Pregenerated sensors for SAG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056055Ensembl transcript IDs: ENSMUST00000077772.12, ENSMUST00000177757.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CGGGGGCTTCCCTCAAGGCACCCGGAACTACAAGCAGTTTCTAGGCATCTAGGCTCCTCAGGCTGCGGGTaGATGAGGCGGAACGGCACC | + |
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Preference number: 4 (lower is better) Translates to: RGLPSRHPELQAVSRHLGSSGCG*MRRNGT Trigger: GGTGCCGTTCCGCCTCATGCACCCGCAGCCTGAGGA...GCCTAGATGCCTAGAAACTGCTTGTAGTTCCGGGTGCCTTGAGGGAAGCCCCCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CCA 90 bp | CGGGGGCTTCCCTCAAGGCACCCGGAACTACAAGCAGTTTCTAGGCATCTAGGCGCTTCAGCACTGGGCTaGGGACCCATCTCAGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: RGLPSRHPELQAVSRHLGASALG*GPISGG Trigger: CCCACCTGAGATGGGTCCCCAGCCCAGTGCTGAAGC...GCCTAGATGCCTAGAAACTGCTTGTAGTTCCGGGTGCCTTGAGGGAAGCCCCCG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR GCA 90 bp | CGGGGGCTTCCCTCAAGGCACCCGGAACTACAAGCAGTTTCTAGGCATCTAGGCTCCTGGGGAGCTGGCTaGAACATCACTGAACAGGGT | + |
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Preference number: 4 (lower is better) Translates to: RGLPSRHPELQAVSRHLGSWGAG*NITEQG Trigger: ACCCTGTTCAGTGATGTTGCAGCCAGCTCCCCAGGA...GCCTAGATGCCTAGAAACTGCTTGTAGTTCCGGGTGCCTTGAGGGAAGCCCCCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR GCA 90 bp | TTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACCCGGCTGGATCCTCAGGCTaGGGGTGCATGAGGCGGAAC | + |
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Preference number: 4 (lower is better) Translates to: LISSITLRVYRGLPSRHPAGSSG*GCMRRN Trigger: GTTCCGCCTCATGCACCCGCAGCCTGAGGATCCAGC...CGGGTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CCA 90 bp | TTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACCCGAGGAGGCTTCAGCACTaGGCTGGGGACCCATCTCAG | + |
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Preference number: 4 (lower is better) Translates to: LISSITLRVYRGLPSRHPRRLQH*AGDPSQ Trigger: CTGAGATGGGTCCCCAGCCCAGTGCTGAAGCCTCCT...CGGGTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR TCA 90 bp | TTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACCCGTTTGCTGAGGGAGACTaGGAGGTTCAGGGGCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: LISSITLRVYRGLPSRHPFAEGD*EVQGLV Trigger: GACAAGCCCCTGAACCTCTCAGTCTCCCTCAGCAAA...CGGGTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR TCA 90 bp | CGGGGGCTTCCCTCAAGGCACCCGGAACTACAAGCAGTTTCTAGGCATCTAGGCGACGTAATAGTCACTTaGGTAGAGAACCACATTGGC | + |
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Preference number: 4 (lower is better) Translates to: RGLPSRHPELQAVSRHLGDVIVT*VENHIG Trigger: GCCAATGTGGTTCTCTACTCAAGTGACTATTACGTC...GCCTAGATGCCTAGAAACTGCTTGTAGTTCCGGGTGCCTTGAGGGAAGCCCCCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CCA 90 bp | CATGCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGGGGACCCATCTCAGGTaGGGCATGCTGCACTTTCCG | + |
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Preference number: 4 (lower is better) Translates to: HALISSITLRVYRGLPSRGTHLR*GMLHFP Trigger: CGGAAAGTGCAGCATGCCCCACCTGAGATGGGTCCC...CCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGCATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| 3UTR CAA 72 bp | GGGAGGAATGCTCATGCTTTGATATCTAGCATAACTTaGAGAGTCTACCGGGGGCTTCCCTCAAGGCACCCG | + |
