Pregenerated sensors for SARAF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031532Ensembl transcript IDs: ENSMUST00000033933.8, ENSMUST00000239436.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAGCCACCTAGCTCAAGCGGTCTGTGCTCAGTCTCAGCAGGAGGGTaGTCCATTCCTAATGCCCCCTCTGGTATGAAAGGCTTGAGACAC | + |
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Preference number: 1 (lower is better) Translates to: KPPSSSGLCSVSAGG*SIPNAPSGMKGLRH Trigger: GTGTCTCAAGCCTTTCATACCAGAGGGGGCATTAGGAATGGAGCACCCTCCTGCTGAGACTGAGCACAGACCGCTTGAGCTAGGTGGCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR TCA 90 bp | CAGAATCCCCAGGCGCTGACCACCACAGAAGGGTCCAAGCTCTACTaGTCAAGCGATTGCAACCCACAAATCAGCATAATTAGTAGTCGG | + |
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Preference number: 1 (lower is better) Translates to: QNPQALTTTEGSKLY*SSDCNPQISIISSR Trigger: CCGACTACTAATTATGCTGATTTGTGGGTTGCAATCGCTTGATCAGTAGAGCTTGGACCCTTCTGTGGTGGTCAGCGCCTGGGGATTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR TCA 90 bp | GACTCCACAGAGAACTCCATGCTTTTGCGTCTGAATGCTACCACCTaGAAACTGACGTCTAGCGGTTCCAAGCCTTCTGTGCATGTCGTT | + |
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Preference number: 1 (lower is better) Translates to: DSTENSMLLRLNATT*KLTSSGSKPSVHVV Trigger: AACGACATGCACAGAAGGCTTGGAACCGCTAGACGTCAGTTTTCAGGTGGTAGCATTCAGACGCAAAAGCATGGAGTTCTCTGTGGAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR GCA 90 bp | ACACAAGCACAATGTCAGCATTCCACAGTGGCCATCGCTTTGAACTaGATGTTACATTATCATACAAACCATAGCATTTTGTCACATATC | + |
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Preference number: 1 (lower is better) Translates to: TQAQCQHSTVAIALN*MLHYHTNHSILSHI Trigger: GATATGTGACAAAATGCTATGGTTTGTATGATAATGTAACATGCAGTTCAAAGCGATGGCCACTGTGGAATGCTGACATTGTGCTTGTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR-3UTR GCA 90 bp | TACCCTTCCTGTGAAAGGTCAGAATCCCCAGGCGCTGACCACCACAGAAGGGTCAGCTCAAGCGGTCTGTaGTCAGTCTCAGCAGGAGGG | + |
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Preference number: 2 (lower is better) Translates to: YPSCERSESPGADHHRRVSSSGL*SVSAGG Trigger: CCCTCCTGCTGAGACTGAGCACAGACCGCTTGAGCT...GACCCTTCTGTGGTGGTCAGCGCCTGGGGATTCTGACCTTTCACAGGAAGGGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR CAA 90 bp | GCAGGAGGGTGCTCCATTCCTAATGCCCCCTCTGGTATGAAAGGCTaGAGACACAAGCACAATGTCAGCATTCCACAGTGGCCATCGCTT | + |
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Preference number: 2 (lower is better) Translates to: AGGCSIPNAPSGMKG*RHKHNVSIPQWPSL Trigger: AAGCGATGGCCACTGTGGAATGCTGACATTGTGCTTGTGTCTCAAGCCTTTCATACCAGAGGGGGCATTAGGAATGGAGCACCCTCCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR-3UTR CCA 90 bp | CTGACGTCTAGCGGTTCCAAGCCTTCTGTGCATGTCGTTTGCTTTCTACCCTTCTCACATATCAACTCTTaGCCACAAACAACGGGACAC | + |
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Preference number: 2 (lower is better) Translates to: LTSSGSKPSVHVVCFLPFSHINS*PQTTGH Trigger: GTGTCCCGTTGTTTGTGGCCAAGAGTTGATATGTGA...GAAGGGTAGAAAGCAAACGACATGCACAGAAGGCTTGGAACCGCTAGACGTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR-3UTR GCA 90 bp | TGCATGTCGTTTGCTTTCTACCCTTCCTGTGAAAGGTCAGAATCCCCAGGCGCTACAAATCAGAAACTTTaGATCCAGTGTTTGCCTTCA | + |
