Pregenerated sensors for SAMD8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021770Ensembl transcript IDs: ENSMUST00000022292.10, ENSMUST00000119430.3, ENSMUST00000144061.2
Found 117 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGGCCCATCACAGCTGTGTGTGGGCTCTCCGTTACAGAGCCAGTCTaGACTCTGAAGAGCACTAAGGAATGGAGTCATGGGACTCATAGG | + |
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Preference number: 1 (lower is better) Translates to: GPITAVCGLSVTEPV*TLKSTKEWSHGTHR Trigger: CCTATGAGTCCCATGACTCCATTCCTTAGTGCTCTTCAGAGTGCAGACTGGCTCTGTAACGGAGAGCCCACACACAGCTGTGATGGGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR TCA 90 bp | CACAGGTATCGGCCTGACATCACCCCACGCTGGGTCTTCCTACAGTaGGGGGCGGAAACTCTTTCCATGACCTCTCCATTCAAACAGCTA | + |
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Preference number: 1 (lower is better) Translates to: HRYRPDITPRWVFLQ*GAETLSMTSPFKQL Trigger: TAGCTGTTTGAATGGAGAGGTCATGGAAAGAGTTTCCGCCCCTCACTGTAGGAAGACCCAGCGTGGGGTGATGTCAGGCCGATACCTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR GCA 90 bp | AAACAAACAGGAGTGACCCAAGGCCACTCAATCCGTACAGCAGGCTaGTGTCAGGCACTCTCACCATCAATAGCTTGGCAAGGGCAACGC | + |
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Preference number: 1 (lower is better) Translates to: KQTGVTQGHSIRTAG*CQALSPSIAWQGQR Trigger: GCGTTGCCCTTGCCAAGCTATTGATGGTGAGAGTGCCTGACAGCAGCCTGCTGTACGGATTGAGTGGCCTTGGGTCACTCCTGTTTGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR TCA 90 bp | AGCCACACAGCCACATGCTTGGTAGTCCAGCGGCGAATGCAGAGTTaGCTAGGACCTGCCATTTCTTTCTCTACTTCCCTTGGTTGCAGG | + |
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Preference number: 1 (lower is better) Translates to: SHTATCLVVQRRMQS*LGPAISFSTSLGCR Trigger: CCTGCAACCAAGGGAAGTAGAGAAAGAAATGGCAGGTCCTAGTCAACTCTGCATTCGCCGCTGGACTACCAAGCATGTGGCTGTGTGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR TCA 90 bp | TCACAGCTGTGTGTGGGCTCTCCGTTACAGAGCCAGTCTGCACTCTaGAGAGCACTAAGGAATGGAGTCATGGGACTCATAGGACTGTCA | + |
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Preference number: 1 (lower is better) Translates to: SQLCVGSPLQSQSAL*RALRNGVMGLIGLS Trigger: TGACAGTCCTATGAGTCCCATGACTCCATTCCTTAGTGCTCTTCAGAGTGCAGACTGGCTCTGTAACGGAGAGCCCACACACAGCTGTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR CCA 90 bp | ATCCGTACAGCAGGCTGCTGTCAGGCACTCTCACCATCAATAGCTTaGCAAGGGCAACGCCAGCTGCACCTGTTTCCTATTGTGTTCTAT | + |
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Preference number: 1 (lower is better) Translates to: IRTAGCCQALSPSIA*QGQRQLHLFPIVFY Trigger: ATAGAACACAATAGGAAACAGGTGCAGCTGGCGTTGCCCTTGCCAAGCTATTGATGGTGAGAGTGCCTGACAGCAGCCTGCTGTACGGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR CCA 90 bp | CCACACACTTCCATATATCTTTCCAGTACACTGCAGGTGCTGTCCTaGCACGGAGAGGGAGGTCACAAACATGGTAAAGCAGCGAAGCAA | + |
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Preference number: 1 (lower is better) Translates to: PHTSIYLSSTLQVLS*HGEGGHKHGKAAKQ Trigger: TTGCTTCGCTGCTTTACCATGTTTGTGACCTCCCTCTCCGTGCCAGGACAGCACCTGCAGTGTACTGGAAAGATATATGGAAGTGTGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR CCA 90 bp | CACAAGTGTGGACGCCAGTCAGAGTCATTCCAAAGCCGCTCCAGATaGCAAATGCCCGTCGTAGTTTCTCCCACACACTTCCATATATCT | + |
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Preference number: 1 (lower is better) Translates to: HKCGRQSESFQSRSR*QMPVVVSPTHFHIS Trigger: AGATATATGGAAGTGTGTGGGAGAAACTACGACGGGCATTTGCCATCTGGAGCGGCTTTGGAATGACTCTGACTGGCGTCCACACTTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR GCA 90 bp | GGGAGGGCAGCGACACTGGGATTAGAATGTAGGCAATTCTTCCTTTaGACCCCCAAGAACTCAAAACCTTTCCTTGCTTCTGTACTAAGC | + |
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Preference number: 1 (lower is better) Translates to: GRAATLGLECRQFFL*TPKNSKPFLASVLS Trigger: GCTTAGTACAGAAGCAAGGAAAGGTTTTGAGTTCTTGGGGGTGCAAAGGAAGAATTGCCTACATTCTAATCCCAGTGTCGCTGCCCTCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR TCA 90 bp | AACATAATTGAACTTGATTTTGATTGCTTTACCTCATCTCTCAGGTaGGAAATGAGCGCTGTCTCCAGCCTCCTCAGAGCAGGGGTTCTC | + |
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Preference number: 1 (lower is better) Translates to: NIIELDFDCFTSSLR*EMSAVSSLLRAGVL Trigger: GAGAACCCCTGCTCTGAGGAGGCTGGAGACAGCGCTCATTTCTCACCTGAGAGATGAGGTAAAGCAATCAAAATCAAGTTCAATTATGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR CCA 90 bp | CTACCACAGGGATTTTCATGTCTTCAAGTAACACTAGTTTCTCTGTaGGCAGGGAGACCTTTAGGTAGAATTCTCAAAACTGAACATGCC | + |
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Preference number: 1 (lower is better) Translates to: LPQGFSCLQVTLVSL*AGRPLGRILKTEHA Trigger: GGCATGTTCAGTTTTGAGAATTCTACCTAAAGGTCTCCCTGCCCACAGAGAAACTAGTGTTACTTGAAGACATGAAAATCCCTGTGGTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR GCA 90 bp | AAGATGAAGAAGATTCCAAAGAGGTTGAGAACCCAGGATAGAGTGTaGAAGAAATTCCAGCTTCTTGGTGTATACTCTGTGACAAAGAAA | + |
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Preference number: 1 (lower is better) Translates to: KMKKIPKRLRTQDRV*KKFQLLGVYSVTKK Trigger: TTTCTTTGTCACAGAGTATACACCAAGAAGCTGGAATTTCTTGCACACTCTATCCTGGGTTCTCAACCTCTTTGGAATCTTCTTCATCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR CCA 90 bp | TACTATAAAAACATATACACAACTCAGGATGGTCTTCCAGTACTCTaGGTCCAGTCTTCGAGCAGAATGTTTGTTTTTGCCATTCATGTA | + |
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Preference number: 1 (lower is better) Translates to: YYKNIYTTQDGLPVL*VQSSSRMFVFAIHV Trigger: TACATGAATGGCAAAAACAAACATTCTGCTCGAAGACTGGACCCAGAGTACTGGAAGACCATCCTGAGTTGTGTATATGTTTTTATAGTA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR CCA 90 bp | AATCTGAATTTATACGAATTAAGTTTTACAAAAAGATGTGTGTGGTaGTGTACACCTTTAATCCCAGCATGGGAGGCAAAGACAGGTGAT | + |