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Preference number: 4 (lower is better) Translates to: GRNAHALISSIT*RVYRGLPSRHP Trigger: CGGGTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGCATGAGCATTCCTCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CCA 90 bp | GCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACAGGCTCTCTTGGAGTTaGGTGAGGACACTCATGGCC | + |
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Preference number: 4 (lower is better) Translates to: ALISSITLRVYRGLPSRHRLSWS*VRTLMA Trigger: GGCCATGAGTGTCCTCACCCAACTCCAAGAGAGCCT...GTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CCA 90 bp | GCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACCTCTTGCCTACATCCTaGGGAGCTGGCTGCAACATC | + |
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Preference number: 4 (lower is better) Translates to: ALISSITLRVYRGLPSRHLLPTS*GAGCNI Trigger: GATGTTGCAGCCAGCTCCCCAGGATGTAGGCAAGAG...GTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR GCA 90 bp | TTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACCCGAAAAATACAGGTCCCTaGGGAAGGTCAGGCCCATCA | + |
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Preference number: 4 (lower is better) Translates to: LISSITLRVYRGLPSRHPKNTGP*GRSGPS Trigger: TGATGGGCCTGACCTTCCGCAGGGACCTGTATTTTT...CGGGTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR GCA 90 bp | GCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACTCAGGTGGGGCATGCTaGACTTTCCGGATCAGTAAC | + |
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Preference number: 4 (lower is better) Translates to: ALISSITLRVYRGLPSRHSGGAC*TFRISN Trigger: GTTACTGATCCGGAAAGTGCAGCATGCCCCACCTGA...GTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR GCA 90 bp | TTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACCCGTCAGACATGAAGAACTaGCAGGAGGCTTCAGCACTG | + |
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Preference number: 4 (lower is better) Translates to: LISSITLRVYRGLPSRHPSDMKN*QEASAL Trigger: CAGTGCTGAAGCCTCCTGGCAGTTCTTCATGTCTGA...CGGGTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CCA 90 bp | TTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACCCGTCACAGTCACGGGGATaGGCTCCCCATGGAAATATA | + |
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Preference number: 4 (lower is better) Translates to: LISSITLRVYRGLPSRHPSQSRG*APHGNI Trigger: TATATTTCCATGGGGAGCCCATCCCCGTGACTGTGA...CGGGTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR TCA 90 bp | CATGCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGGGTAGTCAGGAAACGTaGGCAGAAAGGGGTACGTGT | + |
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Preference number: 4 (lower is better) Translates to: HALISSITLRVYRGLPSRGSQET*AERGTC Trigger: ACACGTACCCCTTTCTGCTCACGTTTCCTGACTACC...CCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGCATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR TCA 90 bp | AATGCTCATGCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCGGGGCTTGTCAGACATaGAGAACTGCCAGGAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: NAHALISSITLRVYRGLPGACQT*RTARRL Trigger: AAGCCTCCTGGCAGTTCTTCATGTCTGACAAGCCCC...GGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGCATGAGCATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR GCA 90 bp | GCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACTCCCATCCAGCGCGATaGCTCTTCTTTCTCTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: ALISSITLRVYRGLPSRHSHPAR*LFFLCC Trigger: ACAACAGAGAAAGAAGAGGCATCGCGCTGGATGGGA...GTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CCA 90 bp | CATGCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGTTGAGCAGGCTCTCTTaGAGTTGGGTGAGGACACTC | + |
