Pregenerated sensors for SAA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040026Ensembl transcript IDs: ENSMUST00000006956.9, ENSMUST00000210913.2
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACCGCAGCCACAGTTCTTGCCTAGCACAAAGCAATGGGAGAAACTaGTCTCCAGGCAGAGAGAGTGAGCGCAGCTCTGTTCTGAGTCCA | + |
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Preference number: 1 (lower is better) Translates to: HRSHSSCLAQSNGRN*SPGRESERSSVLSP Trigger: TGGACTCAGAACAGAGCTGCGCTCACTCTCTCTGCCTGGAGAGCAGTTTCTCCCATTGCTTTGTGCTAGGCAAGAACTGTGGCTGCGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR TCA 90 bp | GGAGAAACTGCTCTCCAGGCAGAGAGAGTGAGCGCAGCTCTGTTCTaGGTCCACCTGGATGTCCAGGATCTATTTCCCCCAAGCAGTTCT | + |
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Preference number: 1 (lower is better) Translates to: GETALQAERVSAALF*VHLDVQDLFPPSSS Trigger: AGAACTGCTTGGGGGAAATAGATCCTGGACATCCAGGTGGACTCAGAACAGAGCTGCGCTCACTCTCTCTGCCTGGAGAGCAGTTTCTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR TCA 90 bp | CCTAGCACAAAGCAATGGGAGAAACTGCTCTCCAGGCAGAGAGAGTaGGCGCAGCTCTGTTCTGAGTCCACCTGGATGTCCAGGATCTAT | + |
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Preference number: 1 (lower is better) Translates to: PSTKQWEKLLSRQRE*AQLCSESTWMSRIY Trigger: ATAGATCCTGGACATCCAGGTGGACTCAGAACAGAGCTGCGCTCACTCTCTCTGCCTGGAGAGCAGTTTCTCCCATTGCTTTGTGCTAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR TCA 90 bp | TTTCCTTTAGAGACAGCCTATGTCTCTGTGTATCCCTGGATGGCCTaGAACTCACAATCCTTCTGCCTCGGCCTCCCAAACGCTACAGTT | + |
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Preference number: 1 (lower is better) Translates to: FPLETAYVSVYPWMA*NSQSFCLGLPNATV Trigger: AACTGTAGCGTTTGGGAGGCCGAGGCAGAAGGATTGTGAGTTTCAGGCCATCCAGGGATACACAGAGACATAGGCTGTCTCTAAAGGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR CCA 90 bp | TGGGGAGTCTACATCTTTGACCTACAGATTTCACCTACATTCCCGTaGAAAGACTGCTGTACAAACATTACAGGATCTGAGATTTGGGAT | + |
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Preference number: 1 (lower is better) Translates to: WGVYIFDLQISPTFP*KDCCTNITGSEIWD Trigger: ATCCCAAATCTCAGATCCTGTAATGTTTGTACAGCAGTCTTTCCACGGGAATGTAGGTGAAATCTGTAGGTCAAAGATGTAGACTCCCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR GCA 90 bp | TACATCTTTGACCTACAGATTTCACCTACATTCCCGTGGAAAGACTaGTGTACAAACATTACAGGATCTGAGATTTGGGATCCTCACAGA | + |
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Preference number: 1 (lower is better) Translates to: YIFDLQISPTFPWKD*CTNITGSEIWDPHR Trigger: TCTGTGAGGATCCCAAATCTCAGATCCTGTAATGTTTGTACAGCAGTCTTTCCACGGGAATGTAGGTGAAATCTGTAGGTCAAAGATGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR GCA 90 bp | CCACAAACAGAAGGAAGATCTAAACTAAGGACCAGGAGAGTGAGCTaGACACTGAAGGAATCAGATCCAGCTAATGATAAATGGGAAATA | + |
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Preference number: 1 (lower is better) Translates to: PQTEGRSKLRTRRVS*TLKESDPANDKWEI Trigger: TATTTCCCATTTATCATTAGCTGGATCTGATTCCTTCAGTGTGCAGCTCACTCTCCTGGTCCTTAGTTTAGATCTTCCTTCTGTTTGTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR TCA 90 bp | GAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAGTCTGACTGACTaGCTGTCTTTTGTTGTCTTATGGCTGGTGGGCTATATTTCCCTT | + |