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Preference number: 1 (lower is better) Translates to: NLNLYELSFTKRCVW*CTPLIPAWEAKTGD Trigger: ATCACCTGTCTTTGCCTCCCATGCTGGGATTAAAGGTGTACACCACCACACACATCTTTTTGTAAAACTTAATTCGTATAAATTCAGATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR CCA 90 bp | TTTAGAATCAGGTATTTACTTATTACAACACTGTGCTTCAAGGTCTaGCTACCACAGGGATTTTCATGTCTTCAAGTAACACTAGTTTCT | + |
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Preference number: 1 (lower is better) Translates to: FRIRYLLITTLCFKV*LPQGFSCLQVTLVS Trigger: AGAAACTAGTGTTACTTGAAGACATGAAAATCCCTGTGGTAGCCAGACCTTGAAGCACAGTGTTGTAATAAGTAAATACCTGATTCTAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR-3UTR GCA 90 bp | TGCTGTCCTGGCACGGAGAGGGAGGTCACAAACATGGTAAAGCAGCGAAGCAAGAGCCACACAGCCACATaGTTGGTAGTCCAGCGGCGA | + |
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Preference number: 2 (lower is better) Translates to: CCPGTEREVTNMVKQRSKSHTAT*LVVQRR Trigger: TCGCCGCTGGACTACCAAGCATGTGGCTGTGTGGCT...CTTGCTTCGCTGCTTTACCATGTTTGTGACCTCCCTCTCCGTGCCAGGACAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR CAA 90 bp | CAGCACTACAGGAACACAGCCACCTCCCCTCAGGAGCCCTTTCTGTaGTTCACACTGAAGCTTCCGAACAGAAAGGGACAGCAACTGACG | + |
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Preference number: 2 (lower is better) Translates to: QHYRNTATSPQEPFL*FTLKLPNRKGQQLT Trigger: CGTCAGTTGCTGTCCCTTTCTGTTCGGAAGCTTCAGTGTGAACAACAGAAAGGGCTCCTGAGGGGAGGTGGCTGTGTTCCTGTAGTGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR-3UTR CCA 90 bp | CTGCAGGTGCTGTCCTGGCACGGAGAGGGAGGTCACAAACATGGTAAAGCAGCGGAATATATCTGGGAGTaGTGGGTAGGTCTGCATGTC | + |
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Preference number: 2 (lower is better) Translates to: LQVLSWHGEGGHKHGKAAEYIWE*WVGLHV Trigger: GACATGCAGACCTACCCACCACTCCCAGATATATTC...CGCTGCTTTACCATGTTTGTGACCTCCCTCTCCGTGCCAGGACAGCACCTGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR CAA 90 bp | CAGCCACACAGCCACATGCTTGGTAGTCCAGCGGCGAATGCAGAGTaGACTAGGACCTGCCATTTCTTTCTCTACTTCCCTTGGTTGCAG | + |
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Preference number: 2 (lower is better) Translates to: QPHSHMLGSPAANAE*TRTCHFFLYFPWLQ Trigger: CTGCAACCAAGGGAAGTAGAGAAAGAAATGGCAGGTCCTAGTCAACTCTGCATTCGCCGCTGGACTACCAAGCATGTGGCTGTGTGGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR-3UTR TCA 90 bp | ACTGATCAGAACTCAAGTCAGGGATGGGCCCATCACAGCTGTGTGTGGGCTCTCAGCCAGTCTGCACTCTaGAGAGCACTAAGGAATGGA | + |
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Preference number: 2 (lower is better) Translates to: TDQNSSQGWAHHSCVWALSQSAL*RALRNG Trigger: TCCATTCCTTAGTGCTCTTCAGAGTGCAGACTGGCT...GAGAGCCCACACACAGCTGTGATGGGCCCATCCCTGACTTGAGTTCTGATCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR CAA 90 bp | AATCCGTACAGCAGGCTGCTGTCAGGCACTCTCACCATCAATAGCTaGGCAAGGGCAACGCCAGCTGCACCTGTTTCCTATTGTGTTCTA | + |
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Preference number: 2 (lower is better) Translates to: NPYSRLLSGTLTINS*ARATPAAPVSYCVL Trigger: TAGAACACAATAGGAAACAGGTGCAGCTGGCGTTGCCCTTGCCAAGCTATTGATGGTGAGAGTGCCTGACAGCAGCCTGCTGTACGGATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR CAA 90 bp | CCGGCTGTGGCCTGCGTGAGACTGCAGTGCGCCTGCCTGCAGCTCTaGAGTCCTTGTTTGAAAATGGAACGTAAAGACTATACAATTAGT | + |
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Preference number: 2 (lower is better) Translates to: PAVACVRLQCACLQL*SPCLKMERKDYTIS Trigger: ACTAATTGTATAGTCTTTACGTTCCATTTTCAAACAAGGACTCAAGAGCTGCAGGCAGGCGCACTGCAGTCTCACGCAGGCCACAGCCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR-3UTR TCA 90 bp | GAAGCCTTTTTCTATCCACCCATGTCTCAGACTGTGTACTTTCCATGGTCGGGAGAAAGGGACAGCAACTaGCGCTGCACCTGCTCTGAA | + |
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Preference number: 2 (lower is better) Translates to: EAFFYPPMSQTVYFPWSGERDSN*RCTCSE Trigger: TTCAGAGCAGGTGCAGCGTCAGTTGCTGTCCCTTTC...TCCCGACCATGGAAAGTACACAGTCTGAGACATGGGTGGATAGAAAAAGGCTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR-3UTR TCA 90 bp | CACACACTTCCATATATCTTTCCAGTACACTGCAGGTGCTGTCCTGGCACGGAGTGTCTCCTAGGACTTTaGTTTCCAGAGGAGGAGAGC | + |
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Preference number: 2 (lower is better) Translates to: HTLPYIFPVHCRCCPGTECLLGL*FPEEES Trigger: GCTCTCCTCCTCTGGAAATCAAAGTCCTAGGAGACA...CTCCGTGCCAGGACAGCACCTGCAGTGTACTGGAAAGATATATGGAAGTGTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR-3UTR GCA 90 bp | CAGGATCCAAATGTAGCACAGAATCACGCCACACACTTCGGTCATGGAGAAGGCGTTACAGAGCCAGTCTaGACTCTGAAGAGCACTAAG | + |
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Preference number: 2 (lower is better) Translates to: QDPNVAQNHATHFGHGEGVTEPV*TLKSTK Trigger: CTTAGTGCTCTTCAGAGTGCAGACTGGCTCTGTAAC...GCCTTCTCCATGACCGAAGTGTGTGGCGTGATTCTGTGCTACATTTGGATCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR-3UTR TCA 90 bp | TCAGACTACAGAGCCTTCGCAGAAGGATTGACCTGTGCTTGTGAAGAAGAAGAACGGCGAATGCAGAGTTaGCTAGGACCTGCCATTTCT | + |
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Preference number: 2 (lower is better) Translates to: SDYRAFAEGLTCACEEEERRMQS*LGPAIS Trigger: AGAAATGGCAGGTCCTAGTCAACTCTGCATTCGCCG...TTCTTCTTCTTCACAAGCACAGGTCAATCCTTCTGCGAAGGCTCTGTAGTCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR-3UTR GCA 90 bp | TATCTTTCCAGTACACTGCAGGTGCTGTCCTGGCACGGAGAGGGAGGTCACAAAATTCCATCAAGGCGGTaGTTGTTGCATAAAATGTCC | + |