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Preference number: 4 (lower is better) Translates to: HALISSITLRVYRGLPSRLSRLS*SWVRTL Trigger: GAGTGTCCTCACCCAACTCCAAGAGAGCCTGCTCAA...CCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGCATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CCA 90 bp | CATGCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGGCACAGAGCTCTTCTTaGGGATCTTGTCCTCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: HALISSITLRVYRGLPSRAQSSS*GSCPPQ Trigger: CTGAGGAGGACAAGATCCCCAAGAAGAGCTCTGTGC...CCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGCATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR TCA 90 bp | CATGCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACCTTGATATGGTATaGCACCAGGATCCCCATGAC | + |
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Preference number: 4 (lower is better) Translates to: HALISSITLRVYRGLPSRHLDMV*HQDPHD Trigger: GTCATGGGGATCCTGGTGTCATACCATATCAAGGTG...CCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGCATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR GCA 90 bp | CATGCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCTGAACACTTTCTTTTaGTGGATCCTCAGGCTGCGG | + |
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Preference number: 4 (lower is better) Translates to: HALISSITLRVYRGLPSRLNTFF*WILRLR Trigger: CCGCAGCCTGAGGATCCAGCAAAAGAAAGTGTTCAG...CCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGCATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CCA 90 bp | CATGCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCCAGCACCAGTGTCTTaGTCAAAGTGCTGTTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: HALISSITLRVYRGLPSRPAPVS*SKCCLA Trigger: AGCCAAACAGCACTTTGACCAAGACACTGGTGCTGG...CCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGCATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CCA 90 bp | CATGCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGGGGATGGGCTCCCCATaGAAATATATCTCTTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: HALISSITLRVYRGLPSRGMGSP*KYISLL Trigger: CAGCAAAGAGATATATTTCCATGGGGAGCCCATCCC...CCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGCATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CCA 90 bp | GCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACGGTCAAAGTGCTGTTTaGCTGCACTTTTTCTTGTGT | + |
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Preference number: 4 (lower is better) Translates to: ALISSITLRVYRGLPSRHGQSAV*LHFFLC Trigger: ACACAAGAAAAAGTGCAGCCAAACAGCACTTTGACC...GTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR GCA 90 bp | GCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACAAAGTGCTGTTTGGCTaGACTTTTTCTTGTGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: ALISSITLRVYRGLPSRHKVLFG*TFSCVS Trigger: GGAAACACAAGAAAAAGTGCAGCCAAACAGCACTTT...GTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CCA 90 bp | GCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACAGTAGAGAACCACATTaGCTATCTGTTCCACTGATA | + |
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Preference number: 4 (lower is better) Translates to: ALISSITLRVYRGLPSRHSREPH*LSVPLI Trigger: TATCAGTGGAACAGATAGCCAATGTGGTTCTCTACT...GTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| 3UTR CAA 72 bp | CCCAGAGACTTTATTTCTGGGAGGAATGCTCATGCTTaGATATCTAGCATAACTTTGAGAGTCTACCGGGGG | + |
