGAAGGCTAAATGATAGGTACGCCCATTTATACATGCTGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056728.5 ENSMUST00000207693.2 |
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| 3UTR-3UTR CAA 90 bp | GTCAGCATGTATAAATGGGCGTACCTATCATTTAGCCTTCAGATATGCCTGTTAGAAAGGAAAATTGCTTaGCCTTCTGTGAGAAACTGG | + |
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Preference number: 3 (lower is better) Translates to: VSMYKWAYLSFSLQICLLERKIA*PSVRNW Trigger: CCAGTTTCTCACAGAAGGCAAAGCAATTTTCCTTTC...TAACAGGCATATCTGAAGGCTAAATGATAGGTACGCCCATTTATACATGCTGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207693.2 |
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| 3UTR-3UTR CAA 90 bp | GTCAGCATGTATAAATGGGCGTACCTATCATTTAGCCTTCAGATATGCCTGTTATTTAAACTGAATGTTTaGGGTCACTCTGGTATAGGC | + |
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Preference number: 3 (lower is better) Translates to: VSMYKWAYLSFSLQICLLFKLNV*GHSGIG Trigger: GCCTATACCAGAGTGACCCAAAACATTCAGTTTAAA...TAACAGGCATATCTGAAGGCTAAATGATAGGTACGCCCATTTATACATGCTGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207693.2 |
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| CDS-3UTR TCA 90 bp | AGGACATTTCCTCTTCAAGCCACAATGTCTCTTGCTATTTTGAACAGGGCAAGATGTGGCGAGGCTGCTTaGCTATTTCATAAGGGCGAT | + |
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Preference number: 4 (lower is better) Translates to: RTFPLQATMSLAILNRARCGEAA*LFHKGD Trigger: ATCGCCCTTATGAAATAGTCAAGCAGCCTCGCCACA...TCTTGCCCTGTTCAAAATAGCAAGAGACATTGTGGCTTGAAGAGGAAATGTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS-3UTR TCA 90 bp | AACAAGGTAGTTATAGCCCTCATAAATGAACAATGTTTCTGGATGTGGCCACTGACTCTGCCACTTTCTTaGCTTTGGGTGGTGGGATTT | + |
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Preference number: 4 (lower is better) Translates to: NKVVIALINEQCFWMWPLTLPLS*LWVVGF Trigger: AAATCCCACCACCCAAAGTCAAGAAAGTGGCAGAGT...CAGTGGCCACATCCAGAAACATTGTTCATTTATGAGGGCTATAACTACCTTGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS-3UTR TCA 90 bp | ACAATGTCTCTTGCTATTTTGAACAGGGCAAGAAACAGAGCAGTAGTCTCTGACTTGCTTTGCCTTCTGTaGGAAACTGGTCTAATGGCA | + |
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Preference number: 4 (lower is better) Translates to: TMSLAILNRARNRAVVSDLLCLL*ETGLMA Trigger: TGCCATTAGACCAGTTTCTCACAGAAGGCAAAGCAA...GTCAGAGACTACTGCTCTGTTTCTTGCCCTGTTCAAAATAGCAAGAGACATTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS-3UTR GCA 90 bp | ACAATGTCTCTTGCTATTTTGAACAGGGCAAGAAACAGAGCAGTAGTCTCTGACTGGTATAGGCAGGTCTaGAGATTTTTGCAGTTTCAC | + |
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Preference number: 4 (lower is better) Translates to: TMSLAILNRARNRAVVSDWYRQV*RFLQFH Trigger: GTGAAACTGCAAAAATCTGCAGACCTGCCTATACCA...GTCAGAGACTACTGCTCTGTTTCTTGCCCTGTTCAAAATAGCAAGAGACATTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS-3UTR CCA 90 bp | TCTAGGTCCTTTACTGGTATCTCTTCCCCGTCCTTCTTTGCACTTTATACTTTCTATTCTTCAGGTATGTaGCGAGGCTGCTTGACTATT | + |
