RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SAP130 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024260

Ensembl transcript IDs: ENSMUST00000025109.8, ENSMUST00000178164.8, ENSMUST00000234772.2, ENSMUST00000234846.2, ENSMUST00000235017.2

Found 577 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTaGTGTGGCACCACTGTAGAAGGCCAACTTGGGCACTGGACAGTC +
Preference number: 1 (lower is better)
Translates to: TDRWILLREMWQFSG*CGTTVEGQLGHWTV
Trigger: GACTGTCCAGTGCCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR CCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATaGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCAAG +
Preference number: 1 (lower is better)
Translates to: AQLRPYRNPPDKYSL*AERLKPQPAICVTK
Trigger: CTTGGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR TCA 90 bp CCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTaGAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCC +
Preference number: 1 (lower is better)
Translates to: PTGIHQINTVYGLKG*NLSRPSVSPSVWSP
Trigger: GGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR GCA 90 bp CTGAAATGTCCTCTAGAACAGGATCCCAGAGCAGTTAGTGTTGTCTaGTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCAGGGCA +
Preference number: 1 (lower is better)
Translates to: LKCPLEQDPRAVSVV*SQPPQESSSDTGRA
Trigger: TGCCCTGCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGGATCCTGTTCTAGAGGACATTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR TCA 90 bp ACCTCTTCTAGTCCTTTATTGATGTTTGGAGATGCGTGGTACATATaGCTAACAGCATCACACGGTAGGGAAGGACAGATAACTGAAATG +
Preference number: 1 (lower is better)
Translates to: TSSSPLLMFGDAWYI*LTASHGREGQITEM
Trigger: CATTTCAGTTATCTGTCCTTCCCTACCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGACTAGAAGAGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR-3UTR CCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCGATGTGGCAGTTCTCTaGGTGCTGTGGCACCACTGT +
Preference number: 2 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGDVAVL*VLWHHC
Trigger: ACAGTGGTGCCACAGCACCCAGAGAACTGCCACATC...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR-3UTR CCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACGATGTGGCAGTTCTCTaGGTGCTGTGGCACCACTGT +
Preference number: 2 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDDVAVL*VLWHHC
Trigger: ACAGTGGTGCCACAGCACCCAGAGAACTGCCACATC...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR-3UTR TCA 90 bp CCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCACGTCAGTCCAGTTCTaGTCCTTCTGTGCCACCAGA +
Preference number: 2 (lower is better)
Translates to: PPDKYSLWAERLKPQPAITSVQF*SFCATR
Trigger: TCTGGTGGCACAGAAGGATCAGAACTGGACTGACGT...GATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR-3UTR TCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCACGTCAGTCCAGTTCTaGTCCTTCTGTGCCACCAGA +
Preference number: 2 (lower is better)
Translates to: KYSLWAERLKPQPAICVTTSVQF*SFCATR
Trigger: TCTGGTGGCACAGAAGGATCAGAACTGGACTGACGT...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR-3UTR TCA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGGCTTCCTCAAGTGAATaGAGAAAAGTGTCCTGTAAT +
Preference number: 2 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLASSSE*RKVSCN
Trigger: ATTACAGGACACTTTTCTTCATTCACTTGAGGAAGC...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR-3UTR CCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACGATAGATTGTCCAAGTaGATACTTTCAGTCCAGGCT +
Preference number: 2 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDDRLSK*ILSVQA
Trigger: AGCCTGGACTGAAAGTATCCACTTGGACAATCTATC...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR-3UTR CCA 90 bp GAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGACAAGAACTGATCGCTaGATCCTTTTGCGTGAGATG +
Preference number: 2 (lower is better)
Translates to: EQLVLSALNLHKNPALTQTRTDR*ILLREM
Trigger: CATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGT...CTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR CAA 90 bp GAAATGGTTCTTTTGAAAATGACAAGAACTGATCGCTGGATCCTTTaGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTA +
Preference number: 2 (lower is better)
Translates to: EMVLLKMTRTDRWIL*REMWQFSGCCGTTV
Trigger: TACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAAAAGAACCATTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR-3UTR TCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCGCTTCCTCAAGTGAATaGAGAAAAGTGTCCTGTAAT +
Preference number: 2 (lower is better)
Translates to: KYSLWAERLKPQPAICVTASSSE*RKVSCN
Trigger: ATTACAGGACACTTTTCTTCATTCACTTGAGGAAGC...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR-3UTR CCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGGGCCAACTTGGGCACTaGACAGTCAAACAGGAGAAG +
Preference number: 2 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRGQLGH*TVKQEK
Trigger: CTTCTCCTGTTTGACTGTCCAGTGCCCAAGTTGGCC...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR-3UTR GCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCTGTCCTGTAATTCAATaGTCCATTGTCAAAGTAGCA +
Preference number: 2 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGCPVIQ*SIVKVA
Trigger: TGCTACTTTGACAATGGAGCATTGAATTACAGGACA...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR-3UTR GCA 90 bp TTGAAAATGACAAGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTGTCCTGTAATTCAATaGTCCATTGTCAAAGTAGCA +
Preference number: 2 (lower is better)
Translates to: LKMTRTDRWILLREMWQFCPVIQ*SIVKVA
Trigger: TGCTACTTTGACAATGGAGCATTGAATTACAGGACA...GAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR TCA 72 bp AGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTaGAAACTGAGGTGCAATAGGTGTGCGTCTGGAGGA +
Preference number: 3 (lower is better)
Translates to: SRPSVSPSVWSP*KLRCNRCASGG
Trigger: TCCTCCAGACGCACACCTATTGCACCTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR GCA 72 bp TGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTaGTGTGGCACCACTGTAGAAGGCCAACTTGGGCAC +
Preference number: 3 (lower is better)
Translates to: WILLREMWQFSG*CGTTVEGQLGH
Trigger: GTGCCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR TCA 72 bp CATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTaGGGTGCAATAGGTGTGCGTCTGGAGGAAGGAGGA +
Preference number: 3 (lower is better)
Translates to: HLCHQVSGVPEN*GAIGVRLEEGG
Trigger: TCCTCCTTCCTCCAGACGCACACCTATTGCACCTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR TCA 72 bp TGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTaGCACAGGCAGGGCAGACAGTGTAACAGTGTCACT +
Preference number: 3 (lower is better)
Translates to: CCLLSTSTRIQL*HRQGRQCNSVT
Trigger: AGTGACACTGTTACACTGTCTGCCCTGCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR TCA 72 bp ATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTaGAACCTCAGCCGGCCATCTGTGTCACCAAGTGTC +
Preference number: 3 (lower is better)
Translates to: IHQINTVYGLKG*NLSRPSVSPSV
Trigger: GACACTTGGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR-3UTR CAA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACATCTAGAGAGGATAGATaGTCCAAGTGGATACTTTCA +
Preference number: 3 (lower is better)
Translates to: PEQLVLSALNLHKNPALTSREDR*SKWILS
Trigger: TGAAAGTATCCACTTGGACAATCTATCCTCTCTAGA...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR TCA 72 bp AGTCCTTTATTGATGTTTGGAGATGCGTGGTACATATaGCTAACAGCATCACACGGTAGGGAAGGACAGATA +
Preference number: 3 (lower is better)
Translates to: SPLLMFGDAWYI*LTASHGREGQI
Trigger: TATCTGTCCTTCCCTACCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGTGCTGGCTGGATCCCTaGTGTCCCAATGGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGCWLDP*CPNGGW
Trigger: CCAGCCCCCATTGGGACATCAGGGATCCAGCCAGCA...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGACCACAACTGGCTCCTaGTTCTCTTCCCGGGGCGGC +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGTTTGS*FSSRGG
Trigger: GCCGCCCCGGGAAGAGAAGCAGGAGCCAGTTGTGGT...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGTGCTGGTGTCAGGTGTaGTGGCGGGGCTGTCACTGC +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGCWCQV*WRGCHC
Trigger: GCAGTGACAGCCCCGCCAGCACACCTGACACCAGCA...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGATGGTCGGTGGAGGCTaGTGGGCAGTCGGAGGGACA +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGMVGGG*WAVGGT
Trigger: TGTCCCTCCGACTGCCCAGCAGCCTCCACCGACCAT...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGAGGGCAATGGCTGGTTaGGATGGAGGACTGGCTGCC +
Preference number: 4 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLRAMAG*DGGLAA
Trigger: GGCAGCCAGTCCTCCATCCCAACCAGCCATTGCCCT...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGGAGACACCGTGTTGGTaGCCAGAGGAGGGACTGTGG +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGETPCW*PEEGLW
Trigger: CCACAGTCCCTCCTCTGGCCACCAACACGGTGTCTC...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCTGCGACAGGGGTGGCTaGGGCGACAGCATGGTGTGC +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPCDRGG*GDSMVC
Trigger: GCACACCATGCTGTCGCCTCAGCCACCCCTGTCGCA...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACTGCGACAGGGGTGGCTaGGGCGACAGCATGGTGTGC +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDCDRGG*GDSMVC
Trigger: GCACACCATGCTGTCGCCTCAGCCACCCCTGTCGCA...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGGCCCCTGTTGTCCACTaGTTGTTGCCACGGGAATGG +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGAPVVH*LLPREW
Trigger: CCATTCCCGTGGCAACAATCAGTGGACAACAGGGGC...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCTGGGAAGCTCCAATGTaGAGTGGGGGCCCGGGAGCG +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTWEAPM*SGGPGA
Trigger: CGCTCCCGGGCCCCCACTTCACATTGGAGCTTCCCA...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGGGAAGCTCCAATGTaGAGTGGGGGCCCGGGAGCG +
Preference number: 4 (lower is better)
Translates to: PPDKYSLWAERLKPQPAIWEAPM*SGGPGA
Trigger: CGCTCCCGGGCCCCCACTTCACATTGGAGCTTCCCA...GATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGCTGCGCTCTGGTGGCTaGGACTGTTGCTACTACAGC +
Preference number: 4 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLLRSGG*DCCYYS
Trigger: GCTGTAGTAGCAACAGTCTCAGCCACCAGAGCGCAG...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGTGCTGGCTGGATCCCTaGTGTCCCAATGGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTECWLDP*CPNGGW
Trigger: CCAGCCCCCATTGGGACATCAGGGATCCAGCCAGCA...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGGTTGATTGGGGCTGCTaGATGGATTCCTGGGGTGCC +
Preference number: 4 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLVDWGC*MDSWGA
Trigger: GGCACCCCAGGAATCCATTCAGCAGCCCCAATCAAC...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGTGCTGGTGTCAGGTGTaGTGGCGGGGCTGTCACTGC +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTECWCQV*WRGCHC
Trigger: GCAGTGACAGCCCCGCCAGCACACCTGACACCAGCA...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGATCTGTGAAGGTGGCTaGCTAAGCCCAGGGGAAGGG +
Preference number: 4 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLICEGG*LSPGEG
Trigger: CCCTTCCCCTGGGCTTAGCCAGCCACCTTCACAGAT...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGGGGCCTTACCACAACTaGCTCCTGCTTCTCTTCCCG +
Preference number: 4 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLGPYHN*LLLLFP
Trigger: CGGGAAGAGAAGCAGGAGCCAGTTGTGGTAAGGCCC...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGGGGCCTTACCACAACTaGCTCCTGCTTCTCTTCCCG +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGGPYHN*LLLLFP
Trigger: CGGGAAGAGAAGCAGGAGCCAGTTGTGGTAAGGCCC...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGGAGGTGCTGTACTGCTaGCTGCGCCGTAGCAGCATT +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGEVLYC*LRRSSI
Trigger: AATGCTGCTACGGCGCAGCCAGCAGTACAGCACCTC...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGCAGGAGGGATTGTACTaGAGGTGGTCACAGGTGGCC +
Preference number: 4 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLQEGLY*RWSQVA
Trigger: GGCCACCTGTGACCACCTCCAGTACAATCCCTCCTG...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGAATGGTGGTGATGGGTaGAGTGACAGGCACGGCTCC +
Preference number: 4 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLNGGDG*SDRHGS
Trigger: GGAGCCGTGCCTGTCACTCCACCCATCACCACCATT...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGTCGAGGCTTTTTCCTTaGGGAGGCACCAGGTGGGAG +
Preference number: 4 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLSRLFP*GGTRWE
Trigger: CTCCCACCTGGTGCCTCCCCAAGGAAAAAGCCTCGA...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGATCTGCCAACACCACTaGGGTTTTCCCCTCAGGCTG +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGICQHH*GFPLRL
Trigger: CAGCCTGAGGGGAAAACCTCAGTGGTGTTGGCAGAT...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025109.8
CDS-3UTR GCA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTACCACAACTGGCTCCTaGTTCTCTTCCCGGGGCGGC +
Preference number: 4 (lower is better)
Translates to: RTDRWILLREMWQFSGCCTTTGS*FSSRGG
Trigger: GCCGCCCCGGGAAGAGAAGCAGGAGCCAGTTGTGGT...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGCTGGTGTCAGGTGTaGTGGCGGGGCTGTCACTGC +
Preference number: 4 (lower is better)
Translates to: PPDKYSLWAERLKPQPAICWCQV*WRGCHC
Trigger: GCAGTGACAGCCCCGCCAGCACACCTGACACCAGCA...GATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGGTGATGACAGGAGACTaGGCTCTGGTGGCTGAGACT +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGVMTGD*ALVAET
Trigger: AGTCTCAGCCACCAGAGCGCAGTCTCCTGTCATCAC...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGGTGGGAGCTTGTGTGTaGGACACAGATCCAGCTGTG +
Preference number: 4 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLVGACV*DTDPAV
Trigger: CACAGCTGGATCTGTGTCGCACACACAAGCTCCCAC...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACGGGGGTGTAGGTGTGTaGAGCCAGCGGGTAGGCAGA +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDGGVGV*SQRVGR
Trigger: TCTGCCTACCCGCTGGCTGCACACACCTACACCCCC...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCATGGTCGGTGGAGGCTaGTGGGCAGTCGGAGGGACA +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGMVGGG*WAVGGT
Trigger: TGTCCCTCCGACTGCCCAGCAGCCTCCACCGACCAT...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGTGGCCGAGACTGGATTaGCTGGTGAATGAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGWPRLD*LVNEVL
Trigger: CAGCACCTCATTCACCAGCCAATCCAGTCTCGGCCA...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGGGAGGTGGTCACAGGTaGCCGAGACTGGATTGGCTG +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTEGGGHR*PRLDWL
Trigger: CAGCCAATCCAGTCTCGGCCACCTGTGACCACCTCC...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGCAGGAGACTGCGCTCTaGTGGCTGAGACTGTTGCTA +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGQETAL*WLRLLL
Trigger: TAGCAACAGTCTCAGCCACCAGAGCGCAGTCTCCTG...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGCATGGCCACTGGATTTaGAGAGGCCCGATGGCCGGA +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTEHGHWI*RGPMAG
Trigger: TCCGGCCATCGGGCCTCTCCAAATCCAGTGGCCATG...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGGAGACACCGTGTTGGTaGCCAGAGGAGGGACTGTGG +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTEETPCW*PEEGLW
Trigger: CCACAGTCCCTCCTCTGGCCACCAACACGGTGTCTC...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGGATATGTCGGGCATGTaGGGCATCCACTGTCATCAG +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGDMSGM*GIHCHQ
Trigger: CTGATGACAGTGGATGCCTCACATGCCCGACATATC...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAATGCTGGCTGGATCCCTaGTGTCCCAATGGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAECWLDP*CPNGGW
Trigger: CCAGCCCCCATTGGGACATCAGGGATCCAGCCAGCA...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGTTGGTGCTAGCACTCTaGCTGTGTGTCTGGACCACT +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGLVLAL*LCVWTT
Trigger: AGTGGTCCAGACACACAGTCAGAGTGCTAGCACCAA...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTTGGAGACAGGCCTGGTaGTGTCCACTGGCTCCGCTT +
Preference number: 4 (lower is better)
Translates to: RTDRWILLREMWQFSGCCWRQAW*CPLAPL
Trigger: AAGCGGAGCCAGTGGACATCACCAGGCCTGTCTCCA...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGCTTTCTTCTCCTCTTTaGCCCGGACGTCACTGTACC +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGLSSPL*PGRHCT
Trigger: GGTACAGTGACGTCCGGGTCAAAGAGGAGAAGAAAG...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025109.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACCCGTCCCGTTCTTGTTaGGCAGCTTCAGCACCCGGT +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDPSRSC*AASAPG
Trigger: ACCGGGTGCTGAAGCTGCTCAACAAGAACGGGACGG...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCCCGTCCCGTTCTTGTTaGGCAGCTTCAGCACCCGGT +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPPSRSC*AASAPG
Trigger: ACCGGGTGCTGAAGCTGCTCAACAAGAACGGGACGG...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
56% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGCTTCCGCTTCAACTTTaGCACCTTCTTGACCGTCCC +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGLPLQL*HLLDRP
Trigger: GGGACGGTCAAGAAGGTGTCAAAGTTGAAGCGGAAG...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAACCACAACTGGCTCCTaGTTCTCTTCCCGGGGCGGC +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAETTTGS*FSSRGG
Trigger: GCCGCCCCGGGAAGAGAAGCAGGAGCCAGTTGTGGT...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGGGTTGCCAGAATAGGTaGTACTGTAGCTGCAGCCAC +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGGCQNR*YCSCSH
Trigger: GTGGCTGCAGCTACAGTAGCACCTATTCTGGCAACC...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACAGGGGGTGTAGGTGTGTaGAGCCAGCGGGTAGGCAGA +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTGGVGV*SQRVGR
Trigger: TCTGCCTACCCGCTGGCTGCACACACCTACACCCCC...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCTCACTGCGACAGGGGTaGCTGAGGCGACAGCATGGT +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGSLRQG*LRRQHG
Trigger: ACCATGCTGTCGCCTCAGCCACCCCTGTCGCAGTGA...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACTCACTGCGACAGGGGTaGCTGAGGCGACAGCATGGT +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDSLRQG*LRRQHG
Trigger: ACCATGCTGTCGCCTCAGCCACCCCTGTCGCAGTGA...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCGGAGGTGGTCACAGGTaGCCGAGACTGGATTGGCTG +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTGGGHR*PRLDWL
Trigger: CAGCCAATCCAGTCTCGGCCACCTGTGACCACCTCC...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACGTGTCTGGACCACTGTaGTTGCCGCTGGAGCAGCAC +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDVSGPL*LPLEQH
Trigger: GTGCTGCTCCAGCGGCAACCACAGTGGTCCAGACAC...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCCGGGGAGAAGAGCCCTaGGCTGGTGTGTTGGTGCTA +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPRGEEP*AGVLVL
Trigger: TAGCACCAACACACCAGCCCAGGGCTCTTCTCCCCG...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCAGGGCAATGGCTGGTTaGGATGGAGGACTGGCTGCC +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTRAMAG*DGGLAA
Trigger: GGCAGCCAGTCCTCCATCCCAACCAGCCATTGCCCT...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCGCACGGCTCCGGGAATaGTGGAAAGGGCAATGGCTG +