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Preference number: 1 (lower is better) Translates to: ERERERKKERKSLTD*LSFVVLWLVGYISL Trigger: AAGGGAAATATAGCCCACCAGCCATAAGACAACAAAAGACAGTCAGTCAGTCAGACTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR TCA 90 bp | CAGACTGCCACAAGCAGGATGATTGACACTCTGGTGGCAATGGACACACTAGGTCCCTGGTCTACAAGGTaGGTCCAGGACAGCCAGGGC | + |
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Preference number: 2 (lower is better) Translates to: QTATSRMIDTLVAMDTLGPWSTR*VQDSQG Trigger: GCCCTGGCTGTCCTGGACTCACCTTGTAGACCAGGG...ACCTAGTGTGTCCATTGCCACCAGAGTGTCAATCATCCTGCTTGTGGCAGTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CCA 90 bp | AACTCACAATCCTTCTGCCTCGGCCTCCCAAACGCTACAGTTACCACCGCAGCCGGAGGCAGAGGCAGATaGATCTCTGTGAATGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: NSQSFCLGLPNATVTTAAGGRGR*ISVNGR Trigger: CCTCCCATTCACAGAGATCCATCTGCCTCTGCCTCC...GGCTGCGGTGGTAACTGTAGCGTTTGGGAGGCCGAGGCAGAAGGATTGTGAGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR GCA 90 bp | AACTCACAATCCTTCTGCCTCGGCCTCCCAAACGCTACAGTTACCACCGCAGCCAGGAACAGGGAAGAGTaGTATCCACCATGGTGCTTA | + |
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Preference number: 2 (lower is better) Translates to: NSQSFCLGLPNATVTTAARNREE*YPPWCL Trigger: TAAGCACCATGGTGGATAGCACTCTTCCCTGTTCCT...GGCTGCGGTGGTAACTGTAGCGTTTGGGAGGCCGAGGCAGAAGGATTGTGAGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CCA 90 bp | CTGAAACTCACAATCCTTCTGCCTCGGCCTCCCAAACGCTACAGTTACCACCGCGAGGCTGAGTTGTGGTaGCACACACCTTTAATCCCA | + |
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Preference number: 2 (lower is better) Translates to: LKLTILLPRPPKRYSYHREAELW*HTPLIP Trigger: TGGGATTAAAGGTGTGTGCCACCACAACTCAGCCTC...GCGGTGGTAACTGTAGCGTTTGGGAGGCCGAGGCAGAAGGATTGTGAGTTTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR GCA 90 bp | GAGGTAACAAGGGGAACGTCTCTGCCACAGACTGCCACAAGCAGGATGATTGACTGCTCCTCAGGACGGTaGCACAAACAGAAGGAAGAT | + |
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Preference number: 2 (lower is better) Translates to: EVTRGTSLPQTATSRMIDCSSGR*HKQKED Trigger: ATCTTCCTTCTGTTTGTGGCACCGTCCTGAGGAGCA...GTCAATCATCCTGCTTGTGGCAGTCTGTGGCAGAGACGTTCCCCTTGTTACCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR GCA 90 bp | CAGCTCTGTTCTGAGTCCACCTGGATGTCCAGGATCTATTTCCCCCAAGCAGTTATGCTCCTTGGACAATaGCCACTCTGTGTGGCAAAC | + |
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Preference number: 2 (lower is better) Translates to: QLCSESTWMSRIYFPQAVMLLGQ*PLCVAN Trigger: GTTTGCCACACAGAGTGGGCATTGTCCAAGGAGCAT...AACTGCTTGGGGGAAATAGATCCTGGACATCCAGGTGGACTCAGAACAGAGCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR GCA 90 bp | CTAGCACAAAGCAATGGGAGAAACTGCTCTCCAGGCAGAGAGAGTGAGCGCAGCACCTGGGCTAAATTCTaGTCTTCCAGGGGTTTTCTA | + |
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Preference number: 2 (lower is better) Translates to: LAQSNGRNCSPGRESERSTWAKF*SSRGFL Trigger: TAGAAAACCCCTGGAAGAGCAGAATTTAGCCCAGGT...GCTGCGCTCACTCTCTCTGCCTGGAGAGCAGTTTCTCCCATTGCTTTGTGCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR GCA 90 bp | GAGGTAACAAGGGGAACGTCTCTGCCACAGACTGCCACAAGCAGGATGATTGACCCACCATGGTGCTTATaGAGAAAAGCTGAGGGAAAC | + |
