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Pregenerated sensors for SAMT4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025051

Ensembl transcript IDs: ENSMUST00000026029.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp TTTCAAATAGCTTATCTCAGAAAGAAACATGATCCCACCAAAAAGTaGCATGGTTGCAGTCAGGATTCCCACTGGAAATACAGCAGTCAC +
Preference number: 5 (lower is better)
Translates to: FQIAYLRKKHDPTKK*HGCSQDSHWKYSSH
Trigger: GTGACTGCTGTATTTCCAGTGGGAATCCTGACTGCAACCATGTCACTTTTTGGTGGGATCATGTTTCTTTCTGAGATAAGCTATTTGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026029.2
CDS TCA 90 bp CAACTTGACTCTGTATTTTCAAATAGCTTATCTCAGAAAGAAACATaGTCCCACCAAAAAGTGACATGGTTGCAGTCAGGATTCCCACTG +
Preference number: 5 (lower is better)
Translates to: QLDSVFSNSLSQKET*SHQKVTWLQSGFPL
Trigger: CAGTGGGAATCCTGACTGCAACCATGTCACTTTTTGGTGGGATCATGTTTCTTTCTGAGATAAGCTATTTGAAAATACAGAGTCAAGTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026029.2
CDS CCA 90 bp CACATATTTGTTTTTCAAGGCTTCTTTCTGGACAGGAAATTTGGGTaGAAAGTCAAGAGTAGTTTGGCCATAAAGATCTACCATATGGTT +
Preference number: 5 (lower is better)
Translates to: HIFVFQGFFLDRKFG*KVKSSLAIKIYHMV
Trigger: AACCATATGGTAGATCTTTATGGCCAAACTACTCTTGACTTTCCACCCAAATTTCCTGTCCAGAAAGAAGCCTTGAAAAACAAATATGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026029.2
CDS TCA 72 bp ACATCATCGTCTTCAAATTCCCATAGGCGCCAGCATTaGTTGCTGGCAATGGCTATTTCAAACACCAAAGCT +
Preference number: 6 (lower is better)
Translates to: TSSSSNSHRRQH*LLAMAISNTKA
Trigger: AGCTTTGGTGTTTGAAATAGCCATTGCCAGCAATCAATGCTGGCGCCTATGGGAATTTGAAGACGATGATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026029.2
CDS CAA 72 bp CTGGACAGGAAATTTGGGTGGAAAGTCAAGAGTAGTTaGGCCATAAAGATCTACCATATGGTTCCAGCTCAC +
Preference number: 6 (lower is better)
Translates to: LDRKFGWKVKSS*AIKIYHMVPAH
Trigger: GTGAGCTGGAACCATATGGTAGATCTTTATGGCCAAACTACTCTTGACTTTCCACCCAAATTTCCTGTCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026029.2
CDS CAA 90 bp GGCTTCTTTCTGGACAGGAAATTTGGGTGGAAAGTCAAGAGTAGTTaGGCCATAAAGATCTACCATATGGTTCCAGCTCACAGCAACAAA +
Preference number: 6 (lower is better)
Translates to: GFFLDRKFGWKVKSS*AIKIYHMVPAHSNK
Trigger: TTTGTTGCTGTGAGCTGGAACCATATGGTAGATCTTTATGGCCAAACTACTCTTGACTTTCCACCCAAATTTCCTGTCCAGAAAGAAGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026029.2
CDS TCA 72 bp GCTTATCTCAGAAAGAAACATGATCCCACCAAAAAGTaGCATGGTTGCAGTCAGGATTCCCACTGGAAATAC +
Preference number: 6 (lower is better)
Translates to: AYLRKKHDPTKK*HGCSQDSHWKY
Trigger: GTATTTCCAGTGGGAATCCTGACTGCAACCATGTCACTTTTTGGTGGGATCATGTTTCTTTCTGAGATAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026029.2
CDS CAA 90 bp ATGGTTGCAGTCAGGATTCCCACTGGAAATACAGCAGTCACATATTaGTTTTTCAAGGCTTCTTTCTGGACAGGAAATTTGGGTGGAAAG +
Preference number: 6 (lower is better)
Translates to: MVAVRIPTGNTAVTY*FFKASFWTGNLGGK
Trigger: CTTTCCACCCAAATTTCCTGTCCAGAAAGAAGCCTTGAAAAACAAATATGTGACTGCTGTATTTCCAGTGGGAATCCTGACTGCAACCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026029.2
CDS CAA 72 bp AAGAGGCCAGTCAACTTGAAGATGCTCTTCTTCTCTTaGGAAAATCTTTGTGTATCAAGGGTGAAGAGATCC +
Preference number: 6 (lower is better)
Translates to: KRPVNLKMLFFS*ENLCVSRVKRS
Trigger: GGATCTCTTCACCCTTGATACACAAAGATTTTCCAAAGAGAAGAAGAGCATCTTCAAGTTGACTGGCCTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026029.2
CDS CAA 72 bp ACCAAAGCTGATAGGCTGCTAAAGAGGCCAGTCAACTaGAAGATGCTCTTCTTCTCTTTGGAAAATCTTTGT +
Preference number: 6 (lower is better)
Translates to: TKADRLLKRPVN*KMLFFSLENLC
Trigger: ACAAAGATTTTCCAAAGAGAAGAAGAGCATCTTCAAGTTGACTGGCCTCTTTAGCAGCCTATCAGCTTTGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026029.2
CDS CAA 90 bp TCAGGCCTCTTGAAGGGCCACTTTGGAAACACTCTTGGCCTCAACTaGACTCTGTATTTTCAAATAGCTTATCTCAGAAAGAAACATGAT +
Preference number: 6 (lower is better)
Translates to: SGLLKGHFGNTLGLN*TLYFQIAYLRKKHD
Trigger: ATCATGTTTCTTTCTGAGATAAGCTATTTGAAAATACAGAGTCAAGTTGAGGCCAAGAGTGTTTCCAAAGTGGCCCTTCAAGAGGCCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026029.2
CDS CCA 72 bp GTTTTTCAAGGCTTCTTTCTGGACAGGAAATTTGGGTaGAAAGTCAAGAGTAGTTTGGCCATAAAGATCTAC +
Preference number: 6 (lower is better)
Translates to: VFQGFFLDRKFG*KVKSSLAIKIY
Trigger: GTAGATCTTTATGGCCAAACTACTCTTGACTTTCCACCCAAATTTCCTGTCCAGAAAGAAGCCTTGAAAAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026029.2