Pregenerated sensors for SAMSN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022876Ensembl transcript IDs: ENSMUST00000114239.9
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTCCATTTGATTACAAGAAGTTCAAATaGAATTCGGCTGCGGGTGTG | + |
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Preference number: 2 (lower is better) Translates to: YRLKHLALWGTFGNLPFDYKKFK*NSAAGV Trigger: CACACCCGCAGCCGAATTCCATTTGAACTTCTTGTA...ATCAAATGGAAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| 3UTR-3UTR CCA 90 bp | TCCATCTTTGAAAACAAGTCTCTAATCTCAGTCCCCAACTTCCCAGTACTTCAAAGTACATACCACACATaGGCTTGCATCATGTCTTTT | + |
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Preference number: 2 (lower is better) Translates to: SIFENKSLISVPNFPVLQSTYHT*ACIMSF Trigger: AAAAGACATGATGCAAGCCCATGTGTGGTATGTACT...TTGAAGTACTGGGAAGTTGGGGACTGAGATTAGAGACTTGTTTTCAAAGATGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| 3UTR CCA 72 bp | CTTCCATTTGATCCTGTAGCATACAAGAAGTTCAAATaGAATTCGGCTGCGGGTGTGGACATGAGAGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: LPFDPVAYKKFK*NSAAGVDMRVC Trigger: ACACACTCTCATGTCCACACCCGCAGCCGAATTCCATTTGAACTTCTTGTATGCTACAGGATCAAATGGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| 3UTR TCA 72 bp | CTTAGCACTTTGGGGTACATTTGGAAACCTTCCATTTaGTCCTGTAGCATACAAGAAGTTCAAATGGAATTC | + |
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Preference number: 3 (lower is better) Translates to: LSTLGYIWKPSI*SCSIQEVQMEF Trigger: GAATTCCATTTGAACTTCTTGTATGCTACAGGATCAAATGGAAGGTTTCCAAATGTACCCCAAAGTGCTAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| 3UTR-3UTR CAA 90 bp | AGCCAAAACAGACAATATATTGTTAACTCTCTCTGCATATCAGATAACAGAGTGGAAACACTTAGCACTTaGGGGTACATTTGGAAACCT | + |
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Preference number: 3 (lower is better) Translates to: SQNRQYIVNSLCISDNRVETLST*GYIWKP Trigger: AGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTC...CACTCTGTTATCTGATATGCAGAGAGAGTTAACAATATATTGTCTGTTTTGGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR GCA 90 bp | TCCATCTTTGAAAACAAGTCTCTAATCTCAGTCCCCAACTTCCCAGTACTTCAAGGCGTGAAGTCTGTGTaGACTTTGGCCCGGCCACAG | + |
|
Preference number: 4 (lower is better) Translates to: SIFENKSLISVPNFPVLQGVKSV*TLARPQ Trigger: CTGTGGCCGGGCCAAAGTGCACACAGACTTCACGCC...TTGAAGTACTGGGAAGTTGGGGACTGAGATTAGAGACTTGTTTTCAAAGATGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR TCA 90 bp | TACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTCCATTTGATGCCACAGAATGGCCCTaGGTAGGGGCTGTCATCATC | + |
|
Preference number: 4 (lower is better) Translates to: YRLKHLALWGTFGNLPFDATEWP*VGAVII Trigger: GATGATGACAGCCCCTACTCAGGGCCATTCTGTGGC...ATCAAATGGAAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR TCA 90 bp | TACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTCCATTTGATCATAGGGACTTGGCGTaGAGTCTGTGTGCACTTTGG | + |
|
Preference number: 4 (lower is better) Translates to: YRLKHLALWGTFGNLPFDHRDLA*SLCALW Trigger: CCAAAGTGCACACAGACTTCACGCCAAGTCCCTATG...ATCAAATGGAAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR TCA 90 bp | TACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTCCATTTGATGTGTTTCTCCTTGTCTaGGGCATTGGATGGCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: YRLKHLALWGTFGNLPFDVFLLV*GIGWLP Trigger: AGGAAGCCATCCAATGCCTCAGACAAGGAGAAACAC...ATCAAATGGAAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR TCA 90 bp | TACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTCCATTTGATGTCGCTGGCTTTGAGTaGGATCTTCTCTGTATGTGT | + |
|
