Pregenerated sensors for SAMD13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048652Ensembl transcript IDs: ENSMUST00000124931.8, ENSMUST00000125965.8, ENSMUST00000147113.2, ENSMUST00000197989.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTCCAGTGCAAAACAAGTCTCTCTCCTCAGAGAGAGTTCTGCTCCTaGAGAGGGGGTCTAGTGCGTGCTCGATTCAAACACAGCGCAGCA | + |
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Preference number: 1 (lower is better) Translates to: LQCKTSLSPQREFCS*RGGLVRARFKHSAA Trigger: TGCTGCGCTGTGTTTGAATCGAGCACGCACTAGACCCCCTCTTCAGGAGCAGAACTCTCTCTGAGGAGAGAGACTTGTTTTGCACTGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| 3UTR TCA 90 bp | CAAGGACAACTATCTTACATCCGCTCTGTTTTTGCTCCTCCAGGCTaGGTCAGGCCAGCTGATGGATTGCCTAGTCTATCCAATAGGATA | + |
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Preference number: 1 (lower is better) Translates to: QGQLSYIRSVFAPPG*VRPADGLPSLSNRI Trigger: TATCCTATTGGATAGACTAGGCAATCCATCAGCTGGCCTGACTCAGCCTGGAGGAGCAAAAACAGAGCGGATGTAAGATAGTTGTCCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| 3UTR TCA 90 bp | GTGTCTCTTGGAACAGAGATGGAGCAAACCTACTTCTTCAAGTTCTaGAAGATAGGTACTCAAACCAGGGACCAAACACAGCAGTGGACA | + |
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Preference number: 1 (lower is better) Translates to: VSLGTEMEQTYFFKF*KIGTQTRDQTQQWT Trigger: TGTCCACTGCTGTGTTTGGTCCCTGGTTTGAGTACCTATCTTTCAGAACTTGAAGAAGTAGGTTTGCTCCATCTCTGTTCCAAGAGACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| 3UTR CCA 90 bp | CCAGCTGATGGATTGCCTAGTCTATCCAATAGGATAACACTTTGTTaGATCGAAATTCCTTACGTACGCACATCTATGTATTCCGTTTGC | + |
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Preference number: 1 (lower is better) Translates to: PADGLPSLSNRITLC*IEIPYVRTSMYSVC Trigger: GCAAACGGAATACATAGATGTGCGTACGTAAGGAATTTCGATCCAACAAAGTGTTATCCTATTGGATAGACTAGGCAATCCATCAGCTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| 3UTR GCA 90 bp | TGTTGGATCGAAATTCCTTACGTACGCACATCTATGTATTCCGTTTaGAGAGTTTCACAACATGAAACTAAATTACAACCCAGTGTGTTT | + |
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Preference number: 1 (lower is better) Translates to: CWIEIPYVRTSMYSV*RVSQHETKLQPSVF Trigger: AAACACACTGGGTTGTAATTTAGTTTCATGTTGTGAAACTCTGCAAACGGAATACATAGATGTGCGTACGTAAGGAATTTCGATCCAACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| 3UTR-3UTR TCA 90 bp | CTCCTCCAGGCTGAGTCAGGCCAGCTGATGGATTGCCTAGTCTATCCAATAGGACAACCCAGTGTGTTTTaGCTGAGACCTCAGTTTGAT | + |
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Preference number: 2 (lower is better) Translates to: LLQAESGQLMDCLVYPIGQPSVF*LRPQFD Trigger: ATCAAACTGAGGTCTCAGTCAAAACACACTGGGTTG...TCCTATTGGATAGACTAGGCAATCCATCAGCTGGCCTGACTCAGCCTGGAGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| 3UTR-3UTR TCA 90 bp | CTCCTCCAGGCTGAGTCAGGCCAGCTGATGGATTGCCTAGTCTATCCAATAGGACCAGTGTGTTTTGACTaGGACCTCAGTTTGATTTTA | + |