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Preference number: 4 (lower is better) Translates to: SRSFTGISSPSFFALYTFYSSGM*RGCLTI Trigger: AATAGTCAAGCAGCCTCGCCACATACCTGAAGAATA...GAAAGTATAAAGTGCAAAGAAGGACGGGGAAGAGATACCAGTAAAGGACCTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS-3UTR CCA 90 bp | TCTAGGTCCTTTACTGGTATCTCTTCCCCGTCCTTCTTTGCACTTTATACTTTCAGAAGGATAGCTAGCTaGGCAGATTTCCTGTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: SRSFTGISSPSFFALYTFRRIAS*ADFLFL Trigger: AAGAAACAGGAAATCTGCCCAGCTAGCTATCCTTCT...GAAAGTATAAAGTGCAAAGAAGGACGGGGAAGAGATACCAGTAAAGGACCTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS-3UTR CCA 90 bp | GTCAGCATGTATAAATGGGCGTACCTATCATTTAGCCTTCAGATATGCCTGTTATTGAAATCCTTGCTTTaGCTTAAGGCTCTGAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: VSMYKWAYLSFSLQICLLLKSLL*LKALRW Trigger: CCACCTCAGAGCCTTAAGCCAAAGCAAGGATTTCAA...TAACAGGCATATCTGAAGGCTAAATGATAGGTACGCCCATTTATACATGCTGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207693.2 |
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| CDS-3UTR TCA 90 bp | GTCAGCATGTATAAATGGGCGTACCTATCATTTAGCCTTCAGATATGCCTGTTATTACCACGGTATGCTTaGAATCCTTGCTTTGGCTTA | + |
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Preference number: 4 (lower is better) Translates to: VSMYKWAYLSFSLQICLLLPRYA*NPCFGL Trigger: TAAGCCAAAGCAAGGATTTCAAGCATACCGTGGTAA...TAACAGGCATATCTGAAGGCTAAATGATAGGTACGCCCATTTATACATGCTGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207693.2 |
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| CDS-3UTR GCA 90 bp | AGGACATTTCCTCTTCAAGCCACAATGTCTCTTGCTATTTTGAACAGGGCAAGACATTTTACCACGGTATaGTTGAAATCCTTGCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: RTFPLQATMSLAILNRARHFTTV*LKSLLW Trigger: CCAAAGCAAGGATTTCAAGCATACCGTGGTAAAATG...TCTTGCCCTGTTCAAAATAGCAAGAGACATTGTGGCTTGAAGAGGAAATGTCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207693.2 |
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| 3UTR CAA 72 bp | AACAGAGCAGTAGTCTCTGACATCACCAACCAAAACTaGACTTGTCCTATTCTCTGTAGATGTACTGAAGAT | + |
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Preference number: 4 (lower is better) Translates to: NRAVVSDITNQN*TCPILCRCTED Trigger: ATCTTCAGTACATCTACAGAGAATAGGACAAGTCAAGTTTTGGTTGGTGATGTCAGAGACTACTGCTCTGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056728.5 ENSMUST00000207693.2 |
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| 3UTR CAA 72 bp | CTAGGTCCTTTACTGGTATCTCTTCCCCGTCCTTCTTaGCACTTTATACTTTCAGTAATGAACAAGGTAGTT | + |
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Preference number: 4 (lower is better) Translates to: LGPLLVSLPRPS*HFILSVMNKVV Trigger: AACTACCTTGTTCATTACTGAAAGTATAAAGTGCAAAGAAGGACGGGGAAGAGATACCAGTAAAGGACCTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS-3UTR TCA 90 bp | GGGCAGATGCCTCTTACAAACACACATTACTCATTTATGACTTTAGTCAAAGCAGTACTTCCTTTAAACTaGATGTTTTGGGTCACTCTG | + |
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Preference number: 4 (lower is better) Translates to: GQMPLTNTHYSFMTLVKAVLPLN*MFWVTL Trigger: CAGAGTGACCCAAAACATTCAGTTTAAAGGAAGTAC...TGCTTTGACTAAAGTCATAAATGAGTAATGTGTGTTTGTAAGAGGCATCTGCCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS-3UTR CCA 90 bp | GGGCAGATGCCTCTTACAAACACACATTACTCATTTATGACTTTAGTCAAAGCAATCATCTTTATAAGTTaGGACAGTGTCCAACTTTCC | + |
