Pregenerated sensors for SAV1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021067Ensembl transcript IDs: ENSMUST00000021467.8
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAAACCATCTCATTCCAGAAAACACTTGACACCACACGTAGCAACTaGTCACAGATGTACTCTCATCCTCTTCTGTTTCCTAAACAAGAA | + |
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Preference number: 1 (lower is better) Translates to: QTISFQKTLDTTRSN*SQMYSHPLLFPKQE Trigger: TTCTTGTTTAGGAAACAGAAGAGGATGAGAGTACATCTGTGATCAGTTGCTACGTGTGGTGTCAAGTGTTTTCTGGAATGAGATGGTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| 3UTR CAA 90 bp | TATTTAATGCCTGTTTATGCTGATAATCTCTTCCTGTACTACTTTTaGTCCAGAGTCTCCAGCAGTTTCCTAATACAGCATTTGGTAGCA | + |
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Preference number: 2 (lower is better) Translates to: YLMPVYADNLFLYYF*SRVSSSFLIQHLVA Trigger: TGCTACCAAATGCTGTATTAGGAAACTGCTGGAGACTCTGGACAAAAAGTAGTACAGGAAGAGATTATCAGCATAAACAGGCATTAAATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| 3UTR TCA 72 bp | TCATTCCAGAAAACACTTGACACCACACGTAGCAACTaGTCACAGATGTACTCTCATCCTCTTCTGTTTCCT | + |
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Preference number: 3 (lower is better) Translates to: SFQKTLDTTRSN*SQMYSHPLLFP Trigger: AGGAAACAGAAGAGGATGAGAGTACATCTGTGATCAGTTGCTACGTGTGGTGTCAAGTGTTTTCTGGAATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| 3UTR-3UTR CAA 90 bp | CTAAACAAGAAGGGTGTGTCCATAAAAAGTCAGAGAGTGACGGTTTCCTATTTATTCCTGTACTACTTTTaGTCCAGAGTCTCCAGCAGT | + |
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Preference number: 3 (lower is better) Translates to: LNKKGVSIKSQRVTVSYLFLYYF*SRVSSS Trigger: ACTGCTGGAGACTCTGGACAAAAAGTAGTACAGGAA...TAAATAGGAAACCGTCACTCTCTGACTTTTTATGGACACACCCTTCTTGTTTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| 3UTR-3UTR CAA 90 bp | CTCTTCTGTTTCCTAAACAAGAAGGGTGTGTCCATAAAAAGTCAGAGAGTGACGTTCCTAATACAGCATTaGGTAGCATATGCCATATTG | + |
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Preference number: 3 (lower is better) Translates to: LFCFLNKKGVSIKSQRVTFLIQH*VAYAIL Trigger: CAATATGGCATATGCTACCAAATGCTGTATTAGGAA...CGTCACTCTCTGACTTTTTATGGACACACCCTTCTTGTTTAGGAAACAGAAGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| 3UTR TCA 72 bp | ATATTCACAACATTTGTAAGCACAACTGAAGAGCTATaGAGCTCAAGAATTCTAGATTTACAGCTGGAAGTT | + |
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Preference number: 3 (lower is better) Translates to: IFTTFVSTTEEL*SSRILDLQLEV Trigger: AACTTCCAGCTGTAAATCTAGAATTCTTGAGCTTCATAGCTCTTCAGTTGTGCTTACAAATGTTGTGAATAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR TCA 90 bp | CTCAAAGACTTCATCTTTCTCCTTCAAAGGTGTTCCTTACATTGGGGGTCGGGGGAAGTGTGCCTCCCCTaGCTCTGTGGCATCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: LKDFIFLLQRCSLHWGSGEVCLP*LCGILW Trigger: CCAGAGGATGCCACAGAGTCAGGGGAGGCACACTTC...CCCCGACCCCCAATGTAAGGAACACCTTTGAAGGAGAAAGATGAAGTCTTTGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR CCA 90 bp | CTCAAAGACTTCATCTTTCTCCTTCAAAGGTGTTCCTTACATTGGGGGTCGGGGAGAGGTCAGTCCGTCTaGGAATTGTTGGACCGTGCC | + |