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Preference number: 2 (lower is better) Translates to: YLSSTLQVLSWHGEGGHKIPSRR*LLHKMS Trigger: GGACATTTTATGCAACAAGCACCGCCTTGATGGAAT...TTTGTGACCTCCCTCTCCGTGCCAGGACAGCACCTGCAGTGTACTGGAAAGATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR-3UTR TCA 90 bp | TCCACAAGTGTGGACGCCAGTCAGAGTCATTCCAAAGCCGCTCCAGATGGCAAATCAGGCACACGCTCATaGACAATAACCATAATGAAA | + |
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Preference number: 2 (lower is better) Translates to: STSVDASQSHSKAAPDGKSGTRS*TITIMK Trigger: TTTCATTATGGTTATTGTTCATGAGCGTGTGCCTGA...TTTGCCATCTGGAGCGGCTTTGGAATGACTCTGACTGGCGTCCACACTTGTGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR-3UTR GCA 90 bp | ATGTTCCTGAAAGACTACTTGCTCTCTGCTATAGAAGGATCCAGCACCCCTGTTAGCAAACACTCAGCATaGACAGGTATCGGCCTGACA | + |
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Preference number: 2 (lower is better) Translates to: MFLKDYLLSAIEGSSTPVSKHSA*TGIGLT Trigger: TGTCAGGCCGATACCTGTGCATGCTGAGTGTTTGCT...AACAGGGGTGCTGGATCCTTCTATAGCAGAGAGCAAGTAGTCTTTCAGGAACAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR-3UTR GCA 90 bp | TTACAGCACTACAGGAACACAGCCACCTCCCCTCAGGAGCCCTTTCTGTTGTTCGTAAGACACTCACTTTaGAGACAGACACAGATTAGT | + |
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Preference number: 2 (lower is better) Translates to: LQHYRNTATSPQEPFLLFVRHSL*RQTQIS Trigger: ACTAATCTGTGTCTGTCTGCAAAGTGAGTGTCTTAC...GAACAACAGAAAGGGCTCCTGAGGGGAGGTGGCTGTGTTCCTGTAGTGCTGTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR-3UTR GCA 90 bp | CACTTTTGCACAAATGTTCCTGAAAGACTACTTGCTCTCTGCTATAGAAGGATCAAAGCCGAGAGCACTTaGCTCGCACACACAGCCCTG | + |
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Preference number: 2 (lower is better) Translates to: HFCTNVPERLLALCYRRIKAEST*LAHTAL Trigger: CAGGGCTGTGTGTGCGAGGCAAGTGCTCTCGGCTTT...GATCCTTCTATAGCAGAGAGCAAGTAGTCTTTCAGGAACATTTGTGCAAAAGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR-3UTR CCA 90 bp | CGCTCCAGATGGCAAATGCCCGTCGTAGTTTCTCCCACACACTTCCATATATCTATACACAACTCAGGATaGTCTTCCAGTACTCTGGGT | + |
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Preference number: 2 (lower is better) Translates to: RSRWQMPVVVSPTHFHISIHNSG*SSSTLG Trigger: ACCCAGAGTACTGGAAGACCATCCTGAGTTGTGTAT...AGATATATGGAAGTGTGTGGGAGAAACTACGACGGGCATTTGCCATCTGGAGCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR-3UTR TCA 90 bp | GAAGCCTTTTTCTATCCACCCATGTCTCAGACTGTGTACTTTCCATGGTCGGGATTGTGTGTTCTTTCTTaGGTTTTACAGTCACGGCCT | + |
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Preference number: 2 (lower is better) Translates to: EAFFYPPMSQTVYFPWSGLCVLS*VLQSRP Trigger: AGGCCGTGACTGTAAAACTCAAGAAAGAACACACAA...TCCCGACCATGGAAAGTACACAGTCTGAGACATGGGTGGATAGAAAAAGGCTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR-3UTR TCA 90 bp | GAAGCCTTTTTCTATCCACCCATGTCTCAGACTGTGTACTTTCCATGGTCGGGACACAGATTAGTTCAATaGACACATGAGAACGGCTCA | + |
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Preference number: 2 (lower is better) Translates to: EAFFYPPMSQTVYFPWSGHRLVQ*THENGS Trigger: TGAGCCGTTCTCATGTGTTCATTGAACTAATCTGTG...TCCCGACCATGGAAAGTACACAGTCTGAGACATGGGTGGATAGAAAAAGGCTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR-3UTR GCA 90 bp | CCTGGCACGGAGAGGGAGGTCACAAACATGGTAAAGCAGCGAAGCAAGAATACATCAGTATGTATTTTCTaGAATTTTCGGACTGAGAGC | + |
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Preference number: 2 (lower is better) Translates to: PGTEREVTNMVKQRSKNTSVCIF*NFRTES Trigger: GCTCTCAGTCCGAAAATTGCAGAAAATACATACTGA...TGTATTCTTGCTTCGCTGCTTTACCATGTTTGTGACCTCCCTCTCCGTGCCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR CAA 90 bp | TATTCAGTCAGCGTGAGCAATGTGATTCCATCAAGGCGGTGCTTGTaGCATAAAATGTCCACATACTCAAAGAAACCTTCGTCCTTCAGC | + |
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Preference number: 2 (lower is better) Translates to: YSVSVSNVIPSRRCL*HKMSTYSKKPSSFS Trigger: GCTGAAGGACGAAGGTTTCTTTGAGTATGTGGACATTTTATGCAACAAGCACCGCCTTGATGGAATCACATTGCTCACGCTGACTGAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR CAA 90 bp | AATTTTCGGACTGAGAGCATTAACCGTTTAATGTCTCCTAGGACTTaGATTTCCAGAGGAGGAGAGCGGAGATCATATTCAGTCAGCGTG | + |
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Preference number: 2 (lower is better) Translates to: NFRTESINRLMSPRT*ISRGGERRSYSVSV Trigger: CACGCTGACTGAATATGATCTCCGCTCTCCTCCTCTGGAAATCAAAGTCCTAGGAGACATTAAACGGTTAATGCTCTCAGTCCGAAAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| 3UTR-3UTR TCA 90 bp | AAAGACCGTTCTTGTCTCCTAAGTCTGTCAGCTGAGAGGGCGACTATACTGTCTTGTGAGGACAAAACCTaGAAACTAATGTTGTCTCAG | + |
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Preference number: 2 (lower is better) Translates to: KDRSCLLSLSAERATILSCEDKT*KLMLSQ Trigger: CTGAGACAACATTAGTTTTCAGGTTTTGTCCTCACA...AGACAGTATAGTCGCCCTCTCAGCTGACAGACTTAGGAGACAAGAACGGTCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR-3UTR GCA 90 bp | TGGTTACAGCTCACGTTATTTAAATTGACTGGTTCTAAGATGAAGCCCATTGCTGACAAACCCCCTTCCTaGCTAATCCACTCAGTGGCT | + |
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Preference number: 2 (lower is better) Translates to: WLQLTLFKLTGSKMKPIADKPPS*LIHSVA Trigger: AGCCACTGAGTGGATTAGGCAGGAAGGGGGTTTGTC...AGCAATGGGCTTCATCTTAGAACCAGTCAATTTAAATAACGTGAGCTGTAACCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR-3UTR GCA 90 bp | ACACTGTGCTTCAAGGTCTGGCTACCACAGGGATTTTCATGTCTTCAAGTAACACAAAAACCCCTGACATaGTTTCTGCTTTCACGCTGT | + |
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Preference number: 2 (lower is better) Translates to: TLCFKVWLPQGFSCLQVTQKPLT*FLLSRC Trigger: ACAGCGTGAAAGCAGAAAGCATGTCAGGGGTTTTTG...TGTTACTTGAAGACATGAAAATCCCTGTGGTAGCCAGACCTTGAAGCACAGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR CAA 90 bp | TGCGTGAGACTGCAGTGCGCCTGCCTGCAGCTCTTGAGTCCTTGTTaGAAAATGGAACGTAAAGACTATACAATTAGTATTCCAATTCTA | + |