Preference number: 4 (lower is better)
Translates to: PPDKYSLWAERLKPQPAIARLRE*WKGQWL
Trigger: CAGCCATTGCCCTTTCCACCATTCCCGGAGCCGTGC...GATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCGCACGGCTCCGGGAATaGTGGAAAGGGCAATGGCTG +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPARLRE*WKGQWL
Trigger: CAGCCATTGCCCTTTCCACCATTCCCGGAGCCGTGC...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACTGCCACGGGAATGGCTaGAGCTTGAGGGATGCTGCT +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDCHGNG*SLRDAA
Trigger: AGCAGCATCCCTCAAGCTTCAGCCATTCCCGTGGCA...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCTGCCACGGGAATGGCTaGAGCTTGAGGGATGCTGCT +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTCHGNG*SLRDAA
Trigger: AGCAGCATCCCTCAAGCTTCAGCCATTCCCGTGGCA...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCGGATTCCCTGTGTACTaGTGGGTGCTGGCTGGATCC +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGGFPVY*WVLAGS
Trigger: GGATCCAGCCAGCACCCATCAGTACACAGGGAATCC...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGCTTCTTCCTTCACTTTaGTCTCAGGAACAGGAGGCC +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGLLPSL*SQEQEA
Trigger: GGCCTCCTGTTCCTGAGATCAAAGTGAAGGAAGAAG...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAATGGAGACAGGCCTGGTaGTGTCCACTGGCTCCGCTT +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAEWRQAW*CPLAPL
Trigger: AAGCGGAGCCAGTGGACATCACCAGGCCTGTCTCCA...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGTGGGCAGCACAGAGGTaGACTTTCCAGCCCTGGGCA +
Preference number: 4 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERWAAQR*TFQPWA
Trigger: TGCCCAGGGCTGGAAAGTTCACCTCTGTGCTGCCCA...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACATGGGCAGCACAGAGGTaGACTTTCCAGCCCTGGGCA +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTWAAQR*TFQPWA
Trigger: TGCCCAGGGCTGGAAAGTTCACCTCTGTGCTGCCCA...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACGGCGACAGCATGGTGTaGAGGCAGCATCTGTACCTG +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDGDSMV*RQHLYL
Trigger: CAGGTACAGATGCTGCCTGCACACCATGCTGTCGCC...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCGGCGACAGCATGGTGTaGAGGCAGCATCTGTACCTG +
Preference number: 4 (lower is better)
Translates to: PPDKYSLWAERLKPQPAIGDSMV*RQHLYL
Trigger: CAGGTACAGATGCTGCCTGCACACCATGCTGTCGCC...GATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGTGCAGGTTACTGGGATaGCCCTGTTGTCCACTGATT +
Preference number: 4 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLCRLLG*PCCPLI
Trigger: AATCAGTGGACAACAGGGGCATCCCAGTAACCTGCA...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGCTGTACTGCTGGCTaGGCCGTAGCAGCATTTGGC +
Preference number: 4 (lower is better)
Translates to: PPDKYSLWAERLKPQPAICCTAG*AVAAFG
Trigger: GCCAAATGCTGCTACGGCGCAGCCAGCAGTACAGCA...GATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCTGCTGTACTGCTGGCTaGGCCGTAGCAGCATTTGGC +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPCCTAG*AVAAFG
Trigger: GCCAAATGCTGCTACGGCGCAGCCAGCAGTACAGCA...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGGCTGCAGATGGTGGATaGTGGATAGATAAAGTGGGC +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGAADGG*WIDKVG
Trigger: GCCCACTTTATCTATCCAGCATCCACCATCTGCAGC...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGGTGGGAGCTTGTGTGTaGGACACAGATCCAGCTGTG +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTEVGACV*DTDPAV
Trigger: CACAGCTGGATCTGTGTCGCACACACAAGCTCCCAC...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGCTGCTGATTAGCCATTaGTGCTGGCTGAAGCCCCTG +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTELLISH*CWLKPL
Trigger: CAGGGGCTTCAGCCAGCAGCAATGGCTAATCAGCAG...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCTGGCTGCCGCAATCATaGTGGGAATGGTCGGTGGAG +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTWLPQS*WEWSVE
Trigger: CTCCACCGACCATTCCCAGCATGATTGCGGCAGCCA...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACATCTGTGAAGGTGGCTaGCTAAGCCCAGGGGAAGGG +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDICEGG*LSPGEG
Trigger: CCCTTCCCCTGGGCTTAGCCAGCCACCTTCACAGAT...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AGAGAGGATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCATCTGTGAAGGTGGCTaGCTAAGCCCAGGGGAAGGG +
Preference number: 4 (lower is better)
Translates to: REDRLSKWILSVQAQLRPICEGG*LSPGEG
Trigger: CCCTTCCCCTGGGCTTAGCCAGCCACCTTCACAGAT...GGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTATCCTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACGGCCCACGTGCTCCCTaGTACCAACATCAGCATCTC +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDGPRAP*YQHQHL
Trigger: GAGATGCTGATGTTGGTACCAGGGAGCACGTGGGCC...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCGGGCCTTACCACAACTaGCTCCTGCTTCTCTTCCCG +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPGPYHN*LLLLFP
Trigger: CGGGAAGAGAAGCAGGAGCCAGTTGTGGTAAGGCCC...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCGCTGAGGCGACAGCATaGTGTGCAGGCAGCATCTGT +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTAEATA*CAGSIC
Trigger: ACAGATGCTGCCTGCACACCATGCTGTCGCCTCAGC...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACAGAGAGTGGTACTGCTaGTGTCAGGTGTGCTGGCGG +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDREWYC*CQVCWR
Trigger: CCGCCAGCACACCTGACACCAGCAGTACCACTCTCT...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCGAGGTGCTGTACTGCTaGCTGCGCCGTAGCAGCATT +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGEVLYC*LRRSSI
Trigger: AATGCTGCTACGGCGCAGCCAGCAGTACAGCACCTC...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTCAGGAGGGATTGTACTaGAGGTGGTCACAGGTGGCC +
Preference number: 4 (lower is better)
Translates to: RTDRWILLREMWQFSGCCQEGLY*RWSQVA
Trigger: GGCCACCTGTGACCACCTCCAGTACAATCCCTCCTG...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCCAGGAGGGATTGTACTaGAGGTGGTCACAGGTGGCC +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTQEGLY*RWSQVA
Trigger: GGCCACCTGTGACCACCTCCAGTACAATCCCTCCTG...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGCCCGATGGCCGGAAATaGGAATCAGGCTACTCCTCT +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTEPDGRK*ESGYSS
Trigger: AGAGGAGTAGCCTGATTCCCATTTCCGGCCATCGGG...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCGCTGGCTGGATCCCCTaGATATGTCGGGCATGTGAG +
Preference number: 4 (lower is better)
Translates to: PPDKYSLWAERLKPQPAIAGWIP*ICRACE
Trigger: CTCACATGCCCGACATATCCAGGGGATCCAGCCAGC...GATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCTCCCTGATGTCCCAATaGGGGCTGGCTGGATTCCCT +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTSLMSQ*GLAGFP
Trigger: AGGGAATCCAGCCAGCCCCCATTGGGACATCAGGGA...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTCCCTGATGTCCCAATaGGGGCTGGCTGGATTCCCT +
Preference number: 4 (lower is better)
Translates to: PPDKYSLWAERLKPQPAISLMSQ*GLAGFP
Trigger: AGGGAATCCAGCCAGCCCCCATTGGGACATCAGGGA...GATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGATTGGGGCTGCTGAATaGATTCCTGGGGTGCCAATT +
Preference number: 4 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLIGAAE*IPGVPI
Trigger: AATTGGCACCCCAGGAATCCATTCAGCAGCCCCAAT...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCGGGGAGAAGAGCCCTaGGCTGGTGTGTTGGTGCTA +
Preference number: 4 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERRGEEP*AGVLVL
Trigger: TAGCACCAACACACCAGCCCAGGGCTCTTCTCCCCG...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGCGGGGAGAAGAGCCCTaGGCTGGTGTGTTGGTGCTA +
Preference number: 4 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLRGEEP*AGVLVL
Trigger: TAGCACCAACACACCAGCCCAGGGCTCTTCTCCCCG...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCCAATCATGCTGGGAATaGTCGGTGGAGGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPQSCWE*SVEAAG
Trigger: CCCAGCAGCCTCCACCGACCATTCCCAGCATGATTG...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
54% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AGAGAGGATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCCTGCCGCAATCATGCTaGGAATGGTCGGTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: REDRLSKWILSVQAQLRPLPQSC*EWSVEA
Trigger: AGCCTCCACCGACCATTCCCAGCATGATTGCGGCAG...GGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTATCCTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCCGGCTCCGGGAATGGTaGAAAGGGCAATGGCTGGTT +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPRLREW*KGQWLV
Trigger: AACCAGCCATTGCCCTTTCCACCATTCCCGGAGCCG...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
54% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGGCACGGCTCCGGGAATaGTGGAAAGGGCAATGGCTG +
Preference number: 4 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLARLRE*WKGQWL
Trigger: CAGCCATTGCCCTTTCCACCATTCCCGGAGCCGTGC...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTAATGGTGGTGATGGGTaGAGTGACAGGCACGGCTCC +
Preference number: 4 (lower is better)
Translates to: RTDRWILLREMWQFSGCCNGGDG*SDRHGS
Trigger: GGAGCCGTGCCTGTCACTCCACCCATCACCACCATT...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCACTGCTTGCAATCTGTaGAGGTGGCTGGCTAAGCCC +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTTACNL*RWLAKP
Trigger: GGGCTTAGCCAGCCACCTTCACAGATTGCAAGCAGT...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACATGCCACGGGAATGGCTaGAGCTTGAGGGATGCTGCT +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTCHGNG*SLRDAA
Trigger: AGCAGCATCCCTCAAGCTTCAGCCATTCCCGTGGCA...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAGCCCCTGTTGTCCACTaGTTGTTGCCACGGGAATGG +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAEAPVVH*LLPREW
Trigger: CCATTCCCGTGGCAACAATCAGTGGACAACAGGGGC...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TTGAAAATGACAAGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTGGGAAGCTCCAATGTaGAGTGGGGGCCCGGGAGCG +
Preference number: 4 (lower is better)
Translates to: LKMTRTDRWILLREMWQFWEAPM*SGGPGA
Trigger: CGCTCCCGGGCCCCCACTTCACATTGGAGCTTCCCA...GAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCGGATTGGCTGGTGAATaGGGTGCTGTACTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTGLAGE*GAVLLA
Trigger: AGCCAGCAGTACAGCACCTCATTCACCAGCCAATCC...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGCTGCGCTCTGGTGGCTaGGACTGTTGCTACTACAGC +
Preference number: 4 (lower is better)
Translates to: EQLVLSALNLHKNPALTQLRSGG*DCCYYS
Trigger: GCTGTAGTAGCAACAGTCTCAGCCACCAGAGCGCAG...CTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGAGCAACTGGGATATTTaGAGTGGTCACAGCAGTAGC +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGSNWDI*SGHSSS
Trigger: GCTACTGCTGTGACCACTTCAAATATCCCAGTTGCT...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCGTGGAGTTTGGGGCTTaGGCAGAAACTGGGTACTGC +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTVEFGA*AETGYC
Trigger: GCAGTACCCAGTTTCTGCTCAAGCCCCAAACTCCAC...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGACACCAACACCAGTTTaGGCTGTGATGGTGGAGTTT +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGTPTPV*AVMVEF
Trigger: AAACTCCACCATCACAGCTCAAACTGGTGTTGGTGT...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACAGGATTCCCTGTGTACTaGTGGGTGCTGGCTGGATCC +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTGFPVY*WVLAGS
Trigger: GGATCCAGCCAGCACCCATCAGTACACAGGGAATCC...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGGTTGATTGGGGCTGCTaGATGGATTCCTGGGGTGCC +
Preference number: 4 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERVDWGC*MDSWGA
Trigger: GGCACCCCAGGAATCCATTCAGCAGCCCCAATCAAC...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGGTTGATTGGGGCTGCTaGATGGATTCCTGGGGTGCC +
Preference number: 4 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLVDWGC*MDSWGA
Trigger: GGCACCCCAGGAATCCATTCAGCAGCCCCAATCAAC...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACGAAGCCCCTGAGTGTTaGTTGGGGCTGCTGAATGGA +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDEAPEC*LGLLNG
Trigger: TCCATTCAGCAGCCCCAATCAACACTCAGGGGCTTC...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGATCAGGCTGTGGCTGCTaGTTAGCCATTGCTGCTGGC +
Preference number: 4 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGSGCGC*LAIAAG
Trigger: GCCAGCAGCAATGGCTAATCAGCAGCCACAGCCTGA...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGTCAGGCTGTGGCTGCTaGTTAGCCATTGCTGCTGGC +
Preference number: 4 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERSGCGC*LAIAAG
Trigger: GCCAGCAGCAATGGCTAATCAGCAGCCACAGCCTGA...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCGTGATGACAGGAGACTaGGCTCTGGTGGCTGAGACT +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGVMTGD*ALVAET
Trigger: AGTCTCAGCCACCAGAGCGCAGTCTCCTGTCATCAC...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCAGGTGCTACTGTAGCTaGAGCCACTGGTGTGCCAGT +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPRCYCS*SHWCAS
Trigger: ACTGGCACACCAGTGGCTGCAGCTACAGTAGCACCT...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGGGTTGCCAGAATAGGTaGTACTGTAGCTGCAGCCAC +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTEGCQNR*YCSCSH
Trigger: GTGGCTGCAGCTACAGTAGCACCTATTCTGGCAACC...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCGTGGGAGCTTGTGTGTaGGACACAGATCCAGCTGTG +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGVGACV*DTDPAV
Trigger: CACAGCTGGATCTGTGTCGCACACACAAGCTCCCAC...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCGGGGGTGTAGGTGTGTaGAGCCAGCGGGTAGGCAGA +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPGGVGV*SQRVGR
Trigger: TCTGCCTACCCGCTGGCTGCACACACCTACACCCCC...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGCAGGTGGACTGTAGATaGTACACCAACACCAGTTTG +
Preference number: 4 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLQVDCR*YTNTSL
Trigger: CAAACTGGTGTTGGTGTAGCATCTACAGTCCACCTG...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCCTGCTGATTAGCCATTaGTGCTGGCTGAAGCCCCTG +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTLLISH*CWLKPL
Trigger: CAGGGGCTTCAGCCAGCAGCAATGGCTAATCAGCAG...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGCTGGACCACTGTGGTTaGCGCTGGAGCAGCACTGAA +
Preference number: 4 (lower is better)
Translates to: EQLVLSALNLHKNPALTQLDHCG*RWSSTE
Trigger: TTCAGTGCTGCTCCAGCGGCAACCACAGTGGTCCAG...CTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGCTGGACCACTGTGGTTaGCGCTGGAGCAGCACTGAA +
Preference number: 4 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLLDHCG*RWSSTE
Trigger: TTCAGTGCTGCTCCAGCGGCAACCACAGTGGTCCAG...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATGGTCGGTGGAGGCTaGTGGGCAGTCGGAGGGACA +
Preference number: 4 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVMVGGG*WAVGGT
Trigger: TGTCCCTCCGACTGCCCAGCAGCCTCCACCGACCAT...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGGAGATCACGTGCTGCTaGTTTCGAGGCTTTTTCCTT +
Preference number: 4 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLEITCC*FRGFFL
Trigger: AAGGAAAAAGCCTCGAAAGCAGCAGCACGTGATCTC...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGAGGCCCACGTGCTCCCTaGTACCAACATCAGCATCTC +
Preference number: 4 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGGPRAP*YQHQHL
Trigger: GAGATGCTGATGTTGGTACCAGGGAGCACGTGGGCC...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAGCTGAGGCGACAGCATaGTGTGCAGGCAGCATCTGT +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAEAEATA*CAGSIC
Trigger: ACAGATGCTGCCTGCACACCATGCTGTCGCCTCAGC...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGAAGAGAGTGGTACTGCTaGTGTCAGGTGTGCTGGCGG +
Preference number: 4 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGREWYC*CQVCWR
Trigger: CCGCCAGCACACCTGACACCAGCAGTACCACTCTCT...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGAGAGAGTGGTACTGCTaGTGTCAGGTGTGCTGGCGG +
Preference number: 4 (lower is better)
Translates to: EQLVLSALNLHKNPALTQREWYC*CQVCWR
Trigger: CCGCCAGCACACCTGACACCAGCAGTACCACTCTCT...CTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGTTCCGAAAAAGAGAGTaGTACTGCTGGTGTCAGGTG +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGFRKRE*YCWCQV
Trigger: CACCTGACACCAGCAGTACCACTCTCTTTTTCGGAA...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGTGTGATGCAGGTTACTaGGATGCCCCTGTTGTCCAC +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTECDAGY*DAPVVH
Trigger: GTGGACAACAGGGGCATCCCAGTAACCTGCATCACA...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACGGATTGTACTGGAGGTaGTCACAGGTGGCCGAGACT +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDGLYWR*SQVAET
Trigger: AGTCTCGGCCACCTGTGACCACCTCCAGTACAATCC...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGTGTAGCTGCAGCCACTaGTGTGCCAGTACTAAAGAT +
Preference number: 4 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLCSCSH*CASTKD
Trigger: ATCTTTAGTACTGGCACACCAGTGGCTGCAGCTACA...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGCAGGCTACTCCTCTCTaGAGGGTAATCAGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTEQATPL*RVIRLD
Trigger: ATCCAGCCTGATTACCCTCCAGAGAGGAGTAGCCTG...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCCCCGATGGCCGGAAATaGGAATCAGGCTACTCCTCT +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGPDGRK*ESGYSS
Trigger: AGAGGAGTAGCCTGATTCCCATTTCCGGCCATCGGG...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACTTTGGAGAGGCCCGATaGCCGGAAATGGGAATCAGG +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDFGEAR*PEMGIR
Trigger: CCTGATTCCCATTTCCGGCCATCGGGCCTCTCCAAA...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGAGCTGGCTGGATCCCCTaGATATGTCGGGCATGTGAG +
Preference number: 4 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGAGWIP*ICRACE
Trigger: CTCACATGCCCGACATATCCAGGGGATCCAGCCAGC...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACTGATGGGTGCTGGCTaGATCCCCTGGATATGTCGG +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTLMGAG*IPWICR
Trigger: CCGACATATCCAGGGGATCCAGCCAGCACCCATCAG...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGATGGGTGCTGGCTaGATCCCCTGGATATGTCGG +
Preference number: 4 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERLMGAG*IPWICR
Trigger: CCGACATATCCAGGGGATCCAGCCAGCACCCATCAG...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCCCAATGGGGGCTGGCTaGATTCCCTGTGTACTGATG +
Preference number: 4 (lower is better)
Translates to: PPDKYSLWAERLKPQPAIPMGAG*IPCVLM
Trigger: CATCAGTACACAGGGAATCCAGCCAGCCCCCATTGG...GATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTTGTCCCAATGGGGGCTaGCTGGATTCCCTGTGTACT +
Preference number: 4 (lower is better)
Translates to: RTDRWILLREMWQFSGCCCPNGG*LDSLCT
Trigger: AGTACACAGGGAATCCAGCCAGCCCCCATTGGGACA...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGTCCCTGATGTCCCAATaGGGGCTGGCTGGATTCCCT +
Preference number: 4 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERSLMSQ*GLAGFP
Trigger: AGGGAATCCAGCCAGCCCCCATTGGGACATCAGGGA...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGTTTCCCCTCAGGCTGTaGCTGCTGATTAGCCATTGC +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTEFPLRL*LLISHC