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Preference number: 4 (lower is better) Translates to: PRDFISGRNAHA*ISSITLRVYRG Trigger: CCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGCATGAGCATTCCTCCCAGAAATAAAGTCTCTGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS GCA 90 bp | CAGGAGGCTTCAGCACTGGGCTGGGGACCCATCTCAGGTGGGGCATaGTGCACTTTCCGGATCAGTAACCGCACAGAGCTCTTCTTGGGG | + |
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Preference number: 5 (lower is better) Translates to: QEASALGWGPISGGA*CTFRISNRTELFLG Trigger: CCCCAAGAAGAGCTCTGTGCGGTTACTGATCCGGAAAGTGCAGCATGCCCCACCTGAGATGGGTCCCCAGCCCAGTGCTGAAGCCTCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS GCA 90 bp | CTGAGGGAGACTGAGAGGTTCAGGGGCTTGTCAGACATGAAGAACTaGCAGGAGGCTTCAGCACTGGGCTGGGGACCCATCTCAGGTGGG | + |
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Preference number: 5 (lower is better) Translates to: LRETERFRGLSDMKN*QEASALGWGPISGG Trigger: CCCACCTGAGATGGGTCCCCAGCCCAGTGCTGAAGCCTCCTGGCAGTTCTTCATGTCTGACAAGCCCCTGAACCTCTCAGTCTCCCTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS-3UTR CAA 90 bp | CGGGGGCTTCCCTCAAGGCACCCGGAACTACAAGCAGTTTCTAGGCATCTAGGCCAGGCTCTCTTGGAGTaGGGTGAGGACACTCATGGC | + |
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Preference number: 5 (lower is better) Translates to: RGLPSRHPELQAVSRHLGQALLE*GEDTHG Trigger: GCCATGAGTGTCCTCACCCAACTCCAAGAGAGCCTG...GCCTAGATGCCTAGAAACTGCTTGTAGTTCCGGGTGCCTTGAGGGAAGCCCCCG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS CCA 90 bp | GGGTACGTGTTGTCTCCCAGTTTCTTGAGCAGGCTCTCTTGGAGTTaGGTGAGGACACTCATGGCCCCAACAGGAGGGTATACCTGGACC | + |
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Preference number: 5 (lower is better) Translates to: GYVLSPSFLSRLSWS*VRTLMAPTGGYTWT Trigger: GGTCCAGGTATACCCTCCTGTTGGGGCCATGAGTGTCCTCACCCAACTCCAAGAGAGCCTGCTCAAGAAACTGGGAGACAACACGTACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS-3UTR CAA 90 bp | CGGGGGCTTCCCTCAAGGCACCCGGAACTACAAGCAGTTTCTAGGCATCTAGGCCCTCTTCTTTCTCTGTaGTTAGCCAGTAGGGGCACC | + |
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Preference number: 5 (lower is better) Translates to: RGLPSRHPELQAVSRHLGPLLSL*LASRGT Trigger: GGTGCCCCTACTGGCTAACAACAGAGAAAGAAGAGG...GCCTAGATGCCTAGAAACTGCTTGTAGTTCCGGGTGCCTTGAGGGAAGCCCCCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS TCA 90 bp | GCTCAGGGTCCACCAGCACAACACCATCTACAGGCTCTACTTGGCTaGCGTGGTCTACATAGTCTCTCTTCCCCAGGTAGATGGTCACCG | + |
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Preference number: 5 (lower is better) Translates to: AQGPPAQHHLQALLG*RGLHSLSSPGRWSP Trigger: CGGTGACCATCTACCTGGGGAAGAGAGACTATGTAGACCACGTCAGCCAAGTAGAGCCTGTAGATGGTGTTGTGCTGGTGGACCCTGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS CCA 90 bp | AGAAAGGGGTACGTGTTGTCTCCCAGTTTCTTGAGCAGGCTCTCTTaGAGTTGGGTGAGGACACTCATGGCCCCAACAGGAGGGTATACC | + |
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Preference number: 5 (lower is better) Translates to: RKGYVLSPSFLSRLS*SWVRTLMAPTGGYT Trigger: GGTATACCCTCCTGTTGGGGCCATGAGTGTCCTCACCCAACTCCAAGAGAGCCTGCTCAAGAAACTGGGAGACAACACGTACCCCTTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS-3UTR CAA 90 bp | GCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACCTTGAGCAGGCTCTCTaGGAGTTGGGTGAGGACACT | + |
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Preference number: 5 (lower is better) Translates to: ALISSITLRVYRGLPSRHLEQAL*ELGEDT Trigger: AGTGTCCTCACCCAACTCCAAGAGAGCCTGCTCAAG...GTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CAA 90 bp | TTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACCCGCCTGAACACTTTCTTTaGCTGGATCCTCAGGCTGCG | + |