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Preference number: 2 (lower is better) Translates to: CVRLQCACLQLLSPC*KMERKDYTISIPIL Trigger: TAGAATTGGAATACTAATTGTATAGTCTTTACGTTCCATTTTCAAACAAGGACTCAAGAGCTGCAGGCAGGCGCACTGCAGTCTCACGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR-3UTR CCA 90 bp | CCACTTACAGTGTCAATGTTACGCTATTGGAAGTGTGGGTTTTCTTGGTTACAGACGTATCCAGGAGCCTaGGACAAAGTATTCATTTTC | + |
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Preference number: 2 (lower is better) Translates to: PLTVSMLRYWKCGFSWLQTYPGA*DKVFIF Trigger: GAAAATGAATACTTTGTCCCAGGCTCCTGGATACGT...CTGTAACCAAGAAAACCCACACTTCCAATAGCGTAACATTGACACTGTAAGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR-3UTR GCA 90 bp | CACTTACAGTGTCAATGTTACGCTATTGGAAGTGTGGGTTTTCTTGGTTACAGCCTCAAAACCTTTCCTTaGTTCTGTACTAAGCTGTCA | + |
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Preference number: 2 (lower is better) Translates to: HLQCQCYAIGSVGFLGYSLKTFP*FCTKLS Trigger: TGACAGCTTAGTACAGAAGCAAGGAAAGGTTTTGAG...GCTGTAACCAAGAAAACCCACACTTCCAATAGCGTAACATTGACACTGTAAGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR-3UTR GCA 90 bp | CACTTTTGCACAAATGTTCCTGAAAGACTACTTGCTCTCTGCTATAGAAGGATCAAAGAATTCTCTGCATaGACATTTACTCACTCACTG | + |
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Preference number: 2 (lower is better) Translates to: HFCTNVPERLLALCYRRIKEFSA*TFTHSL Trigger: CAGTGAGTGAGTAAATGTGCATGCAGAGAATTCTTT...GATCCTTCTATAGCAGAGAGCAAGTAGTCTTTCAGGAACATTTGTGCAAAAGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR CAA 90 bp | TATTGGAAGTGTGGGTTTTCTTGGTTACAGCTCACGTTATTTAAATaGACTGGTTCTAAGATGAAGCCCATTGCTTTAGAAAGGTTATTT | + |
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Preference number: 2 (lower is better) Translates to: YWKCGFSWLQLTLFK*TGSKMKPIALERLF Trigger: AAATAACCTTTCTAAAGCAATGGGCTTCATCTTAGAACCAGTCAATTTAAATAACGTGAGCTGTAACCAAGAAAACCCACACTTCCAATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR TCA 72 bp | CGGCCTGACATCACCCCACGCTGGGTCTTCCTACAGTaGGGGGCGGAAACTCTTTCCATGACCTCTCCATTC | + |
|
Preference number: 3 (lower is better) Translates to: RPDITPRWVFLQ*GAETLSMTSPF Trigger: GAATGGAGAGGTCATGGAAAGAGTTTCCGCCCCTCACTGTAGGAAGACCCAGCGTGGGGTGATGTCAGGCCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR TCA 72 bp | AACAGAAAGGGACAGCAACTGACGCTGCACCTGCTCTaGAATGCTGACCCCTGCATTAGTGGGAGGCCGGCG | + |
|
Preference number: 3 (lower is better) Translates to: NRKGQQLTLHLL*NADPCISGRPA Trigger: CGCCGGCCTCCCACTAATGCAGGGGTCAGCATTTCAGAGCAGGTGCAGCGTCAGTTGCTGTCCCTTTCTGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR GCA 72 bp | GGGAGGCCCGTTTGTCTATTAGACAAACCCCCTTCCTaGCTAATCCACTCAGTGGCTTCCAAGAGGTGGGAC | + |
|
Preference number: 3 (lower is better) Translates to: GRPVCLLDKPPS*LIHSVASKRWD Trigger: GTCCCACCTCTTGGAAGCCACTGAGTGGATTAGGCAGGAAGGGGGTTTGTCTAATAGACAAACGGGCCTCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR GCA 72 bp | GGAGTGACCCAAGGCCACTCAATCCGTACAGCAGGCTaGTGTCAGGCACTCTCACCATCAATAGCTTGGCAA | + |
|
Preference number: 3 (lower is better) Translates to: GVTQGHSIRTAG*CQALSPSIAWQ Trigger: TTGCCAAGCTATTGATGGTGAGAGTGCCTGACAGCAGCCTGCTGTACGGATTGAGTGGCCTTGGGTCACTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR CCA 72 bp | GCAGGCTGCTGTCAGGCACTCTCACCATCAATAGCTTaGCAAGGGCAACGCCAGCTGCACCTGTTTCCTATT | + |
|
Preference number: 3 (lower is better) Translates to: AGCCQALSPSIA*QGQRQLHLFPI Trigger: AATAGGAAACAGGTGCAGCTGGCGTTGCCCTTGCCAAGCTATTGATGGTGAGAGTGCCTGACAGCAGCCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR CCA 72 bp | AACTCAAGTCAGGGATGGGCCCATCACAGCTGTGTGTaGGCTCTCCGTTACAGAGCCAGTCTGCACTCTGAA | + |
|
Preference number: 3 (lower is better) Translates to: NSSQGWAHHSCV*ALRYRASLHSE Trigger: TTCAGAGTGCAGACTGGCTCTGTAACGGAGAGCCCACACACAGCTGTGATGGGCCCATCCCTGACTTGAGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
||
| 3UTR CCA 72 bp | GGACGCCAGTCAGAGTCATTCCAAAGCCGCTCCAGATaGCAAATGCCCGTCGTAGTTTCTCCCACACACTTC | + |
|
Preference number: 3 (lower is better) Translates to: GRQSESFQSRSR*QMPVVVSPTHF Trigger: GAAGTGTGTGGGAGAAACTACGACGGGCATTTGCCATCTGGAGCGGCTTTGGAATGACTCTGACTGGCGTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
||
| 3UTR GCA 72 bp | GTAGATCCTGTTTGCACTGTAAAAGCCGAGAGCACTTaGCTCGCACACACAGCCCTGGGCTTAACACCACAG | + |
|
Preference number: 3 (lower is better) Translates to: VDPVCTVKAEST*LAHTALGLTPQ Trigger: CTGTGGTGTTAAGCCCAGGGCTGTGTGTGCGAGGCAAGTGCTCTCGGCTTTTACAGTGCAAACAGGATCTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR GCA 72 bp | ACAGCTGTGTGTGGGCTCTCCGTTACAGAGCCAGTCTaGACTCTGAAGAGCACTAAGGAATGGAGTCATGGG | + |
|
Preference number: 3 (lower is better) Translates to: TAVCGLSVTEPV*TLKSTKEWSHG Trigger: CCCATGACTCCATTCCTTAGTGCTCTTCAGAGTGCAGACTGGCTCTGTAACGGAGAGCCCACACACAGCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
||
| 3UTR-3UTR CAA 90 bp | AGGAGAGCGGAGATCATATTCAGTCAGCGTGAGCAATGTGATTCCATCAAGGCGGCGGCGAATGCAGAGTaGACTAGGACCTGCCATTTC | + |
|
Preference number: 3 (lower is better) Translates to: RRAEIIFSQREQCDSIKAAANAE*TRTCHF Trigger: GAAATGGCAGGTCCTAGTCAACTCTGCATTCGCCGC...CGCCTTGATGGAATCACATTGCTCACGCTGACTGAATATGATCTCCGCTCTCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
||
| 3UTR-3UTR CAA 90 bp | TCTCCTAGGACTTTGATTTCCAGAGGAGGAGAGCGGAGATCATATTCAGTCAGCCACACAGCCACATGCTaGGTAGTCCAGCGGCGAATG | + |
|
Preference number: 3 (lower is better) Translates to: SPRTLISRGGERRSYSVSHTATC*VVQRRM Trigger: CATTCGCCGCTGGACTACCAAGCATGTGGCTGTGTG...GCTGACTGAATATGATCTCCGCTCTCCTCCTCTGGAAATCAAAGTCCTAGGAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
||
