Pregenerated sensors for SARNP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078427Ensembl transcript IDs: ENSMUST00000105230.4, ENSMUST00000219512.2, ENSMUST00000220381.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CTGCTACTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCACTGTGAGGCATTAGAAGCTGGGCAGTaGTGGGGACACACCTTTAGT | + |
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Preference number: 2 (lower is better) Translates to: LLLNSRMYQTYMLPHCEALEAGQ*WGHTFS Trigger: ACTAAAGGTGTGTCCCCACCACTGCCCAGCTTCTAA...TGCCTCACAGTGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAGTAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220381.2 |
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| 3UTR-3UTR GCA 90 bp | CTGCTACTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCACTGTGAGGCATGTACCAAACGTACATaGTTCCTCACTGTGAGGCAC | + |
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Preference number: 2 (lower is better) Translates to: LLLNSRMYQTYMLPHCEACTKRT*FLTVRH Trigger: GTGCCTCACAGTGAGGAAGCATGTACGTTTGGTACA...TGCCTCACAGTGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAGTAGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000105230.4 ENSMUST00000219512.2 ENSMUST00000220381.2 |
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| 3UTR-3UTR GCA 90 bp | CTACTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCACTGTGAGGCACATTGTACCAAACGTACATaGTTCCTCACTGTGAGGCAC | + |
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Preference number: 2 (lower is better) Translates to: LLNSRMYQTYMLPHCEAHCTKRT*FLTVRH Trigger: GTGCCTCACAGTGAGGAAGCATGTACGTTTGGTACA...ATGTGCCTCACAGTGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAGTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000105230.4 ENSMUST00000219512.2 ENSMUST00000220381.2 |
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| 3UTR-3UTR GCA 90 bp | CTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCACTGTGAGGCACATGACTGGAAAACACTATGGTaGAGAAAGCACGAACTTTTC | + |
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Preference number: 2 (lower is better) Translates to: LNSRMYQTYMLPHCEAHDWKTLW*RKHELF Trigger: GAAAAGTTCGTGCTTTCTGCACCATAGTGTTTTCCA...GTCATGTGCCTCACAGTGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000105230.4 ENSMUST00000219512.2 ENSMUST00000220381.2 |
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| 3UTR-3UTR CCA 90 bp | CTACTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCACTGTGAGGCACATAAATGGAAAACACTATaGTGCAGAAAGCACGAACTT | + |
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Preference number: 2 (lower is better) Translates to: LLNSRMYQTYMLPHCEAHKWKTL*CRKHEL Trigger: AAGTTCGTGCTTTCTGCACCATAGTGTTTTCCATTT...ATGTGCCTCACAGTGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAGTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000105230.4 ENSMUST00000219512.2 ENSMUST00000220381.2 |
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| 3UTR-3UTR GCA 90 bp | ATAAAACTGCTACTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCACTGTTGGAAAACACTATGGTaGAGAAAGCACGAACTTTTC | + |
|
Preference number: 2 (lower is better) Translates to: IKLLLNSRMYQTYMLPHCWKTLW*RKHELF Trigger: GAAAAGTTCGTGCTTTCTGCACCATAGTGTTTTCCA...ACAGTGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAGTAGCAGTTTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000105230.4 ENSMUST00000219512.2 ENSMUST00000220381.2 |
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| 3UTR-3UTR CCA 90 bp | TTAAATAAAACTGCTACTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCAAAATGGAAAACACTATaGTGCAGAAAGCACGAACTT | + |
|
Preference number: 2 (lower is better) Translates to: LNKTATEFKDVPNVHASSKWKTL*CRKHEL Trigger: AAGTTCGTGCTTTCTGCACCATAGTGTTTTCCATTT...TGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAGTAGCAGTTTTATTTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000105230.4 ENSMUST00000219512.2 ENSMUST00000220381.2 |