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Preference number: 2 (lower is better) Translates to: CMSFAFYPSCERSESPGATNQKL*IQCLPS Trigger: TGAAGGCAAACACTGGATGCAAAGTTTCTGATTTGT...AGCGCCTGGGGATTCTGACCTTTCACAGGAAGGGTAGAAAGCAAACGACATGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR-3UTR GCA 90 bp | CTTCTGTGCATGTCGTTTGCTTTCTACCCTTCCTGTGAAAGGTCAGAATCCCCAGCCATCGCTTTGAACTaGATGTTACATTATCATACA | + |
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Preference number: 2 (lower is better) Translates to: LLCMSFAFYPSCERSESPAIALN*MLHYHT Trigger: TGTATGATAATGTAACATGCAGTTCAAAGCGATGGC...TGGGGATTCTGACCTTTCACAGGAAGGGTAGAAAGCAAACGACATGCACAGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR GCA 72 bp | AGCTCAAGCGGTCTGTGCTCAGTCTCAGCAGGAGGGTaGTCCATTCCTAATGCCCCCTCTGGTATGAAAGGC | + |
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Preference number: 3 (lower is better) Translates to: SSSGLCSVSAGG*SIPNAPSGMKG Trigger: GCCTTTCATACCAGAGGGGGCATTAGGAATGGAGCACCCTCCTGCTGAGACTGAGCACAGACCGCTTGAGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR-3UTR CAA 90 bp | GCATGTCGTTTGCTTTCTACCCTTCCTGTGAAAGGTCAGAATCCCCAGGCGCTGGTCACATATCAACTCTaGGCCACAAACAACGGGACA | + |
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Preference number: 3 (lower is better) Translates to: ACRLLSTLPVKGQNPQALVTYQL*ATNNGT Trigger: TGTCCCGTTGTTTGTGGCCAAGAGTTGATATGTGAC...CAGCGCCTGGGGATTCTGACCTTTCACAGGAAGGGTAGAAAGCAAACGACATGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR-3UTR CAA 90 bp | GCATGTCGTTTGCTTTCTACCCTTCCTGTGAAAGGTCAGAATCCCCAGGCGCTGCTACTGATCAAGCGATaGCAACCCACAAATCAGCAT | + |
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Preference number: 3 (lower is better) Translates to: ACRLLSTLPVKGQNPQALLLIKR*QPTNQH Trigger: ATGCTGATTTGTGGGTTGCAATCGCTTGATCAGTAG...CAGCGCCTGGGGATTCTGACCTTTCACAGGAAGGGTAGAAAGCAAACGACATGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR-3UTR CAA 90 bp | CTGACGTCTAGCGGTTCCAAGCCTTCTGTGCATGTCGTTTGCTTTCTACCCTTCGACAAATCAGAAACTTaGCATCCAGTGTTTGCCTTC | + |
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Preference number: 3 (lower is better) Translates to: LTSSGSKPSVHVVCFLPFDKSET*HPVFAF Trigger: GAAGGCAAACACTGGATGCAAAGTTTCTGATTTGTC...GAAGGGTAGAAAGCAAACGACATGCACAGAAGGCTTGGAACCGCTAGACGTCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR-3UTR CAA 90 bp | CACCACAGAAGGGTCCAAGCTCTACTGATCAAGCGATTGCAACCCACAAATCAGTCTGGTATGAAAGGCTaGAGACACAAGCACAATGTC | + |
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Preference number: 3 (lower is better) Translates to: HHRRVQALLIKRLQPTNQSGMKG*RHKHNV Trigger: GACATTGTGCTTGTGTCTCAAGCCTTTCATACCAGA...CTGATTTGTGGGTTGCAATCGCTTGATCAGTAGAGCTTGGACCCTTCTGTGGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR-3UTR CAA 90 bp | CTTGAGACACAAGCACAATGTCAGCATTCCACAGTGGCCATCGCTTTGAACTGCGACAAATCAGAAACTTaGCATCCAGTGTTTGCCTTC | + |