| 3UTR-3UTR CAA 90 bp | ACTGATCAGAACTCAAGTCAGGGATGGGCCCATCACAGCTGTGTGTGGGCTCTCTCAAGGCGGTGCTTGTaGCATAAAATGTCCACATAC | + |
|
Preference number: 3 (lower is better) Translates to: TDQNSSQGWAHHSCVWALSRRCL*HKMSTY Trigger: GTATGTGGACATTTTATGCAACAAGCACCGCCTTGA...GAGAGCCCACACACAGCTGTGATGGGCCCATCCCTGACTTGAGTTCTGATCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
||
| 3UTR TCA 72 bp | GCCACATGCTTGGTAGTCCAGCGGCGAATGCAGAGTTaGCTAGGACCTGCCATTTCTTTCTCTACTTCCCTT | + |
|
Preference number: 3 (lower is better) Translates to: ATCLVVQRRMQS*LGPAISFSTSL Trigger: AAGGGAAGTAGAGAAAGAAATGGCAGGTCCTAGTCAACTCTGCATTCGCCGCTGGACTACCAAGCATGTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
||
| 3UTR TCA 72 bp | TGTGTGGGCTCTCCGTTACAGAGCCAGTCTGCACTCTaGAGAGCACTAAGGAATGGAGTCATGGGACTCATA | + |
|
Preference number: 3 (lower is better) Translates to: CVGSPLQSQSAL*RALRNGVMGLI Trigger: TATGAGTCCCATGACTCCATTCCTTAGTGCTCTTCAGAGTGCAGACTGGCTCTGTAACGGAGAGCCCACACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
||
| 3UTR GCA 72 bp | CACACACTTCCATATATCTTTCCAGTACACTGCAGGTaGTGTCCTGGCACGGAGAGGGAGGTCACAAACATG | + |
|
Preference number: 3 (lower is better) Translates to: HTLPYIFPVHCR*CPGTEREVTNM Trigger: CATGTTTGTGACCTCCCTCTCCGTGCCAGGACAGCACCTGCAGTGTACTGGAAAGATATATGGAAGTGTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
||
| 3UTR-3UTR CAA 90 bp | CCTGGCACGGAGAGGGAGGTCACAAACATGGTAAAGCAGCGAAGCAAGAATACAATGTCTCCTAGGACTTaGATTTCCAGAGGAGGAGAG | + |
|
Preference number: 3 (lower is better) Translates to: PGTEREVTNMVKQRSKNTMSPRT*ISRGGE Trigger: CTCTCCTCCTCTGGAAATCAAAGTCCTAGGAGACAT...TGTATTCTTGCTTCGCTGCTTTACCATGTTTGTGACCTCCCTCTCCGTGCCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
||
| 3UTR-3UTR CAA 90 bp | GTGTGGACGCCAGTCAGAGTCATTCCAAAGCCGCTCCAGATGGCAAATGCCCGTCTTCGAGCAGAATGTTaGTTTTTGCCATTCATGTAC | + |
|
Preference number: 3 (lower is better) Translates to: VWTPVRVIPKPLQMANARLRAEC*FLPFMY Trigger: GTACATGAATGGCAAAAACAAACATTCTGCTCGAAG...ACGGGCATTTGCCATCTGGAGCGGCTTTGGAATGACTCTGACTGGCGTCCACAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
||
| 3UTR CCA 72 bp | TCCATATATCTTTCCAGTACACTGCAGGTGCTGTCCTaGCACGGAGAGGGAGGTCACAAACATGGTAAAGCA | + |
|
Preference number: 3 (lower is better) Translates to: SIYLSSTLQVLS*HGEGGHKHGKA Trigger: TGCTTTACCATGTTTGTGACCTCCCTCTCCGTGCCAGGACAGCACCTGCAGTGTACTGGAAAGATATATGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
||
| 3UTR CCA 72 bp | CCTTCCTGCCTAATCCACTCAGTGGCTTCCAAGAGGTaGGACTATGACTCCAACTGCAAAAATGACCATTCA | + |
|
Preference number: 3 (lower is better) Translates to: PSCLIHSVASKR*DYDSNCKNDHS Trigger: TGAATGGTCATTTTTGCAGTTGGAGTCATAGTCCCACCTCTTGGAAGCCACTGAGTGGATTAGGCAGGAAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR-3UTR CAA 90 bp | GAAGCCTTTTTCTATCCACCCATGTCTCAGACTGTGTACTTTCCATGGTCGGGACACTGCGCCTACAGCTaGTTCTGTTCTGTTTTGTTT | + |
|
Preference number: 3 (lower is better) Translates to: EAFFYPPMSQTVYFPWSGHCAYS*FCSVLF Trigger: AAACAAAACAGAACAGAACAAGCTGTAGGCGCAGTG...TCCCGACCATGGAAAGTACACAGTCTGAGACATGGGTGGATAGAAAAAGGCTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR TCA 72 bp | GAACTTGATTTTGATTGCTTTACCTCATCTCTCAGGTaGGAAATGAGCGCTGTCTCCAGCCTCCTCAGAGCA | + |
|
Preference number: 3 (lower is better) Translates to: ELDFDCFTSSLR*EMSAVSSLLRA Trigger: TGCTCTGAGGAGGCTGGAGACAGCGCTCATTTCTCACCTGAGAGATGAGGTAAAGCAATCAAAATCAAGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR TCA 72 bp | AGAAATTCAGCATGGTTAGAACAACTGTGTGGCCACTaGACATGTAGTCTCCACAAGTGTGGACGCCAGTCA | + |
|
Preference number: 3 (lower is better) Translates to: RNSAWLEQLCGH*TCSLHKCGRQS Trigger: TGACTGGCGTCCACACTTGTGGAGACTACATGTTCAGTGGCCACACAGTTGTTCTAACCATGCTGAATTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
||
| 3UTR-3UTR CAA 90 bp | CACTTTTGCACAAATGTTCCTGAAAGACTACTTGCTCTCTGCTATAGAAGGATCCAGGAGCCCTTTCTGTaGTTCACACTGAAGCTTCCG | + |
|
Preference number: 3 (lower is better) Translates to: HFCTNVPERLLALCYRRIQEPFL*FTLKLP Trigger: CGGAAGCTTCAGTGTGAACAACAGAAAGGGCTCCTG...GATCCTTCTATAGCAGAGAGCAAGTAGTCTTTCAGGAACATTTGTGCAAAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR-3UTR CAA 90 bp | CACTTTTGCACAAATGTTCCTGAAAGACTACTTGCTCTCTGCTATAGAAGGATCCCCAAGCTGATGTGCTaGAGTTCCGTAAGCAAACAC | + |
|
Preference number: 3 (lower is better) Translates to: HFCTNVPERLLALCYRRIPKLMC*SSVSKH Trigger: GTGTTTGCTTACGGAACTCAAGCACATCAGCTTGGG...GATCCTTCTATAGCAGAGAGCAAGTAGTCTTTCAGGAACATTTGTGCAAAAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR-3UTR CAA 90 bp | ACACTGTGCTTCAAGGTCTGGCTACCACAGGGATTTTCATGTCTTCAAGTAACAAATGTTCTGTTCTGGTaGGCATCAGATGGAGATGGT | + |
|
Preference number: 3 (lower is better) Translates to: TLCFKVWLPQGFSCLQVTNVLFW*ASDGDG Trigger: ACCATCTCCATCTGATGCCAACCAGAACAGAACATT...TGTTACTTGAAGACATGAAAATCCCTGTGGTAGCCAGACCTTGAAGCACAGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR TCA 72 bp | GACACTCACTTTGCAGACAGACACAGATTAGTTCAATaGACACATGAGAACGGCTCACTAGGTAAGGAAAGC | + |
|
Preference number: 3 (lower is better) Translates to: DTHFADRHRLVQ*THENGSLGKES Trigger: GCTTTCCTTACCTAGTGAGCCGTTCTCATGTGTTCATTGAACTAATCTGTGTCTGTCTGCAAAGTGAGTGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR-3UTR CAA 90 bp | ACACTGTGCTTCAAGGTCTGGCTACCACAGGGATTTTCATGTCTTCAAGTAACATGCACCTGTTTCCTATaGTGTTCTATGATAGAACCC | + |
|
Preference number: 3 (lower is better) Translates to: TLCFKVWLPQGFSCLQVTCTCFL*CSMIEP Trigger: GGGTTCTATCATAGAACACAATAGGAAACAGGTGCA...TGTTACTTGAAGACATGAAAATCCCTGTGGTAGCCAGACCTTGAAGCACAGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR CCA 72 bp | TTCTATCCACCCATGTCTCAGACTGTGTACTTTCCATaGTCGGGAATGAGAACTTTCAGGGAAAAACAACAA | + |
|