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Preference number: 4 (lower is better) Translates to: GQMPLTNTHYSFMTLVKAIIFIS*DSVQLS Trigger: GGAAAGTTGGACACTGTCCCAACTTATAAAGATGAT...TGCTTTGACTAAAGTCATAAATGAGTAATGTGTGTTTGTAAGAGGCATCTGCCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS-3UTR GCA 90 bp | GTAATGAACAAGGTAGTTATAGCCCTCATAAATGAACAATGTTTCTGGATGTGGCTTGGAAAGGAAAATTaGTTTGCCTTCTGTGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: VMNKVVIALINEQCFWMWLGKEN*FAFCEK Trigger: TTTCTCACAGAAGGCAAAGCAATTTTCCTTTCCAAG...CCACATCCAGAAACATTGTTCATTTATGAGGGCTATAACTACCTTGTTCATTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS-3UTR TCA 90 bp | TCCTTCTTTGCACTTTATACTTTCAGTAATGAACAAGGTAGTTATAGCCCTCATATCCTGAAATGTAGTTaGGTTTCCGAATTTCACATC | + |
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Preference number: 4 (lower is better) Translates to: SFFALYTFSNEQGSYSPHILKCS*VSEFHI Trigger: GATGTGAAATTCGGAAACTCAACTACATTTCAGGAT...ATGAGGGCTATAACTACCTTGTTCATTACTGAAAGTATAAAGTGCAAAGAAGGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS-3UTR CAA 90 bp | GGGCAGATGCCTCTTACAAACACACATTACTCATTTATGACTTTAGTCAAAGCAGGGCCTACAGAACACTaGACCACAGAGCAGGGCTTA | + |
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Preference number: 5 (lower is better) Translates to: GQMPLTNTHYSFMTLVKAGPTEH*TTEQGL Trigger: TAAGCCCTGCTCTGTGGTCAAGTGTTCTGTAGGCCC...TGCTTTGACTAAAGTCATAAATGAGTAATGTGTGTTTGTAAGAGGCATCTGCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS-3UTR CAA 90 bp | GTCAGCATGTATAAATGGGCGTACCTATCATTTAGCCTTCAGATATGCCTGTTATACTCTGCCACTTTCTaGACTTTGGGTGGTGGGATT | + |
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Preference number: 5 (lower is better) Translates to: VSMYKWAYLSFSLQICLLYSATF*TLGGGI Trigger: AATCCCACCACCCAAAGTCAAGAAAGTGGCAGAGTA...TAACAGGCATATCTGAAGGCTAAATGATAGGTACGCCCATTTATACATGCTGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS-3UTR CAA 90 bp | ACAGGCGTGTGTATGCAAGAGGTTGCTTACAGTGGCTCAAATATAAACCGAAGATTTAAACTGAATGTTTaGGGTCACTCTGGTATAGGC | + |
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Preference number: 5 (lower is better) Translates to: TGVCMQEVAYSGSNINRRFKLNV*GHSGIG Trigger: GCCTATACCAGAGTGACCCAAAACATTCAGTTTAAA...TCTTCGGTTTATATTTGAGCCACTGTAAGCAACCTCTTGCATACACACGCCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS-3UTR CAA 90 bp | ACAATGTCTCTTGCTATTTTGAACAGGGCAAGAAACAGAGCAGTAGTCTCTGACAATATTCATAAACCCTaGTGGTTCCATGTGGACAGC | + |
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Preference number: 5 (lower is better) Translates to: TMSLAILNRARNRAVVSDNIHKP*WFHVDS Trigger: GCTGTCCACATGGAACCACAAGGGTTTATGAATATT...GTCAGAGACTACTGCTCTGTTTCTTGCCCTGTTCAAAATAGCAAGAGACATTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207693.2 |
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| CDS-3UTR CAA 90 bp | GTCAGCATGTATAAATGGGCGTACCTATCATTTAGCCTTCAGATATGCCTGTTATCAATTTTCCCCTGTTaGGGTTTATATTCTTCAGGT | + |
