Pregenerated sensors for SAR1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020088Ensembl transcript IDs: ENSMUST00000020285.10, ENSMUST00000218741.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGTTCTCATCCCAGCTGTACGTGGGTGAACGCAGTGCATGCAGTTTaGAGACAGACACCTCACCAAGCCTCTGCATTGGAAACCCGGCAG | + |
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Preference number: 1 (lower is better) Translates to: SSHPSCTWVNAVHAV*RQTPHQASALETRQ Trigger: CTGCCGGGTTTCCAATGCAGAGGCTTGGTGAGGTGTCTGTCTGCAAACTGCATGCACTGCGTTCACCCACGTACAGCTGGGATGAGAACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR GCA 90 bp | GTTCATTGGAGCCCCTGGCCATGGCCCTGGCAGAGTTGCACTTGCTaGAGCAACCTCTTTTGGCCACCTTACTTAAGACGGTGTTCTGTG | + |
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Preference number: 1 (lower is better) Translates to: VHWSPWPWPWQSCTC*SNLFWPPYLRRCSV Trigger: CACAGAACACCGTCTTAAGTAAGGTGGCCAAAAGAGGTTGCTGCAGCAAGTGCAACTCTGCCAGGGCCATGGCCAGGGGCTCCAATGAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR GCA 90 bp | AGAGTCTCAGTTCATTGGAGCCCCTGGCCATGGCCCTGGCAGAGTTaGACTTGCTGCAGCAACCTCTTTTGGCCACCTTACTTAAGACGG | + |
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Preference number: 1 (lower is better) Translates to: RVSVHWSPWPWPWQS*TCCSNLFWPPYLRR Trigger: CCGTCTTAAGTAAGGTGGCCAAAAGAGGTTGCTGCAGCAAGTGCAACTCTGCCAGGGCCATGGCCAGGGGCTCCAATGAACTGAGACTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR GCA 90 bp | TCAGTTCATTGGAGCCCCTGGCCATGGCCCTGGCAGAGTTGCACTTaGTGCAGCAACCTCTTTTGGCCACCTTACTTAAGACGGTGTTCT | + |
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Preference number: 1 (lower is better) Translates to: SVHWSPWPWPWQSCT*CSNLFWPPYLRRCS Trigger: AGAACACCGTCTTAAGTAAGGTGGCCAAAAGAGGTTGCTGCAGCAAGTGCAACTCTGCCAGGGCCATGGCCAGGGGCTCCAATGAACTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR GCA 90 bp | GGTAAGTCACTCTCCAGGAGTGTGCTTCTAGCTTCCCTACCCTCTTaGTGGACACGAGCCTGTCAGAATACAGCAGCAGCAACAGCAGAA | + |
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Preference number: 1 (lower is better) Translates to: GKSLSRSVLLASLPS*WTRACQNTAAATAE Trigger: TTCTGCTGTTGCTGCTGCTGTATTCTGACAGGCTCGTGTCCAGCAAGAGGGTAGGGAAGCTAGAAGCACACTCCTGGAGAGTGACTTACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CCA 90 bp | AACAGTAGGCCCTTCCACACTGACAGTTCTCATCCCAGCTGTACGTaGGTGAACGCAGTGCATGCAGTTTGCAGACAGACACCTCACCAA | + |
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Preference number: 1 (lower is better) Translates to: NSRPFHTDSSHPSCT*VNAVHAVCRQTPHQ Trigger: TTGGTGAGGTGTCTGTCTGCAAACTGCATGCACTGCGTTCACCCACGTACAGCTGGGATGAGAACTGTCAGTGTGGAAGGGCCTACTGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CAA 90 bp | GGAGACCACCCTGGGGAAGGCCGAGGCTCTGTCCTCTCCAGGCTCTaGTCTCGGGTACCACCCTCAACAGGCAGTCACACAGCAGAGCCC | + |
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Preference number: 2 (lower is better) Translates to: GDHPGEGRGSVLSRL*SRVPPSTGSHTAEP Trigger: GGGCTCTGCTGTGTGACTGCCTGTTGAGGGTGGTACCCGAGACAAGAGCCTGGAGAGGACAGAGCCTCGGCCTTCCCCAGGGTGGTCTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CAA 90 bp | CAGTTCTCATCCCAGCTGTACGTGGGTGAACGCAGTGCATGCAGTTaGCAGACAGACACCTCACCAAGCCTCTGCATTGGAAACCCGGCA | + |