Preference number: 4 (lower is better) Translates to: YRLKHLALWGTFGNLPFDVAGFE*DLLCMC Trigger: ACACATACAGAGAAGATCTCACTCAAAGCCAGCGAC...ATCAAATGGAAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR TCA 90 bp | TACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTCCATTTGATAGTCACTGGATTCTGTaGTGGCAATCTTCTGCACCA | + |
|
Preference number: 4 (lower is better) Translates to: YRLKHLALWGTFGNLPFDSHWIL*WQSSAP Trigger: TGGTGCAGAAGATTGCCATCACAGAATCCAGTGACT...ATCAAATGGAAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR GCA 90 bp | GAACAATTGTACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTGGTTCTCTCTTCTCCTaGTTCTGGGGACCTTTATCT | + |
|
Preference number: 4 (lower is better) Translates to: EQLYRLKHLALWGTFGNLGSLFS*FWGPLS Trigger: AGATAAAGGTCCCCAGAAGCAGGAGAAGAGAGAACC...AAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTACAATTGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CCA 90 bp | GAACAATTGTACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTCCTTGTCTGAGGCATTaGATGGCTTCCTCTTTAGCA | + |
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Preference number: 4 (lower is better) Translates to: EQLYRLKHLALWGTFGNLPCLRH*MASSLA Trigger: TGCTAAAGAGGAAGCCATCCAATGCCTCAGACAAGG...AAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTACAATTGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR GCA 90 bp | TCCATCTTTGAAAACAAGTCTCTAATCTCAGTCCCCAACTTCCCAGTACTTCAACTAGACTTCCTCCACTaGTTGAAGTCTTGCTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: SIFENKSLISVPNFPVLQLDFLH*LKSCFV Trigger: AACAAAGCAAGACTTCAAGCAGTGGAGGAAGTCTAG...TTGAAGTACTGGGAAGTTGGGGACTGAGATTAGAGACTTGTTTTCAAAGATGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR GCA 90 bp | GAACAATTGTACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTCAAAATTCCCAAAACTaGTGCTGCGCTTCGGTTTTT | + |
|
Preference number: 4 (lower is better) Translates to: EQLYRLKHLALWGTFGNLQNSQN*CCASVF Trigger: AAAAACCGAAGCGCAGCAGCAGTTTTGGGAATTTTG...AAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTACAATTGTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR GCA 90 bp | TCCATCTTTGAAAACAAGTCTCTAATCTCAGTCCCCAACTTCCCAGTACTTCAACACTGCTTGAAGTCTTaGTTTGTTCTTCACTTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: SIFENKSLISVPNFPVLQHCLKS*FVLHFH Trigger: ATGGAAGTGAAGAACAAAGCAAGACTTCAAGCAGTG...TTGAAGTACTGGGAAGTTGGGGACTGAGATTAGAGACTTGTTTTCAAAGATGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR GCA 90 bp | TACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTCCATTTGATGTGATGGCAATCTTCTaGACCATGTCAGACAGATTT | + |
|
Preference number: 4 (lower is better) Translates to: YRLKHLALWGTFGNLPFDVMAIF*TMSDRF Trigger: AAATCTGTCTGACATGGTGCAGAAGATTGCCATCAC...ATCAAATGGAAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CCA 90 bp | AGCCAAAACAGACAATATATTGTTAACTCTCTCTGCATATCAGATAACAGAGTGTCCTGGATAGTCTGGTaGTTCTCTCTTCTCCTGCTT | + |
|
Preference number: 4 (lower is better) Translates to: SQNRQYIVNSLCISDNRVSWIVW*FSLLLL Trigger: AAGCAGGAGAAGAGAGAACCACCAGACTATCCAGGA...CACTCTGTTATCTGATATGCAGAGAGAGTTAACAATATATTGTCTGTTTTGGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CCA 90 bp | AGCCAAAACAGACAATATATTGTTAACTCTCTCTGCATATCAGATAACAGAGTGAACTCCTGGATAGTCTaGTGGTTCTCTCTTCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: SQNRQYIVNSLCISDNRVNSWIV*WFSLLL Trigger: CAGGAGAAGAGAGAACCACCAGACTATCCAGGAGTT...CACTCTGTTATCTGATATGCAGAGAGAGTTAACAATATATTGTCTGTTTTGGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CCA 90 bp | GAACAATTGTACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTTGTCCACATTCCCATTaGTGTTTTGCAGATAATGTC | + |
|