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Preference number: 2 (lower is better) Translates to: LLQAESGQLMDCLVYPIGPVCFD*DLSLIL Trigger: TAAAATCAAACTGAGGTCTCAGTCAAAACACACTGG...TCCTATTGGATAGACTAGGCAATCCATCAGCTGGCCTGACTCAGCCTGGAGGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| 3UTR CAA 90 bp | GGAACTGACGTAAGCAGGAAATATTCTTACCCCGGTGACAGTGAGTaGATCACGATAGATATCTCCAGTGCAAAACAAGTCTCTCTCCTC | + |
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Preference number: 2 (lower is better) Translates to: GTDVSRKYSYPGDSE*ITIDISSAKQVSLL Trigger: GAGGAGAGAGACTTGTTTTGCACTGGAGATATCTATCGTGATCAACTCACTGTCACCGGGGTAAGAATATTTCCTGCTTACGTCAGTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| 3UTR-3UTR GCA 90 bp | TTTTTGCTCCTCCAGGCTGAGTCAGGCCAGCTGATGGATTGCCTAGTCTATCCATCTATGTATTCCGTTTaGAGAGTTTCACAACATGAA | + |
|
Preference number: 2 (lower is better) Translates to: FLLLQAESGQLMDCLVYPSMYSV*RVSQHE Trigger: TTCATGTTGTGAAACTCTGCAAACGGAATACATAGA...TGGATAGACTAGGCAATCCATCAGCTGGCCTGACTCAGCCTGGAGGAGCAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| 3UTR CAA 90 bp | CACCAACTTGATGAGACATGGCCATACATCACTCATAAGTGTCTCTaGGAACAGAGATGGAGCAAACCTACTTCTTCAAGTTCTGAAAGA | + |
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Preference number: 2 (lower is better) Translates to: HQLDETWPYITHKCL*EQRWSKPTSSSSER Trigger: TCTTTCAGAACTTGAAGAAGTAGGTTTGCTCCATCTCTGTTCCAAGAGACACTTATGAGTGATGTATGGCCATGTCTCATCAAGTTGGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| 3UTR-3UTR GCA 90 bp | ATGAGACATGGCCATACATCACTCATAAGTGTCTCTTGGAACAGAGATGGAGCATCTATGTATTCCGTTTaGAGAGTTTCACAACATGAA | + |
|
Preference number: 2 (lower is better) Translates to: MRHGHTSLISVSWNRDGASMYSV*RVSQHE Trigger: TTCATGTTGTGAAACTCTGCAAACGGAATACATAGA...TGCTCCATCTCTGTTCCAAGAGACACTTATGAGTGATGTATGGCCATGTCTCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| 3UTR-3UTR TCA 90 bp | ACGTACGCACATCTATGTATTCCGTTTGCAGAGTTTCACAACATGAAACTAAATCCAGTGTGTTTTGACTaGGACCTCAGTTTGATTTTA | + |
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Preference number: 2 (lower is better) Translates to: TYAHLCIPFAEFHNMKLNPVCFD*DLSLIL Trigger: TAAAATCAAACTGAGGTCTCAGTCAAAACACACTGG...ATTTAGTTTCATGTTGTGAAACTCTGCAAACGGAATACATAGATGTGCGTACGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 ENSMUST00000197989.2 |
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| 3UTR-3UTR TCA 90 bp | TACGTACGCACATCTATGTATTCCGTTTGCAGAGTTTCACAACATGAAACTAAACCAGTGTGTTTTGACTaGGACCTCAGTTTGATTTTA | + |
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Preference number: 2 (lower is better) Translates to: YVRTSMYSVCRVSQHETKPVCFD*DLSLIL Trigger: TAAAATCAAACTGAGGTCTCAGTCAAAACACACTGG...TTTAGTTTCATGTTGTGAAACTCTGCAAACGGAATACATAGATGTGCGTACGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 ENSMUST00000197989.2 |
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| 3UTR-3UTR TCA 90 bp | GTACGCACATCTATGTATTCCGTTTGCAGAGTTTCACAACATGAAACTAAATTACCAGTGTGTTTTGACTaGGACCTCAGTTTGATTTTA | + |
|
Preference number: 2 (lower is better) Translates to: VRTSMYSVCRVSQHETKLPVCFD*DLSLIL Trigger: TAAAATCAAACTGAGGTCTCAGTCAAAACACACTGG...TAATTTAGTTTCATGTTGTGAAACTCTGCAAACGGAATACATAGATGTGCGTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 ENSMUST00000197989.2 |
