Pregenerated sensors for SAMD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079003Ensembl transcript IDs: ENSMUST00000095228.5
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ACAAGAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCTGGGGGTCAACCCATGCCCAGCTCCTaGACTATGGAGCCGCCCTGG | + |
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Preference number: 2 (lower is better) Translates to: TRGPKVPYLTCSPEAGGQPMPSS*TMEPPW Trigger: CCAGGGCGGCTCCATAGTCCAGGAGCTGGGCATGGG...TTGACCCCCAGCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTCTTGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| 3UTR CAA 90 bp | GGAGAATGGAGAAGGGCACCCCCTCCCTGGAGTCTGTTAGGAAGGTaGAGTGTACCCATGCCCAGCTCCTGGACTATGGAGCCGCCCTGG | + |
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Preference number: 2 (lower is better) Translates to: GEWRRAPPPWSLLGR*SVPMPSSWTMEPPW Trigger: CCAGGGCGGCTCCATAGTCCAGGAGCTGGGCATGGGTACACTCAACCTTCCTAACAGACTCCAGGGAGGGGGTGCCCTTCTCCATTCTCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| 3UTR-3UTR CCA 90 bp | ACAAGAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCTGGGGGTCAAAGGGCACCCCCTCCCTaGAGTCTGTTAGGAAGGTTG | + |
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Preference number: 2 (lower is better) Translates to: TRGPKVPYLTCSPEAGGQRAPPP*SLLGRL Trigger: CAACCTTCCTAACAGACTCCAGGGAGGGGGTGCCCT...TTGACCCCCAGCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTCTTGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| 3UTR-3UTR TCA 90 bp | ACAAGAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCTGGGGGTCAATACATCTGGCTGAACTaGAGAGGGGTTTGGGGCCAC | + |
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Preference number: 2 (lower is better) Translates to: TRGPKVPYLTCSPEAGGQYIWLN*RGVWGH Trigger: GTGGCCCCAAACCCCTCTTCAGTTCAGCCAGATGTA...TTGACCCCCAGCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTCTTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| 3UTR-3UTR CCA 90 bp | AAAGGGAAGGACAAGAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCAAAAATGTCCTGGTCTaGGGAGAAAGGGTGACCCCA | + |
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Preference number: 2 (lower is better) Translates to: KGKDKRTQGPLPHLFPRGKNVLV*GERVTP Trigger: TGGGGTCACCCTTTCTCCCCAGACCAGGACATTTTT...GCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTCTTGTCCTTCCCTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| 3UTR-3UTR CCA 90 bp | AATACAGCCAGGTGGTACAATAGTAGACAGACAGAAAGGGAAGGACAAGAGGACGCAGTCTGGACTGGTTaGGGTGGGGACATGGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: NTARWYNSRQTEREGQEDAVWTG*GGDMAG Trigger: CCCAGCCATGTCCCCACCCCAACCAGTCCAGACTGC...GTCCTCTTGTCCTTCCCTTTCTGTCTGTCTACTATTGTACCACCTGGCTGTATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| 3UTR CCA 72 bp | CTGTTAGGAAGGTTGAGTGTACCCATGCCCAGCTCCTaGACTATGGAGCCGCCCTGGGTGCAGTCTGGACTG | + |