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Preference number: 3 (lower is better) Translates to: LETQAQCQHSTVAIALNCDKSET*HPVFAF Trigger: GAAGGCAAACACTGGATGCAAAGTTTCTGATTTGTC...GCAGTTCAAAGCGATGGCCACTGTGGAATGCTGACATTGTGCTTGTGTCTCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR-3UTR CAA 90 bp | CTGACGTCTAGCGGTTCCAAGCCTTCTGTGCATGTCGTTTGCTTTCTACCCTTCACTGGGCTTAAATGTTaGAAGAACAGCAAACACCAA | + |
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Preference number: 3 (lower is better) Translates to: LTSSGSKPSVHVVCFLPFTGLKC*KNSKHQ Trigger: TTGGTGTTTGCTGTTCTTCAAACATTTAAGCCCAGT...GAAGGGTAGAAAGCAAACGACATGCACAGAAGGCTTGGAACCGCTAGACGTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR-3UTR CAA 90 bp | TGCATGTCGTTTGCTTTCTACCCTTCCTGTGAAAGGTCAGAATCCCCAGGCGCTACTGGGCTTAAATGTTaGAAGAACAGCAAACACCAA | + |
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Preference number: 3 (lower is better) Translates to: CMSFAFYPSCERSESPGATGLKC*KNSKHQ Trigger: TTGGTGTTTGCTGTTCTTCAAACATTTAAGCCCAGT...AGCGCCTGGGGATTCTGACCTTTCACAGGAAGGGTAGAAAGCAAACGACATGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR-3UTR CAA 90 bp | ACAGTGGCCATCGCTTTGAACTGCATGTTACATTATCATACAAACCATAGCATTGTCACATATCAACTCTaGGCCACAAACAACGGGACA | + |
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Preference number: 3 (lower is better) Translates to: TVAIALNCMLHYHTNHSIVTYQL*ATNNGT Trigger: TGTCCCGTTGTTTGTGGCCAAGAGTTGATATGTGAC...AATGCTATGGTTTGTATGATAATGTAACATGCAGTTCAAAGCGATGGCCACTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR TCA 90 bp | TCTACCCTTCCTGTGAAAGGTCAGAATCCCCAGGCGCTGACCACCACAGAAGGGAGCCATGGCGCTGGGTaGAGACGGCGCTCGGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: STLPVKGQNPQALTTTEGSHGAG*RRRSVA Trigger: GGCCACCGAGCGCCGTCTTCACCCAGCGCCATGGCT...CCCTTCTGTGGTGGTCAGCGCCTGGGGATTCTGACCTTTCACAGGAAGGGTAGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239436.2 |
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| CDS-3UTR CCA 90 bp | TGCATGTCGTTTGCTTTCTACCCTTCCTGTGAAAGGTCAGAATCCCCAGGCGCTGGCGGAGGCGACCCCTaGCCATCGCTGAGGAACAGC | + |
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Preference number: 4 (lower is better) Translates to: CMSFAFYPSCERSESPGAGGGDP*PSLRNS Trigger: GCTGTTCCTCAGCGATGGCCAGGGGTCGCCTCCGCC...AGCGCCTGGGGATTCTGACCTTTCACAGGAAGGGTAGAAAGCAAACGACATGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR TCA 90 bp | CCTTCCTGTGAAAGGTCAGAATCCCCAGGCGCTGACCACCACAGAAGGGTCCAAAGCCGCAGGAACCCCTaGGGACATACTGGTCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: PSCERSESPGADHHRRVQSRRNP*GHTGLQ Trigger: CTGAAGACCAGTATGTCCTCAGGGGTTCCTGCGGCT...TTGGACCCTTCTGTGGTGGTCAGCGCCTGGGGATTCTGACCTTTCACAGGAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR GCA 90 bp | CCTTCCTGTGAAAGGTCAGAATCCCCAGGCGCTGACCACCACAGAAGGGTCCAATCAGAGAAGCCCTGGTaGTTTCCAGACTCCTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: PSCERSESPGADHHRRVQSEKPW*FPDSFS Trigger: ACTGAAGGAGTCTGGAAAGCACCAGGGCTTCTCTGA...TTGGACCCTTCTGTGGTGGTCAGCGCCTGGGGATTCTGACCTTTCACAGGAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR CCA 90 bp | ACATATCAACTCTTGGCCACAAACAACGGGACACGAAAAGCTACACAAGGACCACCAGCCTCCGGGAGGTaGTGTAGCGGTCGGAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: TYQLLATNNGTRKATQGPPASGR*CSGRSR