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Preference number: 2 (lower is better) Translates to: EVTRGTSLPQTATSRMIDPPWCL*RKAEGN Trigger: GTTTCCCTCAGCTTTTCTGCATAAGCACCATGGTGG...GTCAATCATCCTGCTTGTGGCAGTCTGTGGCAGAGACGTTCCCCTTGTTACCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTCCGCACCTTCCCTGGAACCAGATATAGACGTGAACTGCTCATCACTCTCCTCACCTACATTCCCGTaGAAAGACTGCTGTACAAAC | + |
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Preference number: 2 (lower is better) Translates to: PSAPSLEPDIDVNCSSLSSPTFP*KDCCTN Trigger: GTTTGTACAGCAGTCTTTCCACGGGAATGTAGGTGA...GGAGAGTGATGAGCAGTTCACGTCTATATCTGGTTCCAGGGAAGGTGCGGAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CCA 90 bp | CTAGCACAAAGCAATGGGAGAAACTGCTCTCCAGGCAGAGAGAGTGAGCGCAGCCTTCCCCACTTCTATTaGGGAGTCTACATCTTTGAC | + |
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Preference number: 2 (lower is better) Translates to: LAQSNGRNCSPGRESERSLPHFY*GVYIFD Trigger: GTCAAAGATGTAGACTCCCCAATAGAAGTGGGGAAG...GCTGCGCTCACTCTCTCTGCCTGGAGAGCAGTTTCTCCCATTGCTTTGTGCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR TCA 90 bp | AACTCACAATCCTTCTGCCTCGGCCTCCCAAACGCTACAGTTACCACCGCAGCCAAGAAAGAGTCTGACTaGCTGACTGTCTTTTGTTGT | + |
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Preference number: 2 (lower is better) Translates to: NSQSFCLGLPNATVTTAAKKESD*LTVFCC Trigger: ACAACAAAAGACAGTCAGTCAGTCAGACTCTTTCTT...GGCTGCGGTGGTAACTGTAGCGTTTGGGAGGCCGAGGCAGAAGGATTGTGAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGAAAAGCTGAGGGAAACGCACGAGGAAGTCCGTGGAAAATGCTCATTTATTTGTTTGCTGTCTCTGTaGGTTGTCACCTGCTGCCCC | + |
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Preference number: 2 (lower is better) Translates to: AEKLRETHEEVRGKCSFICLLSL*VVTCCP Trigger: GGGGCAGCAGGTGACAACCCACAGAGACAGCAAACA...AATAAATGAGCATTTTCCACGGACTTCCTCGTGCGTTTCCCTCAGCTTTTCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR TCA 90 bp | CTGAAACTCACAATCCTTCTGCCTCGGCCTCCCAAACGCTACAGTTACCACCGCAAGAGTCTGACTGACTaGCTGTCTTTTGTTGTCTTA | + |
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Preference number: 2 (lower is better) Translates to: LKLTILLPRPPKRYSYHRKSLTD*LSFVVL Trigger: TAAGACAACAAAAGACAGTCAGTCAGTCAGACTCTT...GCGGTGGTAACTGTAGCGTTTGGGAGGCCGAGGCAGAAGGATTGTGAGTTTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR GCA 90 bp | CAGCTCTGTTCTGAGTCCACCTGGATGTCCAGGATCTATTTCCCCCAAGCAGTTTGCTATCCACCATGGTaGTTATGCAGAAAAGCTGAG | + |
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Preference number: 2 (lower is better) Translates to: QLCSESTWMSRIYFPQAVCYPPW*LCRKAE Trigger: CTCAGCTTTTCTGCATAAGCACCATGGTGGATAGCA...AACTGCTTGGGGGAAATAGATCCTGGACATCCAGGTGGACTCAGAACAGAGCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CCA 90 bp | TGTGTATCCCTGGATGGCCTGAAACTCACAATCCTTCTGCCTCGGCCTCCCAAATTGTCTTATGGCTGGTaGGCTATATTTCCCTTGATG | + |
