Pregenerated sensors for SAA4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040017Ensembl transcript IDs: ENSMUST00000006952.9
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTCCATCCCACAGGCTCCATCCATCCTCCCCACGTTTCTTTCTCTaGTCCTGTGGAGTTAGTCTTCCGCCTAGGGACCTGGCTTTGGCA | + |
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Preference number: 1 (lower is better) Translates to: PPSHRLHPSSPRFFL*SCGVSLPPRDLALA Trigger: TGCCAAAGCCAGGTCCCTAGGCGGAAGACTAACTCCACAGGAGCAGAGAAAGAAACGTGGGGAGGATGGATGGAGCCTGTGGGATGGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR GCA 90 bp | CCCAGGGCTTATCTCAGAGCAAACTCCACTTTTCAGAGAAGCCCCTaGATGGTGGGCAATGCTTTGCTAGCTCAAGCCTGCTTAGCAGAC | + |
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Preference number: 1 (lower is better) Translates to: PRAYLRANSTFQRSP*MVGNALLAQACLAD Trigger: GTCTGCTAAGCAGGCTTGAGCTAGCAAAGCATTGCCCACCATGCAGGGGCTTCTCTGAAAAGTGGAGTTTGCTCTGAGATAAGCCCTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR TCA 90 bp | AAACTGACCTCAAATTCAAATTCAATACATAGCCAGGGCTGGCCTTaGACTTCTGGTCTGTCAGCCTCTGTCTGCCTCCCCAGTGCTAGG | + |
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Preference number: 1 (lower is better) Translates to: KLTSNSNSIHSQGWP*TSGLSASVCLPSAR Trigger: CCTAGCACTGGGGAGGCAGACAGAGGCTGACAGACCAGAAGTTCAAGGCCAGCCCTGGCTATGTATTGAATTTGAATTTGAGGTCAGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR GCA 90 bp | GCACGCTTAGCAAGCACTATACCAAACGATATCCCTGGTCCCCAGTaGAGTTTCCAAGTTAGAGTTCCCAAGGCTAAGATGAGGCATTCT | + |
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Preference number: 1 (lower is better) Translates to: ARLASTIPNDIPGPQ*SFQVRVPKAKMRHS Trigger: AGAATGCCTCATCTTAGCCTTGGGAACTCTAACTTGGAAACTGCACTGGGGACCAGGGATATCGTTTGGTATAGTGCTTGCTAAGCGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR CCA 90 bp | GAATCTCCGTCTTCATCCGTGCCTTCTCGTCCCTACAAACCAGACTaGCCTTCTCTAGAAGAATGCCTTTGCTTTATGAGGGAACCAATT | + |
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Preference number: 1 (lower is better) Translates to: ESPSSSVPSRPYKPD*PSLEECLCFMREPI Trigger: AATTGGTTCCCTCATAAAGCAAAGGCATTCTTCTAGAGAAGGCCAGTCTGGTTTGTAGGGACGAGAAGGCACGGATGAAGACGGAGATTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR TCA 90 bp | TGTGTGTACACTTTATGGGGACAGAGGGTCTCATGTATCCCAAACTaGCCTCAAATTCAAATTCAATACATAGCCAGGGCTGGCCTTGAA | + |
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Preference number: 1 (lower is better) Translates to: CVYTLWGQRVSCIPN*PQIQIQYIARAGLE Trigger: TTCAAGGCCAGCCCTGGCTATGTATTGAATTTGAATTTGAGGTCAGTTTGGGATACATGAGACCCTCTGTCCCCATAAAGTGTACACACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR-3UTR CCA 90 bp | GTTTCTTTCTCTGCTCCTGTGGAGTTAGTCTTCCGCCTAGGGACCTGGCTTTGGCTGGCCTTGAACTTCTaGTCTGTCAGCCTCTGTCTG | + |
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Preference number: 2 (lower is better) Translates to: VSFSAPVELVFRLGTWLWLALNF*SVSLCL Trigger: CAGACAGAGGCTGACAGACCAGAAGTTCAAGGCCAG...CCAAAGCCAGGTCCCTAGGCGGAAGACTAACTCCACAGGAGCAGAGAAAGAAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR CAA 90 bp | GCAAACTCCACTTTTCAGAGAAGCCCCTGCATGGTGGGCAATGCTTaGCTAGCTCAAGCCTGCTTAGCAGACGTTGGTGTGGTTAAAGGC | + |