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Preference number: 3 (lower is better) Translates to: LLGRLSVPMPSS*TMEPPWVQSGL Trigger: CAGTCCAGACTGCACCCAGGGCGGCTCCATAGTCCAGGAGCTGGGCATGGGTACACTCAACCTTCCTAACAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| 3UTR-3UTR CAA 90 bp | AATACAGCCAGGTGGTACAATAGTAGACAGACAGAAAGGGAAGGACAAGAGGACTGCAGTCTGGACTGGTaGGGGTGGGGACATGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: NTARWYNSRQTEREGQEDCSLDW*GWGHGW Trigger: CCAGCCATGTCCCCACCCCAACCAGTCCAGACTGCA...GTCCTCTTGTCCTTCCCTTTCTGTCTGTCTACTATTGTACCACCTGGCTGTATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR GCA 90 bp | AAGAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCTGGGGGTCAAGGGCACCATCCGGCAGATaGGCTCCAGGTCCGGCCGCG | + |
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Preference number: 4 (lower is better) Translates to: KRTQGPLPHLFPRGWGSRAPSGR*APGPAA Trigger: CGCGGCCGGACCTGGAGCGCATCTGCCGGATGGTGC...CCTTGACCCCCAGCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTCTT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR TCA 90 bp | AAGAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCTGGGGGTCAAGGTGCTCCCCTTGTAGCTaGCCCGGAGCACGGCGCGCT | + |
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Preference number: 4 (lower is better) Translates to: KRTQGPLPHLFPRGWGSRCSPCS*PGARRA Trigger: AGCGCGCCGTGCTCCGGGTCAGCTACAAGGGGAGCA...CCTTGACCCCCAGCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTCTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR GCA 90 bp | TGGAGAAGGGCACCCCCTCCCTGGAGTCTGTTAGGAAGGTTGAGTGTACCCATGGGTCCGGCCGCGCCTTaGGCGAGCGCAGCGAGTCGA | + |
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Preference number: 4 (lower is better) Translates to: WRRAPPPWSLLGRLSVPMGPAAP*ASAASR Trigger: TCGACTCGCTGCGCTCGCGCAAGGCGCGGCCGGACC...CATGGGTACACTCAACCTTCCTAACAGACTCCAGGGAGGGGGTGCCCTTCTCCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR GCA 90 bp | AAAGGGAAGGACAAGAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCCGCTGGCGCCGCCACTaGCCCCGAGGTAGCGCACGA | + |
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Preference number: 4 (lower is better) Translates to: KGKDKRTQGPLPHLFPRGRWRRH*PRGSAR Trigger: TCGTGCGCTACCTCGGGGGCAGTGGCGGCGCCAGCG...GCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTCTTGTCCTTCCCTTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR GCA 90 bp | AAGAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCTGGGGGTCAAGGATGGTGCTGAGCACCTaGGGGGCGGTCACTCTCGGG | + |
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Preference number: 4 (lower is better) Translates to: KRTQGPLPHLFPRGWGSRMVLST*GAVTLG Trigger: CCCGAGAGTGACCGCCCCGCAGGTGCTCAGCACCAT...CCTTGACCCCCAGCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTCTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR CCA 90 bp | GAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCTGGGGGTCAAGGGGAGCACGGCGCGCTGCTaGATCAGTTTCTCGAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: EDPRSLTSPVPQRLGVKGSTARC*ISFSSS Trigger: GGAGCTCGAGAAACTGATCCAGCAGCGCGCCGTGCT...CCCCTTGACCCCCAGCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR CCA 90 bp | GCTCCTGGACTATGGAGCCGCCCTGGGTGCAGTCTGGACTGGTTGGGGTGGGGAGCTCTTGAAAAGCAGTaGCCTGCTCTGGGAAGCCCG | + |
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Preference number: 4 (lower is better) Translates to: APGLWSRPGCSLDWLGWGALEKQ*PALGSP Trigger: CGGGCTTCCCAGAGCAGGCCACTGCTTTTCAAGAGC...TCCCCACCCCAACCAGTCCAGACTGCACCCAGGGCGGCTCCATAGTCCAGGAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR TCA 90 bp | GCTCCTGGACTATGGAGCCGCCCTGGGTGCAGTCTGGACTGGTTGGGGTGGGGAGGAAGCCCGCCTCAGTaGAGTATTCCACCACATCCA | + |