Trigger: GCAATGGCTAATCAGCAGCCACAGCCTGAGGGGAAA...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCAGAAGAGCCCTGGGCTaGTGTGTTGGTGCTAGCACT +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPRRALG*CVGAST
Trigger: AGTGCTAGCACCAACACACCAGCCCAGGGCTCTTCT...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCAATCATGCTGGGAATaGTCGGTGGAGGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERQSCWE*SVEAAG
Trigger: CCCAGCAGCCTCCACCGACCATTCCCAGCATGATTG...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGACTGCCGCAATCATGCTaGGAATGGTCGGTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGLPQSC*EWSVEA
Trigger: AGCCTCCACCGACCATTCCCAGCATGATTGCGGCAG...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACAAATGGTGGTGATGGGTaGAGTGACAGGCACGGCTCC +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTNGGDG*SDRHGS
Trigger: GGAGCCGTGCCTGTCACTCCACCCATCACCACCATT...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCAGGTGGGAGGTCACTTaGAGGCATGGACAGGTTGCT +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTRWEVT*RHGQVA
Trigger: AGCAACCTGTCCATGCCTCCAAGTGACCTCCCACCT...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCAGGTGGGAGGTCACTTaGAGGCATGGACAGGTTGCT +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGRWEVT*RHGQVA
Trigger: AGCAACCTGTCCATGCCTCCAAGTGACCTCCCACCT...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGTCGAGGCTTTTTCCTTaGGGAGGCACCAGGTGGGAG +
Preference number: 4 (lower is better)
Translates to: EQLVLSALNLHKNPALTQSRLFP*GGTRWE
Trigger: CTCCCACCTGGTGCCTCCCCAAGGAAAAAGCCTCGA...CTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCAGGTCTGGGTCGCACTaGGACATACCTCACACCTTC +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPRSGSH*DIPHTF
Trigger: GAAGGTGTGAGGTATGTCCCAGTGCGACCCAGACCT...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACAGGTCTGGGTCGCACTaGGACATACCTCACACCTTC +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDRSGSH*DIPHTF
Trigger: GAAGGTGTGAGGTATGTCCCAGTGCGACCCAGACCT...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGACTGCTTGCAATCTGTaGAGGTGGCTGGCTAAGCCC +
Preference number: 4 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLTACNL*RWLAKP
Trigger: GGGCTTAGCCAGCCACCTTCACAGATTGCAAGCAGT...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGGGATTGGCTGGTGAATaGGGTGCTGTACTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLGLAGE*GAVLLA
Trigger: AGCCAGCAGTACAGCACCTCATTCACCAGCCAATCC...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGCTAAAGATGGTTTTCTaGGCCATTGTATGGAGCTGC +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGLKMVF*AIVWSC
Trigger: GCAGCTCCATACAATGGCTCAGAAAACCATCTTTAG...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGAGTGGAGTTTGGGGCTTaGGCAGAAACTGGGTACTGC +
Preference number: 4 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGVEFGA*AETGYC
Trigger: GCAGTACCCAGTTTCTGCTCAAGCCCCAAACTCCAC...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTCACCAGTTTGAGCTGTaGTGGTGGAGTTTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: RTDRWILLREMWQFSGCCHQFEL*WWSLGL
Trigger: AAGCCCCAAACTCCACCATCACAGCTCAAACTGGTG...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCCACCAGTTTGAGCTGTaGTGGTGGAGTTTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGHQFEL*WWSLGL
Trigger: AAGCCCCAAACTCCACCATCACAGCTCAAACTGGTG...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACAGAAGCCCCTGAGTGTTaGTTGGGGCTGCTGAATGGA +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTEAPEC*LGLLNG
Trigger: TCCATTCAGCAGCCCCAATCAACACTCAGGGGCTTC...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCTTGGTGCTAGCACTCTaGCTGTGTGTCTGGACCACT +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGLVLAL*LCVWTT
Trigger: AGTGGTCCAGACACACAGTCAGAGTGCTAGCACCAA...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACCTTTCTTCTCCTCTTTaGCCCGGACGTCACTGTACC +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDLSSPL*PGRHCT
Trigger: GGTACAGTGACGTCCGGGTCAAAGAGGAGAAGAAAG...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025109.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTATGGGCAGCACAGAGGTaGACTTTCCAGCCCTGGGCA +
Preference number: 4 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVWAAQR*TFQPWA
Trigger: TGCCCAGGGCTGGAAAGTTCACCTCTGTGCTGCCCA...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGCTTCCTGTAGGTTGGTaGGTCTTTCATAAACGTCGT +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGLPVGW*VFHKRR
Trigger: ACGACGTTTATGAAAGACTCACCAACCTACAGGAAG...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGCTTCCTGTAGGTTGGTaGGTCTTTCATAAACGTCGT +
Preference number: 4 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLLPVGW*VFHKRR
Trigger: ACGACGTTTATGAAAGACTCACCAACCTACAGGAAG...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AGAGAGGATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCCTTCCGCTTCAACTTTaGCACCTTCTTGACCGTCCC +
Preference number: 4 (lower is better)
Translates to: REDRLSKWILSVQAQLRPLPLQL*HLLDRP
Trigger: GGGACGGTCAAGAAGGTGTCAAAGTTGAAGCGGAAG...GGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTATCCTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGAGTGATGACAGGAGACTaGGCTCTGGTGGCTGAGACT +
Preference number: 4 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGVMTGD*ALVAET
Trigger: AGTCTCAGCCACCAGAGCGCAGTCTCCTGTCATCAC...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGGCTGCAGATGGTGGATaGTGGATAGATAAAGTGGGC +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTEAADGG*WIDKVG
Trigger: GCCCACTTTATCTATCCAGCATCCACCATCTGCAGC...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGGCCATTGTATGGAGCTaGTGTTTCGGAGTCCCTAAC +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTEAIVWS*CFGVPN
Trigger: GTTAGGGACTCCGAAACAGCAGCTCCATACAATGGC...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGTGCTACTGTAGCTaGAGCCACTGGTGTGCCAGT +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAERCYCS*SHWCAS
Trigger: ACTGGCACACCAGTGGCTGCAGCTACAGTAGCACCT...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGAAGGTGCTACTGTAGCTaGAGCCACTGGTGTGCCAGT +
Preference number: 4 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGRCYCS*SHWCAS
Trigger: ACTGGCACACCAGTGGCTGCAGCTACAGTAGCACCT...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACGGTTGCCAGAATAGGTaGTACTGTAGCTGCAGCCAC +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDGCQNR*YCSCSH
Trigger: GTGGCTGCAGCTACAGTAGCACCTATTCTGGCAACC...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTGAAGTGTGTGTGATCTaGTGGGGCACCACCTTAGCA +
Preference number: 4 (lower is better)
Translates to: RTDRWILLREMWQFSGCCEVCVI*WGTTLA
Trigger: TGCTAAGGTGGTGCCCCAGCAGATCACACACACTTC...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCGAAGTGTGTGTGATCTaGTGGGGCACCACCTTAGCA +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTEVCVI*WGTTLA
Trigger: TGCTAAGGTGGTGCCCCAGCAGATCACACACACTTC...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCTCCACTGTCATCAGCTaGATGGGGTTCAGGTGGACT +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTSTVIS*MGFRWT
Trigger: AGTCCACCTGAACCCCATGCAGCTGATGACAGTGGA...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AGAGAGGATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTCCACTGTCATCAGCTaGATGGGGTTCAGGTGGACT +
Preference number: 4 (lower is better)
Translates to: REDRLSKWILSVQAQLRPSTVIS*MGFRWT
Trigger: AGTCCACCTGAACCCCATGCAGCTGATGACAGTGGA...GGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTATCCTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAACTGTGTACTGATGGGTaGTGGCTGGATCCCCTGGAT +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAELCTDG*WLDPLD
Trigger: ATCCAGGGGATCCAGCCAGCACCCATCAGTACACAG...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGCTGTGTACTGATGGGTaGTGGCTGGATCCCCTGGAT +
Preference number: 4 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLLCTDG*WLDPLD
Trigger: ATCCAGGGGATCCAGCCAGCACCCATCAGTACACAG...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGCTGATTAGCCATTaGTGCTGGCTGAAGCCCCTG +
Preference number: 4 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERLLISH*CWLKPL
Trigger: CAGGGGCTTCAGCCAGCAGCAATGGCTAATCAGCAG...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCGAGGCATGGACAGGTTaGTTGCCAGCAAAGCAAGAG +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGEAWTG*LPAKQE
Trigger: CTCTTGCTTTGCTGGCAAGCAACCTGTCCATGCCTC...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGGTCGAGATCACGTGCTaGTGCTTTCGAGGCTTTTTC +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTEVEITC*CFRGFF
Trigger: GAAAAAGCCTCGAAAGCAGCAGCACGTGATCTCGAC...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACTTGTTGCCACGGGAATaGCTGAAGCTTGAGGGATGC +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDLLPRE*LKLEGC
Trigger: GCATCCCTCAAGCTTCAGCCATTCCCGTGGCAACAA...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCTGTGATGCAGGTTACTaGGATGCCCCTGTTGTCCAC +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPCDAGY*DAPVVH
Trigger: GTGGACAACAGGGGCATCCCAGTAACCTGCATCACA...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCTGTGATGCAGGTTACTaGGATGCCCCTGTTGTCCAC +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTCDAGY*DAPVVH
Trigger: GTGGACAACAGGGGCATCCCAGTAACCTGCATCACA...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAGGAGGTGGTCACAGGTaGCCGAGACTGGATTGGCTG +
Preference number: 4 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVGGGHR*PRLDWL
Trigger: CAGCCAATCCAGTCTCGGCCACCTGTGACCACCTCC...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGGGATTGTACTGGAGGTaGTCACAGGTGGCCGAGACT +
Preference number: 4 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLGLYWR*SQVAET
Trigger: AGTCTCGGCCACCTGTGACCACCTCCAGTACAATCC...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGACAGGAGACTGCGCTCTaGTGGCTGAGACTGTTGCTA +
Preference number: 4 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGQETAL*WLRLLL
Trigger: TAGCAACAGTCTCAGCCACCAGAGCGCAGTCTCCTG...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCGTGTGTGTGATCTGCTaGGGCACCACCTTAGCAACT +
Preference number: 4 (lower is better)
Translates to: PPDKYSLWAERLKPQPAIVCVIC*GTTLAT
Trigger: AGTTGCTAAGGTGGTGCCCCAGCAGATCACACACAC...GATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACGTGTGTGTGATCTGCTaGGGCACCACCTTAGCAACT +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDVCVIC*GTTLAT
Trigger: AGTTGCTAAGGTGGTGCCCCAGCAGATCACACACAC...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGTTTGGAGAGGCCCGATaGCCGGAAATGGGAATCAGG +
Preference number: 4 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERFGEAR*PEMGIR
Trigger: CCTGATTCCCATTTCCGGCCATCGGGCCTCTCCAAA...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAGGTTTCCATGGCCACTaGATTTGGAGAGGCCCGATG +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAEGFHGH*IWRGPM
Trigger: CATCGGGCCTCTCCAAATCCAGTGGCCATGGAAACC...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACCGGGTAGGCAGAGGGTaGGTAAGTTGGCAAGAAGTA +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDRVGRG*VSWQEV
Trigger: TACTTCTTGCCAACTTACCCACCCTCTGCCTACCCG...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTCGGGTAGGCAGAGGGTaGGTAAGTTGGCAAGAAGTA +
Preference number: 4 (lower is better)
Translates to: RTDRWILLREMWQFSGCCRVGRG*VSWQEV
Trigger: TACTTCTTGCCAACTTACCCACCCTCTGCCTACCCG...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AGAGAGGATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTGTACTGATGGGTGCTaGCTGGATCCCCTGGATATG +
Preference number: 4 (lower is better)
Translates to: REDRLSKWILSVQAQLRPCTDGC*LDPLDM
Trigger: CATATCCAGGGGATCCAGCCAGCACCCATCAGTACA...GGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTATCCTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGCCAATGGGGGCTGGCTaGATTCCCTGTGTACTGATG +
Preference number: 4 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLPMGAG*IPCVLM
Trigger: CATCAGTACACAGGGAATCCAGCCAGCCCCCATTGG...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGTGTCCCAATGGGGGCTaGCTGGATTCCCTGTGTACT +
Preference number: 4 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERCPNGG*LDSLCT
Trigger: AGTACACAGGGAATCCAGCCAGCCCCCATTGGGACA...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACTTTCCCCTCAGGCTGTaGCTGCTGATTAGCCATTGC +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDFPLRL*LLISHC
Trigger: GCAATGGCTAATCAGCAGCCACAGCCTGAGGGGAAA...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACAAATGGCTGGTTGGGATaGAGGACTGGCTGCCGCAAT +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTNGWLG*RTGCRN
Trigger: ATTGCGGCAGCCAGTCCTCCATCCCAACCAGCCATT...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGTGGTGGAAAGGGCAATaGCTGGTTGGGATGGAGGAC +
Preference number: 4 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERWWKGQ*LVGMED
Trigger: GTCCTCCATCCCAACCAGCCATTGCCCTTTCCACCA...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAATGGTGGAAAGGGCAATaGCTGGTTGGGATGGAGGAC +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAEWWKGQ*LVGMED
Trigger: GTCCTCCATCCCAACCAGCCATTGCCCTTTCCACCA...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGTCTGGGTCGCACTaGGACATACCTCACACCTTC +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAERSGSH*DIPHTF
Trigger: GAAGGTGTGAGGTATGTCCCAGTGCGACCCAGACCT...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGCTGGCCTCACTGATTTaGTCCATCACTAGTTTACAC +
Preference number: 4 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGLASLI*SITSLH
Trigger: GTGTAAACTAGTGATGGACCAAATCAGTGAGGCCAG...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCGCCCCTGTTGTCCACTaGTTGTTGCCACGGGAATGG +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPAPVVH*LLPREW
Trigger: CCATTCCCGTGGCAACAATCAGTGGACAACAGGGGC...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGACACCAACACCAGTTTaGGCTGTGATGGTGGAGTTT +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTETPTPV*AVMVEF
Trigger: AAACTCCACCATCACAGCTCAAACTGGTGTTGGTGT...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTATCAGGCTGTGGCTGCTaGTTAGCCATTGCTGCTGGC +
Preference number: 4 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVSGCGC*LAIAAG
Trigger: GCCAGCAGCAATGGCTAATCAGCAGCCACAGCCTGA...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCCTTCTTCCTTCACTTTaGTCTCAGGAACAGGAGGCC +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGLLPSL*SQEQEA
Trigger: GGCCTCCTGTTCCTGAGATCAAAGTGAAGGAAGAAG...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTAGCACCCGGTCCTTGTaGTCCAGAACCTTAAGCATA +
Preference number: 4 (lower is better)
Translates to: RTDRWILLREMWQFSGCCSTRSL*SRTLSI
Trigger: TATGCTTAAGGTTCTGGATCACAAGGACCGGGTGCT...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TTGAAAATGACAAGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCCCGTCCCGTTCTTGTTaGGCAGCTTCAGCACCCGGT +
Preference number: 4 (lower is better)
Translates to: LKMTRTDRWILLREMWQFPSRSC*AASAPG
Trigger: ACCGGGTGCTGAAGCTGCTCAACAAGAACGGGACGG...GAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACTTCCGCTTCAACTTTaGCACCTTCTTGACCGTCCC +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTLPLQL*HLLDRP
Trigger: GGGACGGTCAAGAAGGTGTCAAAGTTGAAGCGGAAG...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCAAAAGAGAGTGGTACTaGTGGTGTCAGGTGTGCTGG +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTKREWY*WCQVCW
Trigger: CCAGCACACCTGACACCAGCAGTACCACTCTCTTTT...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCGCTGCAGATGGTGGATaGTGGATAGATAAAGTGGGC +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGAADGG*WIDKVG
Trigger: GCCCACTTTATCTATCCAGCATCCACCATCTGCAGC...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGGAGGCATGGACAGGTTaGTTGCCAGCAAAGCAAGAG +
Preference number: 4 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLEAWTG*LPAKQE
Trigger: CTCTTGCTTTGCTGGCAAGCAACCTGTCCATGCCTC...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCGTCGAGATCACGTGCTaGTGCTTTCGAGGCTTTTTC +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTVEITC*CFRGFF
Trigger: GAAAAAGCCTCGAAAGCAGCAGCACGTGATCTCGAC...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCCAGCATCTGTACCTGTaGATAGGGCCTTACCACAAC +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPQHLYL*IGPYHN
Trigger: GTTGTGGTAAGGCCCTATCCACAGGTACAGATGCTG...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
51% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCCAGCATCTGTACCTGTaGATAGGGCCTTACCACAAC +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTQHLYL*IGPYHN
Trigger: GTTGTGGTAAGGCCCTATCCACAGGTACAGATGCTG...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAGCTGAGGCGACAGCATaGTGTGCAGGCAGCATCTGT +
Preference number: 4 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVAEATA*CAGSIC
Trigger: ACAGATGCTGCCTGCACACCATGCTGTCGCCTCAGC...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TTGAAAATGACAAGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCACTGCGACAGGGGTaGCTGAGGCGACAGCATGGT +
Preference number: 4 (lower is better)
Translates to: LKMTRTDRWILLREMWQFSLRQG*LRRQHG
Trigger: ACCATGCTGTCGCCTCAGCCACCCCTGTCGCAGTGA...GAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCGTCACAGCAGTAGCATaGGATGAATGGGAGGGCATT +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTVTAVA*DEWEGI
Trigger: AATGCCCTCCCATTCATCCCATGCTACTGCTGTGAC...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCTACTCCTCTCTaGAGGGTAATCAGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTQATPL*RVIRLD
Trigger: ATCCAGCCTGATTACCCTCCAGAGAGGAGTAGCCTG...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TTGAAAATGACAAGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCCATGGCCACTGGATTTaGAGAGGCCCGATGGCCGGA +
Preference number: 4 (lower is better)
Translates to: LKMTRTDRWILLREMWQFHGHWI*RGPMAG
Trigger: TCCGGCCATCGGGCCTCTCCAAATCCAGTGGCCATG...GAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACTGTGATGGTGGAGTTTaGGGCTTGAGCAGAAACTGG +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDCDGGV*GLSRNW
Trigger: CCAGTTTCTGCTCAAGCCCCAAACTCCACCATCACA...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCTGCATGGGGTTCAGGTaGACTGTAGATGCTACACCA +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTCMGFR*TVDATP
Trigger: TGGTGTAGCATCTACAGTCCACCTGAACCCCATGCA...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTTGCATGGGGTTCAGGTaGACTGTAGATGCTACACCA +
Preference number: 4 (lower is better)
Translates to: RTDRWILLREMWQFSGCCCMGFR*TVDATP
Trigger: TGGTGTAGCATCTACAGTCCACCTGAACCCCATGCA...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACTGCATGGGGTTCAGGTaGACTGTAGATGCTACACCA +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDCMGFR*TVDATP
Trigger: TGGTGTAGCATCTACAGTCCACCTGAACCCCATGCA...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAGCTGGCTGGATCCCCTaGATATGTCGGGCATGTGAG +
Preference number: 4 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVAGWIP*ICRACE
Trigger: CTCACATGCCCGACATATCCAGGGGATCCAGCCAGC...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAATGTACTGATGGGTGCTaGCTGGATCCCCTGGATATG +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAECTDGC*LDPLDM