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Preference number: 4 (lower is better) Translates to: LKDFIFLLQRCSLHWGSGRGQSV*ELLDRA Trigger: GGCACGGTCCAACAATTCCCAGACGGACTGACCTCT...CCCCGACCCCCAATGTAAGGAACACCTTTGAAGGAGAAAGATGAAGTCTTTGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR CCA 90 bp | GTCGTTTTTGGCAACTTAGCCCACCCTGATGGAAGGCAGTATTCTATGTGGTCATCCAGGTCAGCCAGCTaGAAGAGCTCCCACTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: VVFGNLAHPDGRQYSMWSSRSAS*KSSHFR Trigger: TCTGAAGTGGGAGCTCTTCCAGCTGGCTGACCTGGA...TGACCACATAGAATACTGCCTTCCATCAGGGTGGGCTAAGTTGCCAAAAACGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR GCA 90 bp | CTCAAAGACTTCATCTTTCTCCTTCAAAGGTGTTCCTTACATTGGGGGTCGGGGTACCACTGCTGCCTCTaGTTGCGGTTTTCCAACTCA | + |
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Preference number: 4 (lower is better) Translates to: LKDFIFLLQRCSLHWGSGYHCCL*LRFSNS Trigger: TGAGTTGGAAAACCGCAAGCAGAGGCAGCAGTGGTA...CCCCGACCCCCAATGTAAGGAACACCTTTGAAGGAGAAAGATGAAGTCTTTGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR CCA 90 bp | AGGAAGCCTGTGCTGTGTCTCAGAGCCATGCTAACTGTACTTATGTGCTCTGCCTCCCACTTCAGAATGTaGTCATATTTCACAGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: RKPVLCLRAMLTVLMCSASHFRM*SYFTGA Trigger: AGCCCCTGTGAAATATGACCACATTCTGAAGTGGGA...GGCAGAGCACATAAGTACAGTTAGCATGGCTCTGAGACACAGCACAGGCTTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR TCA 90 bp | TTGACACCACACGTAGCAACTGATCACAGATGTACTCTCATCCTCTTCTGTTTCACCGTGCCGAATGAATaGAGGCATGAGATTCCGCAG | + |
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Preference number: 4 (lower is better) Translates to: LTPHVATDHRCTLILFCFTVPNE*RHEIPQ Trigger: CTGCGGAATCTCATGCCTTCATTCATTCGGCACGGT...GAAACAGAAGAGGATGAGAGTACATCTGTGATCAGTTGCTACGTGTGGTGTCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR TCA 90 bp | GTCGTTTTTGGCAACTTAGCCCACCCTGATGGAAGGCAGTATTCTATGTGGTCAGAAAGCAGTAGCACTTaGATCTGGAAGACAGAGGTC | + |
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Preference number: 4 (lower is better) Translates to: VVFGNLAHPDGRQYSMWSESSST*IWKTEV Trigger: GACCTCTGTCTTCCAGATTCAAGTGCTACTGCTTTC...TGACCACATAGAATACTGCCTTCCATCAGGGTGGGCTAAGTTGCCAAAAACGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR GCA 90 bp | TCTCATCCTCTTCTGTTTCCTAAACAAGAAGGGTGTGTCCATAAAAAGTCAGAGTGGGCATACCACTGCTaGCTCTGCTTGCGGTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: SHPLLFPKQEGCVHKKSEWAYHC*LCLRFS Trigger: GGAAAACCGCAAGCAGAGGCAGCAGTGGTATGCCCA...CTCTGACTTTTTATGGACACACCCTTCTTGTTTAGGAAACAGAAGAGGATGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR GCA 90 bp | TCTCATCCTCTTCTGTTTCCTAAACAAGAAGGGTGTGTCCATAAAAAGTCAGAGTGCTGGGCATACCACTaGTGCCTCTGCTTGCGGTTT | + |
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Preference number: 4 (lower is better) Translates to: SHPLLFPKQEGCVHKKSECWAYH*CLCLRF Trigger: AAACCGCAAGCAGAGGCAGCAGTGGTATGCCCAGCA...CTCTGACTTTTTATGGACACACCCTTCTTGTTTAGGAAACAGAAGAGGATGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR TCA 90 bp | GCAACTGATCACAGATGTACTCTCATCCTCTTCTGTTTCCTAAACAAGAAGGGTGGTTTTCCAACTCAGTaGGAAGAGCCTGTCTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: ATDHRCTLILFCFLNKKGGFPTQ*EEPVCR Trigger: CCTACAGACAGGCTCTTCTCACTGAGTTGGAAAACC...ACCCTTCTTGTTTAGGAAACAGAAGAGGATGAGAGTACATCTGTGATCAGTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR GCA 90 bp | GTTTATGCTGATAATCTCTTCCTGTACTACTTTTTGTCCAGAGTCTCCAGCAGTAAGAACGTCTTGCCATaGTGCTGGGCATACCACTGC | + |