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Preference number: 5 (lower is better) Translates to: LISSITLRVYRGLPSRHPPEHFL*LDPQAA Trigger: CGCAGCCTGAGGATCCAGCAAAAGAAAGTGTTCAGG...CGGGTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS CCA 90 bp | AAACTCTTCAAAAACCAAATTTTCATCCTGAACACTCTCAGAAGCTaGATCCTCAGGCTGCGGGTGCATGAGGCGGAACGGCACCTCGGT | + |
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Preference number: 5 (lower is better) Translates to: KLFKNQIFILNTLRS*ILRLRVHEAERHLG Trigger: ACCGAGGTGCCGTTCCGCCTCATGCACCCGCAGCCTGAGGATCCAGCTTCTGAGAGTGTTCAGGATGAAAATTTGGTTTTTGAAGAGTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000177757.2 |
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| CDS-3UTR CAA 90 bp | AATGCTCATGCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAACCCCACAGCTCTaGCCTACATCCTGGGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: NAHALISSITLRVYRGLPSTPQL*PTSWGA Trigger: AGCTCCCCAGGATGTAGGCAAGAGCTGTGGGGTTGA...GGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGCATGAGCATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CAA 90 bp | GCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGCACCTCTTCTTGGGGATCTaGTCCTCCTCAGGATCTGTG | + |
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Preference number: 5 (lower is better) Translates to: ALISSITLRVYRGLPSRHLFLGI*SSSGSV Trigger: CACAGATCCTGAGGAGGACAAGATCCCCAAGAAGAG...GTGCCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CAA 90 bp | CATGCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGGAGAGGTTCAGGGGCTaGTCAGACATGAAGAACTGC | + |
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Preference number: 5 (lower is better) Translates to: HALISSITLRVYRGLPSRERFRG*SDMKNC Trigger: GCAGTTCTTCATGTCTGACAAGCCCCTGAACCTCTC...CCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGCATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CAA 90 bp | CATGCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTCAAGGACCGTGAGCTTCACCTaGATATGGTATGACACCAGG | + |
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Preference number: 5 (lower is better) Translates to: HALISSITLRVYRGLPSRTVSFT*IWYDTR Trigger: CCTGGTGTCATACCATATCAAGGTGAAGCTCACGGT...CCTTGAGGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGCATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS-3UTR CAA 90 bp | AATGCTCATGCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCTGGTCAAAGTGCTGTTaGGCTGCACTTTTTCTTGTG | + |
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Preference number: 5 (lower is better) Translates to: NAHALISSITLRVYRGLPWSKCC*AALFLV Trigger: CACAAGAAAAAGTGCAGCCAAACAGCACTTTGACCA...GGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGCATGAGCATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS TCA 90 bp | TGTTTGGCTGCACTTTTTCTTGTGTTTCCTCCGAGGCTACAGGCTTaGCGTAATAGTCACTTGAGTAGAGAACCACATTGGCTATCTGTT | + |
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Preference number: 5 (lower is better) Translates to: CLAALFLVFPPRLQA*RNSHLSREPHWLSV Trigger: AACAGATAGCCAATGTGGTTCTCTACTCAAGTGACTATTACGTCAAGCCTGTAGCCTCGGAGGAAACACAAGAAAAAGTGCAGCCAAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS-3UTR CAA 90 bp | AATGCTCATGCTTTGATATCTAGCATAACTTTGAGAGTCTACCGGGGGCTTCCCAGTATCTTTCAGATTTaGGCGAGCAAACTCTTCAAA | + |