Trigger: CATATCCAGGGGATCCAGCCAGCACCCATCAGTACA...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCATTAGCCATTGCTGCTaGCTGAAGCCCCTGAGTGTT +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPISHCC*LKPLSV
Trigger: AACACTCAGGGGCTTCAGCCAGCAGCAATGGCTAAT...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGTTTCCCCTCAGGCTGTaGCTGCTGATTAGCCATTGC +
Preference number: 4 (lower is better)
Translates to: EQLVLSALNLHKNPALTQFPLRL*LLISHC
Trigger: GCAATGGCTAATCAGCAGCCACAGCCTGAGGGGAAA...CTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCTGGAGCAGCACTGAATaGGTTGCTAATAGGGTTGGC +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPWSSTE*VANRVG
Trigger: GCCAACCCTATTAGCAACCCATTCAGTGCTGCTCCA...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACTGCCATCCCATCTGTaGCAGGTTTCTTCCGCAGTA +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTLPSHL*QVSSAV
Trigger: TACTGCGGAAGAAACCTGCCACAGATGGGATGGCAG...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAACTGCCATCCCATCTGTaGCAGGTTTCTTCCGCAGTA +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAELPSHL*QVSSAV
Trigger: TACTGCGGAAGAAACCTGCCACAGATGGGATGGCAG...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTACTGCCGCAATCATGCTaGGAATGGTCGGTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVLPQSC*EWSVEA
Trigger: AGCCTCCACCGACCATTCCCAGCATGATTGCGGCAG...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCCGGCTCCGGGAATGGTaGAAAGGGCAATGGCTGGTT +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPRLREW*KGQWLV
Trigger: AACCAGCCATTGCCCTTTCCACCATTCCCGGAGCCG...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCGAGGCTTTTTCCTTaGGGAGGCACCAGGTGGGAG +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPSRLFP*GGTRWE
Trigger: CTCCCACCTGGTGCCTCCCCAAGGAAAAAGCCTCGA...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCAGCAACTGGGATATTTaGAGTGGTCACAGCAGTAGC +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPSNWDI*SGHSSS
Trigger: GCTACTGCTGTGACCACTTCAAATATCCCAGTTGCT...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGTGGAGACAGGCCTGGTaGTGTCCACTGGCTCCGCTT +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRWRQAW*CPLAPL
Trigger: AAGCGGAGCCAGTGGACATCACCAGGCCTGTCTCCA...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAGCACCCGGTCCTTGTaGTCCAGAACCTTAAGCATA +
Preference number: 4 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLSTRSL*SRTLSI
Trigger: TATGCTTAAGGTTCTGGATCACAAGGACCGGGTGCT...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGAGCACCCGGTCCTTGTaGTCCAGAACCTTAAGCATA +
Preference number: 4 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERSTRSL*SRTLSI
Trigger: TATGCTTAAGGTTCTGGATCACAAGGACCGGGTGCT...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGAAAAGAGAGTGGTACTaGTGGTGTCAGGTGTGCTGG +
Preference number: 4 (lower is better)
Translates to: EQLVLSALNLHKNPALTQKREWY*WCQVCW
Trigger: CCAGCACACCTGACACCAGCAGTACCACTCTCTTTT...CTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGTGCAGGTTACTGGGATaGCCCTGTTGTCCACTGATT +
Preference number: 4 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERCRLLG*PCCPLI
Trigger: AATCAGTGGACAACAGGGGCATCCCAGTAACCTGCA...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp TTGAAAATGACAAGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTGCTGTACTGCTGGCTaGGCCGTAGCAGCATTTGGC +
Preference number: 4 (lower is better)
Translates to: LKMTRTDRWILLREMWQFCCTAG*AVAAFG
Trigger: GCCAAATGCTGCTACGGCGCAGCCAGCAGTACAGCA...GAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACAGCCATTGTATGGAGCTaGTGTTTCGGAGTCCCTAAC +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTAIVWS*CFGVPN
Trigger: GTTAGGGACTCCGAAACAGCAGCTCCATACAATGGC...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTCAGGTGGACTGTAGATaGTACACCAACACCAGTTTG +
Preference number: 4 (lower is better)
Translates to: RTDRWILLREMWQFSGCCQVDCR*YTNTSL
Trigger: CAAACTGGTGTTGGTGTAGCATCTACAGTCCACCTG...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTACTGTGTACTGATGGGTaGTGGCTGGATCCCCTGGAT +
Preference number: 4 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVLCTDG*WLDPLD
Trigger: ATCCAGGGGATCCAGCCAGCACCCATCAGTACACAG...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCGAGATCACGTGCTGCTaGTTTCGAGGCTTTTTCCTT +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGEITCC*FRGFFL
Trigger: AAGGAAAAAGCCTCGAAAGCAGCAGCACGTGATCTC...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACGAGATCACGTGCTGCTaGTTTCGAGGCTTTTTCCTT +
Preference number: 4 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDEITCC*FRGFFL
Trigger: AAGGAAAAAGCCTCGAAAGCAGCAGCACGTGATCTC...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAGTCGAGATCACGTGCTaGTGCTTTCGAGGCTTTTTC +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAEVEITC*CFRGFF
Trigger: GAAAAAGCCTCGAAAGCAGCAGCACGTGATCTCGAC...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGATCTGTCGAGATCACGTaGTGCTGCTTTCGAGGCTTT +
Preference number: 4 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGSVEIT*CCFRGF
Trigger: AAAGCCTCGAAAGCAGCAGCACGTGATCTCGACAGA...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAATCTGTCGAGATCACGTaGTGCTGCTTTCGAGGCTTT +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAESVEIT*CCFRGF
Trigger: AAAGCCTCGAAAGCAGCAGCACGTGATCTCGACAGA...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACATCTGTCGAGATCACGTaGTGCTGCTTTCGAGGCTTT +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTSVEIT*CCFRGF
Trigger: AAAGCCTCGAAAGCAGCAGCACGTGATCTCGACAGA...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTTTCCGAAAAAGAGAGTaGTACTGCTGGTGTCAGGTG +
Preference number: 4 (lower is better)
Translates to: RTDRWILLREMWQFSGCCFRKRE*YCWCQV
Trigger: CACCTGACACCAGCAGTACCACTCTCTTTTTCGGAA...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTCGTTGCTGCGGATTATaGACATCTGCACATTTGTGG +
Preference number: 4 (lower is better)
Translates to: RTDRWILLREMWQFSGCCRCCGL*TSAHLW
Trigger: CCACAAATGTGCAGATGTCCATAATCCGCAGCAACG...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCCGTTGCTGCGGATTATaGACATCTGCACATTTGTGG +
Preference number: 4 (lower is better)
Translates to: PPDKYSLWAERLKPQPAIRCCGL*TSAHLW
Trigger: CCACAAATGTGCAGATGTCCATAATCCGCAGCAACG...GATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAGGATTGTACTGGAGGTaGTCACAGGTGGCCGAGACT +
Preference number: 4 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVGLYWR*SQVAET
Trigger: AGTCTCGGCCACCTGTGACCACCTCCAGTACAATCC...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTAGCTGCAGCCACTaGTGTGCCAGTACTAAAGAT +
Preference number: 4 (lower is better)
Translates to: PPDKYSLWAERLKPQPAICSCSH*CASTKD
Trigger: ATCTTTAGTACTGGCACACCAGTGGCTGCAGCTACA...GATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAACATGGCCACTGGATTTaGAGAGGCCCGATGGCCGGA +
Preference number: 4 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQHGHWI*RGPMAG
Trigger: TCCGGCCATCGGGCCTCTCCAAATCCAGTGGCCATG...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCGGTTTCCATGGCCACTaGATTTGGAGAGGCCCGATG +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPGFHGH*IWRGPM
Trigger: CATCGGGCCTCTCCAAATCCAGTGGCCATGGAAACC...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCATTTCGGGTTTCCATaGCCACTGGATTTGGAGAGG +
Preference number: 4 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERHFGFP*PLDLER
Trigger: CCTCTCCAAATCCAGTGGCCATGGAAACCCGAAATG...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGATGTGATGGTGGAGTTTaGGGCTTGAGCAGAAACTGG +
Preference number: 4 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGCDGGV*GLSRNW
Trigger: CCAGTTTCTGCTCAAGCCCCAAACTCCACCATCACA...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCCCAATGGGGGCTGGCTaGATTCCCTGTGTACTGATG +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPPMGAG*IPCVLM
Trigger: CATCAGTACACAGGGAATCCAGCCAGCCCCCATTGG...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
50% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACAATTGGGGCTGCTGAATaGATTCCTGGGGTGCCAATT +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTIGAAE*IPGVPI
Trigger: AATTGGCACCCCAGGAATCCATTCAGCAGCCCCAAT...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGAATTAGCCATTGCTGCTaGCTGAAGCCCCTGAGTGTT +
Preference number: 4 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGISHCC*LKPLSV
Trigger: AACACTCAGGGGCTTCAGCCAGCAGCAATGGCTAAT...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACATGGAGCAGCACTGAATaGGTTGCTAATAGGGTTGGC +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTWSSTE*VANRVG
Trigger: GCCAACCCTATTAGCAACCCATTCAGTGCTGCTCCA...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAAGTGTCTGGACCACTGTaGTTGCCGCTGGAGCAGCAC +
Preference number: 4 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQVSGPL*LPLEQH
Trigger: GTGCTGCTCCAGCGGCAACCACAGTGGTCCAGACAC...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTGTGTCTGGACCACTGTaGTTGCCGCTGGAGCAGCAC +
Preference number: 4 (lower is better)
Translates to: SVPPDLLPQVNEEKCPVIVSGPL*LPLEQH
Trigger: GTGCTGCTCCAGCGGCAACCACAGTGGTCCAGACAC...AATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAAGAAGAGCCCTGGGCTaGTGTGTTGGTGCTAGCACT +
Preference number: 4 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVRRALG*CVGAST
Trigger: AGTGCTAGCACCAACACACCAGCCCAGGGCTCTTCT...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TTGAAAATGACAAGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCCAATCATGCTGGGAATaGTCGGTGGAGGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: LKMTRTDRWILLREMWQFQSCWE*SVEAAG
Trigger: CCCAGCAGCCTCCACCGACCATTCCCAGCATGATTG...GAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAAATGGCTGGTTGGGATaGAGGACTGGCTGCCGCAAT +
Preference number: 4 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVNGWLG*RTGCRN
Trigger: ATTGCGGCAGCCAGTCCTCCATCCCAACCAGCCATT...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGAGGGCAATGGCTGGTTaGGATGGAGGACTGGCTGCC +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRRAMAG*DGGLAA
Trigger: GGCAGCCAGTCCTCCATCCCAACCAGCCATTGCCCT...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAAGAGACACCGTGTTGGTaGCCAGAGGAGGGACTGTGG +
Preference number: 4 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQETPCW*PEEGLW
Trigger: CCACAGTCCCTCCTCTGGCCACCAACACGGTGTCTC...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCGGTCACTTGGAGGCATaGACAGGTTGCTTGCCAGCA +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPGHLEA*TGCLPA
Trigger: TGCTGGCAAGCAACCTGTCCATGCCTCCAAGTGACC...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGTTACCAGGAGACTCTTaGCAGCGGACTTCTCATCGT +
Preference number: 4 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLLPGDS*QRTSHR
Trigger: ACGATGAGAAGTCCGCTGCCAAGAGTCTCCTGGTAA...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCTTTGTGGTCATAATGTaGTGCAGGTTACTGGGATGC +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTFVVIM*CRLLGC
Trigger: GCATCCCAGTAACCTGCATCACATTATGACCACAAA...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCTGCGCTCTGGTGGCTaGGACTGTTGCTACTACAGC +
Preference number: 4 (lower is better)
Translates to: SVPPDLLPQVNEEKCPVILRSGG*DCCYYS
Trigger: GCTGTAGTAGCAACAGTCTCAGCCACCAGAGCGCAG...AATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGAGTCCCTAACGCAGGATaGGAAGGTAGTGTGATTCTT +
Preference number: 4 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGVPNAG*EGSVIL
Trigger: AAGAATCACACTACCTTCTCATCCTGCGTTAGGGAC...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAGTCCCTAACGCAGGATaGGAAGGTAGTGTGATTCTT +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAEVPNAG*EGSVIL
Trigger: AAGAATCACACTACCTTCTCATCCTGCGTTAGGGAC...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TTGAAAATGACAAGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCGTGGAGTTTGGGGCTTaGGCAGAAACTGGGTACTGC +
Preference number: 4 (lower is better)
Translates to: LKMTRTDRWILLREMWQFVEFGA*AETGYC
Trigger: GCAGTACCCAGTTTCTGCTCAAGCCCCAAACTCCAC...GAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCGATATGTCGGGCATGTaGGGCATCCACTGTCATCAG +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPDMSGM*GIHCHQ
Trigger: CTGATGACAGTGGATGCCTCACATGCCCGACATATC...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGGGATTCCCTGTGTACTaGTGGGTGCTGGCTGGATCC +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRGFPVY*WVLAGS
Trigger: GGATCCAGCCAGCACCCATCAGTACACAGGGAATCC...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCCAGGACACTCCTTTCTaGTTAGCTATTTCCTGTAGC +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTQDTPF*LAISCS
Trigger: GCTACAGGAAATAGCTAATCAGAAAGGAGTGTCCTG...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCCTTCCTGTAGGTTGGTaGGTCTTTCATAAACGTCGT +
Preference number: 4 (lower is better)
Translates to: KYSLWAERLKPQPAICVTLPVGW*VFHKRR
Trigger: ACGACGTTTATGAAAGACTCACCAACCTACAGGAAG...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGTCTCTGGCCTCACTaGTTTGGTCCATCACTAGTT +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAESLWPH*FGPSLV
Trigger: AACTAGTGATGGACCAAATCAGTGAGGCCAGAGACT...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACAAGTCTCTGGCCTCACTaGTTTGGTCCATCACTAGTT +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTSLWPH*FGPSLV
Trigger: AACTAGTGATGGACCAAATCAGTGAGGCCAGAGACT...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGAGGAAGCGTGTTGGTTaGCAGAATAGGTGCTACTGT +
Preference number: 4 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERRKRVG*QNRCYC
Trigger: ACAGTAGCACCTATTCTGGCAACCAACACGCTTCCT...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGAAGCGTGTTGGTTaGCAGAATAGGTGCTACTGT +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAERKRVG*QNRCYC
Trigger: ACAGTAGCACCTATTCTGGCAACCAACACGCTTCCT...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTTGTTGCCACGGGAATaGCTGAAGCTTGAGGGATGC +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPLLPRE*LKLEGC
Trigger: GCATCCCTCAAGCTTCAGCCATTCCCGTGGCAACAA...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGGAGGTGCTGTACTGCTaGCTGCGCCGTAGCAGCATT +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITREVLYC*LRRSSI
Trigger: AATGCTGCTACGGCGCAGCCAGCAGTACAGCACCTC...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCCAGGCTACTCCTCTCTaGAGGGTAATCAGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPQATPL*RVIRLD
Trigger: ATCCAGCCTGATTACCCTCCAGAGAGGAGTAGCCTG...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TTGAAAATGACAAGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCCCCGATGGCCGGAAATaGGAATCAGGCTACTCCTCT +
Preference number: 4 (lower is better)
Translates to: LKMTRTDRWILLREMWQFPDGRK*ESGYSS
Trigger: AGAGGAGTAGCCTGATTCCCATTTCCGGCCATCGGG...GAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCCTGCCATCCCATCTGTaGCAGGTTTCTTCCGCAGTA +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPLPSHL*QVSSAV
Trigger: TACTGCGGAAGAAACCTGCCACAGATGGGATGGCAG...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TTGAAAATGACAAGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCGGTCACTTGGAGGCATaGACAGGTTGCTTGCCAGCA +
Preference number: 4 (lower is better)
Translates to: LKMTRTDRWILLREMWQFGHLEA*TGCLPA
Trigger: TGCTGGCAAGCAACCTGTCCATGCCTCCAAGTGACC...GAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCCATCAATGTACTCTTTaGGAGGAGACTTGCGCTTCT +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGHQCTL*EETCAS
Trigger: AGAAGCGCAAGTCTCCTCCCAAAGAGTACATTGATG...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCCATCAATGTACTCTTTaGGAGGAGACTTGCGCTTCT +
Preference number: 4 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPHQCTL*EETCAS
Trigger: AGAAGCGCAAGTCTCCTCCCAAAGAGTACATTGATG...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
49% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
3UTR CAA 72 bp CTTTTGAAAATGACAAGAACTGATCGCTGGATCCTTTaGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: LLKMTRTDRWIL*REMWQFSGCCG
Trigger: GCCACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTACTGCTTGCAATCTGTaGAGGTGGCTGGCTAAGCCC +
Preference number: 4 (lower is better)
Translates to: SVPPDLLPQVNEEKCPVITACNL*RWLAKP
Trigger: GGGCTTAGCCAGCCACCTTCACAGATTGCAAGCAGT...AATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGTTTGTGGTCATAATGTaGTGCAGGTTACTGGGATGC +
Preference number: 4 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERFVVIM*CRLLGC
Trigger: GCATCCCAGTAACCTGCATCACATTATGACCACAAA...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGGGATTGGCTGGTGAATaGGGTGCTGTACTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRGLAGE*GAVLLA
Trigger: AGCCAGCAGTACAGCACCTCATTCACCAGCCAATCC...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGCTAAAGATGGTTTTCTaGGCCATTGTATGGAGCTGC +
Preference number: 4 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLLKMVF*AIVWSC
Trigger: GCAGCTCCATACAATGGCTCAGAAAACCATCTTTAG...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TTGAAAATGACAAGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCCACCAGTTTGAGCTGTaGTGGTGGAGTTTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: LKMTRTDRWILLREMWQFHQFEL*WWSLGL
Trigger: AAGCCCCAAACTCCACCATCACAGCTCAAACTGGTG...GAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGCAGGACACTCCTTTCTaGTTAGCTATTTCCTGTAGC +
Preference number: 4 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLQDTPF*LAISCS
Trigger: GCTACAGGAAATAGCTAATCAGAAAGGAGTGTCCTG...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGACACTCCTTTCTaGTTAGCTATTTCCTGTAGC +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTQDTPF*LAISCS
Trigger: GCTACAGGAAATAGCTAATCAGAAAGGAGTGTCCTG...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAAAAAGAGAGTGGTACTaGTGGTGTCAGGTGTGCTGG +
Preference number: 4 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVKREWY*WCQVCW
Trigger: CCAGCACACCTGACACCAGCAGTACCACTCTCTTTT...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAGCCATTGTATGGAGCTaGTGTTTCGGAGTCCCTAAC +
Preference number: 4 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVAIVWS*CFGVPN
Trigger: GTTAGGGACTCCGAAACAGCAGCTCCATACAATGGC...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGATCGTCATCAGTCGCTaGCTTTTTCTTTGGGATAAT +
Preference number: 4 (lower is better)
Translates to: KPQPAICVTKCLESLKTEIVISR*LFLWDN
Trigger: ATTATCCCAAAGAAAAAGGCAGCGACTGATGACGAT...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGTGGCCGAGACTGGATTaGCTGGTGAATGAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRWPRLD*LVNEVL
Trigger: CAGCACCTCATTCACCAGCCAATCCAGTCTCGGCCA...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAATGGCCGAGACTGGATTaGCTGGTGAATGAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQWPRLD*LVNEVL
Trigger: CAGCACCTCATTCACCAGCCAATCCAGTCTCGGCCA...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGCAGGAGACTGCGCTCTaGTGGCTGAGACTGTTGCTA +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRQETAL*WLRLLL
Trigger: TAGCAACAGTCTCAGCCACCAGAGCGCAGTCTCCTG...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAATTTGGAGAGGCCCGATaGCCGGAAATGGGAATCAGG +