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Preference number: 4 (lower is better) Translates to: VYADNLFLYYFLSRVSSSKNVLP*CWAYHC Trigger: GCAGTGGTATGCCCAGCAGCATGGCAAGACGTTCTT...ACTGCTGGAGACTCTGGACAAAAAGTAGTACAGGAAGAGATTATCAGCATAAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR CCA 90 bp | AGGAAGCCTGTGCTGTGTCTCAGAGCCATGCTAACTGTACTTATGTGCTCTGCCGATGACTCCAGTGAGTaGTATTTGTGTTATGATCTA | + |
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Preference number: 4 (lower is better) Translates to: RKPVLCLRAMLTVLMCSADDSSE*YLCYDL Trigger: TAGATCATAACACAAATACCACTCACTGGAGTCATC...GGCAGAGCACATAAGTACAGTTAGCATGGCTCTGAGACACAGCACAGGCTTCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR GCA 90 bp | GTCGTTTTTGGCAACTTAGCCCACCCTGATGGAAGGCAGTATTCTATGTGGTCATACAACTTCACAATCTaGTCCAGTTCCTTCATGAAG | + |
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Preference number: 4 (lower is better) Translates to: VVFGNLAHPDGRQYSMWSYNFTI*SSSFMK Trigger: CTTCATGAAGGAACTGGAGCAGATTGTGAAGTTGTA...TGACCACATAGAATACTGCCTTCCATCAGGGTGGGCTAAGTTGCCAAAAACGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR CCA 90 bp | TTGAACTATACCTATGGTAATAGTCAAACCATCTCATTCCAGAAAACACTTGACGTCTTGCCATGCTGCTaGGCATACCACTGCTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: LNYTYGNSQTISFQKTLDVLPCC*AYHCCL Trigger: GAGGCAGCAGTGGTATGCCCAGCAGCATGGCAAGAC...GTCAAGTGTTTTCTGGAATGAGATGGTTTGACTATTACCATAGGTATAGTTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR TCA 90 bp | CTCTTCTGTTTCCTAAACAAGAAGGGTGTGTCCATAAAAAGTCAGAGAGTGACGGGGACCAGGAGAGACTaGTTTCTTTCAGTTTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: LFCFLNKKGVSIKSQRVTGTRRD*FLSVCC Trigger: ACAACAAACTGAAAGAAATCAGTCTCTCCTGGTCCC...CGTCACTCTCTGACTTTTTATGGACACACCCTTCTTGTTTAGGAAACAGAAGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR CCA 90 bp | TTGAACTATACCTATGGTAATAGTCAAACCATCTCATTCCAGAAAACACTTGACAACTTCAGCATTCCCTaGTACGTGTCCAGGTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: LNYTYGNSQTISFQKTLDNFSIP*YVSRSA Trigger: GGCTGACCTGGACACGTACCAGGGAATGCTGAAGTT...GTCAAGTGTTTTCTGGAATGAGATGGTTTGACTATTACCATAGGTATAGTTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| 3UTR CAA 72 bp | ATGGTAATAGTCAAACCATCTCATTCCAGAAAACACTaGACACCACACGTAGCAACTGATCACAGATGTACT | + |
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Preference number: 4 (lower is better) Translates to: MVIVKPSHSRKH*TPHVATDHRCT Trigger: AGTACATCTGTGATCAGTTGCTACGTGTGGTGTCAAGTGTTTTCTGGAATGAGATGGTTTGACTATTACCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR CCA 90 bp | TTGAACTATACCTATGGTAATAGTCAAACCATCTCATTCCAGAAAACACTTGACTCTTTCAGTTTGTTGTaGCTGATACGTGATGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: LNYTYGNSQTISFQKTLDSFSLL*LIRDGW Trigger: CCACCCATCACGTATCAGCCACAACAAACTGAAAGA...GTCAAGTGTTTTCTGGAATGAGATGGTTTGACTATTACCATAGGTATAGTTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS TCA 90 bp | GCTGGGCATACCACTGCTGCCTCTGCTTGCGGTTTTCCAACTCAGTaGGAAGAGCCTGTCTGTAGGCCTCGTACAACTTCACAATCTGCT | + |