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Preference number: 4 (lower is better) Translates to: APGLWSRPGCSLDWLGWGGSPPQ*SIPPHP Trigger: TGGATGTGGTGGAATACTTCACTGAGGCGGGCTTCC...TCCCCACCCCAACCAGTCCAGACTGCACCCAGGGCGGCTCCATAGTCCAGGAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR CCA 90 bp | CATGCCCAGCTCCTGGACTATGGAGCCGCCCTGGGTGCAGTCTGGACTGGTTGGCAAAGGCACCGGAGATaGAGAATCTGGAGCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: HAQLLDYGAALGAVWTGWQRHRR*RIWSCS Trigger: GGAGCAGCTCCAGATTCTCCATCTCCGGTGCCTTTG...CCAACCAGTCCAGACTGCACCCAGGGCGGCTCCATAGTCCAGGAGCTGGGCATG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR CCA 90 bp | GAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCTGGGGGTCAAGGGGGACTGTCCACTCCACTaGGTCTGTCGGCTTCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: EDPRSLTSPVPQRLGVKGDCPLH*VCRLLL Trigger: AAGGAGAAGCCGACAGACCCAGTGGAGTGGACAGTC...CCCCTTGACCCCCAGCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR CCA 90 bp | GAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCTGGGGGTCAAGGGGAGCGCAGCGAGTCGATaGTGTCCAGAATCCACTCTT | + |
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Preference number: 4 (lower is better) Translates to: EDPRSLTSPVPQRLGVKGSAASR*CPESTL Trigger: AAGAGTGGATTCTGGACACCATCGACTCGCTGCGCT...CCCCTTGACCCCCAGCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR TCA 90 bp | CATGCCCAGCTCCTGGACTATGGAGCCGCCCTGGGTGCAGTCTGGACTGGTTGGCTTGCTGAAGCACCTTaGTGTGGTGCTCGTAGATCT | + |
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Preference number: 4 (lower is better) Translates to: HAQLLDYGAALGAVWTGWLAEAP*CGARRS Trigger: AGATCTACGAGCACCACATCAAGGTGCTTCAGCAAG...CCAACCAGTCCAGACTGCACCCAGGGCGGCTCCATAGTCCAGGAGCTGGGCATG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR GCA 90 bp | GTAAATGAGCCAACCAAGTCCTCCAACCCCATACTCCACTGCTGTGGAGAGGGGGGAACACCTGCCGTGTaGAGCTGCCAGGTGCTGGTC | + |
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Preference number: 4 (lower is better) Translates to: VNEPTKSSNPILHCCGEGGTPAV*SCQVLV Trigger: GACCAGCACCTGGCAGCTGCACACGGCAGGTGTTCC...CCCCTCTCCACAGCAGTGGAGTATGGGGTTGGAGGACTTGGTTGGCTCATTTAC 59% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR CCA 90 bp | GTAAATGAGCCAACCAAGTCCTCCAACCCCATACTCCACTGCTGTGGAGAGGGGGCAGCTGCCAGGTGCTaGTCCCCGTCCTTCATCCTG | + |
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Preference number: 4 (lower is better) Translates to: VNEPTKSSNPILHCCGEGAAARC*SPSFIL Trigger: CAGGATGAAGGACGGGGACCAGCACCTGGCAGCTGC...CCCCTCTCCACAGCAGTGGAGTATGGGGTTGGAGGACTTGGTTGGCTCATTTAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR TCA 90 bp | GAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCTGGGGGTCAAGGGGTCAATTTCCTGCTCTTaGAAAGCAGTGGCCTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: EDPRSLTSPVPQRLGVKGSISCS*KAVACS Trigger: AGAGCAGGCCACTGCTTTTCAAGAGCAGGAAATTGA...CCCCTTGACCCCCAGCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR GCA 90 bp | GTAAATGAGCCAACCAAGTCCTCCAACCCCATACTCCACTGCTGTGGAGAGGGGTGTGCAGCTGCCAGGTaGTGGTCCCCGTCCTTCATC | + |