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Preference number: 2 (lower is better) Translates to: QFSSQLYVGERSACS*QTDTSPSLCIGNPA Trigger: TGCCGGGTTTCCAATGCAGAGGCTTGGTGAGGTGTCTGTCTGCAAACTGCATGCACTGCGTTCACCCACGTACAGCTGGGATGAGAACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CAA 90 bp | CTCAGTTCATTGGAGCCCCTGGCCATGGCCCTGGCAGAGTTGCACTaGCTGCAGCAACCTCTTTTGGCCACCTTACTTAAGACGGTGTTC | + |
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Preference number: 2 (lower is better) Translates to: LSSLEPLAMALAELH*LQQPLLATLLKTVF Trigger: GAACACCGTCTTAAGTAAGGTGGCCAAAAGAGGTTGCTGCAGCAAGTGCAACTCTGCCAGGGCCATGGCCAGGGGCTCCAATGAACTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR-3UTR TCA 90 bp | GGCCGAGGCTCTGTCCTCTCCAGGCTCTTGTCTCGGGTACCACCCTCAACAGGCGAAATCAACCAGTGGTaGGACATGTTTTTCTTCTCG | + |
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Preference number: 2 (lower is better) Translates to: GRGSVLSRLLSRVPPSTGEINQW*DMFFFS Trigger: CGAGAAGAAAAACATGTCTCACCACTGGTTGATTTC...GCCTGTTGAGGGTGGTACCCGAGACAAGAGCCTGGAGAGGACAGAGCCTCGGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR-3UTR TCA 90 bp | ACGCTGAGGCCCTCACACCTGTCATGTGCCTGGACAGACATGTGGACAGTCTTTTTCACCCACTCCAGATaGGGACTCCCCTTACCATGG | + |
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Preference number: 2 (lower is better) Translates to: TLRPSHLSCAWTDMWTVFFTHSR*GLPLPW Trigger: CCATGGTAAGGGGAGTCCTCATCTGGAGTGGGTGAA...AAAGACTGTCCACATGTCTGTCCAGGCACATGACAGGTGTGAGGGCCTCAGCGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR-3UTR GCA 90 bp | AGTCCCCTGAGGGTTTTTCCTGGGTTCTCTTGTTGCTGCCAGATGAGAATCGCAGCTTTCCCTGGCAAATaGTGCCAGCCCCAGTCCCCA | + |
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Preference number: 2 (lower is better) Translates to: SPLRVFPGFSCCCQMRIAAFPGK*CQPQSP Trigger: TGGGGACTGGGGCTGGCAGCATTTGCCAGGGAAAGC...TGCGATTCTCATCTGGCAGCAACAAGAGAACCCAGGAAAAACCCTCAGGGGACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CAA 90 bp | AAGAGTCTCAGTTCATTGGAGCCCCTGGCCATGGCCCTGGCAGAGTaGCACTTGCTGCAGCAACCTCTTTTGGCCACCTTACTTAAGACG | + |
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Preference number: 2 (lower is better) Translates to: KSLSSLEPLAMALAE*HLLQQPLLATLLKT Trigger: CGTCTTAAGTAAGGTGGCCAAAAGAGGTTGCTGCAGCAAGTGCAACTCTGCCAGGGCCATGGCCAGGGGCTCCAATGAACTGAGACTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR-3UTR GCA 90 bp | AGGGACAAACGAGAAAGACAGATGAAGAACCCAACGCTGAGGCCCTCACACCTGACCTCACCAAGCCTCTaGATTGGAAACCCGGCAGTG | + |
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Preference number: 2 (lower is better) Translates to: RDKRERQMKNPTLRPSHLTSPSL*IGNPAV Trigger: CACTGCCGGGTTTCCAATGCAGAGGCTTGGTGAGGT...CAGGTGTGAGGGCCTCAGCGTTGGGTTCTTCATCTGTCTTTCTCGTTTGTCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR-3UTR CCA 90 bp | ACGTGGGTGAACGCAGTGCATGCAGTTTGCAGACAGACACCTCACCAAGCCTCTCAACAGCAGGCAGTGTaGAGAAGAGCACATGTCACC | + |