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Preference number: 5 (lower is better) Translates to: AGHTTAASACGFPTQ*EEPVCRPRTTSQSA Trigger: AGCAGATTGTGAAGTTGTACGAGGCCTACAGACAGGCTCTTCTCACTGAGTTGGAAAACCGCAAGCAGAGGCAGCAGTGGTATGCCCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS TCA 90 bp | GGACCAGGAGAGACTGATTTCTTTCAGTTTGTTGTGGCTGATACGTaGTGGGTGGAGGCTGATCATACCGAGGTACACTCGGAGCACAGG | + |
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Preference number: 5 (lower is better) Translates to: GPGETDFFQFVVADT*WVEADHTEVHSEHR Trigger: CCTGTGCTCCGAGTGTACCTCGGTATGATCAGCCTCCACCCATCACGTATCAGCCACAACAAACTGAAAGAAATCAGTCTCTCCTGGTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CCA 90 bp | GAGAGACTGATTTCTTTCAGTTTGTTGTGGCTGATACGTGATGGGTaGAGGCTGATCATACCGAGGTACACTCGGAGCACAGGGGTGCCT | + |
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Preference number: 5 (lower is better) Translates to: ERLISFSLLWLIRDG*RLIIPRYTRSTGVP Trigger: AGGCACCCCTGTGCTCCGAGTGTACCTCGGTATGATCAGCCTCCACCCATCACGTATCAGCCACAACAAACTGAAAGAAATCAGTCTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CCA 90 bp | AAGAGCAACTTCAGCATTCCCTGGTACGTGTCCAGGTCAGCCAGCTaGAAGAGCTCCCACTTCAGAATGTGGTCATATTTCACAGGGGCT | + |
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Preference number: 5 (lower is better) Translates to: KSNFSIPWYVSRSAS*KSSHFRMWSYFTGA Trigger: AGCCCCTGTGAAATATGACCACATTCTGAAGTGGGAGCTCTTCCAGCTGGCTGACCTGGACACGTACCAGGGAATGCTGAAGTTGCTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CCA 90 bp | ACAATCTGCTCCAGTTCCTTCATGAAGAGCAACTTCAGCATTCCCTaGTACGTGTCCAGGTCAGCCAGCTGGAAGAGCTCCCACTTCAGA | + |
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Preference number: 5 (lower is better) Translates to: TICSSSFMKSNFSIP*YVSRSASWKSSHFR Trigger: TCTGAAGTGGGAGCTCTTCCAGCTGGCTGACCTGGACACGTACCAGGGAATGCTGAAGTTGCTCTTCATGAAGGAACTGGAGCAGATTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR CAA 90 bp | CAGGAAGCCTGTGCTGTGTCTCAGAGCCATGCTAACTGTACTTATGTGCTCTGCCAGTATGGTAGGGATTaGCAGGGACCAGGAGAGACT | + |
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Preference number: 5 (lower is better) Translates to: QEACAVSQSHANCTYVLCQYGRD*QGPGET Trigger: AGTCTCTCCTGGTCCCTGCAAATCCCTACCATACTG...GCAGAGCACATAAGTACAGTTAGCATGGCTCTGAGACACAGCACAGGCTTCCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS TCA 90 bp | GTCTGTAGGCCTCGTACAACTTCACAATCTGCTCCAGTTCCTTCATaGAGAGCAACTTCAGCATTCCCTGGTACGTGTCCAGGTCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: VCRPRTTSQSAPVPS*RATSAFPGTCPGQP Trigger: TGGCTGACCTGGACACGTACCAGGGAATGCTGAAGTTGCTCTTCATGAAGGAACTGGAGCAGATTGTGAAGTTGTACGAGGCCTACAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS GCA 90 bp | TTTCACAGGGGCTCGGGCATAAACCTGAAGCCAGTCAGGAATTTCTaGAGTATGGTAGGGATTTGCAGGGACCAGGAGAGACTGATTTCT | + |
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Preference number: 5 (lower is better) Translates to: FHRGSGINLKPVRNF*SMVGICRDQERLIS Trigger: AGAAATCAGTCTCTCCTGGTCCCTGCAAATCCCTACCATACTGCAGAAATTCCTGACTGGCTTCAGGTTTATGCCCGAGCCCCTGTGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CCA 90 bp | GGGATTTGCAGGGACCAGGAGAGACTGATTTCTTTCAGTTTGTTGTaGCTGATACGTGATGGGTGGAGGCTGATCATACCGAGGTACACT | + |
