Pregenerated sensors for SAP18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021963Ensembl transcript IDs: ENSMUST00000111267.2, ENSMUST00000111268.8, ENSMUST00000111269.2, ENSMUST00000128764.9, ENSMUST00000143600.2
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGACCTGGGTCCTCTGCAAGAACAAGTGTTCTTAGCCGGGCGTGGTaGCGGATTTTTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGT | + |
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Preference number: 1 (lower is better) Translates to: RPGSSARTSVLSRAW*RIFEFEASLVYKVS Trigger: ACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAAAAATCCGCCACCACGCCCGGCTAAGAACACTTGTTCTTGCAGAGGACCCAGGTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 90 bp | AACAGACCTGGGTCCTCTGCAAGAACAAGTGTTCTTAGCCGGGCGTaGTGGCGGATTTTTGAGTTCGAGGCCAGCCTGGTCTACAAAGTG | + |
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Preference number: 1 (lower is better) Translates to: NRPGSSARTSVLSRA*WRIFEFEASLVYKV Trigger: CACTTTGTAGACCAGGCTGGCCTCGAACTCAAAAATCCGCCACCACGCCCGGCTAAGAACACTTGTTCTTGCAGAGGACCCAGGTCTGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR GCA 90 bp | GTGGGAGACCCCGTCTCACAAACAAGAGCTACAGGGAGCACTTGTTaGTTATGCCAAGGACTCAAGTTCAGTTCCCTGAAGCCACAGAGA | + |
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Preference number: 1 (lower is better) Translates to: VGDPVSQTRATGSTC*LCQGLKFSSLKPQR Trigger: TCTCTGTGGCTTCAGGGAACTGAACTTGAGTCCTTGGCATAAGCAACAAGTGCTCCCTGTAGCTCTTGTTTGTGAGACGGGGTCTCCCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 90 bp | AGGCAGGTCAGAAATCTGAATTCTAGGCCAGCATGGCCTACAAAGTaGGAGACCCCGTCTCACAAACAAGAGCTACAGGGAGCACTTGTT | + |
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Preference number: 1 (lower is better) Translates to: RQVRNLNSRPAWPTK*ETPSHKQELQGALV Trigger: AACAAGTGCTCCCTGTAGCTCTTGTTTGTGAGACGGGGTCTCCCACTTTGTAGGCCATGCTGGCCTAGAATTCAGATTTCTGACCTGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR TCA 90 bp | CAGTGCTGGGGACTTTCAGAACCATGGAAGGAGAGCTTGCTTTTCTaGACATGCAGAGGCACAACTAAGGTGACATCCATTGTGAGCTGG | + |
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Preference number: 1 (lower is better) Translates to: QCWGLSEPWKESLLF*TCRGTTKVTSIVSW Trigger: CCAGCTCACAATGGATGTCACCTTAGTTGTGCCTCTGCATGTTCAGAAAAGCAAGCTCTCCTTCCATGGTTCTGAAAGTCCCCAGCACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 90 bp | TATAGAAAGCAAAGGCAGGTCAGAAATCTGAATTCTAGGCCAGCATaGCCTACAAAGTGGGAGACCCCGTCTCACAAACAAGAGCTACAG | + |
|
Preference number: 1 (lower is better) Translates to: YRKQRQVRNLNSRPA*PTKWETPSHKQELQ Trigger: CTGTAGCTCTTGTTTGTGAGACGGGGTCTCCCACTTTGTAGGCCATGCTGGCCTAGAATTCAGATTTCTGACCTGCCTTTGCTTTCTATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 90 bp | AACCAACCTATGATGCAGAGTAGAGGGACAGGCTGTGTCCCACTTTaGAAACAGTTAATGCTCACTGAAAACTCCCTGTGCACAAAGTTC | + |
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Preference number: 1 (lower is better) Translates to: NQPMMQSRGTGCVPL*KQLMLTENSLCTKF Trigger: GAACTTTGTGCACAGGGAGTTTTCAGTGAGCATTAACTGTTTCCAAAGTGGGACACAGCCTGTCCCTCTACTCTGCATCATAGGTTGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR GCA 90 bp | TGTGTCCCACTTTGGAAACAGTTAATGCTCACTGAAAACTCCCTGTaGACAAAGTTCTCTATTCCACTGACTCCCACACTGGAATGTTAT | + |
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Preference number: 1 (lower is better) Translates to: CVPLWKQLMLTENSL*TKFSIPLTPTLECY Trigger: ATAACATTCCAGTGTGGGAGTCAGTGGAATAGAGAACTTTGTGCACAGGGAGTTTTCAGTGAGCATTAACTGTTTCCAAAGTGGGACACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR GCA 90 bp | ATTCATGTTCATCTCCCAAATGAGTTACCTGCTGCTGAGAGCCTCTaGCTTGGTCTCATGTTTACTGAACATAGTGTGACTTACTCAGAT | + |