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| 3UTR TCA 72 bp | CTATCTTACATCCGCTCTGTTTTTGCTCCTCCAGGCTaGGTCAGGCCAGCTGATGGATTGCCTAGTCTATCC | + |
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Preference number: 3 (lower is better) Translates to: LSYIRSVFAPPG*VRPADGLPSLS Trigger: GGATAGACTAGGCAATCCATCAGCTGGCCTGACTCAGCCTGGAGGAGCAAAAACAGAGCGGATGTAAGATAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| 3UTR TCA 72 bp | GCGTGCTCGATTCAAACACAGCGCAGCACATCCCTGTaGAACCTTAACAAGGTCAAGTGGAGAACCCTCTAC | + |
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Preference number: 3 (lower is better) Translates to: ACSIQTQRSTSL*NLNKVKWRTLY Trigger: GTAGAGGGTTCTCCACTTGACCTTGTTAAGGTTTCACAGGGATGTGCTGCGCTGTGTTTGAATCGAGCACGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| 3UTR TCA 72 bp | AAAACAAGTCTCTCTCCTCAGAGAGAGTTCTGCTCCTaGAGAGGGGGTCTAGTGCGTGCTCGATTCAAACAC | + |
|
Preference number: 3 (lower is better) Translates to: KTSLSPQREFCS*RGGLVRARFKH Trigger: GTGTTTGAATCGAGCACGCACTAGACCCCCTCTTCAGGAGCAGAACTCTCTCTGAGGAGAGAGACTTGTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| 3UTR CCA 72 bp | CCTGAGGGGAGGGGTACCAAAGCATCCATGACAACTTaGTTTGACAAGGACAACTATCTTACATCCGCTCTG | + |
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Preference number: 3 (lower is better) Translates to: PEGRGTKASMTT*FDKDNYLTSAL Trigger: CAGAGCGGATGTAAGATAGTTGTCCTTGTCAAACCAAGTTGTCATGGATGCTTTGGTACCCCTCCCCTCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| 3UTR-3UTR CAA 90 bp | ATGAGACATGGCCATACATCACTCATAAGTGTCTCTTGGAACAGAGATGGAGCAAGGCCAGCTGATGGATaGCCTAGTCTATCCAATAGG | + |
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Preference number: 3 (lower is better) Translates to: MRHGHTSLISVSWNRDGARPADG*PSLSNR Trigger: CCTATTGGATAGACTAGGCAATCCATCAGCTGGCCT...TGCTCCATCTCTGTTCCAAGAGACACTTATGAGTGATGTATGGCCATGTCTCAT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| 3UTR-3UTR CAA 90 bp | GTATTGGCAGTTCCATCCAAAGAACATATGTCTAGGAGCAGAGCGACGACTCCACCTCCCCAGAGAGCTTaGTTCATTCTCATTTCTAAG | + |
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Preference number: 3 (lower is better) Translates to: VLAVPSKEHMSRSRATTPPPQRA*FILISK Trigger: CTTAGAAATGAGAATGAACAAAGCTCTCTGGGGAGG...TGGAGTCGTCGCTCTGCTCCTAGACATATGTTCTTTGGATGGAACTGCCAATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| 3UTR TCA 72 bp | GGGGAGGGGTACCAAAGCATCCATGACAACTTGGTTTaGCAAGGACAACTATCTTACATCCGCTCTGTTTTT | + |
|
Preference number: 3 (lower is better) Translates to: GEGYQSIHDNLV*QGQLSYIRSVF Trigger: AAAAACAGAGCGGATGTAAGATAGTTGTCCTTGTCAAACCAAGTTGTCATGGATGCTTTGGTACCCCTCCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| 3UTR CCA 72 bp | TTTATTGCAATCACCAATCACCAACTTGATGAGACATaGCCATACATCACTCATAAGTGTCTCTTGGAACAG | + |
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Preference number: 3 (lower is better) Translates to: FIAITNHQLDET*PYITHKCLLEQ Trigger: CTGTTCCAAGAGACACTTATGAGTGATGTATGGCCATGTCTCATCAAGTTGGTGATTGGTGATTGCAATAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| 3UTR CCA 72 bp | GGATTGCCTAGTCTATCCAATAGGATAACACTTTGTTaGATCGAAATTCCTTACGTACGCACATCTATGTAT | + |