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Preference number: 5 (lower is better) Translates to: GICRDQERLISFSLL*LIRDGWRLIIPRYT Trigger: AGTGTACCTCGGTATGATCAGCCTCCACCCATCACGTATCAGCCACAACAAACTGAAAGAAATCAGTCTCTCCTGGTCCCTGCAAATCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CCA 90 bp | GAGGTACACTCGGAGCACAGGGGTGCCTGTACTGAGCCCTTTTATTaGTGTGATCCACGTAATAGGTTCCAAATTCTGATGACTCTACTC | + |
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Preference number: 5 (lower is better) Translates to: EVHSEHRGACTEPFY*CDPRNRFQILMTLL Trigger: GAGTAGAGTCATCAGAATTTGGAACCTATTACGTGGATCACACCAATAAAAGGGCTCAGTACAGGCACCCCTGTGCTCCGAGTGTACCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR CAA 90 bp | CTCTTCTGTTTCCTAAACAAGAAGGGTGTGTCCATAAAAAGTCAGAGAGTGACGCACTGCTGCCTCTGCTaGCGGTTTTCCAACTCAGTG | + |
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Preference number: 5 (lower is better) Translates to: LFCFLNKKGVSIKSQRVTHCCLC*RFSNSV Trigger: CACTGAGTTGGAAAACCGCAAGCAGAGGCAGCAGTG...CGTCACTCTCTGACTTTTTATGGACACACCCTTCTTGTTTAGGAAACAGAAGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS GCA 90 bp | ATAAACCTGAAGCCAGTCAGGAATTTCTGCAGTATGGTAGGGATTTaGAGGGACCAGGAGAGACTGATTTCTTTCAGTTTGTTGTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: INLKPVRNFCSMVGI*RDQERLISFSLLWL Trigger: CAGCCACAACAAACTGAAAGAAATCAGTCTCTCCTGGTCCCTGCAAATCCCTACCATACTGCAGAAATTCCTGACTGGCTTCAGGTTTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CCA 90 bp | AGCCAGGAGGAAGTCCTTCTCGTTCAAGGGGATGACTCCAGTGAGTaGTATTTGTGTTATGATCTATGTAGTATTTTCTCCCTCTCATTG | + |
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Preference number: 5 (lower is better) Translates to: SQEEVLLVQGDDSSE*YLCYDLCSIFSLSL Trigger: CAATGAGAGGGAGAAAATACTACATAGATCATAACACAAATACCACTCACTGGAGTCATCCCCTTGAACGAGAAGGACTTCCTCCTGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR CAA 90 bp | TCTCATCCTCTTCTGTTTCCTAAACAAGAAGGGTGTGTCCATAAAAAGTCAGAGTTCATGAGGTGTCCTTaGAATTGCAGTTCTCAGGAA | + |
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Preference number: 5 (lower is better) Translates to: SHPLLFPKQEGCVHKKSEFMRCP*NCSSQE Trigger: TTCCTGAGAACTGCAATTCAAAGGACACCTCATGAA...CTCTGACTTTTTATGGACACACCCTTCTTGTTTAGGAAACAGAAGAGGATGAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR CAA 90 bp | TCTCATCCTCTTCTGTTTCCTAAACAAGAAGGGTGTGTCCATAAAAAGTCAGAGATTTCTTTCAGTTTGTaGTGGCTGATACGTGATGGG | + |
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Preference number: 5 (lower is better) Translates to: SHPLLFPKQEGCVHKKSEISFSL*WLIRDG Trigger: CCCATCACGTATCAGCCACAACAAACTGAAAGAAAT...CTCTGACTTTTTATGGACACACCCTTCTTGTTTAGGAAACAGAAGAGGATGAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR CAA 90 bp | GCAACTGATCACAGATGTACTCTCATCCTCTTCTGTTTCCTAAACAAGAAGGGTCTGATTTCTTTCAGTTaGTTGTGGCTGATACGTGAT | + |
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Preference number: 5 (lower is better) Translates to: ATDHRCTLILFCFLNKKGLISFS*LWLIRD Trigger: ATCACGTATCAGCCACAACAAACTGAAAGAAATCAG...ACCCTTCTTGTTTAGGAAACAGAAGAGGATGAGAGTACATCTGTGATCAGTTGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS-3UTR CAA 90 bp | CTCTTCTGTTTCCTAAACAAGAAGGGTGTGTCCATAAAAAGTCAGAGAGTGACGTCCAGTGAGTGGTATTaGTGTTATGATCTATGTAGT | + |