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Preference number: 1 (lower is better) Translates to: IHVHLPNELPAAESL*LGLMFTEHSVTYSD Trigger: ATCTGAGTAAGTCACACTATGTTCAGTAAACATGAGACCAAGGCAGAGGCTCTCAGCAGCAGGTAACTCATTTGGGAGATGAACATGAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR TCA 90 bp | TTGAGAAGGAGACTAGTATACAAAGGGCTAACGTTTCATGGCTGCTaGGAATTCAGAGACTTCGTTTTACTGTTCAGTTTGCCAAAGATG | + |
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Preference number: 1 (lower is better) Translates to: LRRRLVYKGLTFHGC*EFRDFVLLFSLPKM Trigger: CATCTTTGGCAAACTGAACAGTAAAACGAAGTCTCTGAATTCTCAGCAGCCATGAAACGTTAGCCCTTTGTATACTAGTCTCCTTCTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR TCA 90 bp | ACAACTATCTATAACTCCAGTTGCAAGGGATCTGATGCCCTCTTCTaGCTTCCATGGGCACAAAACACACATAAAGTACAGTGGATAAAT | + |
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Preference number: 1 (lower is better) Translates to: TTIYNSSCKGSDALF*LPWAQNTHKVQWIN Trigger: ATTTATCCACTGTACTTTATGTGTGTTTTGTGCCCATGGAAGTCAGAAGAGGGCATCAGATCCCTTGCAACTGGAGTTATAGATAGTTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 90 bp | GGAAATATTGAGAAGGAGACTAGTATACAAAGGGCTAACGTTTCATaGCTGCTGAGAATTCAGAGACTTCGTTTTACTGTTCAGTTTGCC | + |
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Preference number: 1 (lower is better) Translates to: GNIEKETSIQRANVS*LLRIQRLRFTVQFA Trigger: GGCAAACTGAACAGTAAAACGAAGTCTCTGAATTCTCAGCAGCCATGAAACGTTAGCCCTTTGTATACTAGTCTCCTTCTCAATATTTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 90 bp | ATACTTTTAGAAATTTACTTGTCAACTCTAGGAAATCATAGCCATTaGCAAGTGTTTAAGCCAACAGACCAGATAGGCAGTCACTCTGCT | + |
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Preference number: 1 (lower is better) Translates to: ILLEIYLSTLGNHSH*QVFKPTDQIGSHSA Trigger: AGCAGAGTGACTGCCTATCTGGTCTGTTGGCTTAAACACTTGCCAATGGCTATGATTTCCTAGAGTTGACAAGTAAATTTCTAAAAGTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CAA 90 bp | AGTGGGAGACCCCGTCTCACAAACAAGAGCTACAGGGAGCACTTGTaGCTTATGCCAAGGACTCAAGTTCAGTTCCCTGAAGCCACAGAG | + |
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Preference number: 2 (lower is better) Translates to: SGRPRLTNKSYREHL*LMPRTQVQFPEATE Trigger: CTCTGTGGCTTCAGGGAACTGAACTTGAGTCCTTGGCATAAGCAACAAGTGCTCCCTGTAGCTCTTGTTTGTGAGACGGGGTCTCCCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR TCA 90 bp | CTAAGCATGCCAATCAGTGCTGGGGACTTTCAGAACCATGGAAGGAGAGCTTGCGGGTCTGACAGCTTCTaGCCTCTGAAAGGTCTGTAC | + |
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Preference number: 2 (lower is better) Translates to: LSMPISAGDFQNHGRRACGSDSF*PLKGLY Trigger: GTACAGACCTTTCAGAGGTCAGAAGCTGTCAGACCC...GCAAGCTCTCCTTCCATGGTTCTGAAAGTCCCCAGCACTGATTGGCATGCTTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR GCA 90 bp | TTTCCCTCTCACTCGCCCTCCCTTCAGGTGCATGTGCCAGCATGCACATTACACCATCTCTCCAGCCCTTaGCACCTACTTTTTCGATCA | + |
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Preference number: 2 (lower is better) Translates to: FPSHSPSLQVHVPACTLHHLSSP*HLLFRS Trigger: TGATCGAAAAAGTAGGTGGCAAGGGCTGGAGAGATG...GTGTAATGTGCATGCTGGCACATGCACCTGAAGGGAGGGCGAGTGAGAGGGAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CAA 90 bp | CAAAGTGGGAGACCCCGTCTCACAAACAAGAGCTACAGGGAGCACTaGTTGCTTATGCCAAGGACTCAAGTTCAGTTCCCTGAAGCCACA | + |
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Preference number: 2 (lower is better) Translates to: QSGRPRLTNKSYREH*LLMPRTQVQFPEAT Trigger: TGTGGCTTCAGGGAACTGAACTTGAGTCCTTGGCATAAGCAACAAGTGCTCCCTGTAGCTCTTGTTTGTGAGACGGGGTCTCCCACTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR GCA 90 bp | GCACTTGCTCTTGCAGAGAGCCCAGTTTTGATTCCGGGTACCTACGTGGTGGTTACAGGAATCAGTCACTaGAGCTCAGTTGTGCAGGTT | + |