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Preference number: 2 (lower is better) Translates to: CVSLDGLKLTILLPRPPKLSYGW*AIFPLM Trigger: CATCAAGGGAAATATAGCCCACCAGCCATAAGACAA...TTTGGGAGGCCGAGGCAGAAGGATTGTGAGTTTCAGGCCATCCAGGGATACACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR TCA 90 bp | TCAGAGGTAACAAGGGGAACGTCTCTGCCACAGACTGCCACAAGCAGGATGATTAAGAAAGAAAGAGTCTaGCTGACTGACTGTCTTTTG | + |
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Preference number: 2 (lower is better) Translates to: SEVTRGTSLPQTATSRMIKKERV*LTDCLL Trigger: CAAAAGACAGTCAGTCAGTCAGACTCTTTCTTTCTT...AATCATCCTGCTTGTGGCAGTCTGTGGCAGAGACGTTCCCCTTGTTACCTCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CCA 90 bp | CAGACTGCCACAAGCAGGATGATTGACACTCTGGTGGCAATGGACACACTAGGTTCTTTTGTTGTCTTATaGCTGGTGGGCTATATTTCC | + |
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Preference number: 2 (lower is better) Translates to: QTATSRMIDTLVAMDTLGSFVVL*LVGYIS Trigger: GGAAATATAGCCCACCAGCCATAAGACAACAAAAGA...ACCTAGTGTGTCCATTGCCACCAGAGTGTCAATCATCCTGCTTGTGGCAGTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGAAAAGCTGAGGGAAACGCACGAGGAAGTCCGTGGAAAATGCTCATTTATTATACATTATGCTCCTTaGACAATGCCCACTCTGTGT | + |
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Preference number: 2 (lower is better) Translates to: AEKLRETHEEVRGKCSFIIHYAP*TMPTLC Trigger: ACACAGAGTGGGCATTGTCCAAGGAGCATAATGTAT...AATAAATGAGCATTTTCCACGGACTTCCTCGTGCGTTTCCCTCAGCTTTTCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CCA 90 bp | CAGCTCTGTTCTGAGTCCACCTGGATGTCCAGGATCTATTTCCCCCAAGCAGTTCCAGCTAATGATAAATaGGAAATATCAAAGGTAGTG | + |
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Preference number: 2 (lower is better) Translates to: QLCSESTWMSRIYFPQAVPANDK*EISKVV Trigger: CACTACCTTTGATATTTCCCATTTATCATTAGCTGG...AACTGCTTGGGGGAAATAGATCCTGGACATCCAGGTGGACTCAGAACAGAGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR CAA 90 bp | ACTGACTGTCTTTTGTTGTCTTATGGCTGGTGGGCTATATTTCCCTaGATGACAGTTTCTTGTCTATGTCTCAGCCTCAATAATAGACCT | + |
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Preference number: 2 (lower is better) Translates to: TDCLLLSYGWWAIFP*MTVSCLCLSLNNRP Trigger: AGGTCTATTATTGAGGCTGAGACATAGACAAGAAACTGTCATCAAGGGAAATATAGCCCACCAGCCATAAGACAACAAAAGACAGTCAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CAA 90 bp | GGGAAGAGTGCTATCCACCATGGTGCTTATGCAGAAAAGCTGAGGGAAACGCACTGCTGTCTCTGTGGGTaGTCACCTGCTGCCCCGGTT | + |
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Preference number: 3 (lower is better) Translates to: GKSAIHHGAYAEKLRETHCCLCG*SPAAPV Trigger: AACCGGGGCAGCAGGTGACAACCCACAGAGACAGCA...GTGCGTTTCCCTCAGCTTTTCTGCATAAGCACCATGGTGGATAGCACTCTTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR TCA 72 bp | AAGCAATGGGAGAAACTGCTCTCCAGGCAGAGAGAGTaGGCGCAGCTCTGTTCTGAGTCCACCTGGATGTCC | + |
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Preference number: 3 (lower is better) Translates to: KQWEKLLSRQRE*AQLCSESTWMS Trigger: GGACATCCAGGTGGACTCAGAACAGAGCTGCGCTCACTCTCTCTGCCTGGAGAGCAGTTTCTCCCATTGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CAA 90 bp | CAGACTGCCACAAGCAGGATGATTGACACTCTGGTGGCAATGGACACACTAGGTAGTCACTGTCTCCTGTaGACGGTGGAGCTGCCTTCC | + |