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| 3UTR CCA 72 bp | CAGAAAGGCAGAGAGGCAGGTGGATGGTCTTCGAGTTaGAGGGAAGACTGGTCTACAGAGCAAGTTCCAGAA | + |
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Preference number: 3 (lower is better) Translates to: QKGREAGGWSSS*REDWSTEQVPE Trigger: TTCTGGAACTTGCTCTGTAGACCAGTCTTCCCTCCAACTCGAAGACCATCCACCTGCCTCTCTGCCTTTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220381.2 |
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| CDS-3UTR TCA 90 bp | CTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCACTGTGAGGCACATGACGGCTTACAGGTACATTaGATCGTTCAGCCCTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: LNSRMYQTYMLPHCEAHDGLQVH*IVQPSS Trigger: AGAAGAGGGCTGAACGATTCAATGTACCTGTAAGCC...GTCATGTGCCTCACAGTGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000105230.4 ENSMUST00000219512.2 ENSMUST00000220381.2 |
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| CDS-3UTR TCA 90 bp | CTACTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCACTGTGAGGCACATGGCTTACAGGTACATTaGATCGTTCAGCCCTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: LLNSRMYQTYMLPHCEAHGLQVH*IVQPSS Trigger: AGAAGAGGGCTGAACGATTCAATGTACCTGTAAGCC...ATGTGCCTCACAGTGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAGTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000105230.4 ENSMUST00000219512.2 ENSMUST00000220381.2 |
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| CDS-3UTR TCA 90 bp | CTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCACTGTGAGGCACATGACTGCATTCTTTCAGTCTaGGGTATCCCAGATGTAATC | + |
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Preference number: 4 (lower is better) Translates to: LNSRMYQTYMLPHCEAHDCILSV*GIPDVI Trigger: GATTACATCTGGGATACCTCAGACTGAAAGAATGCA...GTCATGTGCCTCACAGTGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000105230.4 ENSMUST00000219512.2 ENSMUST00000220381.2 |
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| CDS-3UTR CCA 90 bp | CTGCTACTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCACTGTGAGGCACAGTTCTATGGGCTTTaGTTCTTCTTCCTCAGTTTC | + |
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Preference number: 4 (lower is better) Translates to: LLLNSRMYQTYMLPHCEAQFYGL*FFFLSF Trigger: GAAACTGAGGAAGAAGAACCAAAGCCCATAGAACTG...TGCCTCACAGTGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAGTAGCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105230.4 ENSMUST00000220381.2 |
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| CDS-3UTR TCA 90 bp | ATAAAACTGCTACTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCACTGTGGCTTACAGGTACATTaGATCGTTCAGCCCTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: IKLLLNSRMYQTYMLPHCGLQVH*IVQPSS Trigger: AGAAGAGGGCTGAACGATTCAATGTACCTGTAAGCC...ACAGTGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAGTAGCAGTTTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000105230.4 ENSMUST00000219512.2 ENSMUST00000220381.2 |
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| CDS-3UTR TCA 90 bp | TTAAATAAAACTGCTACTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCATGCATTCTTTCAGTCTaGGGTATCCCAGATGTAATC | + |
|
Preference number: 4 (lower is better) Translates to: LNKTATEFKDVPNVHASSCILSV*GIPDVI Trigger: GATTACATCTGGGATACCTCAGACTGAAAGAATGCA...TGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAGTAGCAGTTTTATTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000105230.4 ENSMUST00000219512.2 ENSMUST00000220381.2 |
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| CDS-3UTR GCA 90 bp | GAGCAGTTAAATAAAACTGCTACTGAATTCAAGGATGTACCAAACGTACATGCTATTTGCTTCTTCTTCTaGATGGTCTTCAAGATAGGC | + |
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Preference number: 4 (lower is better) Translates to: EQLNKTATEFKDVPNVHAICFFF*MVFKIG Trigger: GCCTATCTTGAAGACCATGCAGAAGAAGAAGCAAAT...AGCATGTACGTTTGGTACATCCTTGAATTCAGTAGCAGTTTTATTTAACTGCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105230.4 |