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Preference number: 3 (lower is better) Translates to: GLPSLSNRITLC*IEIPYVRTSMY Trigger: ATACATAGATGTGCGTACGTAAGGAATTTCGATCCAACAAAGTGTTATCCTATTGGATAGACTAGGCAATCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| 3UTR GCA 72 bp | GAAATTCCTTACGTACGCACATCTATGTATTCCGTTTaGAGAGTTTCACAACATGAAACTAAATTACAACCC | + |
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Preference number: 3 (lower is better) Translates to: EIPYVRTSMYSV*RVSQHETKLQP Trigger: GGGTTGTAATTTAGTTTCATGTTGTGAAACTCTGCAAACGGAATACATAGATGTGCGTACGTAAGGAATTTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| CDS-3UTR GCA 90 bp | GTATTGGCAGTTCCATCCAAAGAACATATGTCTAGGAGCAGAGCGACGACTCCACGTCACGGCCCAGTCTaGAGGATCGGGAGGCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: VLAVPSKEHMSRSRATTPRHGPV*RIGRPP Trigger: GGGAGGCCTCCCGATCCTGCAGACTGGGCCGTGACG...TGGAGTCGTCGCTCTGCTCCTAGACATATGTTCTTTGGATGGAACTGCCAATAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| CDS-3UTR TCA 90 bp | ACTCCAGGGAGAGGGCAGTCCTCCTCCCTCCTCCCTCCTTTCTTCCTCCTTCCTTCAATTTCCTGTTCTTaGAATGCACAGGCTTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: TPGRGQSSSLLPPFFLLPSISCS*NAQACS Trigger: GGAGCAAGCCTGTGCATTTCAAGAACAGGAAATTGA...AGGAAGGAGGAAGAAAGGAGGGAGGAGGGAGGAGGACTGCCCTCTCCCTGGAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| CDS-3UTR GCA 90 bp | CCAGCTGATGGATTGCCTAGTCTATCCAATAGGATAACACTTTGTTGGATCGAACGTCACGGCCCAGTCTaGAGGATCGGGAGGCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: PADGLPSLSNRITLCWIERHGPV*RIGRPP Trigger: GGGAGGCCTCCCGATCCTGCAGACTGGGCCGTGACG...TTCGATCCAACAAAGTGTTATCCTATTGGATAGACTAGGCAATCCATCAGCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| CDS-3UTR TCA 90 bp | GTATTGGCAGTTCCATCCAAAGAACATATGTCTAGGAGCAGAGCGACGACTCCACTGTTCGGAAATAATTaGCAACGTCCGTCACGGCCC | + |
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Preference number: 4 (lower is better) Translates to: VLAVPSKEHMSRSRATTPLFGNN*QRPSRP Trigger: GGGCCGTGACGGACGTTGTCAATTATTTCCGAACAG...TGGAGTCGTCGCTCTGCTCCTAGACATATGTTCTTTGGATGGAACTGCCAATAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| CDS-3UTR GCA 90 bp | TACGTACGCACATCTATGTATTCCGTTTGCAGAGTTTCACAACATGAAACTAAACGTCACGGCCCAGTCTaGAGGATCGGGAGGCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: YVRTSMYSVCRVSQHETKRHGPV*RIGRPP Trigger: GGGAGGCCTCCCGATCCTGCAGACTGGGCCGTGACG...TTTAGTTTCATGTTGTGAAACTCTGCAAACGGAATACATAGATGTGCGTACGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 ENSMUST00000197989.2 |
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| CDS-3UTR GCA 90 bp | GTACGCACATCTATGTATTCCGTTTGCAGAGTTTCACAACATGAAACTAAATTACGTCACGGCCCAGTCTaGAGGATCGGGAGGCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: VRTSMYSVCRVSQHETKLRHGPV*RIGRPP Trigger: GGGAGGCCTCCCGATCCTGCAGACTGGGCCGTGACG...TAATTTAGTTTCATGTTGTGAAACTCTGCAAACGGAATACATAGATGTGCGTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 ENSMUST00000197989.2 |