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Preference number: 2 (lower is better) Translates to: ALALAESPVLIPGTYVVVTGISH*SSVVQV Trigger: AACCTGCACAACTGAGCTGCAGTGACTGATTCCTGT...AACCACCACGTAGGTACCCGGAATCAAAACTGGGCTCTCTGCAAGAGCAAGTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR TCA 90 bp | CTGGTCTCAGGCCAGCCAGCTGTACCCTGCACTTTCCATAAAATGATAAGCCCCAGTTCTCTATTCCACTaGCTCCCACACTGGAATGTT | + |
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Preference number: 2 (lower is better) Translates to: LVSGQPAVPCTFHKMISPSSLFH*LPHWNV Trigger: AACATTCCAGTGTGGGAGTCAGTGGAATAGAGAACT...GGGGCTTATCATTTTATGGAAAGTGCAGGGTACAGCTGGCTGGCCTGAGACCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR TCA 90 bp | GAGCAACTGACACCTGACATTGTTTGCTCTACACTTAAAAACTTACAACCCAGTTGCTCTCTGGGCCACTaGGATGGCTCAGTGAAGGAG | + |
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Preference number: 2 (lower is better) Translates to: EQLTPDIVCSTLKNLQPSCSLGH*DGSVKE Trigger: CTCCTTCACTGAGCCATCTCAGTGGCCCAGAGAGCA...ACTGGGTTGTAAGTTTTTAAGTGTAGAGCAAACAATGTCAGGTGTCAGTTGCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR GCA 90 bp | GAGCAACTGACACCTGACATTGTTTGCTCTACACTTAAAAACTTACAACCCAGTCCTCCCTTCACTTGGTaGCCAGAGGCAAAAAGGGGG | + |
|
Preference number: 2 (lower is better) Translates to: EQLTPDIVCSTLKNLQPSPPFTW*PEAKRG Trigger: CCCCCTTTTTGCCTCTGGGCACCAAGTGAAGGGAGG...ACTGGGTTGTAAGTTTTTAAGTGTAGAGCAAACAATGTCAGGTGTCAGTTGCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR CCA 90 bp | GTCCCACTTTGGAAACAGTTAATGCTCACTGAAAACTCCCTGTGCACAAAGTTCTCTGGGCCACTGAGATaGCTCAGTGAAGGAGTCTAC | + |
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Preference number: 2 (lower is better) Translates to: VPLWKQLMLTENSLCTKFSGPLR*LSEGVY Trigger: GTAGACTCCTTCACTGAGCCATCTCAGTGGCCCAGA...GAACTTTGTGCACAGGGAGTTTTCAGTGAGCATTAACTGTTTCCAAAGTGGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CAA 90 bp | ACCTTGTTCTGTAACCTGACATTTCTCCCTCCTTACCATCAGATCTaGCCGATAGTACATAAAAAGTTGGGTGAAAGGCCTGGAGTGCAG | + |
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Preference number: 2 (lower is better) Translates to: TLFCNLTFLPPYHQI*PIVHKKLGERPGVQ Trigger: CTGCACTCCAGGCCTTTCACCCAACTTTTTATGTACTATCGGCAAGATCTGATGGTAAGGAGGGAGAAATGTCAGGTTACAGAACAAGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CAA 90 bp | CCGATGGTCTCTAAAATCTGGGATGTCCTTTCCTTAGCTCTCACCTaGTTCTGTAACCTGACATTTCTCCCTCCTTACCATCAGATCTTG | + |
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Preference number: 2 (lower is better) Translates to: PMVSKIWDVLSLALT*FCNLTFLPPYHQIL Trigger: CAAGATCTGATGGTAAGGAGGGAGAAATGTCAGGTTACAGAACAAGGTGAGAGCTAAGGAAAGGACATCCCAGATTTTAGAGACCATCGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR GCA 90 bp | TTTGTTATTGCAAACAAACCACCGAAAAGTATTGGAGGCTGGTTCCAGATCCCACCCTTCAGGTGCATGTaGCAGCATGCACATTACACA | + |
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Preference number: 2 (lower is better) Translates to: FVIANKPPKSIGGWFQIPPFRCM*QHAHYT Trigger: TGTGTAATGTGCATGCTGGCACATGCACCTGAAGGG...TGGGATCTGGAACCAGCCTCCAATACTTTTCGGTGGTTTGTTTGCAATAACAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR TCA 90 bp | GTCCCACTTTGGAAACAGTTAATGCTCACTGAAAACTCCCTGTGCACAAAGTTCACAGCTTCTGACCTCTaGAAGGTCTGTACAGACATA | + |
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Preference number: 2 (lower is better) Translates to: VPLWKQLMLTENSLCTKFTASDL*KVCTDI Trigger: TATGTCTGTACAGACCTTTCAGAGGTCAGAAGCTGT...GAACTTTGTGCACAGGGAGTTTTCAGTGAGCATTAACTGTTTCCAAAGTGGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CAA 90 bp | ACACTTAAAAACTTACAACCCAGTTCTAGATTCAACCAAGCAGCTTaGCAGTTTCTAAGCATGCCAATCAGTGCTGGGGACTTTCAGAAC | + |