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Preference number: 2 (lower is better) Translates to: TWVNAVHAVCRQTPHQASQQQAV*RRAHVT Trigger: GGTGACATGTGCTCTTCTCCACACTGCCTGCTGTTG...AGAGGCTTGGTGAGGTGTCTGTCTGCAAACTGCATGCACTGCGTTCACCCACGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CAA 90 bp | GGACACATGTGCACTCTGATAAACAGAATGAAGAGTCTCAGTTCATaGGAGCCCCTGGCCATGGCCCTGGCAGAGTTGCACTTGCTGCAG | + |
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Preference number: 2 (lower is better) Translates to: GHMCTLINRMKSLSS*EPLAMALAELHLLQ Trigger: CTGCAGCAAGTGCAACTCTGCCAGGGCCATGGCCAGGGGCTCCAATGAACTGAGACTCTTCATTCTGTTTATCAGAGTGCACATGTGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR-3UTR TCA 90 bp | GGACAGACATGTGGACAGTCTTTAGCCAAAGGCAATGAAGGGCACAACAGTCACTTCTCGGGTGTCCCATaGTGGCACCCAGCTTTCCCT | + |
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Preference number: 2 (lower is better) Translates to: GQTCGQSLAKGNEGHNSHFSGVP*WHPAFP Trigger: AGGGAAAGCTGGGTGCCATCATGGGACACCCGAGAA...GTGACTGTTGTGCCCTTCATTGCCTTTGGCTAAAGACTGTCCACATGTCTGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR-3UTR CCA 90 bp | AGGGACAAACGAGAAAGACAGATGAAGAACCCAACGCTGAGGCCCTCACACCTGGCCTGGACAGACATGTaGACAGTCTTTAGCCAAAGG | + |
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Preference number: 2 (lower is better) Translates to: RDKRERQMKNPTLRPSHLAWTDM*TVFSQR Trigger: CCTTTGGCTAAAGACTGTCCACATGTCTGTCCAGGC...CAGGTGTGAGGGCCTCAGCGTTGGGTTCTTCATCTGTCTTTCTCGTTTGTCCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR-3UTR GCA 90 bp | GGACAGACATGTGGACAGTCTTTAGCCAAAGGCAATGAAGGGCACAACAGTCACGGTGAACGCAGTGCATaGAGTTTGCAGACAGACACC | + |
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Preference number: 2 (lower is better) Translates to: GQTCGQSLAKGNEGHNSHGERSA*SLQTDT Trigger: GGTGTCTGTCTGCAAACTGCATGCACTGCGTTCACC...GTGACTGTTGTGCCCTTCATTGCCTTTGGCTAAAGACTGTCCACATGTCTGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR-3UTR CCA 90 bp | GCATTAAAGGAAATCAGAATCAAGATACCCTCCCATCTGCAGACCATCTCCTCTGCACCCAGCTTTCCCTaGCAAATGCTGCCAGCCCCA | + |
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Preference number: 2 (lower is better) Translates to: ALKEIRIKIPSHLQTISSAPSFP*QMLPAP Trigger: TGGGGCTGGCAGCATTTGCCAGGGAAAGCTGGGTGC...AGAGGAGATGGTCTGCAGATGGGAGGGTATCTTGATTCTGATTTCCTTTAATGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR-3UTR GCA 90 bp | TCTCACCTTGCATTAAAGGAAATCAGAATCAAGATACCCTCCCATCTGCAGACCGTTAGCACTCGCTGCTaGCAGAAGGCCATCTGGGTT | + |
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Preference number: 2 (lower is better) Translates to: SHLALKEIRIKIPSHLQTVSTRC*QKAIWV Trigger: AACCCAGATGGCCTTCTGGCAGCAGCGAGTGCTAAC...GGTCTGCAGATGGGAGGGTATCTTGATTCTGATTTCCTTTAATGCAAGGTGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR-3UTR CCA 90 bp | TCTCCACTTAAGAACCTACTCTCACCTTGCATTAAAGGAAATCAGAATCAAGATTGGTGGAGACCACCCTaGGGAAGGCCGAGGCTCTGT | + |