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Preference number: 5 (lower is better) Translates to: LFCFLNKKGVSIKSQRVTSSEWY*CYDLCS Trigger: ACTACATAGATCATAACACAAATACCACTCACTGGA...CGTCACTCTCTGACTTTTTATGGACACACCCTTCTTGTTTAGGAAACAGAAGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS GCA 72 bp | GTCTTGCCATGCTGCTGGGCATACCACTGCTGCCTCTaGTTGCGGTTTTCCAACTCAGTGAGAAGAGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: VLPCCWAYHCCL*LRFSNSVRRAC Trigger: ACAGGCTCTTCTCACTGAGTTGGAAAACCGCAAGCAGAGGCAGCAGTGGTATGCCCAGCAGCATGGCAAGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CAA 72 bp | TTGCCATGCTGCTGGGCATACCACTGCTGCCTCTGCTaGCGGTTTTCCAACTCAGTGAGAAGAGCCTGTCTG | + |
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Preference number: 6 (lower is better) Translates to: LPCCWAYHCCLC*RFSNSVRRACL Trigger: CAGACAGGCTCTTCTCACTGAGTTGGAAAACCGCAAGCAGAGGCAGCAGTGGTATGCCCAGCAGCATGGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CCA 72 bp | TCCAGTTCCTTCATGAAGAGCAACTTCAGCATTCCCTaGTACGTGTCCAGGTCAGCCAGCTGGAAGAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: SSSFMKSNFSIP*YVSRSASWKSS Trigger: GGAGCTCTTCCAGCTGGCTGACCTGGACACGTACCAGGGAATGCTGAAGTTGCTCTTCATGAAGGAACTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS TCA 72 bp | ACCACTGCTGCCTCTGCTTGCGGTTTTCCAACTCAGTaGGAAGAGCCTGTCTGTAGGCCTCGTACAACTTCA | + |
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Preference number: 6 (lower is better) Translates to: TTAASACGFPTQ*EEPVCRPRTTS Trigger: TGAAGTTGTACGAGGCCTACAGACAGGCTCTTCTCACTGAGTTGGAAAACCGCAAGCAGAGGCAGCAGTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS GCA 72 bp | AAGAACGTCTTGCCATGCTGCTGGGCATACCACTGCTaGCTCTGCTTGCGGTTTTCCAACTCAGTGAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: KNVLPCCWAYHC*LCLRFSNSVRR Trigger: TCTTCTCACTGAGTTGGAAAACCGCAAGCAGAGGCAGCAGTGGTATGCCCAGCAGCATGGCAAGACGTTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CCA 72 bp | TTCAGCATTCCCTGGTACGTGTCCAGGTCAGCCAGCTaGAAGAGCTCCCACTTCAGAATGTGGTCATATTTC | + |
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Preference number: 6 (lower is better) Translates to: FSIPWYVSRSAS*KSSHFRMWSYF Trigger: GAAATATGACCACATTCTGAAGTGGGAGCTCTTCCAGCTGGCTGACCTGGACACGTACCAGGGAATGCTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CAA 90 bp | GTAGGGATTTGCAGGGACCAGGAGAGACTGATTTCTTTCAGTTTGTaGTGGCTGATACGTGATGGGTGGAGGCTGATCATACCGAGGTAC | + |
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Preference number: 6 (lower is better) Translates to: VGICRDQERLISFSL*WLIRDGWRLIIPRY Trigger: GTACCTCGGTATGATCAGCCTCCACCCATCACGTATCAGCCACAACAAACTGAAAGAAATCAGTCTCTCCTGGTCCCTGCAAATCCCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CCA 72 bp | AGGGACCAGGAGAGACTGATTTCTTTCAGTTTGTTGTaGCTGATACGTGATGGGTGGAGGCTGATCATACCG | + |
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Preference number: 6 (lower is better) Translates to: RDQERLISFSLL*LIRDGWRLIIP Trigger: CGGTATGATCAGCCTCCACCCATCACGTATCAGCCACAACAAACTGAAAGAAATCAGTCTCTCCTGGTCCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS TCA 72 bp | GAGACTGATTTCTTTCAGTTTGTTGTGGCTGATACGTaGTGGGTGGAGGCTGATCATACCGAGGTACACTCG | + |