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Preference number: 2 (lower is better) Translates to: TLKNLQPSSRFNQAA*QFLSMPISAGDFQN Trigger: GTTCTGAAAGTCCCCAGCACTGATTGGCATGCTTAGAAACTGCAAAGCTGCTTGGTTGAATCTAGAACTGGGTTGTAAGTTTTTAAGTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR TCA 90 bp | ATTAAAACTGTTCTTTGGCCTGGACGTGGTCTTATCTTACACATACCTTTAATCTGTTGCGGATGGTTGTaGACTGCCATGTGGTTCTTG | + |
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Preference number: 2 (lower is better) Translates to: IKTVLWPGRGLILHIPLICCGWL*TAMWFL Trigger: CAAGAACCACATGGCAGTTCACAACCATCCGCAACA...GATTAAAGGTATGTGTAAGATAAGACCACGTCCAGGCCAAAGAACAGTTTTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CAA 90 bp | AAGCTAGTTGTAGTTTTGTTATTGCAAACAAACCACCGAAAAGTATaGGAGGCTGGTTCCAGATCCCAGTATAGCTCTTGGGTGTTATAC | + |
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Preference number: 2 (lower is better) Translates to: KLVVVLLLQTNHRKV*EAGSRSQYSSWVLY Trigger: GTATAACACCCAAGAGCTATACTGGGATCTGGAACCAGCCTCCAATACTTTTCGGTGGTTTGTTTGCAATAACAAAACTACAACTAGCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR CCA 90 bp | GTTCTAGGAAATATTGAGAAGGAGACTAGTATACAAAGGGCTAACGTTTCATGGAGCCATCTCACATTTTaGAGACAGACAAGCTCACAC | + |
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Preference number: 2 (lower is better) Translates to: VLGNIEKETSIQRANVSWSHLTF*RQTSSH Trigger: GTGTGAGCTTGTCTGTCTCCAAAATGTGAGATGGCT...CCATGAAACGTTAGCCCTTTGTATACTAGTCTCCTTCTCAATATTTCCTAGAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR CCA 90 bp | GAGCAACTGACACCTGACATTGTTTGCTCTACACTTAAAAACTTACAACCCAGTCCTCATAGCCTAGTTTaGATTCATTTCCTCCCTTCA | + |
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Preference number: 2 (lower is better) Translates to: EQLTPDIVCSTLKNLQPSPHSLV*IHFLPS Trigger: TGAAGGGAGGAAATGAATCCAAACTAGGCTATGAGG...ACTGGGTTGTAAGTTTTTAAGTGTAGAGCAAACAATGTCAGGTGTCAGTTGCTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR CCA 90 bp | GAGCAACTGACACCTGACATTGTTTGCTCTACACTTAAAAACTTACAACCCAGTTCCCAGTATAGCTCTTaGGTGTTATACTGTCATACT | + |
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Preference number: 2 (lower is better) Translates to: EQLTPDIVCSTLKNLQPSSQYSS*VLYCHT Trigger: AGTATGACAGTATAACACCCAAGAGCTATACTGGGA...ACTGGGTTGTAAGTTTTTAAGTGTAGAGCAAACAATGTCAGGTGTCAGTTGCTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR CCA 90 bp | GATTTTGTTCTGAGACTGGTTACCTGGTCAAGATTAAGCCTACTAGAATACTTTCTTTATACAACCCCATaGCTTTCTTATTTTGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: DFVLRLVTWSRLSLLEYFLYTTP*LSYFAS Trigger: AGAGGCAAAATAAGAAAGCCATGGGGTTGTATAAAG...AAAGTATTCTAGTAGGCTTAATCTTGACCAGGTAACCAGTCTCAGAACAAAATC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CAA 90 bp | TACCTGGTCAAGATTAAGCCTACTAGAATACTTTTAGAAATTTACTaGTCAACTCTAGGAAATCATAGCCATTGGCAAGTGTTTAAGCCA | + |
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Preference number: 2 (lower is better) Translates to: YLVKIKPTRILLEIY*STLGNHSHWQVFKP Trigger: TGGCTTAAACACTTGCCAATGGCTATGATTTCCTAGAGTTGACAAGTAAATTTCTAAAAGTATTCTAGTAGGCTTAATCTTGACCAGGTA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 72 bp | GGGTCCTCTGCAAGAACAAGTGTTCTTAGCCGGGCGTaGTGGCGGATTTTTGAGTTCGAGGCCAGCCTGGTC | + |
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Preference number: 3 (lower is better) Translates to: GSSARTSVLSRA*WRIFEFEASLV Trigger: GACCAGGCTGGCCTCGAACTCAAAAATCCGCCACCACGCCCGGCTAAGAACACTTGTTCTTGCAGAGGACCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 72 bp | TCCTCTGCAAGAACAAGTGTTCTTAGCCGGGCGTGGTaGCGGATTTTTGAGTTCGAGGCCAGCCTGGTCTAC | + |