Preference number: 4 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQFGEAR*PEMGIR
Trigger: CCTGATTCCCATTTCCGGCCATCGGGCCTCTCCAAA...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGGGTTTCCATGGCCACTaGATTTGGAGAGGCCCGATG +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRGFHGH*IWRGPM
Trigger: CATCGGGCCTCTCCAAATCCAGTGGCCATGGAAACC...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCCATTTCGGGTTTCCATaGCCACTGGATTTGGAGAGG +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPHFGFP*PLDLER
Trigger: CCTCTCCAAATCCAGTGGCCATGGAAACCCGAAATG...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGTGTCCCAATGGGGGCTaGCTGGATTCCCTGTGTACT +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRCPNGG*LDSLCT
Trigger: AGTACACAGGGAATCCAGCCAGCCCCCATTGGGACA...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTGGGGCTGCTGAATaGATTCCTGGGGTGCCAATT +
Preference number: 4 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVIGAAE*IPGVPI
Trigger: AATTGGCACCCCAGGAATCCATTCAGCAGCCCCAAT...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCATTAGCCATTGCTGCTaGCTGAAGCCCCTGAGTGTT +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPISHCC*LKPLSV
Trigger: AACACTCAGGGGCTTCAGCCAGCAGCAATGGCTAAT...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTGGAGCAGCACTGAATaGGTTGCTAATAGGGTTGGC +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPWSSTE*VANRVG
Trigger: GCCAACCCTATTAGCAACCCATTCAGTGCTGCTCCA...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGAGAAGAGCCCTGGGCTaGTGTGTTGGTGCTAGCACT +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRRRALG*CVGAST
Trigger: AGTGCTAGCACCAACACACCAGCCCAGGGCTCTTCT...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGTGGTGGAAAGGGCAATaGCTGGTTGGGATGGAGGAC +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRWWKGQ*LVGMED
Trigger: GTCCTCCATCCCAACCAGCCATTGCCCTTTCCACCA...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGGGTCACTTGGAGGCATaGACAGGTTGCTTGCCAGCA +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRGHLEA*TGCLPA
Trigger: TGCTGGCAAGCAACCTGTCCATGCCTCCAAGTGACC...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTAGGTGGGAGGTCACTTaGAGGCATGGACAGGTTGCT +
Preference number: 4 (lower is better)
Translates to: SVPPDLLPQVNEEKCPVIRWEVT*RHGQVA
Trigger: AGCAACCTGTCCATGCCTCCAAGTGACCTCCCACCT...AATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTATTACCAGGAGACTCTTaGCAGCGGACTTCTCATCGT +
Preference number: 4 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVLPGDS*QRTSHR
Trigger: ACGATGAGAAGTCCGCTGCCAAGAGTCTCCTGGTAA...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACTGGCCTCACTGATTTaGTCCATCACTAGTTTACAC +
Preference number: 4 (lower is better)
Translates to: PEQLVLSALNLHKNPALTLASLI*SITSLH
Trigger: GTGTAAACTAGTGATGGACCAAATCAGTGAGGCCAG...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCAGCAACTGGGATATTTaGAGTGGTCACAGCAGTAGC +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPSNWDI*SGHSSS
Trigger: GCTACTGCTGTGACCACTTCAAATATCCCAGTTGCT...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAATTGGTGCTAGCACTCTaGCTGTGTGTCTGGACCACT +
Preference number: 4 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQLVLAL*LCVWTT
Trigger: AGTGGTCCAGACACACAGTCAGAGTGCTAGCACCAA...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTCGGATTATGGACATCTaGACATTTGTGGTCATAATG +
Preference number: 4 (lower is better)
Translates to: RTDRWILLREMWQFSGCCRIMDI*TFVVIM
Trigger: CATTATGACCACAAATGTGCAGATGTCCATAATCCG...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCCGGATTATGGACATCTaGACATTTGTGGTCATAATG +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGRIMDI*TFVVIM
Trigger: CATTATGACCACAAATGTGCAGATGTCCATAATCCG...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCAGGAAGCGTGTTGGTTaGCAGAATAGGTGCTACTGT +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPRKRVG*QNRCYC
Trigger: ACAGTAGCACCTATTCTGGCAACCAACACGCTTCCT...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGGAAGTGTGTGTGATCTaGTGGGGCACCACCTTAGCA +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITREVCVI*WGTTLA
Trigger: TGCTAAGGTGGTGCCCCAGCAGATCACACACACTTC...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAATCCACTGTCATCAGCTaGATGGGGTTCAGGTGGACT +
Preference number: 4 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQSTVIS*MGFRWT
Trigger: AGTCCACCTGAACCCCATGCAGCTGATGACAGTGGA...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AGAGAGGATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCACTTCTCATCGTCAGTaGTGTTTGTCTCCATCATAT +
Preference number: 4 (lower is better)
Translates to: REDRLSKWILSVQAQLRPTSHRQ*CLSPSY
Trigger: ATATGATGGAGACAAACAGCACTGACGATGAGAAGT...GGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTATCCTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTATCGTCATCAGTCGCTaGCTTTTTCTTTGGGATAAT +
Preference number: 4 (lower is better)
Translates to: RTDRWILLREMWQFSGCCIVISR*LFLWDN
Trigger: ATTATCCCAAAGAAAAAGGCAGCGACTGATGACGAT...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCATCGTCATCAGTCGCTaGCTTTTTCTTTGGGATAAT +
Preference number: 4 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGIVISR*LFLWDN
Trigger: ATTATCCCAAAGAAAAAGGCAGCGACTGATGACGAT...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAATTGTTGCCACGGGAATaGCTGAAGCTTGAGGGATGC +
Preference number: 4 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQLLPRE*LKLEGC
Trigger: GCATCCCTCAAGCTTCAGCCATTCCCGTGGCAACAA...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTGTGTGTGTGATCTGCTaGGGCACCACCTTAGCAACT +
Preference number: 4 (lower is better)
Translates to: SVPPDLLPQVNEEKCPVIVCVIC*GTTLAT
Trigger: AGTTGCTAAGGTGGTGCCCCAGCAGATCACACACAC...AATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGCGGGTAGGCAGAGGGTaGGTAAGTTGGCAAGAAGTA +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRRVGRG*VSWQEV
Trigger: TACTTCTTGCCAACTTACCCACCCTCTGCCTACCCG...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TTGAAAATGACAAGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTGTGATGGTGGAGTTTaGGGCTTGAGCAGAAACTGG +
Preference number: 4 (lower is better)
Translates to: LKMTRTDRWILLREMWQFCDGGV*GLSRNW
Trigger: CCAGTTTCTGCTCAAGCCCCAAACTCCACCATCACA...GAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAATGTACTGATGGGTGCTaGCTGGATCCCCTGGATATG +
Preference number: 4 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQCTDGC*LDPLDM
Trigger: CATATCCAGGGGATCCAGCCAGCACCCATCAGTACA...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTATTTGTGGTCATAATGTaGTGCAGGTTACTGGGATGC +
Preference number: 4 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVFVVIM*CRLLGC
Trigger: GCATCCCAGTAACCTGCATCACATTATGACCACAAA...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCCTAAAGATGGTTTTCTaGGCCATTGTATGGAGCTGC +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPLKMVF*AIVWSC
Trigger: GCAGCTCCATACAATGGCTCAGAAAACCATCTTTAG...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TTGAAAATGACAAGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCACACCAACACCAGTTTaGGCTGTGATGGTGGAGTTT +
Preference number: 4 (lower is better)
Translates to: LKMTRTDRWILLREMWQFTPTPV*AVMVEF
Trigger: AAACTCCACCATCACAGCTCAAACTGGTGTTGGTGT...GAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAACTTCTTCCTTCACTTTaGTCTCAGGAACAGGAGGCC +
Preference number: 4 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQLLPSL*SQEQEA
Trigger: GGCCTCCTGTTCCTGAGATCAAAGTGAAGGAAGAAG...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAATGCAGGTTACTGGGATaGCCCTGTTGTCCACTGATT +
Preference number: 4 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQCRLLG*PCCPLI
Trigger: AATCAGTGGACAACAGGGGCATCCCAGTAACCTGCA...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp GCTCAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAACGGATTATGGACATCTaGACATTTGTGGTCATAATG +
Preference number: 4 (lower is better)
Translates to: AQLRPYRNPPDKYSLWAERIMDI*TFVVIM
Trigger: CATTATGACCACAAATGTGCAGATGTCCATAATCCG...TTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTGAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAGCATCTGTACCTGTaGATAGGGCCTTACCACAAC +
Preference number: 4 (lower is better)
Translates to: SVPPDLLPQVNEEKCPVIQHLYL*IGPYHN
Trigger: GTTGTGGTAAGGCCCTATCCACAGGTACAGATGCTG...AATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGGTCACAGCAGTAGCATaGGATGAATGGGAGGGCATT +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRVTAVA*DEWEGI
Trigger: AATGCCCTCCCATTCATCCCATGCTACTGCTGTGAC...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGTTACCAGGAGACTCTTaGCAGCGGACTTCTCATCGT +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRLPGDS*QRTSHR
Trigger: ACGATGAGAAGTCCGCTGCCAAGAGTCTCCTGGTAA...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCCTGGCCTCACTGATTTaGTCCATCACTAGTTTACAC +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPLASLI*SITSLH
Trigger: GTGTAAACTAGTGATGGACCAAATCAGTGAGGCCAG...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp TCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTGTCCCTAACGCAGGATaGGAAGGTAGTGTGATTCTT +
Preference number: 4 (lower is better)
Translates to: SVPPDLLPQVNEEKCPVIVPNAG*EGSVIL
Trigger: AAGAATCACACTACCTTCTCATCCTGCGTTAGGGAC...AATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR TCA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAAAGTCTCTGGCCTCACTaGTTTGGTCCATCACTAGTT +
Preference number: 4 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQSLWPH*FGPSLV
Trigger: AACTAGTGATGGACCAAATCAGTGAGGCCAGAGACT...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGCAGGTGGACTGTAGATaGTACACCAACACCAGTTTG +
Preference number: 4 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRQVDCR*YTNTSL
Trigger: CAAACTGGTGTTGGTGTAGCATCTACAGTCCACCTG...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CCA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAATTCCGAAAAAGAGAGTaGTACTGCTGGTGTCAGGTG +
Preference number: 4 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQFRKRE*YCWCQV
Trigger: CACCTGACACCAGCAGTACCACTCTCTTTTTCGGAA...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCACTTCTCATCGTCAGTaGTGTTTGTCTCCATCATAT +
Preference number: 4 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPTSHRQ*CLSPSY
Trigger: ATATGATGGAGACAAACAGCACTGACGATGAGAAGT...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR GCA 90 bp TCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTACTTCTCATCGTCAGTaGTGTTTGTCTCCATCATAT +
Preference number: 4 (lower is better)
Translates to: SVPPDLLPQVNEEKCPVITSHRQ*CLSPSY
Trigger: ATATGATGGAGACAAACAGCACTGACGATGAGAAGT...AATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 90 bp AACAGGAGGCCCCAGGACCGTGGAAGGAGTGCCGCCCACTGGGGCTaGCAGCGTTGGTGTGGCAGCAATGGTGGTGATGGGTGGAGTGAC +
Preference number: 5 (lower is better)
Translates to: NRRPQDRGRSAAHWG*QRWCGSNGGDGWSD
Trigger: GTCACTCCACCCATCACCACCATTGCTGCCACACCAACGCTGTCAGCCCCAGTGGGCGGCACTCCTTCCACGGTCCTGGGGCCTCCTGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 90 bp GGCCGGGGAGAAGAGCCCTGGGCTGGTGTGTTGGTGCTAGCACTCTaGCTGTGTGTCTGGACCACTGTGGTTGCCGCTGGAGCAGCACTG +
Preference number: 5 (lower is better)
Translates to: GRGEEPWAGVLVLAL*LCVWTTVVAAGAAL
Trigger: CAGTGCTGCTCCAGCGGCAACCACAGTGGTCCAGACACACAGTCAGAGTGCTAGCACCAACACACCAGCCCAGGGCTCTTCTCCCCGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp GGGCAATGGCTGGTTGGGATGGAGGACTGGCTGCCGCAATCATGCTaGGAATGGTCGGTGGAGGCTGCTGGGCAGTCGGAGGGACAGCAA +
Preference number: 5 (lower is better)
Translates to: GQWLVGMEDWLPQSC*EWSVEAAGQSEGQQ
Trigger: TTGCTGTCCCTCCGACTGCCCAGCAGCCTCCACCGACCATTCCCAGCATGATTGCGGCAGCCAGTCCTCCATCCCAACCAGCCATTGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 90 bp GGAGGACTGGCTGCCGCAATCATGCTGGGAATGGTCGGTGGAGGCTaGTGGGCAGTCGGAGGGACAGCAACGGTAGGCTGTTCGGCATTT +
Preference number: 5 (lower is better)
Translates to: GGLAAAIMLGMVGGG*WAVGGTATVGCSAF
Trigger: AAATGCCGAACAGCCTACCGTTGCTGTCCCTCCGACTGCCCAGCAGCCTCCACCGACCATTCCCAGCATGATTGCGGCAGCCAGTCCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp TTGGGATGGAGGACTGGCTGCCGCAATCATGCTGGGAATGGTCGGTaGAGGCTGCTGGGCAGTCGGAGGGACAGCAACGGTAGGCTGTTC +
Preference number: 5 (lower is better)
Translates to: LGWRTGCRNHAGNGR*RLLGSRRDSNGRLF
Trigger: GAACAGCCTACCGTTGCTGTCCCTCCGACTGCCCAGCAGCCTCCACCGACCATTCCCAGCATGATTGCGGCAGCCAGTCCTCCATCCCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp AGGCACGGCTCCGGGAATGGTGGAAAGGGCAATGGCTGGTTGGGATaGAGGACTGGCTGCCGCAATCATGCTGGGAATGGTCGGTGGAGG +
Preference number: 5 (lower is better)
Translates to: RHGSGNGGKGNGWLG*RTGCRNHAGNGRWR
Trigger: CCTCCACCGACCATTCCCAGCATGATTGCGGCAGCCAGTCCTCCATCCCAACCAGCCATTGCCCTTTCCACCATTCCCGGAGCCGTGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 90 bp ACAGCGGCAGCAGCTGCACCTCGAGGTAAGTGGGAAGCTCCAATGTaGAGTGGGGGCCCGGGAGCGTTGCTGCGGATTATGGACATCTGC +
Preference number: 5 (lower is better)
Translates to: TAAAAAPRGKWEAPM*SGGPGALLRIMDIC
Trigger: GCAGATGTCCATAATCCGCAGCAACGCTCCCGGGCCCCCACTTCACATTGGAGCTTCCCACTTACCTCGAGGTGCAGCTGCTGCCGCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp TGCTGGATAGATAAAGTGGGCCGACTGAGCGTCGAGTCAGCCGCGTaGGCCGCTGTCGTAGTGATGACAGGAGACTGCGCTCTGGTGGCT +
Preference number: 5 (lower is better)
Translates to: CWIDKVGRLSVESAA*AAVVVMTGDCALVA
Trigger: AGCCACCAGAGCGCAGTCTCCTGTCATCACTACGACAGCGGCCCACGCGGCTGACTCGACGCTCAGTCGGCCCACTTTATCTATCCAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp GTGACAGGCACGGCTCCGGGAATGGTGGAAAGGGCAATGGCTGGTTaGGATGGAGGACTGGCTGCCGCAATCATGCTGGGAATGGTCGGT +
Preference number: 5 (lower is better)
Translates to: VTGTAPGMVERAMAG*DGGLAAAIMLGMVG
Trigger: ACCGACCATTCCCAGCATGATTGCGGCAGCCAGTCCTCCATCCCAACCAGCCATTGCCCTTTCCACCATTCCCGGAGCCGTGCCTGTCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 90 bp GGATCCCTGATGTCCCAATGGGGGCTGGCTGGATTCCCTGTGTACTaGTGGGTGCTGGCTGGATCCCCTGGATATGTCGGGCATGTGAGG +
Preference number: 5 (lower is better)
Translates to: GSLMSQWGLAGFPVY*WVLAGSPGYVGHVR
Trigger: CCTCACATGCCCGACATATCCAGGGGATCCAGCCAGCACCCATCAGTACACAGGGAATCCAGCCAGCCCCCATTGGGACATCAGGGATCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 90 bp GTCGAGTCAGCCGCGTGGGCCGCTGTCGTAGTGATGACAGGAGACTaGGCTCTGGTGGCTGAGACTGTTGCTACTACAGCAGGAGGGATT +
Preference number: 5 (lower is better)
Translates to: VESAAWAAVVVMTGD*ALVAETVATTAGGI
Trigger: AATCCCTCCTGCTGTAGTAGCAACAGTCTCAGCCACCAGAGCGCAGTCTCCTGTCATCACTACGACAGCGGCCCACGCGGCTGACTCGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 90 bp GGAGGCACCAGGTGGGAGGTCACTTGGAGGCATGGACAGGTTGCTTaGCAGCAAAGCAAGAGATGGAGACACCGTGTTGGTGGCCAGAGG +
Preference number: 5 (lower is better)
Translates to: GGTRWEVTWRHGQVA*QQSKRWRHRVGGQR
Trigger: CCTCTGGCCACCAACACGGTGTCTCCATCTCTTGCTTTGCTGGCAAGCAACCTGTCCATGCCTCCAAGTGACCTCCCACCTGGTGCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp TGGAGTGACAGGCACGGCTCCGGGAATGGTGGAAAGGGCAATGGCTaGTTGGGATGGAGGACTGGCTGCCGCAATCATGCTGGGAATGGT +
Preference number: 5 (lower is better)
Translates to: WSDRHGSGNGGKGNG*LGWRTGCRNHAGNG
Trigger: ACCATTCCCAGCATGATTGCGGCAGCCAGTCCTCCATCCCAACCAGCCATTGCCCTTTCCACCATTCCCGGAGCCGTGCCTGTCACTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp GGTGGCCAGAGGAGGGACTGTGGAGACAGGCCTGGTGATGTCCACTaGCTCCGCTTCTTCCTTCACTTTGATCTCAGGAACAGGAGGCCC +
Preference number: 5 (lower is better)
Translates to: GGQRRDCGDRPGDVH*LRFFLHFDLRNRRP
Trigger: GGGCCTCCTGTTCCTGAGATCAAAGTGAAGGAAGAAGCGGAGCCAGTGGACATCACCAGGCCTGTCTCCACAGTCCCTCCTCTGGCCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 90 bp GCTCTCCATGGTAACAGTAACCTGCCCGGGAACTTTCGGGGGAAGTaGCATGGTAGAAGGGGGAGCAGGCGCAATGGGACGGCTAGGCAT +
Preference number: 5 (lower is better)
Translates to: ALHGNSNLPGNFRGK*HGRRGSRRNGTARH
Trigger: ATGCCTAGCCGTCCCATTGCGCCTGCTCCCCCTTCTACCATGTCACTTCCCCCGAAAGTTCCCGGGCAGGTTACTGTTACCATGGAGAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 90 bp TTGGGGAGGCACCAGGTGGGAGGTCACTTGGAGGCATGGACAGGTTaGTTGCCAGCAAAGCAAGAGATGGAGACACCGTGTTGGTGGCCA +
Preference number: 5 (lower is better)
Translates to: LGRHQVGGHLEAWTG*LPAKQEMETPCWWP
Trigger: TGGCCACCAACACGGTGTCTCCATCTCTTGCTTTGCTGGCAAGCAACCTGTCCATGCCTCCAAGTGACCTCCCACCTGGTGCCTCCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp CCAATTGGTGCTGGCTGGATCCCTGATGTCCCAATGGGGGCTGGCTaGATTCCCTGTGTACTGATGGGTGCTGGCTGGATCCCCTGGATA +
Preference number: 5 (lower is better)
Translates to: PIGAGWIPDVPMGAG*IPCVLMGAGWIPWI
Trigger: TATCCAGGGGATCCAGCCAGCACCCATCAGTACACAGGGAATCCAGCCAGCCCCCATTGGGACATCAGGGATCCAGCCAGCACCAATTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp CACGTGCTGCTGCTTTCGAGGCTTTTTCCTTGGGGAGGCACCAGGTaGGAGGTCACTTGGAGGCATGGACAGGTTGCTTGCCAGCAAAGC +
Preference number: 5 (lower is better)
Translates to: HVLLLSRLFPWGGTR*EVTWRHGQVACQQS
Trigger: GCTTTGCTGGCAAGCAACCTGTCCATGCCTCCAAGTGACCTCCCACCTGGTGCCTCCCCAAGGAAAAAGCCTCGAAAGCAGCAGCACGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 90 bp GTGGGCCGCTGTCGTAGTGATGACAGGAGACTGCGCTCTGGTGGCTaGGACTGTTGCTACTACAGCAGGAGGGATTGTACTGGAGGTGGT +
Preference number: 5 (lower is better)
Translates to: VGRCRSDDRRLRSGG*DCCYYSRRDCTGGG
Trigger: ACCACCTCCAGTACAATCCCTCCTGCTGTAGTAGCAACAGTCTCAGCCACCAGAGCGCAGTCTCCTGTCATCACTACGACAGCGGCCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 90 bp CGAGACTGTGCAGGACGCTGGATACTAATGGCTGCAGATGGTGGATaGTGGATAGATAAAGTGGGCCGACTGAGCGTCGAGTCAGCCGCG +
Preference number: 5 (lower is better)
Translates to: RDCAGRWILMAADGG*WIDKVGRLSVESAA
Trigger: CGCGGCTGACTCGACGCTCAGTCGGCCCACTTTATCTATCCAGCATCCACCATCTGCAGCCATTAGTATCCAGCGTCCTGCACAGTCTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp GACTGTGCAGGACGCTGGATACTAATGGCTGCAGATGGTGGATGCTaGATAGATAAAGTGGGCCGACTGAGCGTCGAGTCAGCCGCGTGG +
Preference number: 5 (lower is better)
Translates to: DCAGRWILMAADGGC*IDKVGRLSVESAAW
Trigger: CCACGCGGCTGACTCGACGCTCAGTCGGCCCACTTTATCTATCCAGCATCCACCATCTGCAGCCATTAGTATCCAGCGTCCTGCACAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp TGGAGAGGCCCGATGGCCGGAAATGGGAATCAGGCTACTCCTCTCTaGAGGGTAATCAGGCTGGATCCGAGGGGAAGTGTGTGTGATCTG +
Preference number: 5 (lower is better)
Translates to: WRGPMAGNGNQATPL*RVIRLDPRGSVCDL
Trigger: CAGATCACACACACTTCCCCTCGGATCCAGCCTGATTACCCTCCAGAGAGGAGTAGCCTGATTCCCATTTCCGGCCATCGGGCCTCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp GGGTTTCCATGGCCACTGGATTTGGAGAGGCCCGATGGCCGGAAATaGGAATCAGGCTACTCCTCTCTGGAGGGTAATCAGGCTGGATCC +
Preference number: 5 (lower is better)
Translates to: GFPWPLDLERPDGRK*ESGYSSLEGNQAGS
Trigger: GGATCCAGCCTGATTACCCTCCAGAGAGGAGTAGCCTGATTCCCATTTCCGGCCATCGGGCCTCTCCAAATCCAGTGGCCATGGAAACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp GGTGATGGGGGTGTAGGTGTGTGCAGCCAGCGGGTAGGCAGAGGGTaGGTAAGTTGGCAAGAAGTACTGGAACTGAACAGGAACGGAAGG +
Preference number: 5 (lower is better)
Translates to: GDGGVGVCSQRVGRG*VSWQEVLELNRNGR
Trigger: CCTTCCGTTCCTGTTCAGTTCCAGTACTTCTTGCCAACTTACCCACCCTCTGCCTACCCGCTGGCTGCACACACCTACACCCCCATCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp GCTGGCTGGATTCCCTGTGTACTGATGGGTGCTGGCTGGATCCCCTaGATATGTCGGGCATGTGAGGCATCCACTGTCATCAGCTGCATG +