Preference number: 3 (lower is better) Translates to: FYPPMSQTVYFP*SGMRTFREKQQ Trigger: TTGTTGTTTTTCCCTGAAAGTTCTCATTCCCGACCATGGAAAGTACACAGTCTGAGACATGGGTGGATAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR TCA 72 bp | TGTTATGTAAAGTTGCCATTAAACCTGATATGCTTGTaGGTTTCAGGACAGTCAGGGCTATACAGAGAAACC | + |
|
Preference number: 3 (lower is better) Translates to: CYVKLPLNLICL*VSGQSGLYRET Trigger: GGTTTCTCTGTATAGCCCTGACTGTCCTGAAACTCACAAGCATATCAGGTTTAATGGCAACTTTACATAACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR CCA 72 bp | GGATTTTCATGTCTTCAAGTAACACTAGTTTCTCTGTaGGCAGGGAGACCTTTAGGTAGAATTCTCAAAACT | + |
|
Preference number: 3 (lower is better) Translates to: GFSCLQVTLVSL*AGRPLGRILKT Trigger: AGTTTTGAGAATTCTACCTAAAGGTCTCCCTGCCCACAGAGAAACTAGTGTTACTTGAAGACATGAAAATCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR-3UTR CAA 90 bp | CAGCTTCTTGGTGTATACTCTGTGACAAAGAAATTCAGCATGGTTAGAACAACTGCAGAATGTTTGTTTTaGCCATTCATGTACTGGTAC | + |
|
Preference number: 3 (lower is better) Translates to: QLLGVYSVTKKFSMVRTTAECLF*PFMYWY Trigger: GTACCAGTACATGAATGGCAAAAACAAACATTCTGC...AGTTGTTCTAACCATGCTGAATTTCTTTGTCACAGAGTATACACCAAGAAGCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
||
| 3UTR TCA 72 bp | TCACTAGGTAAGGAAAGCCAGCTTCAGAAATATTCTTaGCTTGAGTCCTACTGGGAATCAGTAACAATTCTT | + |
|
Preference number: 3 (lower is better) Translates to: SLGKESQLQKYS*LESYWESVTIL Trigger: AAGAATTGTTACTGATTCCCAGTAGGACTCAAGTCAAGAATATTTCTGAAGCTGGCTTTCCTTACCTAGTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR CCA 72 bp | TTATACGAATTAAGTTTTACAAAAAGATGTGTGTGGTaGTGTACACCTTTAATCCCAGCATGGGAGGCAAAG | + |
|
Preference number: 3 (lower is better) Translates to: LYELSFTKRCVW*CTPLIPAWEAK Trigger: CTTTGCCTCCCATGCTGGGATTAAAGGTGTACACCACCACACACATCTTTTTGTAAAACTTAATTCGTATAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR CCA 72 bp | TCTCCCATCAAAGCACAAAGCTTCCTTATGCCAAGATaGGAAATTCACAGAATAAAGAGTCCTTTGATTAAC | + |
|
Preference number: 3 (lower is better) Translates to: SPIKAQSFLMPR*EIHRIKSPLIN Trigger: GTTAATCAAAGGACTCTTTATTCTGTGAATTTCCCATCTTGGCATAAGGAAGCTTTGTGCTTTGATGGGAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR CAA 72 bp | AGCAGGCTGCTGTCAGGCACTCTCACCATCAATAGCTaGGCAAGGGCAACGCCAGCTGCACCTGTTTCCTAT | + |
|
Preference number: 4 (lower is better) Translates to: SRLLSGTLTINS*ARATPAAPVSY Trigger: ATAGGAAACAGGTGCAGCTGGCGTTGCCCTTGCCAAGCTATTGATGGTGAGAGTGCCTGACAGCAGCCTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| CDS-3UTR GCA 90 bp | GGAAACCTGTCAACACAGAAGCCAAATGCAACGTATCCAGGAGCCTGGGACAAAAGCCACACAGCCACATaGTTGGTAGTCCAGCGGCGA | + |
|
Preference number: 4 (lower is better) Translates to: GNLSTQKPNATYPGAWDKSHTAT*LVVQRR Trigger: TCGCCGCTGGACTACCAAGCATGTGGCTGTGTGGCT...TTTGTCCCAGGCTCCTGGATACGTTGCATTTGGCTTCTGTGTTGACAGGTTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| CDS-3UTR GCA 90 bp | ATGTTCCTGAAAGACTACTTGCTCTCTGCTATAGAAGGATCCAGCACCCCTGTTCCAGTACACTGCAGGTaGTGTCCTGGCACGGAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: MFLKDYLLSAIEGSSTPVPVHCR*CPGTER Trigger: CCTCTCCGTGCCAGGACAGCACCTGCAGTGTACTGG...AACAGGGGTGCTGGATCCTTCTATAGCAGAGAGCAAGTAGTCTTTCAGGAACAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR CAA 72 bp | GCCTGCGTGAGACTGCAGTGCGCCTGCCTGCAGCTCTaGAGTCCTTGTTTGAAAATGGAACGTAAAGACTAT | + |
|
Preference number: 4 (lower is better) Translates to: ACVRLQCACLQL*SPCLKMERKDY Trigger: ATAGTCTTTACGTTCCATTTTCAAACAAGGACTCAAGAGCTGCAGGCAGGCGCACTGCAGTCTCACGCAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| 3UTR CAA 72 bp | AGCCACATGCTTGGTAGTCCAGCGGCGAATGCAGAGTaGACTAGGACCTGCCATTTCTTTCTCTACTTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: SHMLGSPAANAE*TRTCHFFLYFP Trigger: AGGGAAGTAGAGAAAGAAATGGCAGGTCCTAGTCAACTCTGCATTCGCCGCTGGACTACCAAGCATGTGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
||
| CDS-3UTR CCA 90 bp | TTACAGCACTACAGGAACACAGCCACCTCCCCTCAGGAGCCCTTTCTGTTGTTCATACACAACTCAGGATaGTCTTCCAGTACTCTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: LQHYRNTATSPQEPFLLFIHNSG*SSSTLG Trigger: ACCCAGAGTACTGGAAGACCATCCTGAGTTGTGTAT...GAACAACAGAAAGGGCTCCTGAGGGGAGGTGGCTGTGTTCCTGTAGTGCTGTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| CDS-3UTR TCA 90 bp | AAAGACCGTTCTTGTCTCCTAAGTCTGTCAGCTGAGAGGGCGACTATACTGTCTAGCCAGTCTGCACTCTaGAGAGCACTAAGGAATGGA | + |
|
Preference number: 4 (lower is better) Translates to: KDRSCLLSLSAERATILSSQSAL*RALRNG Trigger: TCCATTCCTTAGTGCTCTTCAGAGTGCAGACTGGCT...AGACAGTATAGTCGCCCTCTCAGCTGACAGACTTAGGAGACAAGAACGGTCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| CDS-3UTR TCA 90 bp | GAAGCCTTTTTCTATCCACCCATGTCTCAGACTGTGTACTTTCCATGGTCGGGACAACTGTGTGGCCACTaGACATGTAGTCTCCACAAG | + |
|
Preference number: 4 (lower is better) Translates to: EAFFYPPMSQTVYFPWSGQLCGH*TCSLHK Trigger: CTTGTGGAGACTACATGTTCAGTGGCCACACAGTTG...TCCCGACCATGGAAAGTACACAGTCTGAGACATGGGTGGATAGAAAAAGGCTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| CDS-3UTR CCA 90 bp | GGAAACCTGTCAACACAGAAGCCAAATGCAACGTATCCAGGAGCCTGGGACAAAGAATATATCTGGGAGTaGTGGGTAGGTCTGCATGTC | + |
|
Preference number: 4 (lower is better) Translates to: GNLSTQKPNATYPGAWDKEYIWE*WVGLHV Trigger: GACATGCAGACCTACCCACCACTCCCAGATATATTC...TTTGTCCCAGGCTCCTGGATACGTTGCATTTGGCTTCTGTGTTGACAGGTTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| CDS-3UTR CCA 90 bp | TGGTTACAGCTCACGTTATTTAAATTGACTGGTTCTAAGATGAAGCCCATTGCTCTGCAGGTGCTGTCCTaGCACGGAGAGGGAGGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: WLQLTLFKLTGSKMKPIALQVLS*HGEGGH Trigger: GTGACCTCCCTCTCCGTGCCAGGACAGCACCTGCAG...AGCAATGGGCTTCATCTTAGAACCAGTCAATTTAAATAACGTGAGCTGTAACCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| CDS-3UTR TCA 90 bp | GGCGGAAACTCTTTCCATGACCTCTCCATTCAAACAGCTAATAAGGAGTCTTGTTGTCTCCTAGGACTTTaGTTTCCAGAGGAGGAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: GGNSFHDLSIQTANKESCCLLGL*FPEEES Trigger: GCTCTCCTCCTCTGGAAATCAAAGTCCTAGGAGACA...ACAAGACTCCTTATTAGCTGTTTGAATGGAGAGGTCATGGAAAGAGTTTCCGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| CDS-3UTR GCA 90 bp | AAAGACCGTTCTTGTCTCCTAAGTCTGTCAGCTGAGAGGGCGACTATACTGTCTATTCCATCAAGGCGGTaGTTGTTGCATAAAATGTCC | + |