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Preference number: 3 (lower is better) Translates to: SSARTSVLSRAW*RIFEFEASLVY Trigger: GTAGACCAGGCTGGCCTCGAACTCAAAAATCCGCCACCACGCCCGGCTAAGAACACTTGTTCTTGCAGAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 72 bp | TGCAGAGGCACAACTAAGGTGACATCCATTGTGAGCTaGTCTCAGGCCAGCCAGCTGTACCCTGCACTTTCC | + |
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Preference number: 3 (lower is better) Translates to: CRGTTKVTSIVS*SQASQLYPALS Trigger: GGAAAGTGCAGGGTACAGCTGGCTGGCCTGAGACCAGCTCACAATGGATGTCACCTTAGTTGTGCCTCTGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR TCA 72 bp | CGGATGGTTGTGAACTGCCATGTGGTTCTTGGGATTTaGACTCTGGACCTACGGAAGAGCAATCGGGTGCTC | + |
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Preference number: 3 (lower is better) Translates to: RMVVNCHVVLGI*TLDLRKSNRVL Trigger: GAGCACCCGATTGCTCTTCCGTAGGTCCAGAGTTCAAATCCCAAGAACCACATGGCAGTTCACAACCATCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR GCA 72 bp | CATTGTGAGCTGGTCTCAGGCCAGCCAGCTGTACCCTaGACTTTCCATAAAATGATAAGCCCCCACCCTCTA | + |
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Preference number: 3 (lower is better) Translates to: HCELVSGQPAVP*TFHKMISPHPL Trigger: TAGAGGGTGGGGGCTTATCATTTTATGGAAAGTGCAGGGTACAGCTGGCTGGCCTGAGACCAGCTCACAATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 72 bp | TCTCGGCTCAAGGTAAGCCTCCCTCATAGCCTAGTTTaGATTCATTTCCTCCCTTCACTTGGTGCCCAGAGG | + |
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Preference number: 3 (lower is better) Translates to: SRLKVSLPHSLV*IHFLPSLGAQR Trigger: CCTCTGGGCACCAAGTGAAGGGAGGAAATGAATCCAAACTAGGCTATGAGGGAGGCTTACCTTGAGCCGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR CAA 90 bp | CTGGTCTCAGGCCAGCCAGCTGTACCCTGCACTTTCCATAAAATGATAAGCCCCTACAGGGAGCACTTGTaGCTTATGCCAAGGACTCAA | + |
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Preference number: 3 (lower is better) Translates to: LVSGQPAVPCTFHKMISPYREHL*LMPRTQ Trigger: TTGAGTCCTTGGCATAAGCAACAAGTGCTCCCTGTA...GGGGCTTATCATTTTATGGAAAGTGCAGGGTACAGCTGGCTGGCCTGAGACCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR CAA 90 bp | CTGGTCTCAGGCCAGCCAGCTGTACCCTGCACTTTCCATAAAATGATAAGCCCCCGGAAGTTGTGGGCATaGGTCCCTCTTAGGTTTATT | + |
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Preference number: 3 (lower is better) Translates to: LVSGQPAVPCTFHKMISPRKLWA*VPLRFI Trigger: AATAAACCTAAGAGGGACCAATGCCCACAACTTCCG...GGGGCTTATCATTTTATGGAAAGTGCAGGGTACAGCTGGCTGGCCTGAGACCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR TCA 72 bp | GCAAAAAGGGGGTCAGATCCCTTAGGACTGGAGCTGTaGGCCATCATACAGATATTGGGAACAGACCTGGGT | + |
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Preference number: 3 (lower is better) Translates to: AKRGSDPLGLEL*AIIQILGTDLG Trigger: ACCCAGGTCTGTTCCCAATATCTGTATGATGGCTCACAGCTCCAGTCCTAAGGGATCTGACCCCCTTTTTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR CAA 90 bp | TTTGTTATTGCAAACAAACCACCGAAAAGTATTGGAGGCTGGTTCCAGATCCCACGTGGTGGCGGATTTTaGAGTTCGAGGCCAGCCTGG | + |
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Preference number: 3 (lower is better) Translates to: FVIANKPPKSIGGWFQIPRGGGF*SSRPAW Trigger: CCAGGCTGGCCTCGAACTCAAAAATCCGCCACCACG...TGGGATCTGGAACCAGCCTCCAATACTTTTCGGTGGTTTGTTTGCAATAACAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR GCA 72 bp | CCCGTCTCACAAACAAGAGCTACAGGGAGCACTTGTTaGTTATGCCAAGGACTCAAGTTCAGTTCCCTGAAG | + |
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Preference number: 3 (lower is better) Translates to: PVSQTRATGSTC*LCQGLKFSSLK Trigger: CTTCAGGGAACTGAACTTGAGTCCTTGGCATAAGCAACAAGTGCTCCCTGTAGCTCTTGTTTGTGAGACGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR GCA 72 bp | CCAAGCAGCTTTGCAGTTTCTAAGCATGCCAATCAGTaGTGGGGACTTTCAGAACCATGGAAGGAGAGCTTG | + |