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Preference number: 4 (lower is better) Translates to: VNEPTKSSNPILHCCGEGCAAAR*WSPSFI Trigger: GATGAAGGACGGGGACCAGCACCTGGCAGCTGCACA...CCCCTCTCCACAGCAGTGGAGTATGGGGTTGGAGGACTTGGTTGGCTCATTTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| 3UTR CAA 72 bp | AGAAGGGCACCCCCTCCCTGGAGTCTGTTAGGAAGGTaGAGTGTACCCATGCCCAGCTCCTGGACTATGGAG | + |
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Preference number: 4 (lower is better) Translates to: RRAPPPWSLLGR*SVPMPSSWTME Trigger: CTCCATAGTCCAGGAGCTGGGCATGGGTACACTCAACCTTCCTAACAGACTCCAGGGAGGGGGTGCCCTTCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR TCA 90 bp | GGGGGAGAATGGAGAAGGGCACCCCCTCCCTGGAGTCTGTTAGGAAGGTTGAGTATTCCACCACATCCATaGCTGTCCACTCCACTGGGT | + |
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Preference number: 4 (lower is better) Translates to: GGEWRRAPPPWSLLGRLSIPPHP*LSTPLG Trigger: ACCCAGTGGAGTGGACAGTCATGGATGTGGTGGAAT...ACTCAACCTTCCTAACAGACTCCAGGGAGGGGGTGCCCTTCTCCATTCTCCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR GCA 90 bp | CATGCCCAGCTCCTGGACTATGGAGCCGCCCTGGGTGCAGTCTGGACTGGTTGGAGCACATCTGTCCGTTaGATGAGCAACAAAGACTTG | + |
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Preference number: 4 (lower is better) Translates to: HAQLLDYGAALGAVWTGWSTSVR*MSNKDL Trigger: CAAGTCTTTGTTGCTCATGCAACGGACAGATGTGCT...CCAACCAGTCCAGACTGCACCCAGGGCGGCTCCATAGTCCAGGAGCTGGGCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR TCA 90 bp | AAAGGGAAGGACAAGAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCACTCTCGGGCACTTCTaGGCCCTCAGATACATTGTC | + |
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Preference number: 4 (lower is better) Translates to: KGKDKRTQGPLPHLFPRGTLGHF*ALRYIV Trigger: GACAATGTATCTGAGGGCTCAGAAGTGCCCGAGAGT...GCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTCTTGTCCTTCCCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR TCA 90 bp | TGGAGAAGGGCACCCCCTCCCTGGAGTCTGTTAGGAAGGTTGAGTGTACCCATGGAATGGATAGGCCAGTaGGCACATCTGTCCGTTGCA | + |
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Preference number: 4 (lower is better) Translates to: WRRAPPPWSLLGRLSVPMEWIGQ*AHLSVA Trigger: TGCAACGGACAGATGTGCTCACTGGCCTATCCATTC...CATGGGTACACTCAACCTTCCTAACAGACTCCAGGGAGGGGGTGCCCTTCTCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR TCA 90 bp | AAAGGGAAGGACAAGAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCTCAAAGTGGCCTTGCTaGAGCACCTTGATGTGGTGC | + |
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Preference number: 4 (lower is better) Translates to: KGKDKRTQGPLPHLFPRGSKWPC*STLMWC Trigger: GCACCACATCAAGGTGCTTCAGCAAGGCCACTTTGA...GCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTCTTGTCCTTCCCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR GCA 90 bp | AATACAGCCAGGTGGTACAATAGTAGACAGACAGAAAGGGAAGGACAAGAGGACCGGAGCACGGCGCGCTaGTGGATCAGTTTCTCGAGC | + |
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Preference number: 4 (lower is better) Translates to: NTARWYNSRQTEREGQEDRSTAR*WISFSS Trigger: GCTCGAGAAACTGATCCAGCAGCGCGCCGTGCTCCG...GTCCTCTTGTCCTTCCCTTTCTGTCTGTCTACTATTGTACCACCTGGCTGTATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS GCA 90 bp | TGCGCTCCGGCTCCGGGCCGTGCCGCCGCCGCACCATCCGGCAGATaGGCTCCAGGTCCGGCCGCGCCTTGCGCGAGCGCAGCGAGTCGA | + |