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Preference number: 2 (lower is better) Translates to: ANSTFQRSPCMVGNA*LAQACLADVGVVKG Trigger: GCCTTTAACCACACCAACGTCTGCTAAGCAGGCTTGAGCTAGCAAAGCATTGCCCACCATGCAGGGGCTTCTCTGAAAAGTGGAGTTTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR CAA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTaGGTGTGTGTGTGTGTTGGTGTGTGTGGGGGTCATGGTGTATGT | + |
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Preference number: 2 (lower is better) Translates to: VCVCVCVCVCVCVCV*VCVCVGVCGGHGVC Trigger: ACATACACCATGACCCCCACACACACCAACACACACACACACCAACACACACACACACACACACACACACACACACACACACACACACAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR-3UTR GCA 90 bp | CTGTCAGCCTCTGTCTGCCTCCCCAGTGCTAGGATTATAAATGTATACCATCACAGGCTAGAGCAGATCTaGTGGGGTTGTGTGAGGGAC | + |
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Preference number: 2 (lower is better) Translates to: LSASVCLPSARIINVYHHRLEQI*WGCVRD Trigger: GTCCCTCACACAACCCCAGCAGATCTGCTCTAGCCT...GTGATGGTATACATTTATAATCCTAGCACTGGGGAGGCAGACAGAGGCTGACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR-3UTR GCA 90 bp | GTTTCTTTCTCTGCTCCTGTGGAGTTAGTCTTCCGCCTAGGGACCTGGCTTTGGATCCCTGGTCCCCAGTaGAGTTTCCAAGTTAGAGTT | + |
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Preference number: 2 (lower is better) Translates to: VSFSAPVELVFRLGTWLWIPGPQ*SFQVRV Trigger: AACTCTAACTTGGAAACTGCACTGGGGACCAGGGAT...CCAAAGCCAGGTCCCTAGGCGGAAGACTAACTCCACAGGAGCAGAGAAAGAAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR-3UTR CCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTACACTTTATGGGGACAGAGGGTCTCATGTATCGTTGTGACCAGAAGATaGTGGGGTAGGGAGACACCT | + |
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Preference number: 2 (lower is better) Translates to: VCVCVCVYTLWGQRVSCIVVTRR*WGRETP Trigger: AGGTGTCTCCCTACCCCACCATCTTCTGGTCACAAC...GATACATGAGACCCTCTGTCCCCATAAAGTGTACACACACACACACACACACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR-3UTR GCA 90 bp | TCAGCCTCTGTCTGCCTCCCCAGTGCTAGGATTATAAATGTATACCATCACCAGTTTCAGAGAAGCCCCTaGATGGTGGGCAATGCTTTG | + |
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Preference number: 2 (lower is better) Translates to: SASVCLPSARIINVYHHQFQRSP*MVGNAL Trigger: CAAAGCATTGCCCACCATGCAGGGGCTTCTCTGAAA...CTGGTGATGGTATACATTTATAATCCTAGCACTGGGGAGGCAGACAGAGGCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR-3UTR CCA 90 bp | CTTCATGGTTTGAGGCCATTACCTGGTGGTCACACCTTTTTCCTCTGCTTATTTTGGCAAAGTGTTTACTaGGCATCTCTAGCTTCTCCG | + |
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Preference number: 2 (lower is better) Translates to: LHGLRPLPGGHTFFLCLFWQSVY*ASLASP Trigger: CGGAGAAGCTAGAGATGCCCAGTAAACACTTTGCCA...AAATAAGCAGAGGAAAAAGGTGTGACCACCAGGTAATGGCCTCAAACCATGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR-3UTR GCA 90 bp | GCACTATACCAAACGATATCCCTGGTCCCCAGTGCAGTTTCCAAGTTAGAGTTCCACACCTTTTTCCTCTaGTTATTTTCTGTGATCCAT | + |