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Preference number: 3 (lower is better) Translates to: PSSFAVSKHANQ*WGLSEPWKESL Trigger: CAAGCTCTCCTTCCATGGTTCTGAAAGTCCCCAGCACTGATTGGCATGCTTAGAAACTGCAAAGCTGCTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 72 bp | AGAAATCTGAATTCTAGGCCAGCATGGCCTACAAAGTaGGAGACCCCGTCTCACAAACAAGAGCTACAGGGA | + |
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Preference number: 3 (lower is better) Translates to: RNLNSRPAWPTK*ETPSHKQELQG Trigger: TCCCTGTAGCTCTTGTTTGTGAGACGGGGTCTCCCACTTTGTAGGCCATGCTGGCCTAGAATTCAGATTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 72 bp | CAAAGGCAGGTCAGAAATCTGAATTCTAGGCCAGCATaGCCTACAAAGTGGGAGACCCCGTCTCACAAACAA | + |
|
Preference number: 3 (lower is better) Translates to: QRQVRNLNSRPA*PTKWETPSHKQ Trigger: TTGTTTGTGAGACGGGGTCTCCCACTTTGTAGGCCATGCTGGCCTAGAATTCAGATTTCTGACCTGCCTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 72 bp | ATAGCTGAATGGTTCTGCTGTTGTAGAGAGAGGGTCTaGGGAGATGGCTCAGGGGTTAAAAGCACTTGCTCT | + |
|
Preference number: 3 (lower is better) Translates to: IAEWFCCCRERV*GDGSGVKSTCS Trigger: AGAGCAAGTGCTTTTAACCCCTGAGCCATCTCCCCAGACCCTCTCTCTACAACAGCAGAACCATTCAGCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR TCA 72 bp | CTGAAAACTCCCTGTGCACAAAGTTCTCTATTCCACTaGCTCCCACACTGGAATGTTATGCAGCTGGGCAAG | + |
|
Preference number: 3 (lower is better) Translates to: LKTPCAQSSLFH*LPHWNVMQLGK Trigger: CTTGCCCAGCTGCATAACATTCCAGTGTGGGAGTCAGTGGAATAGAGAACTTTGTGCACAGGGAGTTTTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 72 bp | AGCAGCTTTGCAGTTTCTAAGCATGCCAATCAGTGCTaGGGACTTTCAGAACCATGGAAGGAGAGCTTGCTT | + |
|
Preference number: 3 (lower is better) Translates to: SSFAVSKHANQC*GLSEPWKESLL Trigger: AAGCAAGCTCTCCTTCCATGGTTCTGAAAGTCCCCAGCACTGATTGGCATGCTTAGAAACTGCAAAGCTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 72 bp | TGCAGTTTAGCCACACCAGTCTTCAGCATCCTGCCTTaGATCTTAACACTGGCTGCTCTGCCTAGATATTTC | + |
|
Preference number: 3 (lower is better) Translates to: CSLATPVFSILP*ILTLAALPRYF Trigger: GAAATATCTAGGCAGAGCAGCCAGTGTTAAGATCCAAGGCAGGATGCTGAAGACTGGTGTGGCTAAACTGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR CAA 90 bp | CGTGTAGTTTCAGCAATCCTCTTCTTCTTGACACTTGTCATAAGCATCGCGACACCCGGTCTACAGATTTaGAATTCTAGTACGGCCAAG | + |
|
Preference number: 3 (lower is better) Translates to: RVVSAILFFLTLVISIATPGLQI*NSSTAK Trigger: CTTGGCCGTACTAGAATTCAAAATCTGTAGACCGGG...TGTCGCGATGCTTATGACAAGTGTCAAGAAGAAGAGGATTGCTGAAACTACACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR TCA 72 bp | AATCCCAGTATAGAAAGCAAAGGCAGGTCAGAAATCTaGATTCTAGGCCAGCATGGCCTACAAAGTGGGAGA | + |
|
Preference number: 3 (lower is better) Translates to: NPSIESKGRSEI*ILGQHGLQSGR Trigger: TCTCCCACTTTGTAGGCCATGCTGGCCTAGAATTCAGATTTCTGACCTGCCTTTGCTTTCTATACTGGGATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR TCA 72 bp | GGACTTTCAGAACCATGGAAGGAGAGCTTGCTTTTCTaGACATGCAGAGGCACAACTAAGGTGACATCCATT | + |
|
Preference number: 3 (lower is better) Translates to: GLSEPWKESLLF*TCRGTTKVTSI Trigger: AATGGATGTCACCTTAGTTGTGCCTCTGCATGTTCAGAAAAGCAAGCTCTCCTTCCATGGTTCTGAAAGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 72 bp | CTGGGTACAACCAGACCTATAAGCCCAACAACAGGATaGTCAGGAATTCCAGTACAGAAAAACCCTTTAAGT | + |
|
Preference number: 3 (lower is better) Translates to: LGTTRPISPTTG*SGIPVQKNPLS Trigger: ACTTAAAGGGTTTTTCTGTACTGGAATTCCTGACCATCCTGTTGTTGGGCTTATAGGTCTGGTTGTACCCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR TCA 72 bp | GTCTACTGCAAATGTTTAGCTTTCATAGTTCTCCAGTaGGGTCTCCAGCACTCAACAGGCTGTATTTCCATT | + |
|