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Preference number: 3 (lower is better) Translates to: QTATSRMIDTLVAMDTLGSHCLL*TVELPS Trigger: GGAAGGCAGCTCCACCGTCAACAGGAGACAGTGACT...ACCTAGTGTGTCCATTGCCACCAGAGTGTCAATCATCCTGCTTGTGGCAGTCTG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR TCA 72 bp | GAGACAGCCTATGTCTCTGTGTATCCCTGGATGGCCTaGAACTCACAATCCTTCTGCCTCGGCCTCCCAAAC | + |
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Preference number: 3 (lower is better) Translates to: ETAYVSVYPWMA*NSQSFCLGLPN Trigger: GTTTGGGAGGCCGAGGCAGAAGGATTGTGAGTTTCAGGCCATCCAGGGATACACAGAGACATAGGCTGTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CAA 90 bp | CTAGCACAAAGCAATGGGAGAAACTGCTCTCCAGGCAGAGAGAGTGAGCGCAGCCATTGTGAGGCTGAGTaGTGGTGGCACACACCTTTA | + |
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Preference number: 3 (lower is better) Translates to: LAQSNGRNCSPGRESERSHCEAE*WWHTPL Trigger: TAAAGGTGTGTGCCACCACAACTCAGCCTCACAATG...GCTGCGCTCACTCTCTCTGCCTGGAGAGCAGTTTCTCCCATTGCTTTGTGCTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR GCA 72 bp | CTCTCCAGGAACAGGGAAGAGTGCTATCCACCATGGTaGTTATGCAGAAAAGCTGAGGGAAACGCACGAGGA | + |
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Preference number: 3 (lower is better) Translates to: LSRNREECYPPW*LCRKAEGNARG Trigger: TCCTCGTGCGTTTCCCTCAGCTTTTCTGCATAAGCACCATGGTGGATAGCACTCTTCCCTGTTCCTGGAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR CCA 72 bp | CTCCTCTCCAGGAACAGGGAAGAGTGCTATCCACCATaGTGCTTATGCAGAAAAGCTGAGGGAAACGCACGA | + |
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Preference number: 3 (lower is better) Translates to: LLSRNREECYPP*CLCRKAEGNAR Trigger: TCGTGCGTTTCCCTCAGCTTTTCTGCATAAGCACCATGGTGGATAGCACTCTTCCCTGTTCCTGGAGAGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CAA 90 bp | TCAGAGGTAACAAGGGGAACGTCTCTGCCACAGACTGCCACAAGCAGGATGATTCTGACTGACTGTCTTTaGTTGTCTTATGGCTGGTGG | + |
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Preference number: 3 (lower is better) Translates to: SEVTRGTSLPQTATSRMILTDCL*LSYGWW Trigger: CCACCAGCCATAAGACAACAAAAGACAGTCAGTCAG...AATCATCCTGCTTGTGGCAGTCTGTGGCAGAGACGTTCCCCTTGTTACCTCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR TCA 72 bp | AACGTCTCTGCCACAGACTGCCACAAGCAGGATGATTaGCACTCTGGTGGCAATGGACACACTAGGTTTAAA | + |
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Preference number: 3 (lower is better) Translates to: NVSATDCHKQDD*HSGGNGHTRFK Trigger: TTTAAACCTAGTGTGTCCATTGCCACCAGAGTGTCAATCATCCTGCTTGTGGCAGTCTGTGGCAGAGACGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CAA 90 bp | GGGAAGAGTGCTATCCACCATGGTGCTTATGCAGAAAAGCTGAGGGAAACGCACTGGGCTATATTTCCCTaGATGACAGTTTCTTGTCTA | + |
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Preference number: 3 (lower is better) Translates to: GKSAIHHGAYAEKLRETHWAIFP*MTVSCL Trigger: TAGACAAGAAACTGTCATCAAGGGAAATATAGCCCA...GTGCGTTTCCCTCAGCTTTTCTGCATAAGCACCATGGTGGATAGCACTCTTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR TCA 72 bp | GCCTCTTCCCCACTTCTATTGGGGAGTCTACATCTTTaGCCTACAGATTTCACCTACATTCCCGTGGAAAGA | + |
