Pregenerated sensors for SAR1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020386Ensembl transcript IDs: ENSMUST00000020653.6
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GAGTTTGTTTTATTGCATGACGTTTGCATAAGAAAAAGTAGTCTTGGAAACCGTTGGGGGATGGATCTCTaGGGGCTGGAAGTGTGTGGG | + |
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Preference number: 2 (lower is better) Translates to: EFVLLHDVCIRKSSLGNRWGMDL*GLEVCG Trigger: CCCACACACTTCCAGCCCTCAGAGATCCATCCCCCA...ACGGTTTCCAAGACTACTTTTTCTTATGCAAACGTCATGCAATAAAACAAACTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000020653.6 |
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| 3UTR-3UTR TCA 90 bp | GTTTTATTGCATGACGTTTGCATAAGAAAAAGTAGTCTTGGAAACCGTAAGGCAGTGCTTCAAATGTACTaGTGGGAAGCTGATCTTTAT | + |
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Preference number: 2 (lower is better) Translates to: VLLHDVCIRKSSLGNRKAVLQMY*WEADLY Trigger: ATAAAGATCAGCTTCCCATCAGTACATTTGAAGCAC...TGCCTTACGGTTTCCAAGACTACTTTTTCTTATGCAAACGTCATGCAATAAAAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020653.6 |
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| 3UTR-3UTR GCA 90 bp | GTTTTATTGCATGACGTTTGCATAAGAAAAAGTAGTCTTGGAAACCGTAAGGCAATTGAATTCAAGTTATaGATGTTGGGGGATGGATCT | + |
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Preference number: 2 (lower is better) Translates to: VLLHDVCIRKSSLGNRKAIEFKL*MLGDGS Trigger: AGATCCATCCCCCAACATGCATAACTTGAATTCAAT...TGCCTTACGGTTTCCAAGACTACTTTTTCTTATGCAAACGTCATGCAATAAAAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000020653.6 |
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| 3UTR-3UTR GCA 90 bp | GTTTTATTGCATGACGTTTGCATAAGAAAAAGTAGTCTTGGAAACCGTAAGGCACACATCGTTAAAAAGTaGTTCAAATGTACTGATGGG | + |
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Preference number: 2 (lower is better) Translates to: VLLHDVCIRKSSLGNRKAHIVKK*FKCTDG Trigger: CCCATCAGTACATTTGAAGCACTTTTTAACGATGTG...TGCCTTACGGTTTCCAAGACTACTTTTTCTTATGCAAACGTCATGCAATAAAAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000020653.6 |
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| 3UTR-3UTR GCA 90 bp | GAGTTTGTTTTATTGCATGACGTTTGCATAAGAAAAAGTAGTCTTGGAAACCGTAAACTTGAATCAGTTTaGAATTCCCACTCAGGTAGA | + |
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Preference number: 2 (lower is better) Translates to: EFVLLHDVCIRKSSLGNRKLESV*NSHSGR Trigger: TCTACCTGAGTGGGAATTGCAAACTGATTCAAGTTT...ACGGTTTCCAAGACTACTTTTTCTTATGCAAACGTCATGCAATAAAACAAACTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020653.6 |
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| CDS-3UTR TCA 90 bp | TCTGAAACCAACAAAAGTCTATTGAATTCAAGTTATGCATGTTGGGGGATGGATTTAGCACACTGCACATaGACACTTCCAGAGGCCGGG | + |
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Preference number: 4 (lower is better) Translates to: SETNKSLLNSSYACWGMDLAHCT*TLPEAG Trigger: CCCGGCCTCTGGAAGTGTTCATGTGCAGTGTGCTAA...ATCCATCCCCCAACATGCATAACTTGAATTCAATAGACTTTTGTTGGTTTCAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020653.6 |
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| 3UTR CAA 72 bp | AACCAACAAAAGTCTATTGAATTCAAGTTATGCATGTaGGGGGATGGATCTCTGAGGGCTGGAAGTGTGTGG | + |
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Preference number: 4 (lower is better) Translates to: NQQKSIEFKLCM*GDGSLRAGSVW Trigger: CCACACACTTCCAGCCCTCAGAGATCCATCCCCCAACATGCATAACTTGAATTCAATAGACTTTTGTTGGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020653.6 |
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| CDS-3UTR GCA 90 bp | AAGTCTATTGAATTCAAGTTATGCATGTTGGGGGATGGATCTCTGAGGGCTGGACAGCCTTTCATGGTCTaGACAATCCACAAGAAATAC | + |
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Preference number: 4 (lower is better) Translates to: KSIEFKLCMLGDGSLRAGQPFMV*TIHKKY Trigger: GTATTTCTTGTGGATTGTGCAGACCATGAAAGGCTG...TCCAGCCCTCAGAGATCCATCCCCCAACATGCATAACTTGAATTCAATAGACTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020653.6 |