|
Preference number: 4 (lower is better) Translates to: KDRSCLLSLSAERATILSIPSRR*LLHKMS Trigger: GGACATTTTATGCAACAAGCACCGCCTTGATGGAAT...AGACAGTATAGTCGCCCTCTCAGCTGACAGACTTAGGAGACAAGAACGGTCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| CDS-3UTR GCA 90 bp | GGCGGAAACTCTTTCCATGACCTCTCCATTCAAACAGCTAATAAGGAGTCTTGTGTTACAGAGCCAGTCTaGACTCTGAAGAGCACTAAG | + |
|
Preference number: 4 (lower is better) Translates to: GGNSFHDLSIQTANKESCVTEPV*TLKSTK Trigger: CTTAGTGCTCTTCAGAGTGCAGACTGGCTCTGTAAC...ACAAGACTCCTTATTAGCTGTTTGAATGGAGAGGTCATGGAAAGAGTTTCCGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| CDS-3UTR GCA 90 bp | GGCGGAAACTCTTTCCATGACCTCTCCATTCAAACAGCTAATAAGGAGTCTTGTGAAGCAAGAATACAGTaGCCATCAGACTACAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: GGNSFHDLSIQTANKESCEARIQ*PSDYRA Trigger: GGCTCTGTAGTCTGATGGGCACTGTATTCTTGCTTC...ACAAGACTCCTTATTAGCTGTTTGAATGGAGAGGTCATGGAAAGAGTTTCCGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
||
| CDS-3UTR TCA 90 bp | ATGTTCCTGAAAGACTACTTGCTCTCTGCTATAGAAGGATCCAGCACCCCTGTTTCAGGCACACGCTCATaGACAATAACCATAATGAAA | + |
|
Preference number: 4 (lower is better) Translates to: MFLKDYLLSAIEGSSTPVSGTRS*TITIMK Trigger: TTTCATTATGGTTATTGTTCATGAGCGTGTGCCTGA...AACAGGGGTGCTGGATCCTTCTATAGCAGAGAGCAAGTAGTCTTTCAGGAACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| CDS-3UTR CCA 90 bp | TGGTTACAGCTCACGTTATTTAAATTGACTGGTTCTAAGATGAAGCCCATTGCTTATATCTGGGAGTGGTaGGTAGGTCTGCATGTCAGG | + |
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Preference number: 4 (lower is better) Translates to: WLQLTLFKLTGSKMKPIAYIWEW*VGLHVR Trigger: CCTGACATGCAGACCTACCCACCACTCCCAGATATA...AGCAATGGGCTTCATCTTAGAACCAGTCAATTTAAATAACGTGAGCTGTAACCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR CAA 72 bp | CTGCAGTGCGCCTGCCTGCAGCTCTTGAGTCCTTGTTaGAAAATGGAACGTAAAGACTATACAATTAGTATT | + |
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Preference number: 4 (lower is better) Translates to: LQCACLQLLSPC*KMERKDYTISI Trigger: AATACTAATTGTATAGTCTTTACGTTCCATTTTCAAACAAGGACTCAAGAGCTGCAGGCAGGCGCACTGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR CAA 72 bp | AGAAAGGTTATTTTTGCCACAGCAACTCTGGCCTCGTaGGGAAGTGTAACACAAAGGTTTCTGCCAAAACTA | + |
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Preference number: 4 (lower is better) Translates to: RKVIFATATLAS*GSVTQRFLPKL Trigger: TAGTTTTGGCAGAAACCTTTGTGTTACACTTCCCAACGAGGCCAGAGTTGCTGTGGCAAAAATAACCTTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR CAA 72 bp | ACTGAGAGCATTAACCGTTTAATGTCTCCTAGGACTTaGATTTCCAGAGGAGGAGAGCGGAGATCATATTCA | + |
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Preference number: 4 (lower is better) Translates to: TESINRLMSPRT*ISRGGERRSYS Trigger: TGAATATGATCTCCGCTCTCCTCCTCTGGAAATCAAAGTCCTAGGAGACATTAAACGGTTAATGCTCTCAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| CDS-3UTR TCA 90 bp | TGGTTACAGCTCACGTTATTTAAATTGACTGGTTCTAAGATGAAGCCCATTGCTCATGGGCAGCCAAGATaGAGAAGATTCCAAAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: WLQLTLFKLTGSKMKPIAHGQPR*RRFQRG Trigger: ACCTCTTTGGAATCTTCTTCATCTTGGCTGCCCATG...AGCAATGGGCTTCATCTTAGAACCAGTCAATTTAAATAACGTGAGCTGTAACCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR CAA 72 bp | TTCAAACAGCTAATAAGGAGTCTTGTGTGTTCTTTCTaGAGTTTTACAGTCACGGCCTTTCTCAGAACGGGA | + |
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Preference number: 4 (lower is better) Translates to: FKQLIRSLVCSF*SFTVTAFLRTG Trigger: TCCCGTTCTGAGAAAGGCCGTGACTGTAAAACTCAAGAAAGAACACACAAGACTCCTTATTAGCTGTTTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| CDS-3UTR TCA 90 bp | TGGTTACAGCTCACGTTATTTAAATTGACTGGTTCTAAGATGAAGCCCATTGCTAGATTCCAAAGAGGTTaGGAACCCAGGATAGAGTGT | + |
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Preference number: 4 (lower is better) Translates to: WLQLTLFKLTGSKMKPIARFQRG*EPRIEC Trigger: ACACTCTATCCTGGGTTCTCAACCTCTTTGGAATCT...AGCAATGGGCTTCATCTTAGAACCAGTCAATTTAAATAACGTGAGCTGTAACCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| CDS-3UTR GCA 90 bp | CACTTTTGCACAAATGTTCCTGAAAGACTACTTGCTCTCTGCTATAGAAGGATCTCAGTATGTATTTTCTaGAATTTTCGGACTGAGAGC | + |
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Preference number: 4 (lower is better) Translates to: HFCTNVPERLLALCYRRISVCIF*NFRTES Trigger: GCTCTCAGTCCGAAAATTGCAGAAAATACATACTGA...GATCCTTCTATAGCAGAGAGCAAGTAGTCTTTCAGGAACATTTGTGCAAAAGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| CDS-3UTR CCA 90 bp | TGGTTACAGCTCACGTTATTTAAATTGACTGGTTCTAAGATGAAGCCCATTGCTGAAATTCCAGCTTCTTaGTGTATACTCTGTGACAAA | + |
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Preference number: 4 (lower is better) Translates to: WLQLTLFKLTGSKMKPIAEIPAS*CILCDK Trigger: TTTGTCACAGAGTATACACCAAGAAGCTGGAATTTC...AGCAATGGGCTTCATCTTAGAACCAGTCAATTTAAATAACGTGAGCTGTAACCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| 3UTR CAA 72 bp | TGTGGGTTTTCTTGGTTACAGCTCACGTTATTTAAATaGACTGGTTCTAAGATGAAGCCCATTGCTTTAGAA | + |