Preference number: 3 (lower is better) Translates to: VYCKCLAFIVLQ*GLQHSTGCISI Trigger: AATGGAAATACAGCCTGTTGAGTGCTGGAGACCTCACTGGAGAACTATGAAAGCTAAACATTTGCAGTAGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR-3UTR CAA 90 bp | TTTGTTATTGCAAACAAACCACCGAAAAGTATTGGAGGCTGGTTCCAGATCCCATCAGTGGTGAAAAGCTaGAGTCAAGTGAATCAGGAA | + |
|
Preference number: 3 (lower is better) Translates to: FVIANKPPKSIGGWFQIPSVVKS*SQVNQE Trigger: TTCCTGATTCACTTGACTCAAGCTTTTCACCACTGA...TGGGATCTGGAACCAGCCTCCAATACTTTTCGGTGGTTTGTTTGCAATAACAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 72 bp | GAGAAGGAGACTAGTATACAAAGGGCTAACGTTTCATaGCTGCTGAGAATTCAGAGACTTCGTTTTACTGTT | + |
|
Preference number: 3 (lower is better) Translates to: EKETSIQRANVS*LLRIQRLRFTV Trigger: AACAGTAAAACGAAGTCTCTGAATTCTCAGCAGCCATGAAACGTTAGCCCTTTGTATACTAGTCTCCTTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR TCA 72 bp | AGACTAGTATACAAAGGGCTAACGTTTCATGGCTGCTaGGAATTCAGAGACTTCGTTTTACTGTTCAGTTTG | + |
|
Preference number: 3 (lower is better) Translates to: RLVYKGLTFHGC*EFRDFVLLFSL Trigger: CAAACTGAACAGTAAAACGAAGTCTCTGAATTCTCAGCAGCCATGAAACGTTAGCCCTTTGTATACTAGTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CCA 72 bp | GAAATTTACTTGTCAACTCTAGGAAATCATAGCCATTaGCAAGTGTTTAAGCCAACAGACCAGATAGGCAGT | + |
|
Preference number: 3 (lower is better) Translates to: EIYLSTLGNHSH*QVFKPTDQIGS Trigger: ACTGCCTATCTGGTCTGTTGGCTTAAACACTTGCCAATGGCTATGATTTCCTAGAGTTGACAAGTAAATTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR TCA 72 bp | CCCTTTAAGTCACTGTACATGAAGTTTACTTGGAAGTaGAAGCAGAATAGGGTTATACAACCAACCTATGAT | + |
|
Preference number: 3 (lower is better) Translates to: PFKSLYMKFTWK*KQNRVIQPTYD Trigger: ATCATAGGTTGGTTGTATAACCCTATTCTGCTTTCACTTCCAAGTAAACTTCATGTACAGTGACTTAAAGGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR TCA 72 bp | ATTCCAGTACAGAAAAACCCTTTAAGTCACTGTACATaGAGTTTACTTGGAAGTGAAAGCAGAATAGGGTTA | + |
|
Preference number: 3 (lower is better) Translates to: IPVQKNPLSHCT*SLLGSESRIGL Trigger: TAACCCTATTCTGCTTTCACTTCCAAGTAAACTTCATGTACAGTGACTTAAAGGGTTTTTCTGTACTGGAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| CDS-3UTR TCA 90 bp | CCATCTCACATTTTGGAGACAGACAAGCTCACACCATATCCAGAACTGAACCGTGGGAGACGCTCGCCCTaGCCTCCGACCCCTGCGGCG | + |
|
Preference number: 4 (lower is better) Translates to: PSHILETDKLTPYPELNRGRRSP*PPTPAA Trigger: CGCCGCAGGGGTCGGAGGTCAGGGCGAGCGTCTCCC...ACGGTTCAGTTCTGGATATGGTGTGAGCTTGTCTGTCTCCAAAATGTGAGATGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111269.2 ENSMUST00000128764.9 |
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| CDS-3UTR TCA 90 bp | GGTATAGCCATCTCACATTTTGGAGACAGACAAGCTCACACCATATCCAGAACTGGGAGACGCTCGCCCTaGCCTCCGACCCCTGCGGCG | + |
|
Preference number: 4 (lower is better) Translates to: GIAISHFGDRQAHTISRTGRRSP*PPTPAA Trigger: CGCCGCAGGGGTCGGAGGTCAGGGCGAGCGTCTCCC...AGTTCTGGATATGGTGTGAGCTTGTCTGTCTCCAAAATGTGAGATGGCTATACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111269.2 ENSMUST00000128764.9 |
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| 3UTR CAA 72 bp | GTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTTGTaGCGGATGGTTGTGAACTGCCATGTGGTTCTTGGG | + |
|
Preference number: 4 (lower is better) Translates to: VFRHSRRGSQIL*RMVVNCHVVLG Trigger: CCCAAGAACCACATGGCAGTTCACAACCATCCGCAACAAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CAA 72 bp | CCCCGTCTCACAAACAAGAGCTACAGGGAGCACTTGTaGCTTATGCCAAGGACTCAAGTTCAGTTCCCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: PRLTNKSYREHL*LMPRTQVQFPE Trigger: TTCAGGGAACTGAACTTGAGTCCTTGGCATAAGCAACAAGTGCTCCCTGTAGCTCTTGTTTGTGAGACGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CAA 72 bp | AGACCCCGTCTCACAAACAAGAGCTACAGGGAGCACTaGTTGCTTATGCCAAGGACTCAAGTTCAGTTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: RPRLTNKSYREH*LLMPRTQVQFP Trigger: AGGGAACTGAACTTGAGTCCTTGGCATAAGCAACAAGTGCTCCCTGTAGCTCTTGTTTGTGAGACGGGGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| CDS-3UTR TCA 90 bp | ATCTCACATTTTGGAGACAGACAAGCTCACACCATATCCAGAACTGAACCGTGTCCCGATTTGGAGGCGTaGTGGCTATGTCCAGATAAT | + |