Preference number: 5 (lower is better)
Translates to: AGWIPCVLMGAGWIP*ICRACEASTVISCM
Trigger: CATGCAGCTGATGACAGTGGATGCCTCACATGCCCGACATATCCAGGGGATCCAGCCAGCACCCATCAGTACACAGGGAATCCAGCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp GTCACTTGGAGGCATGGACAGGTTGCTTGCCAGCAAAGCAAGAGATaGAGACACCGTGTTGGTGGCCAGAGGAGGGACTGTGGAGACAGG +
Preference number: 5 (lower is better)
Translates to: VTWRHGQVACQQSKR*RHRVGGQRRDCGDR
Trigger: CCTGTCTCCACAGTCCCTCCTCTGGCCACCAACACGGTGTCTCCATCTCTTGCTTTGCTGGCAAGCAACCTGTCCATGCCTCCAAGTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp CTCCTCTGTCGAGATCACGTGCTGCTGCTTTCGAGGCTTTTTCCTTaGGGAGGCACCAGGTGGGAGGTCACTTGGAGGCATGGACAGGTT +
Preference number: 5 (lower is better)
Translates to: LLCRDHVLLLSRLFP*GGTRWEVTWRHGQV
Trigger: AACCTGTCCATGCCTCCAAGTGACCTCCCACCTGGTGCCTCCCCAAGGAAAAAGCCTCGAAAGCAGCAGCACGTGATCTCGACAGAGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCCCATGGCCACTGGATTaGGAGAGGCCCGATGGCCGG +
Preference number: 5 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGPWPLD*ERPDGR
Trigger: CCGGCCATCGGGCCTCTCCAAATCCAGTGGCCATGG...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 90 bp TGTACTGATGGGTGCTGGCTGGATCCCCTGGATATGTCGGGCATGTaGGGCATCCACTGTCATCAGCTGCATGGGGTTCAGGTGGACTGT +
Preference number: 5 (lower is better)
Translates to: CTDGCWLDPLDMSGM*GIHCHQLHGVQVDC
Trigger: ACAGTCCACCTGAACCCCATGCAGCTGATGACAGTGGATGCCTCACATGCCCGACATATCCAGGGGATCCAGCCAGCACCCATCAGTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 90 bp TGCCCCTGTTGTCCACTGATTGTTGCCACGGGAATGGCTGAAGCTTaGGGGATGCTGCTCTCCATGGTAACAGTAACCTGCCCGGGAACT +
Preference number: 5 (lower is better)
Translates to: CPCCPLIVATGMAEA*GMLLSMVTVTCPGT
Trigger: AGTTCCCGGGCAGGTTACTGTTACCATGGAGAGCAGCATCCCTCAAGCTTCAGCCATTCCCGTGGCAACAATCAGTGGACAACAGGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 90 bp ACTGGGATGCCCCTGTTGTCCACTGATTGTTGCCACGGGAATGGCTaGAGCTTGAGGGATGCTGCTCTCCATGGTAACAGTAACCTGCCC +
Preference number: 5 (lower is better)
Translates to: TGMPLLSTDCCHGNG*SLRDAALHGNSNLP
Trigger: GGGCAGGTTACTGTTACCATGGAGAGCAGCATCCCTCAAGCTTCAGCCATTCCCGTGGCAACAATCAGTGGACAACAGGGGCATCCCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp GGTGTAGGTGTGTGCAGCCAGCGGGTAGGCAGAGGGTGGGTAAGTTaGCAAGAAGTACTGGAACTGAACAGGAACGGAAGGTCTGTTGTC +
Preference number: 5 (lower is better)
Translates to: GVGVCSQRVGRGWVS*QEVLELNRNGRSVV
Trigger: GACAACAGACCTTCCGTTCCTGTTCAGTTCCAGTACTTCTTGCCAACTTACCCACCCTCTGCCTACCCGCTGGCTGCACACACCTACACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp CTTTCGAGGCTTTTTCCTTGGGGAGGCACCAGGTGGGAGGTCACTTaGAGGCATGGACAGGTTGCTTGCCAGCAAAGCAAGAGATGGAGA +
Preference number: 5 (lower is better)
Translates to: LSRLFPWGGTRWEVT*RHGQVACQQSKRWR
Trigger: TCTCCATCTCTTGCTTTGCTGGCAAGCAACCTGTCCATGCCTCCAAGTGACCTCCCACCTGGTGCCTCCCCAAGGAAAAAGCCTCGAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGCAGATCCAGCTGTGGTaGTTGAAGGAAGCGTGTTGG +
Preference number: 5 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGQIQLW*LKEACW
Trigger: CCAACACGCTTCCTTCAACAACCACAGCTGGATCTG...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGTGTACTTGTGGGAGCTaGTGTGTGCGACACAGATCC +
Preference number: 5 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGCTCGS*CVRHRS
Trigger: GGATCTGTGTCGCACACACAAGCTCCCACAAGTACA...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp AGAGAGGATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTTCCTGGGGTGCCAATaGGTGCTGGCTGGATCCCTG +
Preference number: 5 (lower is better)
Translates to: REDRLSKWILSVQAQLRPFLGCQ*VLAGSL
Trigger: CAGGGATCCAGCCAGCACCAATTGGCACCCCAGGAA...GGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTATCCTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCGATGGAGACACCGTGTaGGTGGCCAGAGGAGGGACT +
Preference number: 5 (lower is better)
Translates to: PPDKYSLWAERLKPQPAIDGDTV*VARGGT
Trigger: AGTCCCTCCTCTGGCCACCAACACGGTGTCTCCATC...GATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCGATGGAGACACCGTGTaGGTGGCCAGAGGAGGGACT +
Preference number: 5 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPDGDTV*VARGGT
Trigger: AGTCCCTCCTCTGGCCACCAACACGGTGTCTCCATC...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCCAGGTGGGAGGTCACTaGGAGGCATGGACAGGTTGC +
Preference number: 5 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPQVGGH*EAWTGC
Trigger: GCAACCTGTCCATGCCTCCAAGTGACCTCCCACCTG...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGTTTACCAGGAGACTCTaGGCAGCGGACTTCTCATCG +
Preference number: 5 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGFTRRL*AADFSS
Trigger: CGATGAGAAGTCCGCTGCCAAGAGTCTCCTGGTAAA...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 90 bp GAGGTGCTGTACTGCTGGCTGCGCCGTAGCAGCATTTGGCAGCTGTaGAGTTGGCCTCAGGACTGTAGTTACTTTAGAGCTGGACATCAC +
Preference number: 5 (lower is better)
Translates to: EVLYCWLRRSSIWQL*SWPQDCSYFRAGHH
Trigger: GTGATGTCCAGCTCTAAAGTAACTACAGTCCTGAGGCCAACTTCACAGCTGCCAAATGCTGCTACGGCGCAGCCAGCAGTACAGCACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 90 bp TGTGTTGGTGCTAGCACTCTGACTGTGTGTCTGGACCACTGTGGTTaGCGCTGGAGCAGCACTGAATGGGTTGCTAATAGGGTTGGCTAC +
Preference number: 5 (lower is better)
Translates to: CVGASTLTVCLDHCG*RWSSTEWVANRVGY
Trigger: GTAGCCAACCCTATTAGCAACCCATTCAGTGCTGCTCCAGCGGCAACCACAGTGGTCCAGACACACAGTCAGAGTGCTAGCACCAACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp AACGGAAGGTCTGTTGTCATTTCGGGTTTCCATGGCCACTGGATTTaGAGAGGCCCGATGGCCGGAAATGGGAATCAGGCTACTCCTCTC +
Preference number: 5 (lower is better)
Translates to: NGRSVVISGFHGHWI*RGPMAGNGNQATPL
Trigger: GAGAGGAGTAGCCTGATTCCCATTTCCGGCCATCGGGCCTCTCCAAATCCAGTGGCCATGGAAACCCGAAATGACAACAGACCTTCCGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp TGCAATAGGTGTGCGTCTGGAGGAAGGAGGACTCGGCACGTCAGTCCAGTTCTGGGAACGGAAGGTCTGTaGTCATTTCGGGTTTCCATG +
Preference number: 5 (lower is better)
Translates to: CNRCASGGRRTRHVSPVLGTEGL*SFRVSM
Trigger: CATGGAAACCCGAAATGACAACAGACCTTCCGTTCC...CAGAACTGGACTGACGTGCCGAGTCCTCCTTCCTCCAGACGCACACCTATTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGATTCCTGGGGTGCCAATaGGTGCTGGCTGGATCCCTG +
Preference number: 5 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGFLGCQ*VLAGSL
Trigger: CAGGGATCCAGCCAGCACCAATTGGCACCCCAGGAA...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACAGATGGAGACACCGTGTaGGTGGCCAGAGGAGGGACT +
Preference number: 5 (lower is better)
Translates to: PEQLVLSALNLHKNPALTDGDTV*VARGGT
Trigger: AGTCCCTCCTCTGGCCACCAACACGGTGTCTCCATC...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CAGCTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCAGGTGGGAGGTCACTaGGAGGCATGGACAGGTTGC +
Preference number: 5 (lower is better)
Translates to: QLRPYRNPPDKYSLWAERQVGGH*EAWTGC
Trigger: GCAACCTGTCCATGCCTCCAAGTGACCTCCCACCTG...CCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 90 bp ATCCCCTGGATATGTCGGGCATGTGAGGCATCCACTGTCATCAGCTaGATGGGGTTCAGGTGGACTGTAGATGCTACACCAACACCAGTT +
Preference number: 5 (lower is better)
Translates to: IPWICRACEASTVIS*MGFRWTVDATPTPV
Trigger: AACTGGTGTTGGTGTAGCATCTACAGTCCACCTGAACCCCATGCAGCTGATGACAGTGGATGCCTCACATGCCCGACATATCCAGGGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 90 bp CAGCCTTTACCAGGAGACTCTTGGCAGCGGACTTCTCATCGTCAGTaGTGTTTGTCTCCATCATATCCCCCTCCTCTGTCGAGATCACGT +
Preference number: 5 (lower is better)
Translates to: QPLPGDSWQRTSHRQ*CLSPSYPPPLSRSR
Trigger: ACGTGATCTCGACAGAGGAGGGGGATATGATGGAGACAAACAGCACTGACGATGAGAAGTCCGCTGCCAAGAGTCTCCTGGTAAAGGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp AACAGGAACGGAAGGTCTGTTGTCATTTCGGGTTTCCATGGCCACTaGATTTGGAGAGGCCCGATGGCCGGAAATGGGAATCAGGCTACT +
Preference number: 5 (lower is better)
Translates to: NRNGRSVVISGFHGH*IWRGPMAGNGNQAT
Trigger: AGTAGCCTGATTCCCATTTCCGGCCATCGGGCCTCTCCAAATCCAGTGGCCATGGAAACCCGAAATGACAACAGACCTTCCGTTCCTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp GGAACTGAACAGGAACGGAAGGTCTGTTGTCATTTCGGGTTTCCATaGCCACTGGATTTGGAGAGGCCCGATGGCCGGAAATGGGAATCA +
Preference number: 5 (lower is better)
Translates to: GTEQERKVCCHFGFP*PLDLERPDGRKWES
Trigger: TGATTCCCATTTCCGGCCATCGGGCCTCTCCAAATCCAGTGGCCATGGAAACCCGAAATGACAACAGACCTTCCGTTCCTGTTCAGTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp GGTGCTAGCACTCTGACTGTGTGTCTGGACCACTGTGGTTGCCGCTaGAGCAGCACTGAATGGGTTGCTAATAGGGTTGGCTACAATTGT +
Preference number: 5 (lower is better)
Translates to: GASTLTVCLDHCGCR*SSTEWVANRVGYNC
Trigger: ACAATTGTAGCCAACCCTATTAGCAACCCATTCAGTGCTGCTCCAGCGGCAACCACAGTGGTCCAGACACACAGTCAGAGTGCTAGCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCCTACAGCAGGAGGGATaGTACTGGAGGTGGTCACAG +
Preference number: 5 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPLQQEG*YWRWSQ
Trigger: CTGTGACCACCTCCAGTACAATCCCTCCTGCTGTAG...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
53% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGTACACCAACACCAGTTaGAGCTGTGATGGTGGAGTT +
Preference number: 5 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGYTNTS*SCDGGV
Trigger: AACTCCACCATCACAGCTCAAACTGGTGTTGGTGTA...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGATTCGAGGCTTTTTCCTaGGGGAGGCACCAGGTGGGA +
Preference number: 5 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGFEAFS*GRHQVG
Trigger: TCCCACCTGGTGCCTCCCCAAGGAAAAAGCCTCGAA...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp GAGATGTGGCAGTTCTCTGGGTGCTGTGGCACCACTGTAGAAGGCCAACTTGGGAACTTTGACACCTTCTaGACCGTCCCGTTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: EMWQFSGCCGTTVEGQLGNFDTF*TVPFLL
Trigger: CAACAAGAACGGGACGGTCAAGAAGGTGTCAAAGTT...CCCAAGTTGGCCTTCTACAGTGGTGCCACAGCACCCAGAGAACTGCCACATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 90 bp GGAGCTGCTGTTTCGGAGTCCCTAACGCAGGATGAGAAGGTAGTGTaGTTCTTGTTGTCACATCTCGAGACTGTGCAGGACGCTGGATAC +
Preference number: 5 (lower is better)
Translates to: GAAVSESLTQDEKVV*FLLSHLETVQDAGY
Trigger: GTATCCAGCGTCCTGCACAGTCTCGAGATGTGACAACAAGAATCACACTACCTTCTCATCCTGCGTTAGGGACTCCGAAACAGCAGCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 90 bp GCTAATAGGGTTGGCTACAATTGTAGCTCCATCTGCCAACACCACTaGGGTTTTCCCCTCAGGCTGTGGCTGCTGATTAGCCATTGCTGC +
Preference number: 5 (lower is better)
Translates to: ANRVGYNCSSICQHH*GFPLRLWLLISHCC
Trigger: GCAGCAATGGCTAATCAGCAGCCACAGCCTGAGGGGAAAACCTCAGTGGTGTTGGCAGATGGAGCTACAATTGTAGCCAACCCTATTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025109.8
CDS TCA 90 bp AGACACATGCACTTCGGATTTAGGTTTGGCACCTGCAGGTCTAGGTaGCCCAGAAGCACTCCGCATAGAGCTTTCTACTCGAGGAGTAGC +
Preference number: 5 (lower is better)
Translates to: RHMHFGFRFGTCRSR*PRSTPHRAFYSRSS
Trigger: GCTACTCCTCGAGTAGAAAGCTCTATGCGGAGTGCTTCTGGGTCACCTAGACCTGCAGGTGCCAAACCTAAATCCGAAGTGCATGTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 90 bp TGCTGGGCAGTCGGAGGGACAGCAACGGTAGGCTGTTCGGCATTTTaGTTGGATATGGTCTCCAAGGACACTGTAACTGGAGTGGCTATA +
Preference number: 5 (lower is better)
Translates to: CWAVGGTATVGCSAF*LDMVSKDTVTGVAI
Trigger: TATAGCCACTCCAGTTACAGTGTCCTTGGAGACCATATCCAATCAAAATGCCGAACAGCCTACCGTTGCTGTCCCTCCGACTGCCCAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 90 bp TTGACCGTCCCGTTCTTGTTGAGCAGCTTCAGCACCCGGTCCTTGTaGTCCAGAACCTTAAGCATAGAGTCTCTGGCCTCACTGATTTGG +
Preference number: 5 (lower is better)
Translates to: LTVPFLLSSFSTRSL*SRTLSIESLASLIW
Trigger: CCAAATCAGTGAGGCCAGAGACTCTATGCTTAAGGTTCTGGATCACAAGGACCGGGTGCTGAAGCTGCTCAACAAGAACGGGACGGTCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 90 bp AATAGGGTTGGCTACAATTGTAGCTCCATCTGCCAACACCACTGCTaGGGTTTTCCCCTCAGGCTGTGGCTGCTGATTAGCCATTGCTGC +
Preference number: 5 (lower is better)
Translates to: NRVGYNCSSICQHHC*GFPLRLWLLISHCC
Trigger: GCAGCAATGGCTAATCAGCAGCCACAGCCTGAGGGGAAAACCTCAGCAGTGGTGTTGGCAGATGGAGCTACAATTGTAGCCAACCCTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp ACTGTGTGTCTGGACCACTGTGGTTGCCGCTGGAGCAGCACTGAATaGGTTGCTAATAGGGTTGGCTACAATTGTAGCTCCATCTGCCAA +
Preference number: 5 (lower is better)
Translates to: TVCLDHCGCRWSSTE*VANRVGYNCSSICQ
Trigger: TTGGCAGATGGAGCTACAATTGTAGCCAACCCTATTAGCAACCCATTCAGTGCTGCTCCAGCGGCAACCACAGTGGTCCAGACACACAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACAACTGGGATGCCCCTGTaGTCCACTGATTGTTGCCAC +
Preference number: 5 (lower is better)
Translates to: PEQLVLSALNLHKNPALTTGMPL*STDCCH
Trigger: GTGGCAACAATCAGTGGACAACAGGGGCATCCCAGT...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACTACAGCAGGAGGGATaGTACTGGAGGTGGTCACAG +
Preference number: 5 (lower is better)
Translates to: PEQLVLSALNLHKNPALTLQQEG*YWRWSQ
Trigger: CTGTGACCACCTCCAGTACAATCCCTCCTGCTGTAG...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGATCCAGCTGTGGTTGTaGAAGGAAGCGTGTTGGTTG +
Preference number: 5 (lower is better)
Translates to: KPQPAICVTKCLESLKTEIQLWL*KEACWL
Trigger: CAACCAACACGCTTCCTTCAACAACCACAGCTGGAT...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp TCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCCATGGCCACTGGATTaGGAGAGGCCCGATGGCCGG +
Preference number: 5 (lower is better)
Translates to: SVPPDLLPQVNEEKCPVIPWPLD*ERPDGR
Trigger: CCGGCCATCGGGCCTCTCCAAATCCAGTGGCCATGG...AATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGCCATGGCCACTGGATTaGGAGAGGCCCGATGGCCGG +
Preference number: 5 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRPWPLD*ERPDGR
Trigger: CCGGCCATCGGGCCTCTCCAAATCCAGTGGCCATGG...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp AAACCTCAGCCGGCCATCTGTGTCACCAAGTGTCTGGAGTCCCTGAAAACTGAGCAGAGGGTGGGTAAGTaGGCAAGAAGTACTGGAACT +
Preference number: 5 (lower is better)
Translates to: KPQPAICVTKCLESLKTEQRVGK*ARSTGT
Trigger: AGTTCCAGTACTTCTTGCCAACTTACCCACCCTCTG...CTCAGTTTTCAGGGACTCCAGACACTTGGTGACACAGATGGCCGGCTGAGGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTTCCTGGGGTGCCAATaGGTGCTGGCTGGATCCCTG +
Preference number: 5 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPFLGCQ*VLAGSL
Trigger: CAGGGATCCAGCCAGCACCAATTGGCACCCCAGGAA...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTTTTACCAGGAGACTCTaGGCAGCGGACTTCTCATCG +
Preference number: 5 (lower is better)
Translates to: RTDRWILLREMWQFSGCCFTRRL*AADFSS
Trigger: CGATGAGAAGTCCGCTGCCAAGAGTCTCCTGGTAAA...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCTCTTTGGGAGGAGACTaGCGCTTCTCAGCCTTTACC +
Preference number: 5 (lower is better)
Translates to: KYSLWAERLKPQPAICVTSLGGD*RFSAFT
Trigger: GGTAAAGGCTGAGAAGCGCAAGTCTCCTCCCAAAGA...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp AGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTCTGGGTGCTGTTCTTTGGGAGGAGACTaGCGCTTCTCAGCCTTTACC +
Preference number: 5 (lower is better)
Translates to: RTDRWILLREMWQFSGCCSLGGD*RFSAFT
Trigger: GGTAAAGGCTGAGAAGCGCAAGTCTCCTCCCAAAGA...ACAGCACCCAGAGAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAACCGTCCCGTTCTTGTaGAGCAGCTTCAGCACCCGG +
Preference number: 5 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVTVPFL*SSFSTR
Trigger: CCGGGTGCTGAAGCTGCTCAACAAGAACGGGACGGT...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 90 bp CATACCTCACACCTTCCTCATCAATGTACTCTTTGGGAGGAGACTTaGGCTTCTCAGCCTTTACCAGGAGACTCTTGGCAGCGGACTTCT +
Preference number: 5 (lower is better)
Translates to: HTSHLPHQCTLWEET*ASQPLPGDSWQRTS
Trigger: AGAAGTCCGCTGCCAAGAGTCTCCTGGTAAAGGCTGAGAAGCGCAAGTCTCCTCCCAAAGAGTACATTGATGAGGAAGGTGTGAGGTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp CTTTGGGAGGAGACTTGCGCTTCTCAGCCTTTACCAGGAGACTCTTaGCAGCGGACTTCTCATCGTCAGTGCTGTTTGTCTCCATCATAT +
Preference number: 5 (lower is better)
Translates to: LWEETCASQPLPGDS*QRTSHRQCCLSPSY
Trigger: ATATGATGGAGACAAACAGCACTGACGATGAGAAGTCCGCTGCCAAGAGTCTCCTGGTAAAGGCTGAGAAGCGCAAGTCTCCTCCCAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACATCCAGCTGTGGTTGTaGAAGGAAGCGTGTTGGTTG +
Preference number: 5 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDIQLWL*KEACWL
Trigger: CAACCAACACGCTTCCTTCAACAACCACAGCTGGAT...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGCAGATCCAGCTGTGGTaGTTGAAGGAAGCGTGTTGG +
Preference number: 5 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLQIQLW*LKEACW
Trigger: CCAACACGCTTCCTTCAACAACCACAGCTGGATCTG...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGACAGATCCAGCTGTGGTaGTTGAAGGAAGCGTGTTGG +
Preference number: 5 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGQIQLW*LKEACW
Trigger: CCAACACGCTTCCTTCAACAACCACAGCTGGATCTG...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCGGAACGGAAGGTCTGTaGTCATTTCGGGTTTCCATG +
Preference number: 5 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPGTEGL*SFRVSM
Trigger: CATGGAAACCCGAAATGACAACAGACCTTCCGTTCC...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACGGAACGGAAGGTCTGTaGTCATTTCGGGTTTCCATG +
Preference number: 5 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDGTEGL*SFRVSM
Trigger: CATGGAAACCCGAAATGACAACAGACCTTCCGTTCC...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCCAGAGGGTGGGTAAGTaGGCAAGAAGTACTGGAACT +
Preference number: 5 (lower is better)
Translates to: KYSLWAERLKPQPAICVTQRVGK*ARSTGT
Trigger: AGTTCCAGTACTTCTTGCCAACTTACCCACCCTCTG...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCGCAGCACTGAATGGGTaGCTAATAGGGTTGGCTACA +
Preference number: 5 (lower is better)
Translates to: PPDKYSLWAERLKPQPAIAALNG*LIGLAT
Trigger: TGTAGCCAACCCTATTAGCAACCCATTCAGTGCTGC...GATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCGCAGCACTGAATGGGTaGCTAATAGGGTTGGCTACA +
Preference number: 5 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPAALNG*LIGLAT
Trigger: TGTAGCCAACCCTATTAGCAACCCATTCAGTGCTGC...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCACTTCGGATTTAGGTTaGGCACCTGCAGGTCTAGGT +
Preference number: 5 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGTSDLG*APAGLG
Trigger: ACCTAGACCTGCAGGTGCCAAACCTAAATCCGAAGT...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACTTCGGATTTAGGTTaGGCACCTGCAGGTCTAGGT +
Preference number: 5 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDTSDLG*APAGLG
Trigger: ACCTAGACCTGCAGGTGCCAAACCTAAATCCGAAGT...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTTCGAGGCTTTTTCCTaGGGGAGGCACCAGGTGGGA +
Preference number: 5 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPFEAFS*GRHQVG
Trigger: TCCCACCTGGTGCCTCCCCAAGGAAAAAGCCTCGAA...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp GAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGTCTTTGGGAGGAGACTaGCGCTTCTCAGCCTTTACC +
Preference number: 5 (lower is better)
Translates to: EQLVLSALNLHKNPALTQSLGGD*RFSAFT
Trigger: GGTAAAGGCTGAGAAGCGCAAGTCTCCTCCCAAAGA...CTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp GAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCTTTCTTCTCCTCTTaGACCCGGACGTCACTGTAC +
Preference number: 5 (lower is better)
Translates to: EQLVLSALNLHKNPALTQAFFSS*TRTSLY
Trigger: GTACAGTGACGTCCGGGTCAAAGAGGAGAAGAAAGC...CTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025109.8
ENSMUST00000235017.2
CDS TCA 90 bp GCGTTGCTGCGGATTATGGACATCTGCACATTTGTGGTCATAATGTaGTGCAGGTTACTGGGATGCCCCTGTTGTCCACTGATTGTTGCC +