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Preference number: 2 (lower is better) Translates to: ALYQTISLVPSAVSKLEFHTFFL*LFSVIH Trigger: ATGGATCACAGAAAATAAGCAGAGGAAAAAGGTGTG...GAACTCTAACTTGGAAACTGCACTGGGGACCAGGGATATCGTTTGGTATAGTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR-3UTR TCA 90 bp | TTCATTTACTCCCGCTCAGTGATGTTGTGTCTTGCTTCCCTTCTAGAGCGGAAATCTGCTTATTTTCTGTaGTCCATAGCAACTCTTTCT | + |
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Preference number: 2 (lower is better) Translates to: FIYSRSVMLCLASLLERKSAYFL*SIATLS Trigger: AGAAAGAGTTGCTATGGATCACAGAAAATAAGCAGA...TTTCCGCTCTAGAAGGGAAGCAAGACACAACATCACTGAGCGGGAGTAAATGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR TCA 72 bp | GTAGGGAGACACCTGACCAGTGTCCAGGGGAGAAGTTaGTGGGCAGGTTCCCAGGGCTTATCTCAGAGCAAA | + |
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Preference number: 3 (lower is better) Translates to: VGRHLTSVQGRS*WAGSQGLSQSK Trigger: TTTGCTCTGAGATAAGCCCTGGGAACCTGCCCATCAACTTCTCCCCTGGACACTGGTCAGGTGTCTCCCTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR GCA 72 bp | CTCCACTTTTCAGAGAAGCCCCTGCATGGTGGGCAATaGTTTGCTAGCTCAAGCCTGCTTAGCAGACGTTGG | + |
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Preference number: 3 (lower is better) Translates to: LHFSEKPLHGGQ*FASSSLLSRRW Trigger: CCAACGTCTGCTAAGCAGGCTTGAGCTAGCAAAGCATTGCCCACCATGCAGGGGCTTCTCTGAAAAGTGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR CCA 72 bp | GTACCAATAAAACAGAGACCGGTTGTGACCAGAAGATaGTGGGGTAGGGAGACACCTGACCAGTGTCCAGGG | + |
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Preference number: 3 (lower is better) Translates to: VPIKQRPVVTRR*WGRETPDQCPG Trigger: CCCTGGACACTGGTCAGGTGTCTCCCTACCCCACCATCTTCTGGTCACAACCGGTCTCTGTTTTATTGGTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR TCA 72 bp | TCTCTAGCTTCTCCGTGCTTCTTGTGGACACCAAGCTaGGTGACTATCACAGAGAGAGGCTTGTGGCTCACA | + |
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Preference number: 3 (lower is better) Translates to: SLASPCFLWTPS*VTITERGLWLT Trigger: TGTGAGCCACAAGCCTCTCTCTGTGATAGTCACTCAGCTTGGTGTCCACAAGAAGCACGGAGAAGCTAGAGA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR GCA 72 bp | TATCTCAGAGCAAACTCCACTTTTCAGAGAAGCCCCTaGATGGTGGGCAATGCTTTGCTAGCTCAAGCCTGC | + |
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Preference number: 3 (lower is better) Translates to: YLRANSTFQRSP*MVGNALLAQAC Trigger: GCAGGCTTGAGCTAGCAAAGCATTGCCCACCATGCAGGGGCTTCTCTGAAAAGTGGAGTTTGCTCTGAGATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR TCA 72 bp | TCAAATTCAAATTCAATACATAGCCAGGGCTGGCCTTaGACTTCTGGTCTGTCAGCCTCTGTCTGCCTCCCC | + |
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Preference number: 3 (lower is better) Translates to: SNSNSIHSQGWP*TSGLSASVCLP Trigger: GGGGAGGCAGACAGAGGCTGACAGACCAGAAGTTCAAGGCCAGCCCTGGCTATGTATTGAATTTGAATTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR GCA 72 bp | GCAAGCACTATACCAAACGATATCCCTGGTCCCCAGTaGAGTTTCCAAGTTAGAGTTCCCAAGGCTAAGATG | + |