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| 3UTR CAA 72 bp | TTTGACAAGGACAACTATCTTACATCCGCTCTGTTTTaGCTCCTCCAGGCTGAGTCAGGCCAGCTGATGGAT | + |
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Preference number: 4 (lower is better) Translates to: FDKDNYLTSALF*LLQAESGQLMD Trigger: ATCCATCAGCTGGCCTGACTCAGCCTGGAGGAGCAAAAACAGAGCGGATGTAAGATAGTTGTCCTTGTCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| CDS-3UTR TCA 90 bp | AGGCCAGCTGATGGATTGCCTAGTCTATCCAATAGGATAACACTTTGTTGGATCGGCCCCAGTTTTAGCTaGAGTCCTGTCAACACGTCA | + |
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Preference number: 4 (lower is better) Translates to: RPADGLPSLSNRITLCWIGPSFS*SPVNTS Trigger: TGACGTGTTGACAGGACTTCAGCTAAAACTGGGGCC...GATCCAACAAAGTGTTATCCTATTGGATAGACTAGGCAATCCATCAGCTGGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| CDS-3UTR TCA 90 bp | AGGCCAGCTGATGGATTGCCTAGTCTATCCAATAGGATAACACTTTGTTGGATCTCAATTTCCTGTTCTTaGAATGCACAGGCTTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: RPADGLPSLSNRITLCWISISCS*NAQACS Trigger: GGAGCAAGCCTGTGCATTTCAAGAACAGGAAATTGA...GATCCAACAAAGTGTTATCCTATTGGATAGACTAGGCAATCCATCAGCTGGCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| CDS-3UTR TCA 90 bp | ACGTACGCACATCTATGTATTCCGTTTGCAGAGTTTCACAACATGAAACTAAATCTGTTCGGAAATAATTaGCAACGTCCGTCACGGCCC | + |
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Preference number: 4 (lower is better) Translates to: TYAHLCIPFAEFHNMKLNLFGNN*QRPSRP Trigger: GGGCCGTGACGGACGTTGTCAATTATTTCCGAACAG...ATTTAGTTTCATGTTGTGAAACTCTGCAAACGGAATACATAGATGTGCGTACGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 ENSMUST00000197989.2 |
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| CDS-3UTR TCA 90 bp | TACGTACGCACATCTATGTATTCCGTTTGCAGAGTTTCACAACATGAAACTAAAGGCCCCAGTTTTAGCTaGAGTCCTGTCAACACGTCA | + |
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Preference number: 4 (lower is better) Translates to: YVRTSMYSVCRVSQHETKGPSFS*SPVNTS Trigger: TGACGTGTTGACAGGACTTCAGCTAAAACTGGGGCC...TTTAGTTTCATGTTGTGAAACTCTGCAAACGGAATACATAGATGTGCGTACGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 ENSMUST00000197989.2 |
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| CDS-3UTR TCA 90 bp | ACGTACGCACATCTATGTATTCCGTTTGCAGAGTTTCACAACATGAAACTAAATGGCCCCAGTTTTAGCTaGAGTCCTGTCAACACGTCA | + |
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Preference number: 4 (lower is better) Translates to: TYAHLCIPFAEFHNMKLNGPSFS*SPVNTS Trigger: TGACGTGTTGACAGGACTTCAGCTAAAACTGGGGCC...ATTTAGTTTCATGTTGTGAAACTCTGCAAACGGAATACATAGATGTGCGTACGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 ENSMUST00000197989.2 |
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| 3UTR CAA 72 bp | GATGAGACATGGCCATACATCACTCATAAGTGTCTCTaGGAACAGAGATGGAGCAAACCTACTTCTTCAAGT | + |