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Preference number: 5 (lower is better) Translates to: CAPAPGRAAAAPSGR*APGPAAPCASAASR Trigger: TCGACTCGCTGCGCTCGCGCAAGGCGCGGCCGGACCTGGAGCGCATCTGCCGGATGGTGCGGCGGCGGCACGGCCCGGAGCCGGAGCGCA 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS GCA 90 bp | ATCAGTTTCTCGAGCTCCGCGCGCGTGCGCTCCGGCTCCGGGCCGTaGCGCCGCCGCACCATCCGGCAGATGCGCTCCAGGTCCGGCCGC | + |
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Preference number: 5 (lower is better) Translates to: ISFSSSARVRSGSGP*RRRTIRQMRSRSGR Trigger: GCGGCCGGACCTGGAGCGCATCTGCCGGATGGTGCGGCGGCGGCACGGCCCGGAGCCGGAGCGCACGCGCGCGGAGCTCGAGAAACTGAT 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS GCA 90 bp | GCCGCCGCACCATCCGGCAGATGCGCTCCAGGTCCGGCCGCGCCTTaGGCGAGCGCAGCGAGTCGATGGTGTCCAGAATCCACTCTTGGT | + |
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Preference number: 5 (lower is better) Translates to: AAAPSGRCAPGPAAP*ASAASRWCPESTLG Trigger: ACCAAGAGTGGATTCTGGACACCATCGACTCGCTGCGCTCGCGCAAGGCGCGGCCGGACCTGGAGCGCATCTGCCGGATGGTGCGGCGGC 69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS CCA 90 bp | TGCGCTCCAGGTCCGGCCGCGCCTTGCGCGAGCGCAGCGAGTCGATaGTGTCCAGAATCCACTCTTGGTAGTGCGGGGAAGCGGCGGACG | + |
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Preference number: 5 (lower is better) Translates to: CAPGPAAPCASAASR*CPESTLGSAGKRRT Trigger: CGTCCGCCGCTTCCCCGCACTACCAAGAGTGGATTCTGGACACCATCGACTCGCTGCGCTCGCGCAAGGCGCGGCCGGACCTGGAGCGCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS TCA 90 bp | GCTGGACGCGCGCCGCGTTGCGGTACGAGATGCTCCCCTTGTAGCTaGCCCGGAGCACGGCGCGCTGCTGGATCAGTTTCTCGAGCTCCG | + |
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Preference number: 5 (lower is better) Translates to: AGRAPRCGTRCSPCS*PGARRAAGSVSRAP Trigger: CGGAGCTCGAGAAACTGATCCAGCAGCGCGCCGTGCTCCGGGTCAGCTACAAGGGGAGCATCTCGTACCGCAACGCGGCGCGCGTCCAGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR CAA 90 bp | AAGAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCTGGGGGTCAAGGTCTTCTCCACCTCTCTaGCTCCGCGCCGCGCGTGCG | + |
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Preference number: 5 (lower is better) Translates to: KRTQGPLPHLFPRGWGSRSSPPL*LRAARA Trigger: CGCACGCGCGGCGCGGAGCAAGAGAGGTGGAGAAGA...CCTTGACCCCCAGCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTCTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS GCA 90 bp | ATTCACAGCTGTCATCGGGAACACCTGCCGTGTGCAGCTGCCAGGTaGTGGTCCCCGTCCTTCATCCTGGCCCTGGTAGGGTCCACAGGG | + |
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Preference number: 5 (lower is better) Translates to: IHSCHREHLPCAAAR*WSPSFILALVGSTG Trigger: CCCTGTGGACCCTACCAGGGCCAGGATGAAGGACGGGGACCAGCACCTGGCAGCTGCACACGGCAGGTGTTCCCGATGACAGCTGTGAAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR CAA 90 bp | AAAGGGAAGGACAAGAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCTGGACGCGCGCCGCGTaGCGGTACGAGATGCTCCCC | + |