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| CDS-3UTR CCA 90 bp | TTAAATAAAACTGCTACTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCACAGTTCTATGGGCTTTaGTTCTTCTTCCTCAGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: LNKTATEFKDVPNVHASSQFYGL*FFFLSF Trigger: GAAACTGAGGAAGAAGAACCAAAGCCCATAGAACTG...TGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAGTAGCAGTTTTATTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105230.4 ENSMUST00000220381.2 |
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| CDS-3UTR GCA 90 bp | GAGCAGTTAAATAAAACTGCTACTGAATTCAAGGATGTACCAAACGTACATGCTTACATCTTCTTCATTTaGTTCTTCTTCTGCATGGTC | + |
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Preference number: 4 (lower is better) Translates to: EQLNKTATEFKDVPNVHAYIFFI*FFFCMV Trigger: GACCATGCAGAAGAAGAAGCAAATGAAGAAGATGTA...AGCATGTACGTTTGGTACATCCTTGAATTCAGTAGCAGTTTTATTTAACTGCTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105230.4 |
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| CDS-3UTR CAA 90 bp | GCAGAGAGGCAGGTGGATGGTCTTCGAGTTGGAGGGAAGACTGGTCTACAGAGCGCAGTTCTATGGGCTTaGGTTCTTCTTCCTCAGTTT | + |
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Preference number: 5 (lower is better) Translates to: AERQVDGLRVGGKTGLQSAVLWA*VLLPQF Trigger: AAACTGAGGAAGAAGAACCAAAGCCCATAGAACTGC...GCTCTGTAGACCAGTCTTCCCTCCAACTCGAAGACCATCCACCTGCCTCTCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220381.2 |
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| CDS-3UTR CAA 90 bp | CTGCTACTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCACTGTGAGGCAAGGTTAACCATAGGCTaGGTGTCAGATGATAAACCT | + |
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Preference number: 5 (lower is better) Translates to: LLLNSRMYQTYMLPHCEARLTIG*VSDDKP Trigger: AGGTTTATCATCTGACACCAAGCCTATGGTTAACCT...TGCCTCACAGTGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAGTAGCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105230.4 ENSMUST00000219512.2 |
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| CDS-3UTR CAA 90 bp | TTAAATAAAACTGCTACTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCAGCAGTTCTATGGGCTTaGGTTCTTCTTCCTCAGTTT | + |
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Preference number: 5 (lower is better) Translates to: LNKTATEFKDVPNVHASSAVLWA*VLLPQF Trigger: AAACTGAGGAAGAAGAACCAAAGCCCATAGAACTGC...TGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAGTAGCAGTTTTATTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105230.4 ENSMUST00000220381.2 |
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| CDS-3UTR CAA 90 bp | GAGCAGTTAAATAAAACTGCTACTGAATTCAAGGATGTACCAAACGTACATGCTAGGTTAACCATAGGCTaGGTGTCAGATGATAAACCT | + |
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Preference number: 5 (lower is better) Translates to: EQLNKTATEFKDVPNVHARLTIG*VSDDKP Trigger: AGGTTTATCATCTGACACCAAGCCTATGGTTAACCT...AGCATGTACGTTTGGTACATCCTTGAATTCAGTAGCAGTTTTATTTAACTGCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105230.4 ENSMUST00000219512.2 |
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| CDS-3UTR CAA 90 bp | TTAAATAAAACTGCTACTGAATTCAAGGATGTACCAAACGTACATGCTTCCTCAGAGAAACCCATAGGCTaGGTGTCAGATGATAAACCT | + |
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Preference number: 5 (lower is better) Translates to: LNKTATEFKDVPNVHASSEKPIG*VSDDKP Trigger: AGGTTTATCATCTGACACCAAGCCTATGGGTTTCTC...TGAGGAAGCATGTACGTTTGGTACATCCTTGAATTCAGTAGCAGTTTTATTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220381.2 |
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| CDS GCA 72 bp | TATCCCAGATGTAATCTTTACCACCTTCTTTTCCGATaGCATATCAACAGCCTTTTCAGGAGGTTCTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: YPRCNLYHLLFR*HINSLFRRFFL Trigger: GAGGAAGAACCTCCTGAAAAGGCTGTTGATATGGCATCGGAAAAGAAGGTGGTAAAGATTACATCTGGGATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105230.4 ENSMUST00000220381.2 |
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