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Preference number: 4 (lower is better) Translates to: DETWPYITHKCL*EQRWSKPTSSS Trigger: ACTTGAAGAAGTAGGTTTGCTCCATCTCTGTTCCAAGAGACACTTATGAGTGATGTATGGCCATGTCTCATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125965.8 |
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| CDS-3UTR TCA 90 bp | TACGCACATCTATGTATTCCGTTTGCAGAGTTTCACAACATGAAACTAAATTACCTGTTCGGAAATAATTaGCAACGTCCGTCACGGCCC | + |
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Preference number: 4 (lower is better) Translates to: YAHLCIPFAEFHNMKLNYLFGNN*QRPSRP Trigger: GGGCCGTGACGGACGTTGTCAATTATTTCCGAACAG...GTAATTTAGTTTCATGTTGTGAAACTCTGCAAACGGAATACATAGATGTGCGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 ENSMUST00000197989.2 |
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| CDS-3UTR TCA 90 bp | GTACGCACATCTATGTATTCCGTTTGCAGAGTTTCACAACATGAAACTAAATTAGGCCCCAGTTTTAGCTaGAGTCCTGTCAACACGTCA | + |
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Preference number: 4 (lower is better) Translates to: VRTSMYSVCRVSQHETKLGPSFS*SPVNTS Trigger: TGACGTGTTGACAGGACTTCAGCTAAAACTGGGGCC...TAATTTAGTTTCATGTTGTGAAACTCTGCAAACGGAATACATAGATGTGCGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 ENSMUST00000197989.2 |
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| CDS-3UTR GCA 90 bp | CCAGCTGATGGATTGCCTAGTCTATCCAATAGGATAACACTTTGTTGGATCGAATTGCTCCTCAAATCCTaGTGTTCGGAAATAATTGAC | + |
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Preference number: 4 (lower is better) Translates to: PADGLPSLSNRITLCWIELLLKS*CSEIID Trigger: GTCAATTATTTCCGAACAGCAGGATTTGAGGAGCAA...TTCGATCCAACAAAGTGTTATCCTATTGGATAGACTAGGCAATCCATCAGCTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| CDS-3UTR CAA 90 bp | CTCCTCCAGGCTGAGTCAGGCCAGCTGATGGATTGCCTAGTCTATCCAATAGGAGGGCCATTTCCCTTGTaGTCCATGTCGACAGAGAGC | + |
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Preference number: 5 (lower is better) Translates to: LLQAESGQLMDCLVYPIGGPFPL*SMSTES Trigger: GCTCTCTGTCGACATGGACAACAAGGGAAATGGCCC...TCCTATTGGATAGACTAGGCAATCCATCAGCTGGCCTGACTCAGCCTGGAGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| CDS TCA 90 bp | CCCAGTCTGCAGGATCGGGAGGCCTCCCATTTTCCATGGAATTTTTaGCACCGACAGGGCCATTTCCCTTGTTGTCCATGTCGACAGAGA | + |
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Preference number: 5 (lower is better) Translates to: PSLQDREASHFPWNF*HRQGHFPCCPCRQR Trigger: TCTCTGTCGACATGGACAACAAGGGAAATGGCCCTGTCGGTGTCAAAAATTCCATGGAAAATGGGAGGCCTCCCGATCCTGCAGACTGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| CDS GCA 90 bp | TCCTGCTGTTCGGAAATAATTGACAACGTCCGTCACGGCCCAGTCTaGAGGATCGGGAGGCCTCCCATTTTCCATGGAATTTTTGACACC | + |
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Preference number: 5 (lower is better) Translates to: SCCSEIIDNVRHGPV*RIGRPPIFHGIFDT Trigger: GGTGTCAAAAATTCCATGGAAAATGGGAGGCCTCCCGATCCTGCAGACTGGGCCGTGACGGACGTTGTCAATTATTTCCGAACAGCAGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| CDS-3UTR CAA 90 bp | TTTTTGCTCCTCCAGGCTGAGTCAGGCCAGCTGATGGATTGCCTAGTCTATCCATTGAAATGCACAGGCTaGCTCCTCAAATCCTGCTGT | + |