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Preference number: 5 (lower is better) Translates to: KGKDKRTQGPLPHLFPRGWTRAA*RYEMLP Trigger: GGGGAGCATCTCGTACCGCAACGCGGCGCGCGTCCA...GCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTCTTGTCCTTCCCTTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS TCA 90 bp | CTGATGGTGCTGAGCACCTGCGGGGCGGTCACTCTCGGGCACTTCTaGGCCCTCAGATACATTGTCCTCCTCCTCCTCCTCCTCGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: LMVLSTCGAVTLGHF*ALRYIVLLLLLLVF Trigger: GAAGACGAGGAGGAGGAGGAGGAGGACAATGTATCTGAGGGCTCAGAAGTGCCCGAGAGTGACCGCCCCGCAGGTGCTCAGCACCATCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS GCA 90 bp | CTTCTTTATTCACAGCTGTCATCGGGAACACCTGCCGTGTGCAGCTaGCAGGTGCTGGTCCCCGTCCTTCATCCTGGCCCTGGTAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: LLYSQLSSGTPAVCS*QVLVPVLHPGPGRV Trigger: GACCCTACCAGGGCCAGGATGAAGGACGGGGACCAGCACCTGGCAGCTGCACACGGCAGGTGTTCCCGATGACAGCTGTGAATAAAGAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS GCA 90 bp | ATCCCCCTTCTTTATTCACAGCTGTCATCGGGAACACCTGCCGTGTaGAGCTGCCAGGTGCTGGTCCCCGTCCTTCATCCTGGCCCTGGT | + |
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Preference number: 5 (lower is better) Translates to: IPLLYSQLSSGTPAV*SCQVLVPVLHPGPG Trigger: ACCAGGGCCAGGATGAAGGACGGGGACCAGCACCTGGCAGCTGCACACGGCAGGTGTTCCCGATGACAGCTGTGAATAAAGAAGGGGGAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR CAA 90 bp | ACAAGAGGACCCAAGGTCCCTTACCTCACCTGTTCCCCAGAGGCTGGGGGTCAACAGGGCGACCACTCCTaGACCCTCTCCTTAGCACTC | + |
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Preference number: 5 (lower is better) Translates to: TRGPKVPYLTCSPEAGGQQGDHS*TLSLAL Trigger: GAGTGCTAAGGAGAGGGTCAAGGAGTGGTCGCCCTG...TTGACCCCCAGCCTCTGGGGAACAGGTGAGGTAAGGGACCTTGGGTCCTCTTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS GCA 90 bp | CAAGCTGATCCCCCTTCTTTATTCACAGCTGTCATCGGGAACACCTaGCGTGTGCAGCTGCCAGGTGCTGGTCCCCGTCCTTCATCCTGG | + |
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Preference number: 5 (lower is better) Translates to: QADPPSLFTAVIGNT*RVQLPGAGPRPSSW Trigger: CCAGGATGAAGGACGGGGACCAGCACCTGGCAGCTGCACACGGCAGGTGTTCCCGATGACAGCTGTGAATAAAGAAGGGGGATCAGCTTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS TCA 90 bp | GGCCATCAGGATCATCATCCTCAAAGTGGCCTTGCTGAAGCACCTTaGTGTGGTGCTCGTAGATCTTCAGGGCTGGGCCCAGGCGAATGG | + |
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Preference number: 5 (lower is better) Translates to: GHQDHHPQSGLAEAP*CGARRSSGLGPGEW Trigger: CCATTCGCCTGGGCCCAGCCCTGAAGATCTACGAGCACCACATCAAGGTGCTTCAGCAAGGCCACTTTGAGGATGATGATCCTGATGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR CAA 90 bp | GCTCCTGGACTATGGAGCCGCCCTGGGTGCAGTCTGGACTGGTTGGGGTGGGGAATGAGCAACAAAGACTaGCCATCAATTTCCTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: APGLWSRPGCSLDWLGWGMSNKD*PSISCS Trigger: AGAGCAGGAAATTGATGGCAAGTCTTTGTTGCTCAT...TCCCCACCCCAACCAGTCCAGACTGCACCCAGGGCGGCTCCATAGTCCAGGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR CAA 90 bp | TGGAGAAGGGCACCCCCTCCCTGGAGTCTGTTAGGAAGGTTGAGTGTACCCATGGAGCACATCTGTCCGTaGCATGAGCAACAAAGACTT | + |