Preference number: 4 (lower is better) Translates to: EQLYRLKHLALWGTFGNLCPHSH*CFADNV Trigger: GACATTATCTGCAAAACACCAATGGGAATGTGGACA...AAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTACAATTGTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS TCA 90 bp | ACTCTGCCCACTGTAAAGACTGTCCATAGAGTCGCTGGCTTTGAGTaGGATCTTCTCTGTATGTGTTCCAATCATGGGATCACTGTTCCG | + |
|
Preference number: 5 (lower is better) Translates to: TLPTVKTVHRVAGFE*DLLCMCSNHGITVP Trigger: CGGAACAGTGATCCCATGATTGGAACACATACAGAGAAGATCTCACTCAAAGCCAGCGACTCTATGGACAGTCTTTACAGTGGGCAGAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS CCA 90 bp | GATCTTCTCTGTATGTGTTCCAATCATGGGATCACTGTTCCGATATaGGAGGGCTTCCTCTCCACTTTCTTCCTCTTTTTCCTCAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: DLLCMCSNHGITVPI*EGFLSTFFLFFLRK Trigger: CTTTCTGAGGAAAAAGAGGAAGAAAGTGGAGAGGAAGCCCTCCCATATCGGAACAGTGATCCCATGATTGGAACACATACAGAGAAGATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CAA 90 bp | GAACAATTGTACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTTCCTTGTCTGAGGCATaGGATGGCTTCCTCTTTAGC | + |
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Preference number: 5 (lower is better) Translates to: EQLYRLKHLALWGTFGNLSLSEA*DGFLFS Trigger: GCTAAAGAGGAAGCCATCCAATGCCTCAGACAAGGA...AAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTACAATTGTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CAA 90 bp | GAACAATTGTACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTTTTTGGTGTTTCTCCTaGTCTGAGGCATTGGATGGC | + |
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Preference number: 5 (lower is better) Translates to: EQLYRLKHLALWGTFGNLFWCFS*SEALDG Trigger: GCCATCCAATGCCTCAGACAAGGAGAAACACCAAAA...AAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTACAATTGTTC 42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CAA 90 bp | TCCATCTTTGAAAACAAGTCTCTAATCTCAGTCCCCAACTTCCCAGTACTTCAAGTTCTTCACTTCCATTaGTCAGTTCCCTGTCATGGA | + |
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Preference number: 5 (lower is better) Translates to: SIFENKSLISVPNFPVLQVLHFH*SVPCHG Trigger: TCCATGACAGGGAACTGACAAATGGAAGTGAAGAAC...TTGAAGTACTGGGAAGTTGGGGACTGAGATTAGAGACTTGTTTTCAAAGATGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CAA 90 bp | TCCATCTTTGAAAACAAGTCTCTAATCTCAGTCCCCAACTTCCCAGTACTTCAAGACTTCCTCCACTGCTaGAAGTCTTGCTTTGTTCTT | + |
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Preference number: 5 (lower is better) Translates to: SIFENKSLISVPNFPVLQDFLHC*KSCFVL Trigger: AAGAACAAAGCAAGACTTCAAGCAGTGGAGGAAGTC...TTGAAGTACTGGGAAGTTGGGGACTGAGATTAGAGACTTGTTTTCAAAGATGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CAA 90 bp | TACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTCCATTTGATAGCTGTCCCGATTACTaGTTCCATCTGAACAGCTTG | + |
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Preference number: 5 (lower is better) Translates to: YRLKHLALWGTFGNLPFDSCPDY*FHLNSL Trigger: CAAGCTGTTCAGATGGAACAAGTAATCGGGACAGCT...ATCAAATGGAAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CAA 90 bp | TCCATCTTTGAAAACAAGTCTCTAATCTCAGTCCCCAACTTCCCAGTACTTCAAGACTCCAGATCTTCCTaGCCATTATCTGAGTTTTCC | + |
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Preference number: 5 (lower is better) Translates to: SIFENKSLISVPNFPVLQDSRSS*PLSEFS Trigger: GGAAAACTCAGATAATGGCAAGGAAGATCTGGAGTC...TTGAAGTACTGGGAAGTTGGGGACTGAGATTAGAGACTTGTTTTCAAAGATGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CAA 90 bp | GAACAATTGTACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTCCACTGCTTGAAGTCTaGCTTTGTTCTTCACTTCCA | + |