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Preference number: 3 (lower is better) Translates to: ASTIPNDIPGPQ*SFQVRVPKAKM Trigger: CATCTTAGCCTTGGGAACTCTAACTTGGAAACTGCACTGGGGACCAGGGATATCGTTTGGTATAGTGCTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR CCA 72 bp | TCTTCATCCGTGCCTTCTCGTCCCTACAAACCAGACTaGCCTTCTCTAGAAGAATGCCTTTGCTTTATGAGG | + |
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Preference number: 3 (lower is better) Translates to: SSSVPSRPYKPD*PSLEECLCFMR Trigger: CCTCATAAAGCAAAGGCATTCTTCTAGAGAAGGCCAGTCTGGTTTGTAGGGACGAGAAGGCACGGATGAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR CCA 72 bp | TTGTGTGAGGGACCTTCATGGTTTGAGGCCATTACCTaGTGGTCACACCTTTTTCCTCTGCTTATTTTCTGT | + |
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Preference number: 3 (lower is better) Translates to: LCEGPSWFEAIT*WSHLFPLLIFC Trigger: ACAGAAAATAAGCAGAGGAAAAAGGTGTGACCACCAGGTAATGGCCTCAAACCATGAAGGTCCCTCACACAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR GCA 72 bp | TTGAGGCCATTACCTGGTGGTCACACCTTTTTCCTCTaGTTATTTTCTGTGATCCATAGCAACTCTTTCTCC | + |
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Preference number: 3 (lower is better) Translates to: LRPLPGGHTFFL*LFSVIHSNSFS Trigger: GGAGAAAGAGTTGCTATGGATCACAGAAAATAAGCAGAGGAAAAAGGTGTGACCACCAGGTAATGGCCTCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR GCA 72 bp | TACAAACCAGACTGGCCTTCTCTAGAAGAATGCCTTTaGTTTATGAGGGAACCAATTCATTTACTCCCGCTC | + |
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Preference number: 3 (lower is better) Translates to: YKPDWPSLEECL*FMREPIHLLPL Trigger: GAGCGGGAGTAAATGAATTGGTTCCCTCATAAAGCAAAGGCATTCTTCTAGAGAAGGCCAGTCTGGTTTGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR GCA 72 bp | CGTCCCTACAAACCAGACTGGCCTTCTCTAGAAGAATaGCTTTGCTTTATGAGGGAACCAATTCATTTACTC | + |
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Preference number: 3 (lower is better) Translates to: RPYKPDWPSLEE*LCFMREPIHLL Trigger: GAGTAAATGAATTGGTTCCCTCATAAAGCAAAGGCATTCTTCTAGAGAAGGCCAGTCTGGTTTGTAGGGACG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| CDS-3UTR TCA 90 bp | GGGCTTATCTCAGAGCAAACTCCACTTTTCAGAGAAGCCCCTGCATGGTGGGCAACCAGCCATCACCACTaGCTCCCAGGAACAAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: GLISEQTPLFREAPAWWATSHHH*LPGTKN Trigger: GTTCTTTGTTCCTGGGAGTCAGTGGTGATGGCTGGT...TGCCCACCATGCAGGGGCTTCTCTGAAAAGTGGAGTTTGCTCTGAGATAAGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| CDS-3UTR TCA 90 bp | TCTCAGAGCAAACTCCACTTTTCAGAGAAGCCCCTGCATGGTGGGCAATGCTTTCCCTCGGGTCGGAAGTaGTTGGGGTTTTTGCCACTG | + |