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Preference number: 5 (lower is better) Translates to: WRRAPPPWSLLGRLSVPMEHICP*HEQQRL Trigger: AAGTCTTTGTTGCTCATGCAACGGACAGATGTGCTC...CATGGGTACACTCAACCTTCCTAACAGACTCCAGGGAGGGGGTGCCCTTCTCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS-3UTR CAA 90 bp | GTAAATGAGCCAACCAAGTCCTCCAACCCCATACTCCACTGCTGTGGAGAGGGGATCAATTTCCTGCTCTaGAAAAGCAGTGGCCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: VNEPTKSSNPILHCCGEGINFLL*KSSGLL Trigger: GAGCAGGCCACTGCTTTTCAAGAGCAGGAAATTGAT...CCCCTCTCCACAGCAGTGGAGTATGGGGTTGGAGGACTTGGTTGGCTCATTTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS CCA 90 bp | AGACTTGCCATCAATTTCCTGCTCTTGAAAAGCAGTGGCCTGCTCTaGGAAGCCCGCCTCAGTGAAGTATTCCACCACATCCATGACTGT | + |
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Preference number: 5 (lower is better) Translates to: RLAINFLLLKSSGLL*EARLSEVFHHIHDC Trigger: ACAGTCATGGATGTGGTGGAATACTTCACTGAGGCGGGCTTCCCAGAGCAGGCCACTGCTTTTCAAGAGCAGGAAATTGATGGCAAGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS GCA 72 bp | GCTCCGGGCCGTGCCGCCGCCGCACCATCCGGCAGATaGGCTCCAGGTCCGGCCGCGCCTTGCGCGAGCGCA | + |
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Preference number: 6 (lower is better) Translates to: APGRAAAAPSGR*APGPAAPCASA Trigger: TGCGCTCGCGCAAGGCGCGGCCGGACCTGGAGCGCATCTGCCGGATGGTGCGGCGGCGGCACGGCCCGGAGC 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS GCA 72 bp | TGTCTCCGCGGGGTAGCGCGAGCGCTCCCAGGCGGGTaGGCTCCAGACGGCCTCGCGCCGCTTCCTCTTCCA | + |
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Preference number: 6 (lower is better) Translates to: CLRGVARALPGG*APDGLAPLPLP Trigger: TGGAAGAGGAAGCGGCGCGAGGCCGTCTGGAGCGCACCCGCCTGGGAGCGCTCGCGCTACCCCGCGGAGACA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS CAA 90 bp | CGCCTTGCGCGAGCGCAGCGAGTCGATGGTGTCCAGAATCCACTCTaGGTAGTGCGGGGAAGCGGCGGACGACGAGGCGGCGGCCGCCGT | + |
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Preference number: 6 (lower is better) Translates to: RLARAQRVDGVQNPL*VVRGSGGRRGGGRR Trigger: ACGGCGGCCGCCGCCTCGTCGTCCGCCGCTTCCCCGCACTACCAAGAGTGGATTCTGGACACCATCGACTCGCTGCGCTCGCGCAAGGCG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS CAA 90 bp | CGCCGCCGCACCATCCGGCAGATGCGCTCCAGGTCCGGCCGCGCCTaGCGCGAGCGCAGCGAGTCGATGGTGTCCAGAATCCACTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: RRRTIRQMRSRSGRA*RERSESMVSRIHSW Trigger: CCAAGAGTGGATTCTGGACACCATCGACTCGCTGCGCTCGCGCAAGGCGCGGCCGGACCTGGAGCGCATCTGCCGGATGGTGCGGCGGCG 70% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS CAA 72 bp | ACCATCCGGCAGATGCGCTCCAGGTCCGGCCGCGCCTaGCGCGAGCGCAGCGAGTCGATGGTGTCCAGAATC | + |
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Preference number: 6 (lower is better) Translates to: TIRQMRSRSGRA*RERSESMVSRI Trigger: GATTCTGGACACCATCGACTCGCTGCGCTCGCGCAAGGCGCGGCCGGACCTGGAGCGCATCTGCCGGATGGT 68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS CCA 72 bp | GGTCCGGCCGCGCCTTGCGCGAGCGCAGCGAGTCGATaGTGTCCAGAATCCACTCTTGGTAGTGCGGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: GPAAPCASAASR*CPESTLGSAGK Trigger: CTTCCCCGCACTACCAAGAGTGGATTCTGGACACCATCGACTCGCTGCGCTCGCGCAAGGCGCGGCCGGACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS CAA 72 bp | CGAGCGCAGCGAGTCGATGGTGTCCAGAATCCACTCTaGGTAGTGCGGGGAAGCGGCGGACGACGAGGCGGC | + |