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Preference number: 2 (lower is better) Translates to: SPLKNLLSPCIKGNQNQDWWRPP*GRPRLC Trigger: ACAGAGCCTCGGCCTTCCCCAGGGTGGTCTCCACCA...ATCTTGATTCTGATTTCCTTTAATGCAAGGTGAGAGTAGGTTCTTAAGTGGAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR-3UTR GCA 90 bp | GAATCTCCACTTAAGAACCTACTCTCACCTTGCATTAAAGGAAATCAGAATCAATTCCCTGGCAAATGCTaGCAGCCCCAGTCCCCACAC | + |
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Preference number: 2 (lower is better) Translates to: ESPLKNLLSPCIKGNQNQFPGKC*QPQSPH Trigger: GTGTGGGGACTGGGGCTGGCAGCATTTGCCAGGGAA...TTGATTCTGATTTCCTTTAATGCAAGGTGAGAGTAGGTTCTTAAGTGGAGATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR GCA 72 bp | AGCCCCTGGCCATGGCCCTGGCAGAGTTGCACTTGCTaGAGCAACCTCTTTTGGCCACCTTACTTAAGACGG | + |
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Preference number: 3 (lower is better) Translates to: SPWPWPWQSCTC*SNLFWPPYLRR Trigger: CCGTCTTAAGTAAGGTGGCCAAAAGAGGTTGCTGCAGCAAGTGCAACTCTGCCAGGGCCATGGCCAGGGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR GCA 72 bp | TGGAGCCCCTGGCCATGGCCCTGGCAGAGTTGCACTTaGTGCAGCAACCTCTTTTGGCCACCTTACTTAAGA | + |
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Preference number: 3 (lower is better) Translates to: WSPWPWPWQSCT*CSNLFWPPYLR Trigger: TCTTAAGTAAGGTGGCCAAAAGAGGTTGCTGCAGCAAGTGCAACTCTGCCAGGGCCATGGCCAGGGGCTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CCA 72 bp | AGAGTCTCAGTTCATTGGAGCCCCTGGCCATGGCCCTaGCAGAGTTGCACTTGCTGCAGCAACCTCTTTTGG | + |
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Preference number: 3 (lower is better) Translates to: RVSVHWSPWPWP*QSCTCCSNLFW Trigger: CCAAAAGAGGTTGCTGCAGCAAGTGCAACTCTGCCAGGGCCATGGCCAGGGGCTCCAATGAACTGAGACTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR-3UTR CAA 90 bp | AGACAGATGAAGAACCCAACGCTGAGGCCCTCACACCTGTCATGTGCCTGGACACGCAGTGCATGCAGTTaGCAGACAGACACCTCACCA | + |
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Preference number: 3 (lower is better) Translates to: RQMKNPTLRPSHLSCAWTRSACS*QTDTSP Trigger: TGGTGAGGTGTCTGTCTGCAAACTGCATGCACTGCG...TGTCCAGGCACATGACAGGTGTGAGGGCCTCAGCGTTGGGTTCTTCATCTGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR GCA 72 bp | TTCTCATCCCAGCTGTACGTGGGTGAACGCAGTGCATaGAGTTTGCAGACAGACACCTCACCAAGCCTCTGC | + |
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Preference number: 3 (lower is better) Translates to: FSSQLYVGERSA*SLQTDTSPSLC Trigger: GCAGAGGCTTGGTGAGGTGTCTGTCTGCAAACTGCATGCACTGCGTTCACCCACGTACAGCTGGGATGAGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR TCA 72 bp | TCCACACTGACAGTTCTCATCCCAGCTGTACGTGGGTaGACGCAGTGCATGCAGTTTGCAGACAGACACCTC | + |
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Preference number: 3 (lower is better) Translates to: STLTVLIPAVRG*TQCMQFADRHL Trigger: GAGGTGTCTGTCTGCAAACTGCATGCACTGCGTTCACCCACGTACAGCTGGGATGAGAACTGTCAGTGTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CCA 72 bp | TCCAGGAGTGTGCTTCTAGCTTCCCTACCCTCTTGCTaGACACGAGCCTGTCAGAATACAGCAGCAGCAACA | + |