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Preference number: 5 (lower is better) Translates to: VSMYKWAYLSFSLQICLLSIFPC*GLYSSG Trigger: ACCTGAAGAATATAAACCCAAACAGGGGAAAATTGA...TAACAGGCATATCTGAAGGCTAAATGATAGGTACGCCCATTTATACATGCTGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS-3UTR CAA 90 bp | GGGCAGATGCCTCTTACAAACACACATTACTCATTTATGACTTTAGTCAAAGCAAATCATCTTTATAAGTaGGGACAGTGTCCAACTTTC | + |
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Preference number: 5 (lower is better) Translates to: GQMPLTNTHYSFMTLVKANHLYK*GQCPTF Trigger: GAAAGTTGGACACTGTCCCAACTTATAAAGATGATT...TGCTTTGACTAAAGTCATAAATGAGTAATGTGTGTTTGTAAGAGGCATCTGCCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS-3UTR CAA 90 bp | TCCTTCTTTGCACTTTATACTTTCAGTAATGAACAAGGTAGTTATAGCCCTCATGAAAGGAAAATTGCTTaGCCTTCTGTGAGAAACTGG | + |
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Preference number: 5 (lower is better) Translates to: SFFALYTFSNEQGSYSPHERKIA*PSVRNW Trigger: CCAGTTTCTCACAGAAGGCAAAGCAATTTTCCTTTC...ATGAGGGCTATAACTACCTTGTTCATTACTGAAAGTATAAAGTGCAAAGAAGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056728.5 |
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| CDS CAA 72 bp | TCGTGGGGCAAGATACGTCAGAATATTCATAAACCCTaGTGGTTCCATGTGGACAGCGATGCCGTCCGCAGG | + |
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Preference number: 6 (lower is better) Translates to: SWGKIRQNIHKP*WFHVDSDAVRR Trigger: CCTGCGGACGGCATCGCTGTCCACATGGAACCACAAGGGTTTATGAATATTCTGACGTATCTTGCCCCACGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156720.8 |
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| CDS CAA 90 bp | AATACTCCGTCGTGGGGCAAGATACGTCAGAATATTCATAAACCCTaGTGGTTCCATGTGGACAGCGATGCCGTCCGCAGGTGCAAATCT | + |
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Preference number: 6 (lower is better) Translates to: NTPSWGKIRQNIHKP*WFHVDSDAVRRCKS Trigger: AGATTTGCACCTGCGGACGGCATCGCTGTCCACATGGAACCACAAGGGTTTATGAATATTCTGACGTATCTTGCCCCACGACGGAGTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156720.8 |
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| CDS CAA 72 bp | TCGTGGGGCAAGATACGTCAGAATATTCATAAACCCTaGTGGTTCCATGTGGACAGCGATGCCGTCTGTACA | + |
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Preference number: 6 (lower is better) Translates to: SWGKIRQNIHKP*WFHVDSDAVCT Trigger: TGTACAGACGGCATCGCTGTCCACATGGAACCACAAGGGTTTATGAATATTCTGACGTATCTTGCCCCACGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207693.2 |
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| CDS TCA 72 bp | TGTCTGCTGCAAAGGAGGTGCTGGAAAGTGCTGAAGTaGTTTTGTCCTATGCAGGGTCCAAGATACTTGGAA | + |
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Preference number: 6 (lower is better) Translates to: CLLQRRCWKVLK*FCPMQGPRYLE Trigger: TTCCAAGTATCTTGGACCCTGCATAGGACAAAATCACTTCAGCACTTTCCAGCACCTCCTTTGCAGCAGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126478.2 |
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