Preference number: 5 (lower is better)
Translates to: ALLRIMDICTFVVIM*CRLLGCPCCPLIVA
Trigger: GGCAACAATCAGTGGACAACAGGGGCATCCCAGTAACCTGCATCACATTATGACCACAAATGTGCAGATGTCCATAATCCGCAGCAACGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp CCAACATCAGCATCTCGGCCAGCCTCATCATTAACTGTGGCAACTTaGTTTATCAGTCCTGCGGAACCACTGCTTGCAATCTGTGAAGGT +
Preference number: 5 (lower is better)
Translates to: PTSASRPASSLTVAT*FISPAEPLLAICEG
Trigger: ACCTTCACAGATTGCAAGCAGTGGTTCCGCAGGACTGATAAACCAAGTTGCCACAGTTAATGATGAGGCTGGCCGAGATGCTGATGTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000234772.2
ENSMUST00000234846.2
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGAGTTGAAGGAAGCGTGTaGGTTGCCAGAATAGGTGCT +
Preference number: 5 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGVEGSV*VARIGA
Trigger: AGCACCTATTCTGGCAACCAACACGCTTCCTTCAAC...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACAGTTGAAGGAAGCGTGTaGGTTGCCAGAATAGGTGCT +
Preference number: 5 (lower is better)
Translates to: PEQLVLSALNLHKNPALTVEGSV*VARIGA
Trigger: AGCACCTATTCTGGCAACCAACACGCTTCCTTCAAC...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp ATAGATTGTCCAAGTGGATACTTTCAGTCCAGGCTCAGCTCAGGCCCTACAGGACAGAGGGTGGGTAAGTaGGCAAGAAGTACTGGAACT +
Preference number: 5 (lower is better)
Translates to: IDCPSGYFQSRLSSGPTGQRVGK*ARSTGT
Trigger: AGTTCCAGTACTTCTTGCCAACTTACCCACCCTCTG...TCCTGTAGGGCCTGAGCTGAGCCTGGACTGAAAGTATCCACTTGGACAATCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp AAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTGTGTCACCGGGTTGCTAATAGGGTaGGCTACAATTGTAGCTCCA +
Preference number: 5 (lower is better)
Translates to: KYSLWAERLKPQPAICVTGLLIG*ATIVAP
Trigger: TGGAGCTACAATTGTAGCCAACCCTATTAGCAACCC...GGTGACACAGATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp TCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCTCCCCCGGGTTGCTAATAGGGTaGGCTACAATTGTAGCTCCA +
Preference number: 5 (lower is better)
Translates to: SCNSMLHCQSSKALSPSPGLLIG*ATIVAP
Trigger: TGGAGCTACAATTGTAGCCAACCCTATTAGCAACCC...GGGGGAGGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAACAGGTGGGAGGTCACTaGGAGGCATGGACAGGTTGC +
Preference number: 5 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQQVGGH*EAWTGC
Trigger: GCAACCTGTCCATGCCTCCAAGTGACCTCCCACCTG...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp TTGAAAATGACAAGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCTTCGAGGCTTTTTCCTaGGGGAGGCACCAGGTGGGA +
Preference number: 5 (lower is better)
Translates to: LKMTRTDRWILLREMWQFFEAFS*GRHQVG
Trigger: TCCCACCTGGTGCCTCCCCAAGGAAAAAGCCTCGAA...GAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACTCATCAATGTACTCTTaGGGAGGAGACTTGCGCTTC +
Preference number: 5 (lower is better)
Translates to: PRAVSVVCSQPPQESSSDSSMYS*GGDLRF
Trigger: GAAGCGCAAGTCTCCTCCCAAAGAGTACATTGATGA...GTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAAACCTCAGCCGGCCATCTCATCAATGTACTCTTaGGGAGGAGACTTGCGCTTC +
Preference number: 5 (lower is better)
Translates to: PPDKYSLWAERLKPQPAISSMYS*GGDLRF
Trigger: GAAGCGCAAGTCTCCTCCCAAAGAGTACATTGATGA...GATGGCCGGCTGAGGTTTCAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAAACCGTCCCGTTCTTGTaGAGCAGCTTCAGCACCCGG +
Preference number: 5 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQTVPFL*SSFSTR
Trigger: CCGGGTGCTGAAGCTGCTCAACAAGAACGGGACGGT...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp AAGCGTGTTGGTTGCCAGAATAGGTGCTACTGTAGCTGCAGCCACTaGTGTGCCAGTACTAAAGATGGTTTTCTGAGCCATTGTATGGAG +
Preference number: 5 (lower is better)
Translates to: KRVGCQNRCYCSCSH*CASTKDGFLSHCME
Trigger: CTCCATACAATGGCTCAGAAAACCATCTTTAGTACTGGCACACCAGTGGCTGCAGCTACAGTAGCACCTATTCTGGCAACCAACACGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp GCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGGCATTAACTGTGGCAACTaGGTTTATCAGTCCTGCGGA +
Preference number: 5 (lower is better)
Translates to: AVSVVCSQPPQESSSDTGINCGN*VYQSCG
Trigger: TCCGCAGGACTGATAAACCAAGTTGCCACAGTTAAT...GCCTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp TTGAAAATGACAAGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCACTGGGATGCCCCTGTaGTCCACTGATTGTTGCCAC +
Preference number: 5 (lower is better)
Translates to: LKMTRTDRWILLREMWQFTGMPL*STDCCH
Trigger: GTGGCAACAATCAGTGGACAACAGGGGCATCCCAGT...GAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp TTGAAAATGACAAGAACTGATCGCTGGATCCTTTTGCGTGAGATGTGGCAGTTCCTACAGCAGGAGGGATaGTACTGGAGGTGGTCACAG +
Preference number: 5 (lower is better)
Translates to: LKMTRTDRWILLREMWQFLQQEG*YWRWSQ
Trigger: CTGTGACCACCTCCAGTACAATCCCTCCTGCTGTAG...GAACTGCCACATCTCACGCAAAAGGATCCAGCGATCAGTTCTTGTCATTTTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGTGGTTTTCTGAGCCATaGTATGGAGCTGCTGTTTCG +
Preference number: 5 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLWFSEP*YGAAVS
Trigger: CGAAACAGCAGCTCCATACAATGGCTCAGAAAACCA...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTATGTACTTGTGGGAGCTaGTGTGTGCGACACAGATCC +
Preference number: 5 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVCTCGS*CVRHRS
Trigger: GGATCTGTGTCGCACACACAAGCTCCCACAAGTACA...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACATACACCAACACCAGTTaGAGCTGTGATGGTGGAGTT +
Preference number: 5 (lower is better)
Translates to: PEQLVLSALNLHKNPALTYTNTS*SCDGGV
Trigger: AACTCCACCATCACAGCTCAAACTGGTGTTGGTGTA...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTATTTACCAGGAGACTCTaGGCAGCGGACTTCTCATCG +
Preference number: 5 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVFTRRL*AADFSS
Trigger: CGATGAGAAGTCCGCTGCCAAGAGTCTCCTGGTAAA...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCAGAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACATCATCAATGTACTCTTaGGGAGGAGACTTGCGCTTC +
Preference number: 5 (lower is better)
Translates to: PEQLVLSALNLHKNPALTSSMYS*GGDLRF
Trigger: GAAGCGCAAGTCTCCTCCCAAAGAGTACATTGATGA...TGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAGCTTTCTTCTCCTCTTaGACCCGGACGTCACTGTAC +
Preference number: 5 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVAFFSS*TRTSLY
Trigger: GTACAGTGACGTCCGGGTCAAAGAGGAGAAGAAAGC...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025109.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CTCAGGCCCTACAGGAATCCACCAGATAAATACAGTCTATGGGCTGAAAGGCTGAACTTTGACACCTTCTaGACCGTCCCGTTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: LRPYRNPPDKYSLWAERLNFDTF*TVPFLL
Trigger: CAACAAGAACGGGACGGTCAAGAAGGTGTCAAAGTT...CAGCCTTTCAGCCCATAGACTGTATTTATCTGGTGGATTCCTGTAGGGCCTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp GGTAGTGTGATTCTTGTTGTCACATCTCGAGACTGTGCAGGACGCTaGATACTAATGGCTGCAGATGGTGGATGCTGGATAGATAAAGTG +
Preference number: 5 (lower is better)
Translates to: GSVILVVTSRDCAGR*ILMAADGGCWIDKV
Trigger: CACTTTATCTATCCAGCATCCACCATCTGCAGCCATTAGTATCCAGCGTCCTGCACAGTCTCGAGATGTGACAACAAGAATCACACTACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp GAGCAGTTAGTGTTGTCTGCTCTCAACCTCCACAAGAATCCAGCTCTGACACAGATTAACTGTGGCAACTaGGTTTATCAGTCCTGCGGA +
Preference number: 5 (lower is better)
Translates to: EQLVLSALNLHKNPALTQINCGN*VYQSCG
Trigger: TCCGCAGGACTGATAAACCAAGTTGCCACAGTTAAT...CTGTGTCAGAGCTGGATTCTTGTGGAGGTTGAGAGCAGACAACACTAACTGCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp CCTTCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAGTTGAAGGAAGCGTGTaGGTTGCCAGAATAGGTGCT +
Preference number: 5 (lower is better)
Translates to: PSVPPDLLPQVNEEKCPVVEGSV*VARIGA
Trigger: AGCACCTATTCTGGCAACCAACACGCTTCCTTCAAC...TACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCGCAGCACTGAATGGGTaGCTAATAGGGTTGGCTACA +
Preference number: 5 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPAALNG*LIGLAT
Trigger: TGTAGCCAACCCTATTAGCAACCCATTCAGTGCTGC...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp CTGTTCGGCATTTTGATTGGATATGGTCTCCAAGGACACTGTAACTaGAGTGGCTATAGACACATGCACTTCGGATTTAGGTTTGGCACC +
Preference number: 5 (lower is better)
Translates to: LFGILIGYGLQGHCN*SGYRHMHFGFRFGT
Trigger: GGTGCCAAACCTAAATCCGAAGTGCATGTGTCTATAGCCACTCCAGTTACAGTGTCCTTGGAGACCATATCCAATCAAAATGCCGAACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 90 bp GAGTCTCTGGCCTCACTGATTTGGTCCATCACTAGTTTACACCGCTaGATGTTTCCCTGTATCAGCTCATTTATTCGATGTAGATCGTCA +
Preference number: 5 (lower is better)
Translates to: ESLASLIWSITSLHR*MFPCISSFIRCRSS
Trigger: TGACGATCTACATCGAATAAATGAGCTGATACAGGGAAACATGCAGCGGTGTAAACTAGTGATGGACCAAATCAGTGAGGCCAGAGACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 90 bp ACCACCTTAGCAACTGGGATATTTGAAGTGGTCACAGCAGTAGCATaGGATGAATGGGAGGGCATTGTCATGGTAACAATTGTACTTGTG +
Preference number: 5 (lower is better)
Translates to: TTLATGIFEVVTAVA*DEWEGIVMVTIVLV
Trigger: CACAAGTACAATTGTTACCATGACAATGCCCTCCCATTCATCCCATGCTACTGCTGTGACCACTTCAAATATCCCAGTTGCTAAGGTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp AAAGTGTCCTGTAATTCAATGCTCCATTGTCAAAGTAGCAAAGCCCTCTCCCCCATTAACTGTGGCAACTaGGTTTATCAGTCCTGCGGA +
Preference number: 5 (lower is better)
Translates to: KVSCNSMLHCQSSKALSPINCGN*VYQSCG
Trigger: TCCGCAGGACTGATAAACCAAGTTGCCACAGTTAAT...GGGGGAGAGGGCTTTGCTACTTTGACAATGGAGCATTGAATTACAGGACACTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAAATCCAGCTGTGGTTGTaGAAGGAAGCGTGTTGGTTG +
Preference number: 5 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQIQLWL*KEACWL
Trigger: CAACCAACACGCTTCCTTCAACAACCACAGCTGGAT...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp TCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTACTTCGGATTTAGGTTaGGCACCTGCAGGTCTAGGT +
Preference number: 5 (lower is better)
Translates to: SVPPDLLPQVNEEKCPVITSDLG*APAGLG
Trigger: ACCTAGACCTGCAGGTGCCAAACCTAAATCCGAAGT...AATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp TCTGTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTTGGTTTTCTGAGCCATaGTATGGAGCTGCTGTTTCG +
Preference number: 5 (lower is better)
Translates to: SVPPDLLPQVNEEKCPVIWFSEP*YGAAVS
Trigger: CGAAACAGCAGCTCCATACAATGGCTCAGAAAACCA...AATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCACAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAATGGTTTTCTGAGCCATaGTATGGAGCTGCTGTTTCG +
Preference number: 5 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQWFSEP*YGAAVS
Trigger: CGAAACAGCAGCTCCATACAATGGCTCAGAAAACCA...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp GTGCCACCAGATCTGCTTCCTCAAGTGAATGAAGAAAAGTGTCCTGTAATTCAATACACCAACACCAGTTaGAGCTGTGATGGTGGAGTT +
Preference number: 5 (lower is better)
Translates to: VPPDLLPQVNEEKCPVIQYTNTS*SCDGGV
Trigger: AACTCCACCATCACAGCTCAAACTGGTGTTGGTGTA...TTGAATTACAGGACACTTTTCTTCATTCACTTGAGGAAGCAGATCTGGTGGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGGGGTTGCTAATAGGGTaGGCTACAATTGTAGCTCCA +
Preference number: 5 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRGLLIG*ATIVAP
Trigger: TGGAGCTACAATTGTAGCCAACCCTATTAGCAACCC...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS-3UTR CAA 90 bp TCCTTTATTGATGTTTGGAGATGCGTGGTACATATGACTAACAGCATCACACGGAACTTTGACACCTTCTaGACCGTCCCGTTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: SFIDVWRCVVHMTNSITRNFDTF*TVPFLL
Trigger: CAACAAGAACGGGACGGTCAAGAAGGTGTCAAAGTT...CCGTGTGATGCTGTTAGTCATATGTACCACGCATCTCCAAACATCAATAAAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp CTGGTTGGGATGGAGGACTGGCTGCCGCAATCATGCTaGGAATGGTCGGTGGAGGCTGCTGGGCAGTCGGAG +
Preference number: 6 (lower is better)
Translates to: LVGMEDWLPQSC*EWSVEAAGQSE
Trigger: CTCCGACTGCCCAGCAGCCTCCACCGACCATTCCCAGCATGATTGCGGCAGCCAGTCCTCCATCCCAACCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 72 bp CTGCCATCCCATCTGTGGCAGGTTTCTTCCGCAGTATaGTGGGCCGGGGAGAAGAGCCCTGGGCTGGTGTGT +
Preference number: 6 (lower is better)
Translates to: LPSHLWQVSSAV*WAGEKSPGLVC
Trigger: ACACACCAGCCCAGGGCTCTTCTCCCCGGCCCAGCATACTGCGGAAGAAACCTGCCACAGATGGGATGGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp GATAAAGTGGGCCGACTGAGCGTCGAGTCAGCCGCGTaGGCCGCTGTCGTAGTGATGACAGGAGACTGCGCT +
Preference number: 6 (lower is better)
Translates to: DKVGRLSVESAA*AAVVVMTGDCA
Trigger: AGCGCAGTCTCCTGTCATCACTACGACAGCGGCCCACGCGGCTGACTCGACGCTCAGTCGGCCCACTTTATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp CCATCCCATCTGTGGCAGGTTTCTTCCGCAGTATGCTaGGCCGGGGAGAAGAGCCCTGGGCTGGTGTGTTGG +
Preference number: 6 (lower is better)
Translates to: PSHLWQVSSAVC*AGEKSPGLVCW
Trigger: CCAACACACCAGCCCAGGGCTCTTCTCCCCGGCCCAGCATACTGCGGAAGAAACCTGCCACAGATGGGATGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 90 bp AGTGACAGGCACGGCTCCGGGAATGGTGGAAAGGGCAATGGCTGGTaGGGATGGAGGACTGGCTGCCGCAATCATGCTGGGAATGGTCGG +
Preference number: 6 (lower is better)
Translates to: SDRHGSGNGGKGNGW*GWRTGCRNHAGNGR
Trigger: CCGACCATTCCCAGCATGATTGCGGCAGCCAGTCCTCCATCCCAACCAGCCATTGCCCTTTCCACCATTCCCGGAGCCGTGCCTGTCACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 72 bp GCAGCTGCACCTCGAGGTAAGTGGGAAGCTCCAATGTaGAGTGGGGGCCCGGGAGCGTTGCTGCGGATTATG +
Preference number: 6 (lower is better)
Translates to: AAAPRGKWEAPM*SGGPGALLRIM
Trigger: CATAATCCGCAGCAACGCTCCCGGGCCCCCACTTCACATTGGAGCTTCCCACTTACCTCGAGGTGCAGCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 72 bp GGAAAGGGCAATGGCTGGTTGGGATGGAGGACTGGCTaGCGCAATCATGCTGGGAATGGTCGGTGGAGGCTG +
Preference number: 6 (lower is better)
Translates to: GKGNGWLGWRTG*RNHAGNGRWRL
Trigger: CAGCCTCCACCGACCATTCCCAGCATGATTGCGGCAGCCAGTCCTCCATCCCAACCAGCCATTGCCCTTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp CAGCATCTGTACCTGTGGATAGGGCCTTACCACAACTaGCTCCTGCTTCTCTTCCCGGGGCGGCAGGGAGCT +
Preference number: 6 (lower is better)
Translates to: QHLYLWIGPYHN*LLLLFPGRQGA
Trigger: AGCTCCCTGCCGCCCCGGGAAGAGAAGCAGGAGCCAGTTGTGGTAAGGCCCTATCCACAGGTACAGATGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000234846.2
ENSMUST00000235017.2
CDS CCA 72 bp GCTGGCTGGATCCCTGATGTCCCAATGGGGGCTGGCTaGATTCCCTGTGTACTGATGGGTGCTGGCTGGATC +
Preference number: 6 (lower is better)
Translates to: AGWIPDVPMGAG*IPCVLMGAGWI
Trigger: GATCCAGCCAGCACCCATCAGTACACAGGGAATCCAGCCAGCCCCCATTGGGACATCAGGGATCCAGCCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp GAGGGAGGAGAGTTTTCCGGACTGCCATCCCATCTGTaGCAGGTTTCTTCCGCAGTATGCTGGGCCGGGGAG +
Preference number: 6 (lower is better)
Translates to: EGGEFSGLPSHL*QVSSAVCWAGE
Trigger: CTCCCCGGCCCAGCATACTGCGGAAGAAACCTGCCACAGATGGGATGGCAGTCCGGAAAACTCTCCTCCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 72 bp GGTAACAGTAACCTGCCCGGGAACTTTCGGGGGAAGTaGCATGGTAGAAGGGGGAGCAGGCGCAATGGGACG +
Preference number: 6 (lower is better)
Translates to: GNSNLPGNFRGK*HGRRGSRRNGT
Trigger: CGTCCCATTGCGCCTGCTCCCCCTTCTACCATGTCACTTCCCCCGAAAGTTCCCGGGCAGGTTACTGTTACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 72 bp GGGTGCTGGCTGGATCCCCTGGATATGTCGGGCATGTaGGGCATCCACTGTCATCAGCTGCATGGGGTTCAG +
Preference number: 6 (lower is better)
Translates to: GCWLDPLDMSGM*GIHCHQLHGVQ
Trigger: CTGAACCCCATGCAGCTGATGACAGTGGATGCCTCACATGCCCGACATATCCAGGGGATCCAGCCAGCACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 72 bp ATGTCCCAATGGGGGCTGGCTGGATTCCCTGTGTACTaGTGGGTGCTGGCTGGATCCCCTGGATATGTCGGG +
Preference number: 6 (lower is better)
Translates to: MSQWGLAGFPVY*WVLAGSPGYVG
Trigger: CCCGACATATCCAGGGGATCCAGCCAGCACCCATCAGTACACAGGGAATCCAGCCAGCCCCCATTGGGACAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 72 bp GAAGAGCCCTGGGCTGGTGTGTTGGTGCTAGCACTCTaGCTGTGTGTCTGGACCACTGTGGTTGCCGCTGGA +
Preference number: 6 (lower is better)
Translates to: EEPWAGVLVLAL*LCVWTTVVAAG
Trigger: TCCAGCGGCAACCACAGTGGTCCAGACACACAGTCAGAGTGCTAGCACCAACACACCAGCCCAGGGCTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp GCTGGCTGGATTCCCTGTGTACTGATGGGTGCTGGCTaGATCCCCTGGATATGTCGGGCATGTGAGGCATCC +
Preference number: 6 (lower is better)
Translates to: AGWIPCVLMGAG*IPWICRACEAS
Trigger: GGATGCCTCACATGCCCGACATATCCAGGGGATCCAGCCAGCACCCATCAGTACACAGGGAATCCAGCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp TGGTGGAAAGGGCAATGGCTGGTTGGGATGGAGGACTaGCTGCCGCAATCATGCTGGGAATGGTCGGTGGAG +
Preference number: 6 (lower is better)
Translates to: WWKGQWLVGMED*LPQSCWEWSVE
Trigger: CTCCACCGACCATTCCCAGCATGATTGCGGCAGCCAGTCCTCCATCCCAACCAGCCATTGCCCTTTCCACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp TGCTTGCCAGCAAAGCAAGAGATGGAGACACCGTGTTaGTGGCCAGAGGAGGGACTGTGGAGACAGGCCTGG +
Preference number: 6 (lower is better)
Translates to: CLPAKQEMETPC*WPEEGLWRQAW
Trigger: CCAGGCCTGTCTCCACAGTCCCTCCTCTGGCCACCAACACGGTGTCTCCATCTCTTGCTTTGCTGGCAAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 90 bp ACTGCGCTCTGGTGGCTGAGACTGTTGCTACTACAGCAGGAGGGATaGTACTGGAGGTGGTCACAGGTGGCCGAGACTGGATTGGCTGGT +
Preference number: 6 (lower is better)
Translates to: TALWWLRLLLLQQEG*YWRWSQVAETGLAG
Trigger: ACCAGCCAATCCAGTCTCGGCCACCTGTGACCACCTCCAGTACAATCCCTCCTGCTGTAGTAGCAACAGTCTCAGCCACCAGAGCGCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 90 bp ATGGACAGGTTGCTTGCCAGCAAAGCAAGAGATGGAGACACCGTGTaGGTGGCCAGAGGAGGGACTGTGGAGACAGGCCTGGTGATGTCC +
Preference number: 6 (lower is better)
Translates to: MDRLLASKARDGDTV*VARGGTVETGLVMS
Trigger: GGACATCACCAGGCCTGTCTCCACAGTCCCTCCTCTGGCCACCAACACGGTGTCTCCATCTCTTGCTTTGCTGGCAAGCAACCTGTCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp GGCGACAGCATGGTGTGCAGGCAGCATCTGTACCTGTaGATAGGGCCTTACCACAACTGGCTCCTGCTTCTC +
Preference number: 6 (lower is better)
Translates to: GDSMVCRQHLYL*IGPYHNWLLLL
Trigger: GAGAAGCAGGAGCCAGTTGTGGTAAGGCCCTATCCACAGGTACAGATGCTGCCTGCACACCATGCTGTCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000234846.2
ENSMUST00000235017.2
CDS CCA 72 bp CCGATGGCCGGAAATGGGAATCAGGCTACTCCTCTCTaGAGGGTAATCAGGCTGGATCCGAGGGGAAGTGTG +
Preference number: 6 (lower is better)
Translates to: PMAGNGNQATPL*RVIRLDPRGSV
Trigger: CACACTTCCCCTCGGATCCAGCCTGATTACCCTCCAGAGAGGAGTAGCCTGATTCCCATTTCCGGCCATCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp TCCGGGAATGGTGGAAAGGGCAATGGCTGGTTGGGATaGAGGACTGGCTGCCGCAATCATGCTGGGAATGGT +
Preference number: 6 (lower is better)
Translates to: SGNGGKGNGWLG*RTGCRNHAGNG
Trigger: ACCATTCCCAGCATGATTGCGGCAGCCAGTCCTCCATCCCAACCAGCCATTGCCCTTTCCACCATTCCCGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp TTGGGGAGGCACCAGGTGGGAGGTCACTTGGAGGCATaGACAGGTTGCTTGCCAGCAAAGCAAGAGATGGAG +
Preference number: 6 (lower is better)
Translates to: LGRHQVGGHLEA*TGCLPAKQEME
Trigger: CTCCATCTCTTGCTTTGCTGGCAAGCAACCTGTCCATGCCTCCAAGTGACCTCCCACCTGGTGCCTCCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp CGAGATCACGTGCTGCTGCTTTCGAGGCTTTTTCCTTaGGGAGGCACCAGGTGGGAGGTCACTTGGAGGCAT +
Preference number: 6 (lower is better)
Translates to: RDHVLLLSRLFP*GGTRWEVTWRH
Trigger: ATGCCTCCAAGTGACCTCCCACCTGGTGCCTCCCCAAGGAAAAAGCCTCGAAAGCAGCAGCACGTGATCTCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 90 bp GCTTTCGAGGCTTTTTCCTTGGGGAGGCACCAGGTGGGAGGTCACTaGGAGGCATGGACAGGTTGCTTGCCAGCAAAGCAAGAGATGGAG +
Preference number: 6 (lower is better)
Translates to: AFEAFSLGRHQVGGH*EAWTGCLPAKQEME