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Preference number: 5 (lower is better) Translates to: NAHALISSITLRVYRGLPSIFQI*ASKLFK Trigger: TTTGAAGAGTTTGCTCGCCAAAATCTGAAAGATACT...GGGAAGCCCCCGGTAGACTCTCAAAGTTATGCTAGATATCAAAGCATGAGCATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077772.12 |
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| CDS GCA 72 bp | GCACTGGGCTGGGGACCCATCTCAGGTGGGGCATGCTaGACTTTCCGGATCAGTAACCGCACAGAGCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: ALGWGPISGGAC*TFRISNRTELF Trigger: GAAGAGCTCTGTGCGGTTACTGATCCGGAAAGTGCAGCATGCCCCACCTGAGATGGGTCCCCAGCCCAGTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS GCA 72 bp | TCAGCACTGGGCTGGGGACCCATCTCAGGTGGGGCATaGTGCACTTTCCGGATCAGTAACCGCACAGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: SALGWGPISGGA*CTFRISNRTEL Trigger: GAGCTCTGTGCGGTTACTGATCCGGAAAGTGCAGCATGCCCCACCTGAGATGGGTCCCCAGCCCAGTGCTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS CAA 90 bp | GGGGTACGTGTTGTCTCCCAGTTTCTTGAGCAGGCTCTCTTGGAGTaGGGTGAGGACACTCATGGCCCCAACAGGAGGGTATACCTGGAC | + |
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Preference number: 6 (lower is better) Translates to: GVRVVSQFLEQALLE*GEDTHGPNRRVYLD Trigger: GTCCAGGTATACCCTCCTGTTGGGGCCATGAGTGTCCTCACCCAACTCCAAGAGAGCCTGCTCAAGAAACTGGGAGACAACACGTACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS TCA 72 bp | AAAGCCCGACACCGTGAGCTTCACCTTGATATGGTATaGCACCAGGATCCCCATGACGGTCCGGTCGATGCC | + |
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Preference number: 6 (lower is better) Translates to: KARHRELHLDMV*HQDPHDGPVDA Trigger: GGCATCGACCGGACCGTCATGGGGATCCTGGTGTCATACCATATCAAGGTGAAGCTCACGGTGTCGGGCTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS CCA 72 bp | GTGAGGACACTCATGGCCCCAACAGGAGGGTATACCTaGACCCGAGAAAAATACAGGTCCCTGCGGAAGGTC | + |
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Preference number: 6 (lower is better) Translates to: VRTLMAPTGGYT*TREKYRSLRKV Trigger: GACCTTCCGCAGGGACCTGTATTTTTCTCGGGTCCAGGTATACCCTCCTGTTGGGGCCATGAGTGTCCTCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS CAA 72 bp | GTACGTGTTGTCTCCCAGTTTCTTGAGCAGGCTCTCTaGGAGTTGGGTGAGGACACTCATGGCCCCAACAGG | + |
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Preference number: 6 (lower is better) Translates to: VRVVSQFLEQAL*ELGEDTHGPNR Trigger: CCTGTTGGGGCCATGAGTGTCCTCACCCAACTCCAAGAGAGCCTGCTCAAGAAACTGGGAGACAACACGTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS CAA 90 bp | CAGAAAGGGGTACGTGTTGTCTCCCAGTTTCTTGAGCAGGCTCTCTaGGAGTTGGGTGAGGACACTCATGGCCCCAACAGGAGGGTATAC | + |
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Preference number: 6 (lower is better) Translates to: QKGVRVVSQFLEQAL*ELGEDTHGPNRRVY Trigger: GTATACCCTCCTGTTGGGGCCATGAGTGTCCTCACCCAACTCCAAGAGAGCCTGCTCAAGAAACTGGGAGACAACACGTACCCCTTTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS CCA 72 bp | TTGGTCACGGTCACAGTCACGGGGATGGGCTCCCCATaGAAATATATCTCTTTGCTGAGGGAGACTGAGAGG | + |
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Preference number: 6 (lower is better) Translates to: LVTVTVTGMGSP*KYISLLRETER Trigger: CCTCTCAGTCTCCCTCAGCAAAGAGATATATTTCCATGGGGAGCCCATCCCCGTGACTGTGACCGTGACCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS CAA 90 bp | GGGGCATGCTGCACTTTCCGGATCAGTAACCGCACAGAGCTCTTCTaGGGGATCTTGTCCTCCTCAGGATCTGTGATGTCTGAGGCAAAT | + |
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Preference number: 6 (lower is better) Translates to: GACCTFRISNRTELF*GILSSSGSVMSEAN Trigger: ATTTGCCTCAGACATCACAGATCCTGAGGAGGACAAGATCCCCAAGAAGAGCTCTGTGCGGTTACTGATCCGGAAAGTGCAGCATGCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS CCA 72 bp | GGGCACCAGCACCAGTGTCTTGGTCAAAGTGCTGTTTaGCTGCACTTTTTCTTGTGTTTCCTCCGAGGCTAC | + |