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Preference number: 5 (lower is better) Translates to: EQLYRLKHLALWGTFGNLPLLEV*LCSSLP Trigger: TGGAAGTGAAGAACAAAGCAAGACTTCAAGCAGTGG...AAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTACAATTGTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CAA 90 bp | TACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTCCATTTGATAGCTTGTTATTCCACTaGATGAACTCTGCCCACTGT | + |
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Preference number: 5 (lower is better) Translates to: YRLKHLALWGTFGNLPFDSLLFH*MNSAHC Trigger: ACAGTGGGCAGAGTTCATCAAGTGGAATAACAAGCT...ATCAAATGGAAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CAA 90 bp | TACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTCCATTTGATAAGTTTCCCACTTTATaGTTCAGCATCCCTGTCCAC | + |
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Preference number: 5 (lower is better) Translates to: YRLKHLALWGTFGNLPFDKFPTL*FSIPVH Trigger: GTGGACAGGGATGCTGAACAATAAAGTGGGAAACTT...ATCAAATGGAAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CAA 90 bp | GAACAATTGTACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTATGATGTCTCCTTTCTaGATTTTAAGGGAGTCGGTG | + |
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Preference number: 5 (lower is better) Translates to: EQLYRLKHLALWGTFGNLMMSPF*ILRESV Trigger: CACCGACTCCCTTAAAATCAAGAAAGGAGACATCAT...AAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTACAATTGTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS CCA 90 bp | GAAGTTTCCCACTTTATTGTTCAGCATCCCTGTCCACATTCCCATTaGTGTTTTGCAGATAATGTCTATGATGTCTCCTTTCTTGATTTT | + |
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Preference number: 5 (lower is better) Translates to: EVSHFIVQHPCPHSH*CFADNVYDVSFLDF Trigger: AAAATCAAGAAAGGAGACATCATAGACATTATCTGCAAAACACCAATGGGAATGTGGACAGGGATGCTGAACAATAAAGTGGGAAACTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CAA 90 bp | TACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTCCATTTGATTGTCATGGACCTCAATaGAGTCATCAGATTTTGATA | + |
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Preference number: 5 (lower is better) Translates to: YRLKHLALWGTFGNLPFDCHGPQ*SHQILI Trigger: TATCAAAATCTGATGACTCAATTGAGGTCCATGACA...ATCAAATGGAAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CAA 90 bp | TACAGACTGAAACACTTAGCACTTTGGGGTACATTTGGAAACCTTCCATTTGATATTCCCATTGGTGTTTaGCAGATAATGTCTATGATG | + |
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Preference number: 5 (lower is better) Translates to: YRLKHLALWGTFGNLPFDIPIGV*QIMSMM Trigger: CATCATAGACATTATCTGCAAAACACCAATGGGAAT...ATCAAATGGAAGGTTTCCAAATGTACCCCAAAGTGCTAAGTGTTTCAGTCTGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS-3UTR CAA 90 bp | AGCCAAAACAGACAATATATTGTTAACTCTCTCTGCATATCAGATAACAGAGTGTTCCATCTGAACAGCTaGTTATTCCACTTGATGAAC | + |
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Preference number: 5 (lower is better) Translates to: SQNRQYIVNSLCISDNRVFHLNS*LFHLMN Trigger: GTTCATCAAGTGGAATAACAAGCTGTTCAGATGGAA...CACTCTGTTATCTGATATGCAGAGAGAGTTAACAATATATTGTCTGTTTTGGCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS CCA 72 bp | AGGATAGAGGCACGGATTCCTTTTCATGTTCTACAGTaGTTTCTTCATCCAGGAGACTCTCGGCAGCAGACA | + |
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Preference number: 6 (lower is better) Translates to: RIEARIPFHVLQ*FLHPGDSRQQT Trigger: TGTCTGCTGCCGAGAGTCTCCTGGATGAAGAAACCACTGTAGAACATGAAAAGGAATCCGTGCCTCTATCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS CAA 90 bp | CATCCAGTCGGAAGCTGTCCCGATTACTTGTTCCATCTGAACAGCTaGTTATTCCACTTGATGAACTCTGCCCACTGTAAAGACTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: HPVGSCPDYLFHLNS*LFHLMNSAHCKDCP Trigger: TGGACAGTCTTTACAGTGGGCAGAGTTCATCAAGTGGAATAACAAGCTGTTCAGATGGAACAAGTAATCGGGACAGCTTCCGACTGGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS CCA 72 bp | TGTATGTGTTCCAATCATGGGATCACTGTTCCGATATaGGAGGGCTTCCTCTCCACTTTCTTCCTCTTTTTC | + |