Trigger: TCTACTCCGACCGCTACACCACCTCCCGGAGGCTGG...TGGTCCTTGTGTAGCTTTTCGTGTCCCGTTGTTTGTGGCCAAGAGTTGATATGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR TCA 90 bp | AATGCCCCCTCTGGTATGAAAGGCTTGAGACACAAGCACAATGTCAGCATTCCAAGCCGCAGGAACCCCTaGGGACATACTGGTCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: NAPSGMKGLRHKHNVSIPSRRNP*GHTGLQ Trigger: CTGAAGACCAGTATGTCCTCAGGGGTTCCTGCGGCT...TGGAATGCTGACATTGTGCTTGTGTCTCAAGCCTTTCATACCAGAGGGGGCATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR GCA 90 bp | GCGGTTCCAAGCCTTCTGTGCATGTCGTTTGCTTTCTACCCTTCCTGTGAAAGGGTCTGCATTAGAGGATaGACAATAGCTCCCTGCGCC | + |
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Preference number: 4 (lower is better) Translates to: AVPSLLCMSFAFYPSCERVCIRG*TIAPCA Trigger: GGCGCAGGGAGCTATTGTGCATCCTCTAATGCAGAC...CCTTTCACAGGAAGGGTAGAAAGCAAACGACATGCACAGAAGGCTTGGAACCGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR CCA 90 bp | CAAACCATAGCATTTTGTCACATATCAACTCTTGGCCACAAACAACGGGACACGCCAGCCTCCGGGAGGTaGTGTAGCGGTCGGAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: QTIAFCHISTLGHKQRDTPASGR*CSGRSR Trigger: TCTACTCCGACCGCTACACCACCTCCCGGAGGCTGG...CGTGTCCCGTTGTTTGTGGCCAAGAGTTGATATGTGACAAAATGCTATGGTTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR CCA 90 bp | TCTGGTATGAAAGGCTTGAGACACAAGCACAATGTCAGCATTCCACAGTGGCCATCCCAGCCTTTGTTCTaGCACTGTATCACCCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: SGMKGLRHKHNVSIPQWPSQPLF*HCITLG Trigger: CCCCAGGGTGATACAGTGCCAGAACAAAGGCTGGGA...TGGCCACTGTGGAATGCTGACATTGTGCTTGTGTCTCAAGCCTTTCATACCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR TCA 90 bp | CTACACAAGGACCAAACACCACACAACTTTTGGTTATTCCCATTAGCCAGGTGTATGGTACCACGAGTCTaGGAAAGGCGTCGCCGCTCT | + |
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Preference number: 4 (lower is better) Translates to: LHKDQTPHNFWLFPLARCMVPRV*ERRRRS Trigger: AGAGCGGCGACGCCTTTCTCAGACTCGTGGTACCAT...ACACCTGGCTAATGGGAATAACCAAAAGTTGTGTGGTGTTTGGTCCTTGTGTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR GCA 90 bp | AATGCCCCCTCTGGTATGAAAGGCTTGAGACACAAGCACAATGTCAGCATTCCAGTCTGCATTAGAGGATaGACAATAGCTCCCTGCGCC | + |
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Preference number: 4 (lower is better) Translates to: NAPSGMKGLRHKHNVSIPVCIRG*TIAPCA Trigger: GGCGCAGGGAGCTATTGTGCATCCTCTAATGCAGAC...TGGAATGCTGACATTGTGCTTGTGTCTCAAGCCTTTCATACCAGAGGGGGCATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR CCA 90 bp | TGTCACATATCAACTCTTGGCCACAAACAACGGGACACGAAAAGCTACACAAGGTCCCAGCCTTTGTTCTaGCACTGTATCACCCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: CHISTLGHKQRDTKSYTRSQPLF*HCITLG Trigger: CCCCAGGGTGATACAGTGCCAGAACAAAGGCTGGGA...CCTTGTGTAGCTTTTCGTGTCCCGTTGTTTGTGGCCAAGAGTTGATATGTGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| 3UTR CAA 72 bp | TGCTCCATTCCTAATGCCCCCTCTGGTATGAAAGGCTaGAGACACAAGCACAATGTCAGCATTCCACAGTGG | + |
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Preference number: 4 (lower is better) Translates to: CSIPNAPSGMKG*RHKHNVSIPQW Trigger: CCACTGTGGAATGCTGACATTGTGCTTGTGTCTCAAGCCTTTCATACCAGAGGGGGCATTAGGAATGGAGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR TCA 90 bp | GCGGTTCCAAGCCTTCTGTGCATGTCGTTTGCTTTCTACCCTTCCTGTGAAAGGAAAGCCACAGGAATCTaGGGAGTACAGCTTGTGATA | + |