|
Preference number: 4 (lower is better) Translates to: ISHFGDRQAHTISRTEPCPDLEA*WLCPDN Trigger: ATTATCTGGACATAGCCATCACGCCTCCAAATCGGG...ACACGGTTCAGTTCTGGATATGGTGTGAGCTTGTCTGTCTCCAAAATGTGAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CAA 72 bp | CCTTACCATCAGATCTTGCCGATAGTACATAAAAAGTaGGGTGAAAGGCCTGGAGTGCAGCTCAGTGGTAGT | + |
|
Preference number: 4 (lower is better) Translates to: PYHQILPIVHKK*GERPGVQLSGS Trigger: ACTACCACTGAGCTGCACTCCAGGCCTTTCACCCAACTTTTTATGTACTATCGGCAAGATCTGATGGTAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CAA 72 bp | GGGTTAAAAGCACTTGCTCTTGCAGAGAGCCCAGTTTaGATTCCGGGTACCTACGTGGTGGTTTACAACTAT | + |
|
Preference number: 4 (lower is better) Translates to: GLKALALAESPV*IPGTYVVVYNY Trigger: ATAGTTGTAAACCACCACGTAGGTACCCGGAATCAAAACTGGGCTCTCTGCAAGAGCAAGTGCTTTTAACCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CAA 72 bp | TTTGAGAGGCTTTGTCTGATCTTTGTACTTAAGTCCTaGGCACCTGTCAGTGGTGAAAAGCTTGAGTCAAGT | + |
|
Preference number: 4 (lower is better) Translates to: FERLCLIFVLKS*APVSGEKLESS Trigger: ACTTGACTCAAGCTTTTCACCACTGACAGGTGCCAAGGACTTAAGTACAAAGATCAGACAAAGCCTCTCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CAA 72 bp | TGTAACCTGACATTTCTCCCTCCTTACCATCAGATCTaGCCGATAGTACATAAAAAGTTGGGTGAAAGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: CNLTFLPPYHQI*PIVHKKLGERP Trigger: AGGCCTTTCACCCAACTTTTTATGTACTATCGGCAAGATCTGATGGTAAGGAGGGAGAAATGTCAGGTTACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CAA 72 bp | GTAGTTTTGTTATTGCAAACAAACCACCGAAAAGTATaGGAGGCTGGTTCCAGATCCCAGTATAGCTCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: VVLLLQTNHRKV*EAGSRSQYSSW Trigger: CCAAGAGCTATACTGGGATCTGGAACCAGCCTCCAATACTTTTCGGTGGTTTGTTTGCAATAACAAAACTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| 3UTR CAA 72 bp | TGCGGAAGTTGTGGGCATTGGTCCCTCTTAGGTTTATaGAATCCTTTATCTGGTATAGCCATCTCACATTTT | + |
|
Preference number: 4 (lower is better) Translates to: CGSCGHWSLLGL*NPLSGIAISHF Trigger: AAAATGTGAGATGGCTATACCAGATAAAGGATTCAATAAACCTAAGAGGGACCAATGCCCACAACTTCCGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128764.9 |
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| CDS-3UTR TCA 90 bp | ATAGCCATCTCACATTTTGGAGACAGACAAGCTCACACCATATCCAGAACTGAATTGAGAGGCTTTGTCTaGTCTTTGTACTTAAGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: IAISHFGDRQAHTISRTELRGFV*SLYLSP Trigger: AGGACTTAAGTACAAAGATCAGACAAAGCCTCTCAA...TTCAGTTCTGGATATGGTGTGAGCTTGTCTGTCTCCAAAATGTGAGATGGCTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111269.2 |
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| CDS TCA 72 bp | TCCTCCCTGACGAAGGCGGCGCCCGATTTGGAGGCGTaGTGGCTATGTCCAGATAATCCCCTATTTGGAACT | + |
|
Preference number: 6 (lower is better) Translates to: SSLTKAAPDLEA*WLCPDNPLFGT Trigger: AGTTCCAAATAGGGGATTATCTGGACATAGCCATCACGCCTCCAAATCGGGCGCCGCCTTCGTCAGGGAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000111267.2 ENSMUST00000111268.8 ENSMUST00000128764.9 ENSMUST00000143600.2 |
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| CDS CAA 72 bp | TTTGAGAGGCTTTGTCTGATCTTTGTACTTAAGTCCTaGGCACCAGGTGTAGATCTGCAGCTCGCTCGAAGG | + |
|
Preference number: 6 (lower is better) Translates to: FERLCLIFVLKS*APGVDLQLARR Trigger: CCTTCGAGCGAGCTGCAGATCTACACCTGGTGCCAAGGACTTAAGTACAAAGATCAGACAAAGCCTCTCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111269.2 |
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