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Preference number: 6 (lower is better) Translates to: CMCSNHGITVPI*EGFLSTFFLFF Trigger: GAAAAAGAGGAAGAAAGTGGAGAGGAAGCCCTCCCATATCGGAACAGTGATCCCATGATTGGAACACATACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS CAA 72 bp | GGAAGCTGTCCCGATTACTTGTTCCATCTGAACAGCTaGTTATTCCACTTGATGAACTCTGCCCACTGTAAA | + |
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Preference number: 6 (lower is better) Translates to: GSCPDYLFHLNS*LFHLMNSAHCK Trigger: TTTACAGTGGGCAGAGTTCATCAAGTGGAATAACAAGCTGTTCAGATGGAACAAGTAATCGGGACAGCTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS CAA 90 bp | GACTTCCTCCACTGCTTGAAGTCTTGCTTTGTTCTTCACTTCCATTaGTCAGTTCCCTGTCATGGACCTCAATTGAGTCATCAGATTTTG | + |
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Preference number: 6 (lower is better) Translates to: DFLHCLKSCFVLHFH*SVPCHGPQLSHQIL Trigger: CAAAATCTGATGACTCAATTGAGGTCCATGACAGGGAACTGACAAATGGAAGTGAAGAACAAAGCAAGACTTCAAGCAGTGGAGGAAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS CAA 90 bp | CCCACTTTATTGTTCAGCATCCCTGTCCACATTCCCATTGGTGTTTaGCAGATAATGTCTATGATGTCTCCTTTCTTGATTTTAAGGGAG | + |
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Preference number: 6 (lower is better) Translates to: PTLLFSIPVHIPIGV*QIMSMMSPFLILRE Trigger: CTCCCTTAAAATCAAGAAAGGAGACATCATAGACATTATCTGCAAAACACCAATGGGAATGTGGACAGGGATGCTGAACAATAAAGTGGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS CCA 72 bp | CTTTGTTCTTCACTTCCATTTGTCAGTTCCCTGTCATaGACCTCAATTGAGTCATCAGATTTTGATACGGAA | + |
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Preference number: 6 (lower is better) Translates to: LCSSLPFVSSLS*TSIESSDFDTE Trigger: TTCCGTATCAAAATCTGATGACTCAATTGAGGTCCATGACAGGGAACTGACAAATGGAAGTGAAGAACAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS CCA 72 bp | CACTTTATTGTTCAGCATCCCTGTCCACATTCCCATTaGTGTTTTGCAGATAATGTCTATGATGTCTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: HFIVQHPCPHSH*CFADNVYDVSF Trigger: AAAGGAGACATCATAGACATTATCTGCAAAACACCAATGGGAATGTGGACAGGGATGCTGAACAATAAAGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS CAA 72 bp | GTTCCCTGTCATGGACCTCAATTGAGTCATCAGATTTaGATACGGAATTATTCCGAAAACGGTCAAAATTCC | + |
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Preference number: 6 (lower is better) Translates to: VPCHGPQLSHQI*IRNYSENGQNS Trigger: GGAATTTTGACCGTTTTCGGAATAATTCCGTATCAAAATCTGATGACTCAATTGAGGTCCATGACAGGGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS CAA 72 bp | CACTTCCATTTGTCAGTTCCCTGTCATGGACCTCAATaGAGTCATCAGATTTTGATACGGAATTATTCCGAA | + |
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Preference number: 6 (lower is better) Translates to: HFHLSVPCHGPQ*SHQILIRNYSE Trigger: TTCGGAATAATTCCGTATCAAAATCTGATGACTCAATTGAGGTCCATGACAGGGAACTGACAAATGGAAGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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| CDS CAA 72 bp | TTGTTCAGCATCCCTGTCCACATTCCCATTGGTGTTTaGCAGATAATGTCTATGATGTCTCCTTTCTTGATT | + |
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Preference number: 6 (lower is better) Translates to: LFSIPVHIPIGV*QIMSMMSPFLI Trigger: AATCAAGAAAGGAGACATCATAGACATTATCTGCAAAACACCAATGGGAATGTGGACAGGGATGCTGAACAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114239.9 |
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