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Preference number: 4 (lower is better) Translates to: AVPSLLCMSFAFYPSCERKATGI*GVQLVI Trigger: TATCACAAGCTGTACTCCTCAGATTCCTGTGGCTTT...CCTTTCACAGGAAGGGTAGAAAGCAAACGACATGCACAGAAGGCTTGGAACCGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR GCA 90 bp | CTACACAAGGACCAAACACCACACAACTTTTGGTTATTCCCATTAGCCAGGTGTTCAGAGAAGCCCTGGTaGTTTCCAGACTCCTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: LHKDQTPHNFWLFPLARCSEKPW*FPDSFS Trigger: ACTGAAGGAGTCTGGAAAGCACCAGGGCTTCTCTGA...ACACCTGGCTAATGGGAATAACCAAAAGTTGTGTGGTGTTTGGTCCTTGTGTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR TCA 90 bp | CTACACAAGGACCAAACACCACACAACTTTTGGTTATTCCCATTAGCCAGGTGTAAAGCCACAGGAATCTaGGGAGTACAGCTTGTGATA | + |
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Preference number: 4 (lower is better) Translates to: LHKDQTPHNFWLFPLARCKATGI*GVQLVI Trigger: TATCACAAGCTGTACTCCTCAGATTCCTGTGGCTTT...ACACCTGGCTAATGGGAATAACCAAAAGTTGTGTGGTGTTTGGTCCTTGTGTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR GCA 90 bp | CTGACGTCTAGCGGTTCCAAGCCTTCTGTGCATGTCGTTTGCTTTCTACCCTTCTTTGCCAAATTTGTATaGAATATCCAAGTCGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: LTSSGSKPSVHVVCFLPFFAKFV*NIQVGL Trigger: AAGACCGACTTGGATATTGCATACAAATTTGGCAAA...GAAGGGTAGAAAGCAAACGACATGCACAGAAGGCTTGGAACCGCTAGACGTCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR GCA 90 bp | CACAGAGAACTCCATGCTTTTGCGTCTGAATGCTACCACCTGAAAACTGACGTCGAGAACAAACAGTACTaGAATGGTAATAAAGCCACA | + |
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Preference number: 4 (lower is better) Translates to: HRELHAFASECYHLKTDVENKQY*NGNKAT Trigger: TGTGGCTTTATTACCATTGCAGTACTGTTTGTTCTC...GACGTCAGTTTTCAGGTGGTAGCATTCAGACGCAAAAGCATGGAGTTCTCTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR GCA 90 bp | CAAACCATAGCATTTTGTCACATATCAACTCTTGGCCACAAACAACGGGACACGTTTGCCAAATTTGTATaGAATATCCAAGTCGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: QTIAFCHISTLGHKQRDTFAKFV*NIQVGL Trigger: AAGACCGACTTGGATATTGCATACAAATTTGGCAAA...CGTGTCCCGTTGTTTGTGGCCAAGAGTTGATATGTGACAAAATGCTATGGTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS CCA 90 bp | GCGGGCAGCGCAGGGCTCTCGGGCGGCCGACAGCGGCCACAGCCATaGCGCTGGGTGAAGACGGCGCTCGGTGGCCCGAGACCCGCTGCG | + |
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Preference number: 5 (lower is better) Translates to: AGSAGLSGGRQRPQP*RWVKTALGGPRPAA Trigger: CGCAGCGGGTCTCGGGCCACCGAGCGCCGTCTTCACCCAGCGCCATGGCTGTGGCCGCTGTCGGCCGCCCGAGAGCCCTGCGCTGCCCGC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239436.2 |
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| CDS TCA 90 bp | GACTTAAAGCCCGGAGGAGGCGCCCCTGCGGCACTGGCAAACCTCTaGGAGTGCTCTGAGTATGGCGGGTGCTCAGAATACGGCGGAGGC | + |