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Preference number: 6 (lower is better) Translates to: GHQHQCLGQSAV*LHFFLCFLRGY Trigger: GTAGCCTCGGAGGAAACACAAGAAAAAGTGCAGCCAAACAGCACTTTGACCAAGACACTGGTGCTGGTGCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS CAA 90 bp | TCATGCTTGATCTTCCCATCCAGCGCGATGCCTCTTCTTTCTCTGTaGTTAGCCAGTAGGGGCACCAGCACCAGTGTCTTGGTCAAAGTG | + |
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Preference number: 6 (lower is better) Translates to: SCLIFPSSAMPLLSL*LASRGTSTSVLVKV Trigger: CACTTTGACCAAGACACTGGTGCTGGTGCCCCTACTGGCTAACAACAGAGAAAGAAGAGGCATCGCGCTGGATGGGAAGATCAAGCATGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS CCA 72 bp | AAAAACCAAATTTTCATCCTGAACACTCTCAGAAGCTaGATCCTCAGGCTGCGGGTGCATGAGGCGGAACGG | + |
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Preference number: 6 (lower is better) Translates to: KNQIFILNTLRS*ILRLRVHEAER Trigger: CCGTTCCGCCTCATGCACCCGCAGCCTGAGGATCCAGCTTCTGAGAGTGTTCAGGATGAAAATTTGGTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000177757.2 |
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| CDS CAA 72 bp | CGGATCAGTAACCGCACAGAGCTCTTCTTGGGGATCTaGTCCTCCTCAGGATCTGTGATGTCTGAGGCAAAT | + |
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Preference number: 6 (lower is better) Translates to: RISNRTELFLGI*SSSGSVMSEAN Trigger: ATTTGCCTCAGACATCACAGATCCTGAGGAGGACAAGATCCCCAAGAAGAGCTCTGTGCGGTTACTGATCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS CAA 72 bp | GATACTTTAATCTTCTTCACAACCTTGTCGGTGTTGTaGGTCACGGTCACAGTCACGGGGATGGGCTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: DTLIFFTTLSVL*VTVTVTGMGSP Trigger: TGGGGAGCCCATCCCCGTGACTGTGACCGTGACCAACAACACCGACAAGGTTGTGAAGAAGATTAAAGTATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS TCA 72 bp | GCAACATCACTGAACAGGGTAGGTAGTCAGGAAACGTaGGCAGAAAGGGGTACGTGTTGTCTCCCAGTTTCT | + |
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Preference number: 6 (lower is better) Translates to: ATSLNRVGSQET*AERGTCCLPVS Trigger: AGAAACTGGGAGACAACACGTACCCCTTTCTGCTCACGTTTCCTGACTACCTACCCTGTTCAGTGATGTTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS CAA 72 bp | ACTGATACTTTAATCTTCTTCACAACCTTGTCGGTGTaGTTGGTCACGGTCACAGTCACGGGGATGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: TDTLIFFTTLSV*LVTVTVTGMGS Trigger: GGAGCCCATCCCCGTGACTGTGACCGTGACCAACAACACCGACAAGGTTGTGAAGAAGATTAAAGTATCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS CAA 90 bp | ACATTGGCTATCTGTTCCACTGATACTTTAATCTTCTTCACAACCTaGTCGGTGTTGTTGGTCACGGTCACAGTCACGGGGATGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: TLAICSTDTLIFFTT*SVLLVTVTVTGMGS Trigger: GGAGCCCATCCCCGTGACTGTGACCGTGACCAACAACACCGACAAGGTTGTGAAGAAGATTAAAGTATCAGTGGAACAGATAGCCAATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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| CDS TCA 72 bp | GCACTTTTTCTTGTGTTTCCTCCGAGGCTACAGGCTTaGCGTAATAGTCACTTGAGTAGAGAACCACATTGG | + |
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Preference number: 6 (lower is better) Translates to: ALFLVFPPRLQA*RNSHLSREPHW Trigger: CCAATGTGGTTCTCTACTCAAGTGACTATTACGTCAAGCCTGTAGCCTCGGAGGAAACACAAGAAAAAGTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077772.12 ENSMUST00000177757.2 |
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