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Preference number: 5 (lower is better) Translates to: FLLLQAESGQLMDCLVYPLKCTG*LLKSCC Trigger: ACAGCAGGATTTGAGGAGCAAGCCTGTGCATTTCAA...TGGATAGACTAGGCAATCCATCAGCTGGCCTGACTCAGCCTGGAGGAGCAAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| CDS-3UTR CAA 90 bp | AGGCCAGCTGATGGATTGCCTAGTCTATCCAATAGGATAACACTTTGTTGGATCGGGCCATTTCCCTTGTaGTCCATGTCGACAGAGAGC | + |
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Preference number: 5 (lower is better) Translates to: RPADGLPSLSNRITLCWIGPFPL*SMSTES Trigger: GCTCTCTGTCGACATGGACAACAAGGGAAATGGCCC...GATCCAACAAAGTGTTATCCTATTGGATAGACTAGGCAATCCATCAGCTGGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| CDS GCA 90 bp | ATCAATTTCCTGTTCTTGAAATGCACAGGCTTGCTCCTCAAATCCTaGTGTTCGGAAATAATTGACAACGTCCGTCACGGCCCAGTCTGC | + |
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Preference number: 5 (lower is better) Translates to: INFLFLKCTGLLLKS*CSEIIDNVRHGPVC Trigger: GCAGACTGGGCCGTGACGGACGTTGTCAATTATTTCCGAACAGCAGGATTTGAGGAGCAAGCCTGTGCATTTCAAGAACAGGAAATTGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 ENSMUST00000197989.2 |
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| CDS-3UTR CAA 90 bp | CCAGCTGATGGATTGCCTAGTCTATCCAATAGGATAACACTTTGTTGGATCGAAGGGCCATTTCCCTTGTaGTCCATGTCGACAGAGAGC | + |
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Preference number: 5 (lower is better) Translates to: PADGLPSLSNRITLCWIEGPFPL*SMSTES Trigger: GCTCTCTGTCGACATGGACAACAAGGGAAATGGCCC...TTCGATCCAACAAAGTGTTATCCTATTGGATAGACTAGGCAATCCATCAGCTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| CDS-3UTR CAA 90 bp | CCAGCTGATGGATTGCCTAGTCTATCCAATAGGATAACACTTTGTTGGATCGAAATCAATTTCCTGTTCTaGAAATGCACAGGCTTGCTC | + |
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Preference number: 5 (lower is better) Translates to: PADGLPSLSNRITLCWIEINFLF*KCTGLL Trigger: GAGCAAGCCTGTGCATTTCAAGAACAGGAAATTGAT...TTCGATCCAACAAAGTGTTATCCTATTGGATAGACTAGGCAATCCATCAGCTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| CDS-3UTR CAA 90 bp | TACGTACGCACATCTATGTATTCCGTTTGCAGAGTTTCACAACATGAAACTAAATTGAAATGCACAGGCTaGCTCCTCAAATCCTGCTGT | + |
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Preference number: 5 (lower is better) Translates to: YVRTSMYSVCRVSQHETKLKCTG*LLKSCC Trigger: ACAGCAGGATTTGAGGAGCAAGCCTGTGCATTTCAA...TTTAGTTTCATGTTGTGAAACTCTGCAAACGGAATACATAGATGTGCGTACGTA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 ENSMUST00000197989.2 |
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| CDS-3UTR CAA 90 bp | GTACGCACATCTATGTATTCCGTTTGCAGAGTTTCACAACATGAAACTAAATTAATCAATTTCCTGTTCTaGAAATGCACAGGCTTGCTC | + |
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Preference number: 5 (lower is better) Translates to: VRTSMYSVCRVSQHETKLINFLF*KCTGLL Trigger: GAGCAAGCCTGTGCATTTCAAGAACAGGAAATTGAT...TAATTTAGTTTCATGTTGTGAAACTCTGCAAACGGAATACATAGATGTGCGTAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 ENSMUST00000197989.2 |