Trigger: CTCCATCTCTTGCTTTGCTGGCAAGCAACCTGTCCATGCCTCCAAGTGACCTCCCACCTGGTGCCTCCCCAAGGAAAAAGCCTCGAAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 72 bp GTTTATCAGTCCTGCGGAACCACTGCTTGCAATCTGTaGAGGTGGCTGGCTAAGCCCAGGGGAAGGGGTTCC +
Preference number: 6 (lower is better)
Translates to: VYQSCGTTACNL*RWLAKPRGRGS
Trigger: GGAACCCCTTCCCCTGGGCTTAGCCAGCCACCTTCACAGATTGCAAGCAGTGGTTCCGCAGGACTGATAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000234772.2
ENSMUST00000234846.2
ENSMUST00000235017.2
CDS GCA 72 bp GGGAAGCTCCAATGTGAAGTGGGGGCCCGGGAGCGTTaGTGCGGATTATGGACATCTGCACATTTGTGGTCA +
Preference number: 6 (lower is better)
Translates to: GKLQCEVGARER*CGLWTSAHLWS
Trigger: TGACCACAAATGTGCAGATGTCCATAATCCGCAGCAACGCTCCCGGGCCCCCACTTCACATTGGAGCTTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp TGGCCACTGGATTTGGAGAGGCCCGATGGCCGGAAATaGGAATCAGGCTACTCCTCTCTGGAGGGTAATCAG +
Preference number: 6 (lower is better)
Translates to: WPLDLERPDGRK*ESGYSSLEGNQ
Trigger: CTGATTACCCTCCAGAGAGGAGTAGCCTGATTCCCATTTCCGGCCATCGGGCCTCTCCAAATCCAGTGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp GTGTGCAGCCAGCGGGTAGGCAGAGGGTGGGTAAGTTaGCAAGAAGTACTGGAACTGAACAGGAACGGAAGG +
Preference number: 6 (lower is better)
Translates to: VCSQRVGRGWVS*QEVLELNRNGR
Trigger: CCTTCCGTTCCTGTTCAGTTCCAGTACTTCTTGCCAACTTACCCACCCTCTGCCTACCCGCTGGCTGCACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp GGTGTAGGTGTGTGCAGCCAGCGGGTAGGCAGAGGGTaGGTAAGTTGGCAAGAAGTACTGGAACTGAACAGG +
Preference number: 6 (lower is better)
Translates to: GVGVCSQRVGRG*VSWQEVLELNR
Trigger: CCTGTTCAGTTCCAGTACTTCTTGCCAACTTACCCACCCTCTGCCTACCCGCTGGCTGCACACACCTACACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp AGGCATGGACAGGTTGCTTGCCAGCAAAGCAAGAGATaGAGACACCGTGTTGGTGGCCAGAGGAGGGACTGT +
Preference number: 6 (lower is better)
Translates to: RHGQVACQQSKR*RHRVGGQRRDC
Trigger: ACAGTCCCTCCTCTGGCCACCAACACGGTGTCTCCATCTCTTGCTTTGCTGGCAAGCAACCTGTCCATGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 72 bp TGGTGGCTGAGACTGTTGCTACTACAGCAGGAGGGATaGTACTGGAGGTGGTCACAGGTGGCCGAGACTGGA +
Preference number: 6 (lower is better)
Translates to: WWLRLLLLQQEG*YWRWSQVAETG
Trigger: TCCAGTCTCGGCCACCTGTGACCACCTCCAGTACAATCCCTCCTGCTGTAGTAGCAACAGTCTCAGCCACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 72 bp AGATTTGTCAGCTGTAGTAACTGGGCAGCACAGAGGTaGACTTTCCAGCCCTGGGCACGGCAGGACACTCCT +
Preference number: 6 (lower is better)
Translates to: RFVSCSNWAAQR*TFQPWARQDTP
Trigger: AGGAGTGTCCTGCCGTGCCCAGGGCTGGAAAGTTCACCTCTGTGCTGCCCAGTTACTACAGCTGACAAATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 72 bp GCAGGACGCTGGATACTAATGGCTGCAGATGGTGGATaGTGGATAGATAAAGTGGGCCGACTGAGCGTCGAG +
Preference number: 6 (lower is better)
Translates to: AGRWILMAADGG*WIDKVGRLSVE
Trigger: CTCGACGCTCAGTCGGCCCACTTTATCTATCCAGCATCCACCATCTGCAGCCATTAGTATCCAGCGTCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 72 bp GCTAGCACTCTGACTGTGTGTCTGGACCACTGTGGTTaGCGCTGGAGCAGCACTGAATGGGTTGCTAATAGG +
Preference number: 6 (lower is better)
Translates to: ASTLTVCLDHCG*RWSSTEWVANR
Trigger: CCTATTAGCAACCCATTCAGTGCTGCTCCAGCGGCAACCACAGTGGTCCAGACACACAGTCAGAGTGCTAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 72 bp CCAGGAGACTCTTGGCAGCGGACTTCTCATCGTCAGTaGTGTTTGTCTCCATCATATCCCCCTCCTCTGTCG +
Preference number: 6 (lower is better)
Translates to: PGDSWQRTSHRQ*CLSPSYPPPLS
Trigger: CGACAGAGGAGGGGGATATGATGGAGACAAACAGCACTGACGATGAGAAGTCCGCTGCCAAGAGTCTCCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp CTGTTGCTACTACAGCAGGAGGGATTGTACTGGAGGTaGTCACAGGTGGCCGAGACTGGATTGGCTGGTGAA +
Preference number: 6 (lower is better)
Translates to: LLLLQQEGLYWR*SQVAETGLAGE
Trigger: TTCACCAGCCAATCCAGTCTCGGCCACCTGTGACCACCTCCAGTACAATCCCTCCTGCTGTAGTAGCAACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp CTGAGACTGTTGCTACTACAGCAGGAGGGATTGTACTaGAGGTGGTCACAGGTGGCCGAGACTGGATTGGCT +
Preference number: 6 (lower is better)
Translates to: LRLLLLQQEGLY*RWSQVAETGLA
Trigger: AGCCAATCCAGTCTCGGCCACCTGTGACCACCTCCAGTACAATCCCTCCTGCTGTAGTAGCAACAGTCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp CAGGAACGGAAGGTCTGTTGTCATTTCGGGTTTCCATaGCCACTGGATTTGGAGAGGCCCGATGGCCGGAAA +
Preference number: 6 (lower is better)
Translates to: QERKVCCHFGFP*PLDLERPDGRK
Trigger: TTTCCGGCCATCGGGCCTCTCCAAATCCAGTGGCCATGGAAACCCGAAATGACAACAGACCTTCCGTTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp ATTCCCTGTGTACTGATGGGTGCTGGCTGGATCCCCTaGATATGTCGGGCATGTGAGGCATCCACTGTCATC +
Preference number: 6 (lower is better)
Translates to: IPCVLMGAGWIP*ICRACEASTVI
Trigger: GATGACAGTGGATGCCTCACATGCCCGACATATCCAGGGGATCCAGCCAGCACCCATCAGTACACAGGGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp ACTCTGACTGTGTGTCTGGACCACTGTGGTTGCCGCTaGAGCAGCACTGAATGGGTTGCTAATAGGGTTGGC +
Preference number: 6 (lower is better)
Translates to: TLTVCLDHCGCR*SSTEWVANRVG
Trigger: GCCAACCCTATTAGCAACCCATTCAGTGCTGCTCCAGCGGCAACCACAGTGGTCCAGACACACAGTCAGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp AGGAGGGACTGTGGAGACAGGCCTGGTGATGTCCACTaGCTCCGCTTCTTCCTTCACTTTGATCTCAGGAAC +
Preference number: 6 (lower is better)
Translates to: RRDCGDRPGDVH*LRFFLHFDLRN
Trigger: GTTCCTGAGATCAAAGTGAAGGAAGAAGCGGAGCCAGTGGACATCACCAGGCCTGTCTCCACAGTCCCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 72 bp GTCTGTTGTCATTTCGGGTTTCCATGGCCACTGGATTaGGAGAGGCCCGATGGCCGGAAATGGGAATCAGGC +
Preference number: 6 (lower is better)
Translates to: VCCHFGFPWPLD*ERPDGRKWESG
Trigger: GCCTGATTCCCATTTCCGGCCATCGGGCCTCTCCAAATCCAGTGGCCATGGAAACCCGAAATGACAACAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 90 bp GAACGGAAGGTCTGTTGTCATTTCGGGTTTCCATGGCCACTGGATTaGGAGAGGCCCGATGGCCGGAAATGGGAATCAGGCTACTCCTCT +
Preference number: 6 (lower is better)
Translates to: ERKVCCHFGFPWPLD*ERPDGRKWESGYSS
Trigger: AGAGGAGTAGCCTGATTCCCATTTCCGGCCATCGGGCCTCTCCAAATCCAGTGGCCATGGAAACCCGAAATGACAACAGACCTTCCGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 72 bp CCCCTGTTGTCCACTGATTGTTGCCACGGGAATGGCTaGAGCTTGAGGGATGCTGCTCTCCATGGTAACAGT +
Preference number: 6 (lower is better)
Translates to: PLLSTDCCHGNG*SLRDAALHGNS
Trigger: ACTGTTACCATGGAGAGCAGCATCCCTCAAGCTTCAGCCATTCCCGTGGCAACAATCAGTGGACAACAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 72 bp GGCTACAATTGTAGCTCCATCTGCCAACACCACTGCTaGGGTTTTCCCCTCAGGCTGTGGCTGCTGATTAGC +
Preference number: 6 (lower is better)
Translates to: GYNCSSICQHHC*GFPLRLWLLIS
Trigger: GCTAATCAGCAGCCACAGCCTGAGGGGAAAACCTCAGCAGTGGTGTTGGCAGATGGAGCTACAATTGTAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp GGACGCTGGATACTAATGGCTGCAGATGGTGGATGCTaGATAGATAAAGTGGGCCGACTGAGCGTCGAGTCA +
Preference number: 6 (lower is better)
Translates to: GRWILMAADGGC*IDKVGRLSVES
Trigger: TGACTCGACGCTCAGTCGGCCCACTTTATCTATCCAGCATCCACCATCTGCAGCCATTAGTATCCAGCGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp TCAGGCTGGATCCGAGGGGAAGTGTGTGTGATCTGCTaGGGCACCACCTTAGCAACTGGGATATTTGAAGTG +
Preference number: 6 (lower is better)
Translates to: SGWIRGEVCVIC*GTTLATGIFEV
Trigger: CACTTCAAATATCCCAGTTGCTAAGGTGGTGCCCCAGCAGATCACACACACTTCCCCTCGGATCCAGCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp TCTGTTGTCATTTCGGGTTTCCATGGCCACTGGATTTaGAGAGGCCCGATGGCCGGAAATGGGAATCAGGCT +
Preference number: 6 (lower is better)
Translates to: SVVISGFHGHWI*RGPMAGNGNQA
Trigger: AGCCTGATTCCCATTTCCGGCCATCGGGCCTCTCCAAATCCAGTGGCCATGGAAACCCGAAATGACAACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp GGAAGGTCTGTTGTCATTTCGGGTTTCCATGGCCACTaGATTTGGAGAGGCCCGATGGCCGGAAATGGGAAT +
Preference number: 6 (lower is better)
Translates to: GRSVVISGFHGH*IWRGPMAGNGN
Trigger: ATTCCCATTTCCGGCCATCGGGCCTCTCCAAATCCAGTGGCCATGGAAACCCGAAATGACAACAGACCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 72 bp GGAGACTTGCGCTTCTCAGCCTTTACCAGGAGACTCTaGGCAGCGGACTTCTCATCGTCAGTGCTGTTTGTC +
Preference number: 6 (lower is better)
Translates to: GDLRFSAFTRRL*AADFSSSVLFV
Trigger: GACAAACAGCACTGACGATGAGAAGTCCGCTGCCAAGAGTCTCCTGGTAAAGGCTGAGAAGCGCAAGTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 90 bp TGTGTGTGCGACACAGATCCAGCTGTGGTTGTTGAAGGAAGCGTGTaGGTTGCCAGAATAGGTGCTACTGTAGCTGCAGCCACTGGTGTG +
Preference number: 6 (lower is better)
Translates to: CVCDTDPAVVVEGSV*VARIGATVAAATGV
Trigger: CACACCAGTGGCTGCAGCTACAGTAGCACCTATTCTGGCAACCAACACGCTTCCTTCAACAACCACAGCTGGATCTGTGTCGCACACACA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 90 bp TGTGTCTGGACCACTGTGGTTGCCGCTGGAGCAGCACTGAATGGGTaGCTAATAGGGTTGGCTACAATTGTAGCTCCATCTGCCAACACC +
Preference number: 6 (lower is better)
Translates to: CVWTTVVAAGAALNG*LIGLATIVAPSANT
Trigger: GGTGTTGGCAGATGGAGCTACAATTGTAGCCAACCCTATTAGCAACCCATTCAGTGCTGCTCCAGCGGCAACCACAGTGGTCCAGACACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 90 bp CTGCTGGGCAGTCGGAGGGACAGCAACGGTAGGCTGTTCGGCATTTaGATTGGATATGGTCTCCAAGGACACTGTAACTGGAGTGGCTAT +
Preference number: 6 (lower is better)
Translates to: LLGSRRDSNGRLFGI*IGYGLQGHCNWSGY
Trigger: ATAGCCACTCCAGTTACAGTGTCCTTGGAGACCATATCCAATCAAAATGCCGAACAGCCTACCGTTGCTGTCCCTCCGACTGCCCAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 72 bp TGTCCACTGATTGTTGCCACGGGAATGGCTGAAGCTTaGGGGATGCTGCTCTCCATGGTAACAGTAACCTGC +
Preference number: 6 (lower is better)
Translates to: CPLIVATGMAEA*GMLLSMVTVTC
Trigger: GCAGGTTACTGTTACCATGGAGAGCAGCATCCCTCAAGCTTCAGCCATTCCCGTGGCAACAATCAGTGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 72 bp TACTGCTGGCTGCGCCGTAGCAGCATTTGGCAGCTGTaGAGTTGGCCTCAGGACTGTAGTTACTTTAGAGCT +
Preference number: 6 (lower is better)
Translates to: YCWLRRSSIWQL*SWPQDCSYFRA
Trigger: AGCTCTAAAGTAACTACAGTCCTGAGGCCAACTTCACAGCTGCCAAATGCTGCTACGGCGCAGCCAGCAGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 72 bp GTTGGCTACAATTGTAGCTCCATCTGCCAACACCACTaGGGTTTTCCCCTCAGGCTGTGGCTGCTGATTAGC +
Preference number: 6 (lower is better)
Translates to: VGYNCSSICQHH*GFPLRLWLLIS
Trigger: GCTAATCAGCAGCCACAGCCTGAGGGGAAAACCTCAGTGGTGTTGGCAGATGGAGCTACAATTGTAGCCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025109.8
CDS TCA 72 bp CACTTCGGATTTAGGTTTGGCACCTGCAGGTCTAGGTaGCCCAGAAGCACTCCGCATAGAGCTTTCTACTCG +
Preference number: 6 (lower is better)
Translates to: HFGFRFGTCRSR*PRSTPHRAFYS
Trigger: CGAGTAGAAAGCTCTATGCGGAGTGCTTCTGGGTCACCTAGACCTGCAGGTGCCAAACCTAAATCCGAAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 72 bp CCGTTCTTGTTGAGCAGCTTCAGCACCCGGTCCTTGTaGTCCAGAACCTTAAGCATAGAGTCTCTGGCCTCA +
Preference number: 6 (lower is better)
Translates to: PFLLSSFSTRSL*SRTLSIESLAS
Trigger: TGAGGCCAGAGACTCTATGCTTAAGGTTCTGGATCACAAGGACCGGGTGCTGAAGCTGCTCAACAAGAACGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp GAGACTTGCGCTTCTCAGCCTTTACCAGGAGACTCTTaGCAGCGGACTTCTCATCGTCAGTGCTGTTTGTCT +
Preference number: 6 (lower is better)
Translates to: ETCASQPLPGDS*QRTSHRQCCLS
Trigger: AGACAAACAGCACTGACGATGAGAAGTCCGCTGCCAAGAGTCTCCTGGTAAAGGCTGAGAAGCGCAAGTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 72 bp GACACAGATCCAGCTGTGGTTGTTGAAGGAAGCGTGTaGGTTGCCAGAATAGGTGCTACTGTAGCTGCAGCC +
Preference number: 6 (lower is better)
Translates to: DTDPAVVVEGSV*VARIGATVAAA
Trigger: GGCTGCAGCTACAGTAGCACCTATTCTGGCAACCAACACGCTTCCTTCAACAACCACAGCTGGATCTGTGTC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 72 bp AACACCAGTTTGAGCTGTGATGGTGGAGTTTGGGGCTaGAGCAGAAACTGGGTACTGCCGGATAGTGGACAC +
Preference number: 6 (lower is better)
Translates to: NTSLSCDGGVWG*SRNWVLPDSGH
Trigger: GTGTCCACTATCCGGCAGTACCCAGTTTCTGCTCAAGCCCCAAACTCCACCATCACAGCTCAAACTGGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 72 bp GCCGCTGGAGCAGCACTGAATGGGTTGCTAATAGGGTaGGCTACAATTGTAGCTCCATCTGCCAACACCACT +
Preference number: 6 (lower is better)
Translates to: AAGAALNGLLIG*ATIVAPSANTT
Trigger: AGTGGTGTTGGCAGATGGAGCTACAATTGTAGCCAACCCTATTAGCAACCCATTCAGTGCTGCTCCAGCGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 72 bp GGAGTGGCTATAGACACATGCACTTCGGATTTAGGTTaGGCACCTGCAGGTCTAGGTGACCCAGAAGCACTC +
Preference number: 6 (lower is better)
Translates to: GVAIDTCTSDLG*APAGLGDPEAL
Trigger: GAGTGCTTCTGGGTCACCTAGACCTGCAGGTGCCAAACCTAAATCCGAAGTGCATGTGTCTATAGCCACTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 90 bp CTGCATGGGGTTCAGGTGGACTGTAGATGCTACACCAACACCAGTTaGAGCTGTGATGGTGGAGTTTGGGGCTTGAGCAGAAACTGGGTA +
Preference number: 6 (lower is better)
Translates to: LHGVQVDCRCYTNTS*SCDGGVWGLSRNWV
Trigger: TACCCAGTTTCTGCTCAAGCCCCAAACTCCACCATCACAGCTCAAACTGGTGTTGGTGTAGCATCTACAGTCCACCTGAACCCCATGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 90 bp ACTGTGGTTGCCGCTGGAGCAGCACTGAATGGGTTGCTAATAGGGTaGGCTACAATTGTAGCTCCATCTGCCAACACCACTGCTGAGGTT +
Preference number: 6 (lower is better)
Translates to: TVVAAGAALNGLLIG*ATIVAPSANTTAEV
Trigger: AACCTCAGCAGTGGTGTTGGCAGATGGAGCTACAATTGTAGCCAACCCTATTAGCAACCCATTCAGTGCTGCTCCAGCGGCAACCACAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 90 bp ACTGTGGTTGCCGCTGGAGCAGCACTGAATGGGTTGCTAATAGGGTaGGCTACAATTGTAGCTCCATCTGCCAACACCACTGAGGTTTTC +
Preference number: 6 (lower is better)
Translates to: TVVAAGAALNGLLIG*ATIVAPSANTTEVF
Trigger: GAAAACCTCAGTGGTGTTGGCAGATGGAGCTACAATTGTAGCCAACCCTATTAGCAACCCATTCAGTGCTGCTCCAGCGGCAACCACAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025109.8
CDS CAA 90 bp ACTGTAACTGGAGTGGCTATAGACACATGCACTTCGGATTTAGGTTaGGCACCTGCAGGTCTAGGTGACCCAGAAGCACTCCGCATAGAG +
Preference number: 6 (lower is better)
Translates to: TVTGVAIDTCTSDLG*APAGLGDPEALRIE
Trigger: CTCTATGCGGAGTGCTTCTGGGTCACCTAGACCTGCAGGTGCCAAACCTAAATCCGAAGTGCATGTGTCTATAGCCACTCCAGTTACAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 90 bp TCTTTGGGAGGAGACTTGCGCTTCTCAGCCTTTACCAGGAGACTCTaGGCAGCGGACTTCTCATCGTCAGTGCTGTTTGTCTCCATCATA +
Preference number: 6 (lower is better)
Translates to: SLGGDLRFSAFTRRL*AADFSSSVLFVSII
Trigger: TATGATGGAGACAAACAGCACTGACGATGAGAAGTCCGCTGCCAAGAGTCTCCTGGTAAAGGCTGAGAAGCGCAAGTCTCCTCCCAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 90 bp ACATACCTCACACCTTCCTCATCAATGTACTCTTTGGGAGGAGACTaGCGCTTCTCAGCCTTTACCAGGAGACTCTTGGCAGCGGACTTC +
Preference number: 6 (lower is better)
Translates to: TYLTPSSSMYSLGGD*RFSAFTRRLLAADF
Trigger: GAAGTCCGCTGCCAAGAGTCTCCTGGTAAAGGCTGAGAAGCGCAAGTCTCCTCCCAAAGAGTACATTGATGAGGAAGGTGTGAGGTATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 72 bp CACCTTCCTCATCAATGTACTCTTTGGGAGGAGACTTaGGCTTCTCAGCCTTTACCAGGAGACTCTTGGCAG +
Preference number: 6 (lower is better)
Translates to: HLPHQCTLWEET*ASQPLPGDSWQ
Trigger: CTGCCAAGAGTCTCCTGGTAAAGGCTGAGAAGCGCAAGTCTCCTCCCAAAGAGTACATTGATGAGGAAGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp GCATCTCGGCCAGCCTCATCATTAACTGTGGCAACTTaGTTTATCAGTCCTGCGGAACCACTGCTTGCAATC +
Preference number: 6 (lower is better)
Translates to: ASRPASSLTVAT*FISPAEPLLAI
Trigger: GATTGCAAGCAGTGGTTCCGCAGGACTGATAAACCAAGTTGCCACAGTTAATGATGAGGCTGGCCGAGATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000234772.2
ENSMUST00000234846.2
ENSMUST00000235017.2
CDS CAA 72 bp GTTCAGGTGGACTGTAGATGCTACACCAACACCAGTTaGAGCTGTGATGGTGGAGTTTGGGGCTTGAGCAGA +
Preference number: 6 (lower is better)
Translates to: VQVDCRCYTNTS*SCDGGVWGLSR
Trigger: TCTGCTCAAGCCCCAAACTCCACCATCACAGCTCAAACTGGTGTTGGTGTAGCATCTACAGTCCACCTGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 72 bp TACACCTTCTCCTTCCGCTTCAACTTTGACACCTTCTaGACCGTCCCGTTCTTGTTGAGCAGCTTCAGCACC +
Preference number: 6 (lower is better)
Translates to: YTFSFRFNFDTF*TVPFLLSSFST
Trigger: GGTGCTGAAGCTGCTCAACAAGAACGGGACGGTCAAGAAGGTGTCAAAGTTGAAGCGGAAGGAGAAGGTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp GGTTGCCAGAATAGGTGCTACTGTAGCTGCAGCCACTaGTGTGCCAGTACTAAAGATGGTTTTCTGAGCCAT +
Preference number: 6 (lower is better)
Translates to: GCQNRCYCSCSH*CASTKDGFLSH
Trigger: ATGGCTCAGAAAACCATCTTTAGTACTGGCACACCAGTGGCTGCAGCTACAGTAGCACCTATTCTGGCAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp GGACATACCTCACACCTTCCTCATCAATGTACTCTTTaGGAGGAGACTTGCGCTTCTCAGCCTTTACCAGGA +
Preference number: 6 (lower is better)
Translates to: GHTSHLPHQCTL*EETCASQPLPG
Trigger: TCCTGGTAAAGGCTGAGAAGCGCAAGTCTCCTCCCAAAGAGTACATTGATGAGGAAGGTGTGAGGTATGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CAA 72 bp AGCATCTCGGCCAGCCTCATCATTAACTGTGGCAACTaGGTTTATCAGTCCTGCGGAACCACTGCTTGCAAT +
Preference number: 6 (lower is better)
Translates to: SISASLIINCGN*VYQSCGTTACN
Trigger: ATTGCAAGCAGTGGTTCCGCAGGACTGATAAACCAAGTTGCCACAGTTAATGATGAGGCTGGCCGAGATGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000234772.2
ENSMUST00000234846.2
ENSMUST00000235017.2
CDS CAA 72 bp ACACCTTCCTCATCAATGTACTCTTTGGGAGGAGACTaGCGCTTCTCAGCCTTTACCAGGAGACTCTTGGCA +
Preference number: 6 (lower is better)
Translates to: TPSSSMYSLGGD*RFSAFTRRLLA
Trigger: TGCCAAGAGTCTCCTGGTAAAGGCTGAGAAGCGCAAGTCTCCTCCCAAAGAGTACATTGATGAGGAAGGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 72 bp CGGATTATGGACATCTGCACATTTGTGGTCATAATGTaGTGCAGGTTACTGGGATGCCCCTGTTGTCCACTG +
Preference number: 6 (lower is better)
Translates to: RIMDICTFVVIM*CRLLGCPCCPL
Trigger: CAGTGGACAACAGGGGCATCCCAGTAACCTGCATCACATTATGACCACAAATGTGCAGATGTCCATAATCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS TCA 72 bp GTATGGAGCTGCTGTTTCGGAGTCCCTAACGCAGGATaGGAAGGTAGTGTGATTCTTGTTGTCACATCTCGA +
Preference number: 6 (lower is better)
Translates to: VWSCCFGVPNAG*EGSVILVVTSR
Trigger: TCGAGATGTGACAACAAGAATCACACTACCTTCTCATCCTGCGTTAGGGACTCCGAAACAGCAGCTCCATAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 72 bp AAGCGTGTTGGTTGCCAGAATAGGTGCTACTGTAGCTaGAGCCACTGGTGTGCCAGTACTAAAGATGGTTTT +
Preference number: 6 (lower is better)
Translates to: KRVGCQNRCYCS*SHWCASTKDGF
Trigger: AAAACCATCTTTAGTACTGGCACACCAGTGGCTGCAGCTACAGTAGCACCTATTCTGGCAACCAACACGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS GCA 72 bp TCCAAGGACACTGTAACTGGAGTGGCTATAGACACATaGACTTCGGATTTAGGTTTGGCACCTGCAGGTCTA +
Preference number: 6 (lower is better)
Translates to: SKDTVTGVAIDT*TSDLGLAPAGL
Trigger: TAGACCTGCAGGTGCCAAACCTAAATCCGAAGTGCATGTGTCTATAGCCACTCCAGTTACAGTGTCCTTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp ATTCTTGTTGTCACATCTCGAGACTGTGCAGGACGCTaGATACTAATGGCTGCAGATGGTGGATGCTGGATA +
Preference number: 6 (lower is better)
Translates to: ILVVTSRDCAGR*ILMAADGGCWI
Trigger: TATCCAGCATCCACCATCTGCAGCCATTAGTATCCAGCGTCCTGCACAGTCTCGAGATGTGACAACAAGAAT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp AGAACCTTAAGCATAGAGTCTCTGGCCTCACTGATTTaGTCCATCACTAGTTTACACCGCTGCATGTTTCCC +
Preference number: 6 (lower is better)
Translates to: RTLSIESLASLI*SITSLHRCMFP
Trigger: GGGAAACATGCAGCGGTGTAAACTAGTGATGGACCAAATCAGTGAGGCCAGAGACTCTATGCTTAAGGTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2
CDS CCA 72 bp ATTTTGATTGGATATGGTCTCCAAGGACACTGTAACTaGAGTGGCTATAGACACATGCACTTCGGATTTAGG +
Preference number: 6 (lower is better)
Translates to: ILIGYGLQGHCN*SGYRHMHFGFR
Trigger: CCTAAATCCGAAGTGCATGTGTCTATAGCCACTCCAGTTACAGTGTCCTTGGAGACCATATCCAATCAAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025109.8
ENSMUST00000178164.8
ENSMUST00000235017.2