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Preference number: 4 (lower is better) Translates to: CGFSWLQLTLFK*TGSKMKPIALE Trigger: TTCTAAAGCAATGGGCTTCATCTTAGAACCAGTCAATTTAAATAACGTGAGCTGTAACCAAGAAAACCCACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| CDS GCA 90 bp | GACCTGCCATTTCTTTCTCTACTTCCTCCGCGGTGGGAGCCGGGCTaGCGGGACCCAGCTCGGAGCCGGTGTCTAAGTCGCCGTTGGAGT | + |
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Preference number: 5 (lower is better) Translates to: DLPFLSLLPPRWEPG*RDPARSRCLSRRWS Trigger: ACTCCAACGGCGACTTAGACACCGGCTCCGAGCTGGGTCCCGGCAGCCCGGCTCCCACCGCGGAGGAAGTAGAGAAAGAAATGGCAGGTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022292.10 |
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| CDS GCA 90 bp | CACATGCTTGGTAGTCCAGCGGCGAATGCAGAGTTGACTAGGACCTaGCATTTCTTTCTCTACTTCCTCCGCGGTGGGAGCCGGGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: HMLGSPAANAELTRT*HFFLYFLRGGSRAA Trigger: GGCAGCCCGGCTCCCACCGCGGAGGAAGTAGAGAAAGAAATGGCAGGTCCTAGTCAACTCTGCATTCGCCGCTGGACTACCAAGCATGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022292.10 |
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| CDS-3UTR CAA 90 bp | AAAGACCGTTCTTGTCTCCTAAGTCTGTCAGCTGAGAGGGCGACTATACTGTCTCACACAGCCACATGCTaGGTAGTCCAGCGGCGAATG | + |
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Preference number: 5 (lower is better) Translates to: KDRSCLLSLSAERATILSHTATC*VVQRRM Trigger: CATTCGCCGCTGGACTACCAAGCATGTGGCTGTGTG...AGACAGTATAGTCGCCCTCTCAGCTGACAGACTTAGGAGACAAGAACGGTCTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| CDS-3UTR CAA 90 bp | TTACAGCACTACAGGAACACAGCCACCTCCCCTCAGGAGCCCTTTCTGTTGTTCGCCTTCGCAGAAGGATaGACCTGTGCTTGTGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: LQHYRNTATSPQEPFLLFAFAEG*TCACEE Trigger: TTCTTCACAAGCACAGGTCAATCCTTCTGCGAAGGC...GAACAACAGAAAGGGCTCCTGAGGGGAGGTGGCTGTGTTCCTGTAGTGCTGTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| CDS-3UTR CAA 90 bp | ATGTTCCTGAAAGACTACTTGCTCTCTGCTATAGAAGGATCCAGCACCCCTGTTCCATCAAGGCGGTGCTaGTTGCATAAAATGTCCACA | + |
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Preference number: 5 (lower is better) Translates to: MFLKDYLLSAIEGSSTPVPSRRC*LHKMST Trigger: TGTGGACATTTTATGCAACAAGCACCGCCTTGATGG...AACAGGGGTGCTGGATCCTTCTATAGCAGAGAGCAAGTAGTCTTTCAGGAACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| CDS-3UTR CAA 90 bp | GAAGCCTTTTTCTATCCACCCATGTCTCAGACTGTGTACTTTCCATGGTCGGGAAAGATTCCAAAGAGGTaGAGAACCCAGGATAGAGTG | + |
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Preference number: 5 (lower is better) Translates to: EAFFYPPMSQTVYFPWSGKIPKR*RTQDRV Trigger: CACTCTATCCTGGGTTCTCAACCTCTTTGGAATCTT...TCCCGACCATGGAAAGTACACAGTCTGAGACATGGGTGGATAGAAAAAGGCTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| CDS-3UTR CAA 90 bp | CACTTTTGCACAAATGTTCCTGAAAGACTACTTGCTCTCTGCTATAGAAGGATCATGTCTCCTAGGACTTaGATTTCCAGAGGAGGAGAG | + |
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Preference number: 5 (lower is better) Translates to: HFCTNVPERLLALCYRRIMSPRT*ISRGGE Trigger: CTCTCCTCCTCTGGAAATCAAAGTCCTAGGAGACAT...GATCCTTCTATAGCAGAGAGCAAGTAGTCTTTCAGGAACATTTGTGCAAAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| CDS-3UTR CAA 90 bp | TGGTTACAGCTCACGTTATTTAAATTGACTGGTTCTAAGATGAAGCCCATTGCTTCAAGGCGGTGCTTGTaGCATAAAATGTCCACATAC | + |
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Preference number: 5 (lower is better) Translates to: WLQLTLFKLTGSKMKPIASRRCL*HKMSTY Trigger: GTATGTGGACATTTTATGCAACAAGCACCGCCTTGA...AGCAATGGGCTTCATCTTAGAACCAGTCAATTTAAATAACGTGAGCTGTAACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| CDS-3UTR CAA 90 bp | CCACTTACAGTGTCAATGTTACGCTATTGGAAGTGTGGGTTTTCTTGGTTACAGGCAGAATGTTTGTTTTaGCCATTCATGTACTGGTAC | + |
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Preference number: 5 (lower is better) Translates to: PLTVSMLRYWKCGFSWLQAECLF*PFMYWY Trigger: GTACCAGTACATGAATGGCAAAAACAAACATTCTGC...CTGTAACCAAGAAAACCCACACTTCCAATAGCGTAACATTGACACTGTAAGTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| CDS-3UTR CAA 90 bp | AAACAGCTAATAAGGAGTCTTGTGTGTTCTTTCTTGAGTTTTACAGTCACGGCCCTTCGAGCAGAATGTTaGTTTTTGCCATTCATGTAC | + |
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Preference number: 5 (lower is better) Translates to: KQLIRSLVCSFLSFTVTALRAEC*FLPFMY Trigger: GTACATGAATGGCAAAAACAAACATTCTGCTCGAAG...GGCCGTGACTGTAAAACTCAAGAAAGAACACACAAGACTCCTTATTAGCTGTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119430.3 |
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| CDS GCA 72 bp | CTCGGCGCCCGCTCACCTCCGCGGTGGGAGCCGGGCTaGCGGGACCCAGCTCGGAGCCGGTGTCTAAGTCGC | + |
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Preference number: 6 (lower is better) Translates to: LGARSPPRWEPG*RDPARSRCLSR Trigger: GCGACTTAGACACCGGCTCCGAGCTGGGTCCCGGCAGCCCGGCTCCCACCGCGGAGGTGAGCGGGCGCCGAG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144061.2 |
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| CDS GCA 72 bp | GGTAGTCCAGCGGCGAATGCAGAGTTGACTAGGACCTaGCATTTCTTTCTCTACTTCCTCCGCGGTGGGAGC | + |
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Preference number: 6 (lower is better) Translates to: GSPAANAELTRT*HFFLYFLRGGS Trigger: GCTCCCACCGCGGAGGAAGTAGAGAAAGAAATGGCAGGTCCTAGTCAACTCTGCATTCGCCGCTGGACTACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022292.10 |
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| CDS CAA 72 bp | AGCCACATGCTTGGTAGTCCAGCGGCGAATGCAGAGTaGACTAGGACCTGCCATTTCTTTCTCTACTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: SHMLGSPAANAE*TRTCHFFLYFL Trigger: GAGGAAGTAGAGAAAGAAATGGCAGGTCCTAGTCAACTCTGCATTCGCCGCTGGACTACCAAGCATGTGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022292.10 |
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