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Preference number: 6 (lower is better) Translates to: ETDFFQFVVADT*WVEADHTEVHS Trigger: CGAGTGTACCTCGGTATGATCAGCCTCCACCCATCACGTATCAGCCACAACAAACTGAAAGAAATCAGTCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS TCA 72 bp | CCTCGTACAACTTCACAATCTGCTCCAGTTCCTTCATaGAGAGCAACTTCAGCATTCCCTGGTACGTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: PRTTSQSAPVPS*RATSAFPGTCP Trigger: TGGACACGTACCAGGGAATGCTGAAGTTGCTCTTCATGAAGGAACTGGAGCAGATTGTGAAGTTGTACGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CCA 72 bp | TCGGAGCACAGGGGTGCCTGTACTGAGCCCTTTTATTaGTGTGATCCACGTAATAGGTTCCAAATTCTGATG | + |
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Preference number: 6 (lower is better) Translates to: SEHRGACTEPFY*CDPRNRFQILM Trigger: CATCAGAATTTGGAACCTATTACGTGGATCACACCAATAAAAGGGCTCAGTACAGGCACCCCTGTGCTCCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CCA 72 bp | ATTTCTTTCAGTTTGTTGTGGCTGATACGTGATGGGTaGAGGCTGATCATACCGAGGTACACTCGGAGCACA | + |
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Preference number: 6 (lower is better) Translates to: ISFSLLWLIRDG*RLIIPRYTRST Trigger: TGTGCTCCGAGTGTACCTCGGTATGATCAGCCTCCACCCATCACGTATCAGCCACAACAAACTGAAAGAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CAA 72 bp | TGCAGGGACCAGGAGAGACTGATTTCTTTCAGTTTGTaGTGGCTGATACGTGATGGGTGGAGGCTGATCATA | + |
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Preference number: 6 (lower is better) Translates to: CRDQERLISFSL*WLIRDGWRLII Trigger: TATGATCAGCCTCCACCCATCACGTATCAGCCACAACAAACTGAAAGAAATCAGTCTCTCCTGGTCCCTGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CAA 90 bp | CATAAACCTGAAGCCAGTCAGGAATTTCTGCAGTATGGTAGGGATTaGCAGGGACCAGGAGAGACTGATTTCTTTCAGTTTGTTGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: HKPEASQEFLQYGRD*QGPGETDFFQFVVA Trigger: AGCCACAACAAACTGAAAGAAATCAGTCTCTCCTGGTCCCTGCAAATCCCTACCATACTGCAGAAATTCCTGACTGGCTTCAGGTTTATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS GCA 72 bp | AAGCCAGTCAGGAATTTCTGCAGTATGGTAGGGATTTaGAGGGACCAGGAGAGACTGATTTCTTTCAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: KPVRNFCSMVGI*RDQERLISFSL Trigger: CAAACTGAAAGAAATCAGTCTCTCCTGGTCCCTGCAAATCCCTACCATACTGCAGAAATTCCTGACTGGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CAA 72 bp | GAAGCCAGTCAGGAATTTCTGCAGTATGGTAGGGATTaGCAGGGACCAGGAGAGACTGATTTCTTTCAGTTT | + |
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Preference number: 6 (lower is better) Translates to: EASQEFLQYGRD*QGPGETDFFQF Trigger: AAACTGAAAGAAATCAGTCTCTCCTGGTCCCTGCAAATCCCTACCATACTGCAGAAATTCCTGACTGGCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CCA 72 bp | GAAGTCCTTCTCGTTCAAGGGGATGACTCCAGTGAGTaGTATTTGTGTTATGATCTATGTAGTATTTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: EVLLVQGDDSSE*YLCYDLCSIFS Trigger: GGAGAAAATACTACATAGATCATAACACAAATACCACTCACTGGAGTCATCCCCTTGAACGAGAAGGACTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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| CDS CAA 72 bp | CTTCTCGTTCAAGGGGATGACTCCAGTGAGTGGTATTaGTGTTATGATCTATGTAGTATTTTCTCCCTCTCA | + |
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Preference number: 6 (lower is better) Translates to: LLVQGDDSSEWY*CYDLCSIFSLS Trigger: TGAGAGGGAGAAAATACTACATAGATCATAACACAAATACCACTCACTGGAGTCATCCCCTTGAACGAGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021467.8 |
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