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Preference number: 3 (lower is better) Translates to: SRSVLLASLPSC*TRACQNTAAAT Trigger: TGTTGCTGCTGCTGTATTCTGACAGGCTCGTGTCCAGCAAGAGGGTAGGGAAGCTAGAAGCACACTCCTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CCA 72 bp | CCCTTCCACACTGACAGTTCTCATCCCAGCTGTACGTaGGTGAACGCAGTGCATGCAGTTTGCAGACAGACA | + |
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Preference number: 3 (lower is better) Translates to: PFHTDSSHPSCT*VNAVHAVCRQT Trigger: TGTCTGTCTGCAAACTGCATGCACTGCGTTCACCCACGTACAGCTGGGATGAGAACTGTCAGTGTGGAAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CCA 72 bp | AACCCAACGCTGAGGCCCTCACACCTGTCATGTGCCTaGACAGACATGTGGACAGTCTTTAGCCAAAGGCAA | + |
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Preference number: 3 (lower is better) Translates to: NPTLRPSHLSCA*TDMWTVFSQRQ Trigger: TTGCCTTTGGCTAAAGACTGTCCACATGTCTGTCCAGGCACATGACAGGTGTGAGGGCCTCAGCGTTGGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR GCA 72 bp | TCACAGGGCCGCTGCTGCTTTCATGTTAGCACTCGCTaGTGCCAGAAGGCCATCTGGGTTTTCTGTTATTTC | + |
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Preference number: 3 (lower is better) Translates to: SQGRCCFHVSTR*CQKAIWVFCYF Trigger: GAAATAACAGAAAACCCAGATGGCCTTCTGGCAGCAGCGAGTGCTAACATGAAAGCAGCAGCGGCCCTGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR GCA 72 bp | TTAAGACGGTGTTCTGTGCAGCATGAAGCAGACTGGTaGCACTGTTCAGCCATCTTTCTCCGGTGGCCAGAA | + |
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Preference number: 3 (lower is better) Translates to: LRRCSVQHEADW*HCSAIFLRWPE Trigger: TTCTGGCCACCGGAGAAAGATGGCTGAACAGTGGCACCAGTCTGCTTCATGCTGCACAGAACACCGTCTTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CCA 72 bp | CCCTGGCAGAGTTGCACTTGCTGCAGCAACCTCTTTTaGCCACCTTACTTAAGACGGTGTTCTGTGCAGCAT | + |
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Preference number: 3 (lower is better) Translates to: PWQSCTCCSNLF*PPYLRRCSVQH Trigger: ATGCTGCACAGAACACCGTCTTAAGTAAGGTGGCCAAAAGAGGTTGCTGCAGCAAGTGCAACTCTGCCAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR-3UTR CAA 90 bp | GGACAGACATGTGGACAGTCTTTAGCCAAAGGCAATGAAGGGCACAACAGTCACTCCTGGGTTCTCTTGTaGCTGCCAGATGAGAATCGC | + |
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Preference number: 3 (lower is better) Translates to: GQTCGQSLAKGNEGHNSHSWVLL*LPDENR Trigger: GCGATTCTCATCTGGCAGCAACAAGAGAACCCAGGA...GTGACTGTTGTGCCCTTCATTGCCTTTGGCTAAAGACTGTCCACATGTCTGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR-3UTR CAA 90 bp | CATGGCCCTGGCAGAGTTGCACTTGCTGCAGCAACCTCTTTTGGCCACCTTACTTTTTCCTGGGTTCTCTaGTTGCTGCCAGATGAGAAT | + |
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Preference number: 3 (lower is better) Translates to: HGPGRVALAAATSFGHLTFSWVL*LLPDEN Trigger: ATTCTCATCTGGCAGCAACAAGAGAACCCAGGAAAA...AGTAAGGTGGCCAAAAGAGGTTGCTGCAGCAAGTGCAACTCTGCCAGGGCCATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR GCA 72 bp | CAGAGTCCCCTGAGGGTTTTTCCTGGGTTCTCTTGTTaGTGCCAGATGAGAATCGCACAGAATTCAGAGCCT | + |