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| CDS-3UTR CAA 90 bp | TACGCACATCTATGTATTCCGTTTGCAGAGTTTCACAACATGAAACTAAATTACATCAATTTCCTGTTCTaGAAATGCACAGGCTTGCTC | + |
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Preference number: 5 (lower is better) Translates to: YAHLCIPFAEFHNMKLNYINFLF*KCTGLL Trigger: GAGCAAGCCTGTGCATTTCAAGAACAGGAAATTGAT...GTAATTTAGTTTCATGTTGTGAAACTCTGCAAACGGAATACATAGATGTGCGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 ENSMUST00000197989.2 |
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| CDS CAA 90 bp | GCCCAGTCTGCAGGATCGGGAGGCCTCCCATTTTCCATGGAATTTTaGACACCGACAGGGCCATTTCCCTTGTTGTCCATGTCGACAGAG | + |
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Preference number: 6 (lower is better) Translates to: AQSAGSGGLPFSMEF*TPTGPFPLLSMSTE Trigger: CTCTGTCGACATGGACAACAAGGGAAATGGCCCTGTCGGTGTCAAAAATTCCATGGAAAATGGGAGGCCTCCCGATCCTGCAGACTGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| CDS TCA 72 bp | AGGCTTGCTCCTCAAATCCTGCTGTTCGGAAATAATTaGCAACGTCCGTCACGGCCCAGTCTGCAGGATCGG | + |
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Preference number: 6 (lower is better) Translates to: RLAPQILLFGNN*QRPSRPSLQDR Trigger: CCGATCCTGCAGACTGGGCCGTGACGGACGTTGTCAATTATTTCCGAACAGCAGGATTTGAGGAGCAAGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 ENSMUST00000197989.2 |
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| CDS GCA 72 bp | TCGGAAATAATTGACAACGTCCGTCACGGCCCAGTCTaGAGGATCGGGAGGCCTCCCATTTTCCATGGAATT | + |
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Preference number: 6 (lower is better) Translates to: SEIIDNVRHGPV*RIGRPPIFHGI Trigger: AATTCCATGGAAAATGGGAGGCCTCCCGATCCTGCAGACTGGGCCGTGACGGACGTTGTCAATTATTTCCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| CDS CAA 72 bp | GCAGGATCGGGAGGCCTCCCATTTTCCATGGAATTTTaGACACCGACAGGGCCATTTCCCTTGTTGTCCATG | + |
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Preference number: 6 (lower is better) Translates to: AGSGGLPFSMEF*TPTGPFPLLSM Trigger: CATGGACAACAAGGGAAATGGCCCTGTCGGTGTCAAAAATTCCATGGAAAATGGGAGGCCTCCCGATCCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| CDS TCA 72 bp | CAGGATCGGGAGGCCTCCCATTTTCCATGGAATTTTTaGCACCGACAGGGCCATTTCCCTTGTTGTCCATGT | + |
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Preference number: 6 (lower is better) Translates to: QDREASHFPWNF*HRQGHFPCCPC Trigger: ACATGGACAACAAGGGAAATGGCCCTGTCGGTGTCAAAAATTCCATGGAAAATGGGAGGCCTCCCGATCCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 |
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| CDS GCA 72 bp | CTGTTCTTGAAATGCACAGGCTTGCTCCTCAAATCCTaGTGTTCGGAAATAATTGACAACGTCCGTCACGGC | + |
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Preference number: 6 (lower is better) Translates to: LFLKCTGLLLKS*CSEIIDNVRHG Trigger: GCCGTGACGGACGTTGTCAATTATTTCCGAACAGCAGGATTTGAGGAGCAAGCCTGTGCATTTCAAGAACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000124931.8 ENSMUST00000125965.8 ENSMUST00000147113.2 ENSMUST00000197989.2 |
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