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Preference number: 6 (lower is better) Translates to: RAQRVDGVQNPL*VVRGSGGRRGG Trigger: GCCGCCTCGTCGTCCGCCGCTTCCCCGCACTACCAAGAGTGGATTCTGGACACCATCGACTCGCTGCGCTCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS TCA 72 bp | GCGCCGCGTTGCGGTACGAGATGCTCCCCTTGTAGCTaGCCCGGAGCACGGCGCGCTGCTGGATCAGTTTCT | + |
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Preference number: 6 (lower is better) Translates to: APRCGTRCSPCS*PGARRAAGSVS Trigger: AGAAACTGATCCAGCAGCGCGCCGTGCTCCGGGTCAGCTACAAGGGGAGCATCTCGTACCGCAACGCGGCGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS TCA 72 bp | CTGAGCACCTGCGGGGCGGTCACTCTCGGGCACTTCTaGGCCCTCAGATACATTGTCCTCCTCCTCCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: LSTCGAVTLGHF*ALRYIVLLLLL Trigger: GAGGAGGAGGAGGAGGACAATGTATCTGAGGGCTCAGAAGTGCCCGAGAGTGACCGCCCCGCAGGTGCTCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS GCA 72 bp | CCCCCTTCTTTATTCACAGCTGTCATCGGGAACACCTaGCGTGTGCAGCTGCCAGGTGCTGGTCCCCGTCCT | + |
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Preference number: 6 (lower is better) Translates to: PPSLFTAVIGNT*RVQLPGAGPRP Trigger: AGGACGGGGACCAGCACCTGGCAGCTGCACACGGCAGGTGTTCCCGATGACAGCTGTGAATAAAGAAGGGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS CAA 72 bp | ATGACTGTCCACTCCACTGGGTCTGTCGGCTTCTCCTaGCGCCCGGGAGGACAGCCAAAAGGTGTCCCATCA | + |
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Preference number: 6 (lower is better) Translates to: MTVHSTGSVGFS*RPGGQPKGVPS Trigger: TGATGGGACACCTTTTGGCTGTCCTCCCGGGCGCAAGGAGAAGCCGACAGACCCAGTGGAGTGGACAGTCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS GCA 72 bp | CTTTATTCACAGCTGTCATCGGGAACACCTGCCGTGTaGAGCTGCCAGGTGCTGGTCCCCGTCCTTCATCCT | + |
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Preference number: 6 (lower is better) Translates to: LYSQLSSGTPAV*SCQVLVPVLHP Trigger: AGGATGAAGGACGGGGACCAGCACCTGGCAGCTGCACACGGCAGGTGTTCCCGATGACAGCTGTGAATAAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS TCA 72 bp | GATCATCATCCTCAAAGTGGCCTTGCTGAAGCACCTTaGTGTGGTGCTCGTAGATCTTCAGGGCTGGGCCCA | + |
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Preference number: 6 (lower is better) Translates to: DHHPQSGLAEAP*CGARRSSGLGP Trigger: TGGGCCCAGCCCTGAAGATCTACGAGCACCACATCAAGGTGCTTCAGCAAGGCCACTTTGAGGATGATGATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS TCA 72 bp | CGGAGATGGAGAATCTGGAGCTGCTCCAACACAAGCTaGTCCCCCTTCTTTATTCACAGCTGTCATCGGGAA | + |
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Preference number: 6 (lower is better) Translates to: RRWRIWSCSNTS*SPFFIHSCHRE Trigger: TTCCCGATGACAGCTGTGAATAAAGAAGGGGGATCAGCTTGTGTTGGAGCAGCTCCAGATTCTCCATCTCCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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| CDS CCA 72 bp | ATCAATTTCCTGCTCTTGAAAAGCAGTGGCCTGCTCTaGGAAGCCCGCCTCAGTGAAGTATTCCACCACATC | + |
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Preference number: 6 (lower is better) Translates to: INFLLLKSSGLL*EARLSEVFHHI Trigger: GATGTGGTGGAATACTTCACTGAGGCGGGCTTCCCAGAGCAGGCCACTGCTTTTCAAGAGCAGGAAATTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095228.5 |
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