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| CDS-3UTR TCA 90 bp | TCTGAAACCAACAAAAGTCTATTGAATTCAAGTTATGCATGTTGGGGGATGGATGTTCAGCTCCTTCAGTaGCACACTACCCTTTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: SETNKSLLNSSYACWGMDVQLLQ*HTTLSC Trigger: ACAGGAAAGGGTAGTGTGTCACTGAAGGAGCTGAAC...ATCCATCCCCCAACATGCATAACTTGAATTCAATAGACTTTTGTTGGTTTCAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020653.6 |
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| CDS-3UTR TCA 90 bp | GAGTTTGTTTTATTGCATGACGTTTGCATAAGAAAAAGTAGTCTTGGAAACCGTGTAACCTCTCTTCACTaGTGGCTTCAGGTCTGTCGA | + |
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Preference number: 4 (lower is better) Translates to: EFVLLHDVCIRKSSLGNRVTSLH*WLQVCR Trigger: TCGACAGACCTGAAGCCATCAGTGAAGAGAGGTTAC...ACGGTTTCCAAGACTACTTTTTCTTATGCAAACGTCATGCAATAAAACAAACTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020653.6 |
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| CDS-3UTR CCA 90 bp | GTTTTATTGCATGACGTTTGCATAAGAAAAAGTAGTCTTGGAAACCGTAAGGCATCTAACAGCCTTTCATaGTCTGCACAATCCACAAGA | + |
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Preference number: 4 (lower is better) Translates to: VLLHDVCIRKSSLGNRKASNSLS*SAQSTR Trigger: TCTTGTGGATTGTGCAGACCATGAAAGGCTGTTAGA...TGCCTTACGGTTTCCAAGACTACTTTTTCTTATGCAAACGTCATGCAATAAAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020653.6 |
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| CDS-3UTR CAA 90 bp | AAGTCTATTGAATTCAAGTTATGCATGTTGGGGGATGGATCTCTGAGGGCTGGAATTAGAATAGGCACGTaGGCAATGGTTTCATCTGTC | + |
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Preference number: 5 (lower is better) Translates to: KSIEFKLCMLGDGSLRAGIRIGT*AMVSSV Trigger: GACAGATGAAACCATTGCCAACGTGCCTATTCTAAT...TCCAGCCCTCAGAGATCCATCCCCCAACATGCATAACTTGAATTCAATAGACTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020653.6 |
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| CDS-3UTR CAA 90 bp | GAGTTTGTTTTATTGCATGACGTTTGCATAAGAAAAAGTAGTCTTGGAAACCGTGCATGTGTAGCAAAGTaGTTTTCCCGGCATTATCCA | + |
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Preference number: 5 (lower is better) Translates to: EFVLLHDVCIRKSSLGNRACVAK*FSRHYP Trigger: TGGATAATGCCGGGAAAACAACTTTGCTACACATGC...ACGGTTTCCAAGACTACTTTTTCTTATGCAAACGTCATGCAATAAAACAAACTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020653.6 |
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| CDS TCA 72 bp | CATATAAACCAAACATCTCTCGTAACCTCTCTTCACTaGTGGCTTCAGGTCTGTCGATCTTATTTCCAAGAA | + |
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Preference number: 6 (lower is better) Translates to: HINQTSLVTSLH*WLQVCRSYFQE Trigger: TTCTTGGAAATAAGATCGACAGACCTGAAGCCATCAGTGAAGAGAGGTTACGAGAGATGTTTGGTTTATATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020653.6 |
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| CDS CAA 90 bp | GCTTCAGGTCTGTCGATCTTATTTCCAAGAATTAGAATAGGCACGTaGGCAATGGTTTCATCTGTCATTAGTGAATCAAGTTCTTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: ASGLSILFPRIRIGT*AMVSSVISESSSSF Trigger: AAAAGAAGAACTTGATTCACTAATGACAGATGAAACCATTGCCAACGTGCCTATTCTAATTCTTGGAAATAAGATCGACAGACCTGAAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020653.6 |
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| CDS CAA 72 bp | CTGTCGATCTTATTTCCAAGAATTAGAATAGGCACGTaGGCAATGGTTTCATCTGTCATTAGTGAATCAAGT | + |
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Preference number: 6 (lower is better) Translates to: LSILFPRIRIGT*AMVSSVISESS Trigger: ACTTGATTCACTAATGACAGATGAAACCATTGCCAACGTGCCTATTCTAATTCTTGGAAATAAGATCGACAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020653.6 |
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