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Preference number: 5 (lower is better) Translates to: DLKPGGGAPAALANL*ECSEYGGCSEYGGG Trigger: GCCTCCGCCGTATTCTGAGCACCCGCCATACTCAGAGCACTCTCAGAGGTTTGCCAGTGCCGCAGGGGCGCCTCCTCCGGGCTTTAAGTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS GCA 90 bp | GCAGTCCTCCAGCTCCCAGGCCAGACCAGAACCCCGGCCCTGAACTaGCATAGCCTTGGCCTCCAAAAGCACTCCCGAAGCCAGAGCTTG | + |
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Preference number: 5 (lower is better) Translates to: AVLQLPGQTRTPALN*HSLGLQKHSRSQSL Trigger: CAAGCTCTGGCTTCGGGAGTGCTTTTGGAGGCCAAGGCTATGGCAGTTCAGGGCCGGGGTTCTGGTCTGGCCTGGGAGCTGGAGGACTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS TCA 90 bp | TGCATTAGAGGATGCACAATAGCTCCCTGCGCCTCCACCCAGGGGTaGGTAGGCCCGACTGTTCCAGGCCCCAGAGTGGGAAGGAGGGTA | + |
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Preference number: 5 (lower is better) Translates to: CIRGCTIAPCASTQG*VGPTVPGPRVGRRV Trigger: TACCCTCCTTCCCACTCTGGGGCCTGGAACAGTCGGGCCTACTCACCCCTGGGTGGAGGCGCAGGGAGCTATTGTGCATCCTCTAATGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS CCA 90 bp | GGTATAGGCCTCACAACCGGCGGTGCCTCCAACACACTTCAACTGTaGGATAGGGTCCAGCCTCCGGGAGGTGGTGTAGCGGTCGGAGTA | + |
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Preference number: 5 (lower is better) Translates to: GIGLTTGGASNTLQL*DRVQPPGGGVAVGV Trigger: TACTCCGACCGCTACACCACCTCCCGGAGGCTGGACCCTATCCCACAGTTGAAGTGTGTTGGAGGCACCGCCGGTTGTGAGGCCTATACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS TCA 90 bp | GGCCCCAGAGTGGGAAGGAGGGTAGGCTGGATGGTACCACGAGTCTaGGAAAGGCGTCGCCGCTCTGTTGCTGCCAAACAAATACCCAAG | + |
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Preference number: 5 (lower is better) Translates to: GPRVGRRVGWMVPRV*ERRRRSVAAKQIPK Trigger: CTTGGGTATTTGTTTGGCAGCAACAGAGCGGCGACGCCTTTCTCAGACTCGTGGTACCATCCAGCCTACCCTCCTTCCCACTCTGGGGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS CCA 90 bp | GTACATCGTAGCCATCCCAGCCTTTGTTCTGGCACTGTATCACCCTaGGGGTATAGGCCTCACAACCGGCGGTGCCTCCAACACACTTCA | + |
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Preference number: 5 (lower is better) Translates to: VHRSHPSLCSGTVSP*GYRPHNRRCLQHTS Trigger: TGAAGTGTGTTGGAGGCACCGCCGGTTGTGAGGCCTATACCCCCAGGGTGATACAGTGCCAGAACAAAGGCTGGGATGGCTACGATGTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR CAA 90 bp | TCTACCCTTCCTGTGAAAGGTCAGAATCCCCAGGCGCTGACCACCACAGAAGGGTCCCGAAGCCAGAGCTaGCACCATAGCCAGTATTCT | + |
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Preference number: 5 (lower is better) Translates to: STLPVKGQNPQALTTTEGSRSQS*HHSQYS Trigger: AGAATACTGGCTATGGTGCAAGCTCTGGCTTCGGGA...CCCTTCTGTGGTGGTCAGCGCCTGGGGATTCTGACCTTTCACAGGAAGGGTAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS TCA 90 bp | CCAGCTCTGTGTAATCTAAGTTGTACTCCAAGCCGCAGGAACCCCTaGGGACATACTGGTCTTCAGAGGACTCGTAGCCTTCACAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: PALCNLSCTPSRRNP*GHTGLQRTRSLHSS Trigger: TGAGCTGTGAAGGCTACGAGTCCTCTGAAGACCAGTATGTCCTCAGGGGTTCCTGCGGCTTGGAGTACAACTTAGATTACACAGAGCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS GCA 90 bp | ACTGCCATAGCCTTGGCCTCCAAAAGCACTCCCGAAGCCAGAGCTTaGACCATAGCCAGTATTCTGTGGTCCTGTGAACTCCGACTTAAA | + |