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Preference number: 3 (lower is better) Translates to: QSPLRVFPGFSC*CQMRIAQNSEP Trigger: AGGCTCTGAATTCTGTGCGATTCTCATCTGGCAGCAACAAGAGAACCCAGGAAAAACCCTCAGGGGACTCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR GCA 72 bp | AAAGAGCCACCCTGGGCAGAGTCCAGTCTTCTAGGTTaGTACCGAGCAATTAGGGACAAACGAGAAAGACAG | + |
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Preference number: 3 (lower is better) Translates to: KEPPWAESSLLG*YRAIRDKRERQ Trigger: CTGTCTTTCTCGTTTGTCCCTAATTGCTCGGTAGCAACCTAGAAGACTGGACTCTGCCCAGGGTGGCTCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CCA 72 bp | CAGTTTGCAGACAGACACCTCACCAAGCCTCTGCATTaGAAACCCGGCAGTGTAACAAAACACTGTCCCATA | + |
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Preference number: 3 (lower is better) Translates to: QFADRHLTKPLH*KPGSVTKHCPI Trigger: TATGGGACAGTGTTTTGTTACACTGCCGGGTTTCCAATGCAGAGGCTTGGTGAGGTGTCTGTCTGCAAACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CAA 72 bp | CCTGGGGAAGGCCGAGGCTCTGTCCTCTCCAGGCTCTaGTCTCGGGTACCACCCTCAACAGGCAGTCACACA | + |
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Preference number: 4 (lower is better) Translates to: PGEGRGSVLSRL*SRVPPSTGSHT Trigger: TGTGTGACTGCCTGTTGAGGGTGGTACCCGAGACAAGAGCCTGGAGAGGACAGAGCCTCGGCCTTCCCCAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CAA 72 bp | AGTTCATTGGAGCCCCTGGCCATGGCCCTGGCAGAGTaGCACTTGCTGCAGCAACCTCTTTTGGCCACCTTA | + |
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Preference number: 4 (lower is better) Translates to: SSLEPLAMALAE*HLLQQPLLATL Trigger: TAAGGTGGCCAAAAGAGGTTGCTGCAGCAAGTGCAACTCTGCCAGGGCCATGGCCAGGGGCTCCAATGAACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CAA 72 bp | GCCCTGGCAGAGTTGCACTTGCTGCAGCAACCTCTTTaGGCCACCTTACTTAAGACGGTGTTCTGTGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: ALAELHLLQQPL*ATLLKTVFCAA Trigger: TGCTGCACAGAACACCGTCTTAAGTAAGGTGGCCAAAAGAGGTTGCTGCAGCAAGTGCAACTCTGCCAGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| CDS-3UTR TCA 90 bp | CTGCACCCTCCGGTTCAGAACCGTCCCTCTAGACTATGTTCAAAAGCATCAGTCTCCATGAGACGAGAATaGTCCGCACAGTCCACCAGA | + |
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Preference number: 4 (lower is better) Translates to: LHPPVQNRPSRLCSKASVSMRRE*SAQSTR Trigger: TCTGGTGGACTGTGCGGATCATTCTCGTCTCATGGA...GACTGATGCTTTTGAACATAGTCTAGAGGGACGGTTCTGAACCGGAGGGTGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| CDS-3UTR CCA 90 bp | AGGGACAAACGAGAAAGACAGATGAAGAACCCAACGCTGAGGCCCTCACACCTGAGTGTTGGTACGTGCTaGCCTAGTCTGTCATCTTTC | + |
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Preference number: 4 (lower is better) Translates to: RDKRERQMKNPTLRPSHLSVGTC*PSLSSF Trigger: GAAAGATGACAGACTAGGCCAGCACGTACCAACACT...CAGGTGTGAGGGCCTCAGCGTTGGGTTCTTCATCTGTCTTTCTCGTTTGTCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CAA 72 bp | ACAGAGTCCCCTGAGGGTTTTTCCTGGGTTCTCTTGTaGCTGCCAGATGAGAATCGCACAGAATTCAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: TESPEGFSWVLL*LPDENRTEFRA Trigger: GGCTCTGAATTCTGTGCGATTCTCATCTGGCAGCAACAAGAGAACCCAGGAAAAACCCTCAGGGGACTCTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| 