Pregenerated sensors for SAMT3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035454

Ensembl transcript IDs: ENSMUST00000047945.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CCAGCTCACGGAAACAAATGTGCAAAGGCTGCTAATACACAAAAGTaGGGCAGAGATCTTGTACAAAAGCATCTGTCCCTTAACAAACGA	+
Preference number: 5 (lower is better) Translates to: PAHGNKCAKAANTQK*GRDLVQKHLSLNKR Trigger: TCGTTTGTTAAGGGACAGATGCTTTTGTACAAGATCTCTGCCTCACTTTTGTGTATTAGCAGCCTTTGCACATTTGTTTCCGTGAGCTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047945.2
CDS TCA 90 bp	ATCCAAAGAGCTCATCTCAAAGAGGAATATAATCACACCAAAGAGTaGCATGGTAGCTGTCAGGACCCCTATTGGGAATGCAGCAGTATA	+
Preference number: 5 (lower is better) Translates to: IQRAHLKEEYNHTKE*HGSCQDPYWECSSI Trigger: TATACTGCTGCATTCCCAATAGGGGTCCTGACAGCTACCATGTCACTCTTTGGTGTGATTATATTCCTCTTTGAGATGAGCTCTTTGGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047945.2
CDS CCA 72 bp	CAGTCTGGAAGCACACTGGGCCTCCACTTCACTCTGTaGATCCAAAGAGCTCATCTCAAAGAGGAATATAAT	+
Preference number: 6 (lower is better) Translates to: QSGSTLGLHFTL*IQRAHLKEEYN Trigger: ATTATATTCCTCTTTGAGATGAGCTCTTTGGATCCACAGAGTGAAGTGGAGGCCCAGTGTGCTTCCAGACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047945.2
CDS CAA 72 bp	TATCGTCAAATTCCCATAGGCGCCAGCATCGGCTGTTaGCAAGGATTATTTCAAACACCACAGCTGTTAGGC	+
Preference number: 6 (lower is better) Translates to: YRQIPIGASIGC*QGLFQTPQLLG Trigger: GCCTAACAGCTGTGGTGTTTGAAATAATCCTTGCAAACAGCCGATGCTGGCGCCTATGGGAATTTGACGATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047945.2
CDS CAA 72 bp	CTTAACAGGAAAGCTGGGTGGAAAATCAAGTGTGGTTaGGCCGTAAAGGTCTACAACATGGTTCCAGCTCAC	+
Preference number: 6 (lower is better) Translates to: LNRKAGWKIKCG*AVKVYNMVPAH Trigger: GTGAGCTGGAACCATGTTGTAGACCTTTACGGCCAAACCACACTTGATTTTCCACCCAGCTTTCCTGTTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047945.2
CDS TCA 72 bp	GCTCATCTCAAAGAGGAATATAATCACACCAAAGAGTaGCATGGTAGCTGTCAGGACCCCTATTGGGAATGC	+
Preference number: 6 (lower is better) Translates to: AHLKEEYNHTKE*HGSCQDPYWEC Trigger: GCATTCCCAATAGGGGTCCTGACAGCTACCATGTCACTCTTTGGTGTGATTATATTCCTCTTTGAGATGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047945.2
CDS CAA 90 bp	ATCCTTTTTCTTAACAGGAAAGCTGGGTGGAAAATCAAGTGTGGTTaGGCCGTAAAGGTCTACAACATGGTTCCAGCTCACGGAAACAAA	+
Preference number: 6 (lower is better) Translates to: ILFLNRKAGWKIKCG*AVKVYNMVPAHGNK Trigger: TTTGTTTCCGTGAGCTGGAACCATGTTGTAGACCTTTACGGCCAAACCACACTTGATTTTCCACCCAGCTTTCCTGTTAAGAAAAAGGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047945.2
CDS TCA 72 bp	GGAAACAAATGTGCAAAGGCTGCTAATACACAAAAGTaGGGCAGAGATCTTGTACAAAAGCATCTGTCCCTT	+
Preference number: 6 (lower is better) Translates to: GNKCAKAANTQK*GRDLVQKHLSL Trigger: AAGGGACAGATGCTTTTGTACAAGATCTCTGCCTCACTTTTGTGTATTAGCAGCCTTTGCACATTTGTTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047945.2

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