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Preference number: 5 (lower is better) Translates to: TAIALASKSTPEARA*TIASILWSCELRLK Trigger: TTTAAGTCGGAGTTCACAGGACCACAGAATACTGGCTATGGTGCAAGCTCTGGCTTCGGGAGTGCTTTTGGAGGCCAAGGCTATGGCAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR CAA 90 bp | TGTCACATATCAACTCTTGGCCACAAACAACGGGACACGAAAAGCTACACAAGGGGCGTCGCCGCTCTGTaGCTGCCAAACAAATACCCA | + |
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Preference number: 5 (lower is better) Translates to: CHISTLGHKQRDTKSYTRGVAAL*LPNKYP Trigger: TGGGTATTTGTTTGGCAGCAACAGAGCGGCGACGCC...CCTTGTGTAGCTTTTCGTGTCCCGTTGTTTGTGGCCAAGAGTTGATATGTGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR CAA 90 bp | CAAACCATAGCATTTTGTCACATATCAACTCTTGGCCACAAACAACGGGACACGTCCCGAAGCCAGAGCTaGCACCATAGCCAGTATTCT | + |
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Preference number: 5 (lower is better) Translates to: QTIAFCHISTLGHKQRDTSRSQS*HHSQYS Trigger: AGAATACTGGCTATGGTGCAAGCTCTGGCTTCGGGA...CGTGTCCCGTTGTTTGTGGCCAAGAGTTGATATGTGACAAAATGCTATGGTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS GCA 90 bp | GGACTCGTAGCCTTCACAGCTCACCACAGTTTTGCCAAATTTGTATaGAATATCCAAGTCGGTCTTACATTCCCACTGTACATCGTAGCC | + |
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Preference number: 5 (lower is better) Translates to: GLVAFTAHHSFAKFV*NIQVGLTFPLYIVA Trigger: GGCTACGATGTACAGTGGGAATGTAAGACCGACTTGGATATTGCATACAAATTTGGCAAAACTGTGGTGAGCTGTGAAGGCTACGAGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS GCA 90 bp | ACTGGTCTTCAGAGGACTCGTAGCCTTCACAGCTCACCACAGTTTTaGCAAATTTGTATGCAATATCCAAGTCGGTCTTACATTCCCACT | + |
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Preference number: 5 (lower is better) Translates to: TGLQRTRSLHSSPQF*QICMQYPSRSYIPT Trigger: AGTGGGAATGTAAGACCGACTTGGATATTGCATACAAATTTGGCAAAACTGTGGTGAGCTGTGAAGGCTACGAGTCCTCTGAAGACCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR CAA 90 bp | CTGACGTCTAGCGGTTCCAAGCCTTCTGTGCATGTCGTTTGCTTTCTACCCTTCACAGTTTTGCCAAATTaGTATGCAATATCCAAGTCG | + |
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Preference number: 5 (lower is better) Translates to: LTSSGSKPSVHVVCFLPFTVLPN*YAISKS Trigger: CGACTTGGATATTGCATACAAATTTGGCAAAACTGT...GAAGGGTAGAAAGCAAACGACATGCACAGAAGGCTTGGAACCGCTAGACGTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS-3UTR CAA 90 bp | ACAGTGGCCATCGCTTTGAACTGCATGTTACATTATCATACAAACCATAGCATTACAGTTTTGCCAAATTaGTATGCAATATCCAAGTCG | + |
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Preference number: 5 (lower is better) Translates to: TVAIALNCMLHYHTNHSITVLPN*YAISKS Trigger: CGACTTGGATATTGCATACAAATTTGGCAAAACTGT...AATGCTATGGTTTGTATGATAATGTAACATGCAGTTCAAAGCGATGGCCACTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS TCA 72 bp | CGGGCGGCCGACAGCGGCCACAGCCATGGCGCTGGGTaGAGACGGCGCTCGGTGGCCCGAGACCCGCTGCGG | + |
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Preference number: 6 (lower is better) Translates to: RAADSGHSHGAG*RRRSVARDPLR Trigger: CCGCAGCGGGTCTCGGGCCACCGAGCGCCGTCTTCACCCAGCGCCATGGCTGTGGCCGCTGTCGGCCGCCCG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239436.2 |