3UTR CAA 72 bp | GCAGTTTGCAGACAGACACCTCACCAAGCCTCTGCATaGGAAACCCGGCAGTGTAACAAAACACTGTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: AVCRQTPHQASA*ETRQCNKTLSH Trigger: ATGGGACAGTGTTTTGTTACACTGCCGGGTTTCCAATGCAGAGGCTTGGTGAGGTGTCTGTCTGCAAACTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| CDS-3UTR TCA 90 bp | CTGCACCCTCCGGTTCAGAACCGTCCCTCTAGACTATGTTCAAAAGCATCAGTCAATTGTCAGTTCTTCTaGAGTGGGATGGAGTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: LHPPVQNRPSRLCSKASVNCQFF*SGMECW Trigger: CCAACACTCCATCCCACTTCAGAAGAACTGACAATT...GACTGATGCTTTTGAACATAGTCTAGAGGGACGGTTCTGAACCGGAGGGTGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| CDS-3UTR CCA 90 bp | AGTCCCCTGAGGGTTTTTCCTGGGTTCTCTTGTTGCTGCCAGATGAGAATCGCATCAGTTCTTCTGAAGTaGGATGGAGTGTTGGTACGT | + |
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Preference number: 4 (lower is better) Translates to: SPLRVFPGFSCCCQMRIASVLLK*DGVLVR Trigger: ACGTACCAACACTCCATCCCACTTCAGAAGAACTGA...TGCGATTCTCATCTGGCAGCAACAAGAGAACCCAGGAAAAACCCTCAGGGGACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020285.10 |
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| CDS-3UTR TCA 90 bp | TTTCATCAGTCATTAAAGCCTGACAACGGGCTGCTTCATCTTCACATTAGGTCTTCCATGAGACGAGAATaGTCCGCACAGTCCACCAGA | + |
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Preference number: 4 (lower is better) Translates to: FHQSLKPDNGLLHLHIRSSMRRE*SAQSTR Trigger: TCTGGTGGACTGTGCGGATCATTCTCGTCTCATGGA...AGACCTAATGTGAAGATGAAGCAGCCCGTTGTCAGGCTTTAATGACTGATGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218741.2 |
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| CDS-3UTR CCA 90 bp | TTGTTTCATCAGTCATTAAAGCCTGACAACGGGCTGCTTCATCTTCACATTAGGAGTGTTGGTACGTGCTaGCCTAGTCTGTCATCTTTC | + |
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Preference number: 4 (lower is better) Translates to: LFHQSLKPDNGLLHLHIRSVGTC*PSLSSF Trigger: GAAAGATGACAGACTAGGCCAGCACGTACCAACACT...CCTAATGTGAAGATGAAGCAGCCCGTTGTCAGGCTTTAATGACTGATGAAACAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218741.2 |
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| CDS-3UTR CCA 90 bp | TTGTTTCATCAGTCATTAAAGCCTGACAACGGGCTGCTTCATCTTCACATTAGGTCAGTTCTTCTGAAGTaGGATGGAGTGTTGGTACGT | + |
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Preference number: 4 (lower is better) Translates to: LFHQSLKPDNGLLHLHIRSVLLK*DGVLVR Trigger: ACGTACCAACACTCCATCCCACTTCAGAAGAACTGA...CCTAATGTGAAGATGAAGCAGCCCGTTGTCAGGCTTTAATGACTGATGAAACAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218741.2 |
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| CDS-3UTR TCA 90 bp | ATATTGTTTCATCAGTCATTAAAGCCTGACAACGGGCTGCTTCATCTTCACATTAATTGTCAGTTCTTCTaGAGTGGGATGGAGTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: ILFHQSLKPDNGLLHLHINCQFF*SGMECW Trigger: CCAACACTCCATCCCACTTCAGAAGAACTGACAATT...AATGTGAAGATGAAGCAGCCCGTTGTCAGGCTTTAATGACTGATGAAACAATAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218741.2 |
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