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Preference number: 4 (lower is better) Translates to: SQSKLHFSEKPLHGGQCFPSGRK*LGFLPL Trigger: CAGTGGCAAAAACCCCAATCACTTCCGACCCGAGGG...AAAGCATTGCCCACCATGCAGGGGCTTCTCTGAAAAGTGGAGTTTGCTCTGAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| CDS-3UTR TCA 90 bp | GGGCTTATCTCAGAGCAAACTCCACTTTTCAGAGAAGCCCCTGCATGGTGGGCACTTGTACGGCTTCCCTaGAGAATGAATACCAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: GLISEQTPLFREAPAWWALVRLP*RMNTSH Trigger: ATGGCTGGTATTCATTCTTCAGGGAAGCCGTACAAG...TGCCCACCATGCAGGGGCTTCTCTGAAAAGTGGAGTTTGCTCTGAGATAAGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| CDS-3UTR TCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACTTTATGGGGACAGGCTTCCCTGAAGAATaGATACCAGCCATCACCACT | + |
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Preference number: 4 (lower is better) Translates to: VCVCVCVCVCVCVHFMGTGFPEE*IPAITT Trigger: AGTGGTGATGGCTGGTATTCATTCTTCAGGGAAGCC...TGTCCCCATAAAGTGTACACACACACACACACACACACACACACACACACACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| CDS-3UTR TCA 90 bp | TCTCAGAGCAAACTCCACTTTTCAGAGAAGCCCCTGCATGGTGGGCAATGCTTTCCAATCCATGGTTCCTaGTTCCAAAATAATATCGGT | + |
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Preference number: 4 (lower is better) Translates to: SQSKLHFSEKPLHGGQCFPIHGS*FQNNIG Trigger: ACCGATATTATTTTGGAATCAGGAACCATGGATTGG...AAAGCATTGCCCACCATGCAGGGGCTTCTCTGAAAAGTGGAGTTTGCTCTGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| 3UTR CAA 72 bp | GTGTCTTGCTTCCCTTCTAGAGCGGAAAGCAGACTTTaGTTTCGATCAAAAGACAATGAGAATAAAGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: VSCFPSRAESRL*FRSKDNENKAK Trigger: CTTGGCTTTATTCTCATTGTCTTTTGATCGAAACAAAAGTCTGCTTTCCGCTCTAGAAGGGAAGCAAGACAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| CDS-3UTR CAA 90 bp | CACTTTTCAGAGAAGCCCCTGCATGGTGGGCAATGCTTTGCTAGCTCAAGCCTGCCCAGAGCCCCTCTGTaGGGCCTCGTAGTTCCCACG | + |
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Preference number: 5 (lower is better) Translates to: HFSEKPLHGGQCFASSSLPRAPL*GLVVPT Trigger: CGTGGGAACTACGAGGCCCAACAGAGGGGCTCTGGG...CAGGCTTGAGCTAGCAAAGCATTGCCCACCATGCAGGGGCTTCTCTGAAAAGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| CDS CCA 72 bp | GGGTTTTTGCCACTGCGGCCCCATTCCTCGGCTTTCTaGGTAGCCTGCAGGGTTTCCAATCCATGGTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: GFLPLRPHSSAF*VACRVSNPWFL Trigger: CAGGAACCATGGATTGGAAACCCTGCAGGCTACCCAGAAAGCCGAGGAATGGGGCCGCAGTGGCAAAAACCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| CDS GCA 72 bp | CCACTGCGGCCCCATTCCTCGGCTTTCTGGGTAGCCTaGAGGGTTTCCAATCCATGGTTCCTGATTCCAAAA | + |
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Preference number: 6 (lower is better) Translates to: PLRPHSSAFWVA*RVSNPWFLIPK Trigger: TTTTGGAATCAGGAACCATGGATTGGAAACCCTGCAGGCTACCCAGAAAGCCGAGGAATGGGGCCGCAGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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| CDS TCA 72 bp | CAAGTCCCAAGTCCCTTGTACGGCTTCCCTGAAGAATaGATACCAGCCATCACCACTGACTCCCAGGAACAA | + |
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Preference number: 6 (lower is better) Translates to: QVPSPLYGFPEE*IPAITTDSQEQ Trigger: TTGTTCCTGGGAGTCAGTGGTGATGGCTGGTATTCATTCTTCAGGGAAGCCGTACAAGGGACTTGGGACTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006952.9 |
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