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| CDS GCA 72 bp | CAGCTCCCAGGCCAGACCAGAACCCCGGCCCTGAACTaGCATAGCCTTGGCCTCCAAAAGCACTCCCGAAGC | + |
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Preference number: 6 (lower is better) Translates to: QLPGQTRTPALN*HSLGLQKHSRS Trigger: GCTTCGGGAGTGCTTTTGGAGGCCAAGGCTATGGCAGTTCAGGGCCGGGGTTCTGGTCTGGCCTGGGAGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS CCA 72 bp | CTCACAACCGGCGGTGCCTCCAACACACTTCAACTGTaGGATAGGGTCCAGCCTCCGGGAGGTGGTGTAGCG | + |
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Preference number: 6 (lower is better) Translates to: LTTGGASNTLQL*DRVQPPGGGVA Trigger: CGCTACACCACCTCCCGGAGGCTGGACCCTATCCCACAGTTGAAGTGTGTTGGAGGCACCGCCGGTTGTGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS CCA 72 bp | AGCCATCCCAGCCTTTGTTCTGGCACTGTATCACCCTaGGGGTATAGGCCTCACAACCGGCGGTGCCTCCAA | + |
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Preference number: 6 (lower is better) Translates to: SHPSLCSGTVSP*GYRPHNRRCLQ Trigger: TTGGAGGCACCGCCGGTTGTGAGGCCTATACCCCCAGGGTGATACAGTGCCAGAACAAAGGCTGGGATGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS TCA 72 bp | GCTCAGAATACGGCGGAGGCGACCCCTGGCCATCGCTaGGGAACAGCTTGTAAACCGCAAAGGCGAGAACAA | + |
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Preference number: 6 (lower is better) Translates to: AQNTAEATPGHR*GTACKPQRREQ Trigger: TTGTTCTCGCCTTTGCGGTTTACAAGCTGTTCCTCAGCGATGGCCAGGGGTCGCCTCCGCCGTATTCTGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS TCA 72 bp | GTGGGAAGGAGGGTAGGCTGGATGGTACCACGAGTCTaGGAAAGGCGTCGCCGCTCTGTTGCTGCCAAACAA | + |
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Preference number: 6 (lower is better) Translates to: VGRRVGWMVPRV*ERRRRSVAAKQ Trigger: TTGTTTGGCAGCAACAGAGCGGCGACGCCTTTCTCAGACTCGTGGTACCATCCAGCCTACCCTCCTTCCCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS GCA 72 bp | GCCTTGGCCTCCAAAAGCACTCCCGAAGCCAGAGCTTaGACCATAGCCAGTATTCTGTGGTCCTGTGAACTC | + |
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Preference number: 6 (lower is better) Translates to: ALASKSTPEARA*TIASILWSCEL Trigger: GAGTTCACAGGACCACAGAATACTGGCTATGGTGCAAGCTCTGGCTTCGGGAGTGCTTTTGGAGGCCAAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS GCA 72 bp | CAGAGGACTCGTAGCCTTCACAGCTCACCACAGTTTTaGCAAATTTGTATGCAATATCCAAGTCGGTCTTAC | + |
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Preference number: 6 (lower is better) Translates to: QRTRSLHSSPQF*QICMQYPSRSY Trigger: GTAAGACCGACTTGGATATTGCATACAAATTTGGCAAAACTGTGGTGAGCTGTGAAGGCTACGAGTCCTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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| CDS GCA 72 bp | GCCTTCACAGCTCACCACAGTTTTGCCAAATTTGTATaGAATATCCAAGTCGGTCTTACATTCCCACTGTAC | + |
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Preference number: 6 (lower is better) Translates to: AFTAHHSFAKFV*NIQVGLTFPLY Trigger: GTACAGTGGGAATGTAAGACCGACTTGGATATTGCATACAAATTTGGCAAAACTGTGGTGAGCTGTGAAGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033933.8 ENSMUST00000239436.2 |
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