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Preference number: 3 (lower is better) Translates to: ASSPLLLGSLHL*PTDFTYIPVER Trigger: TCTTTCCACGGGAATGTAGGTGAAATCTGTAGGTCAAAGATGTAGACTCCCCAATAGAAGTGGGGAAGAGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CAA 90 bp | GCAGAAAAGCTGAGGGAAACGCACGAGGAAGTCCGTGGAAAATGCTCATTTATTGGGGAGTCTACATCTTaGACCTACAGATTTCACCTA | + |
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Preference number: 3 (lower is better) Translates to: AEKLRETHEEVRGKCSFIGESTS*TYRFHL Trigger: TAGGTGAAATCTGTAGGTCAAAGATGTAGACTCCCC...AATAAATGAGCATTTTCCACGGACTTCCTCGTGCGTTTCCCTCAGCTTTTCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CAA 90 bp | TCAGAGGTAACAAGGGGAACGTCTCTGCCACAGACTGCCACAAGCAGGATGATTGCTTACGTATGCTCTTaGTACATTGGTTTCCTTAAA | + |
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Preference number: 3 (lower is better) Translates to: SEVTRGTSLPQTATSRMIAYVCS*YIGFLK Trigger: TTTAAGGAAACCAATGTACAAAGAGCATACGTAAGC...AATCATCCTGCTTGTGGCAGTCTGTGGCAGAGACGTTCCCCTTGTTACCTCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR GCA 72 bp | GACCTACAGATTTCACCTACATTCCCGTGGAAAGACTaGTGTACAAACATTACAGGATCTGAGATTTGGGAT | + |
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Preference number: 3 (lower is better) Translates to: DLQISPTFPWKD*CTNITGSEIWD Trigger: ATCCCAAATCTCAGATCCTGTAATGTTTGTACAGCAGTCTTTCCACGGGAATGTAGGTGAAATCTGTAGGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR-3UTR CAA 90 bp | GCAGAAAAGCTGAGGGAAACGCACGAGGAAGTCCGTGGAAAATGCTCATTTATTTATGCTCTTTGTACATaGGTTTCCTTAAAGGGTAGT | + |
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Preference number: 3 (lower is better) Translates to: AEKLRETHEEVRGKCSFIYALCT*VSLKGS Trigger: ACTACCCTTTAAGGAAACCAATGTACAAAGAGCATA...AATAAATGAGCATTTTCCACGGACTTCCTCGTGCGTTTCCCTCAGCTTTTCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR CCA 72 bp | TACATCTTTGACCTACAGATTTCACCTACATTCCCGTaGAAAGACTGCTGTACAAACATTACAGGATCTGAG | + |
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Preference number: 3 (lower is better) Translates to: YIFDLQISPTFP*KDCCTNITGSE Trigger: CTCAGATCCTGTAATGTTTGTACAGCAGTCTTTCCACGGGAATGTAGGTGAAATCTGTAGGTCAAAGATGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR TCA 72 bp | AGAGAAAGAAAGAAAGAAAGAAAGAGTCTGACTGACTaGCTGTCTTTTGTTGTCTTATGGCTGGTGGGCTAT | + |
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Preference number: 3 (lower is better) Translates to: RERKKERKSLTD*LSFVVLWLVGY Trigger: ATAGCCCACCAGCCATAAGACAACAAAAGACAGTCAGTCAGTCAGACTCTTTCTTTCTTTCTTTCTTTCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR TCA 72 bp | AGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAGTCTaGCTGACTGACTGTCTTTTGTTGTCTTATGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: REREKERKKERV*LTDCLLLSYGW Trigger: CCAGCCATAAGACAACAAAAGACAGTCAGTCAGTCAGACTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| 3UTR CAA 72 bp | GGCCTCTTCCCCACTTCTATTGGGGAGTCTACATCTTaGACCTACAGATTTCACCTACATTCCCGTGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: GLFPTSIGESTS*TYRFHLHSRGK Trigger: CTTTCCACGGGAATGTAGGTGAAATCTGTAGGTCAAAGATGTAGACTCCCCAATAGAAGTGGGGAAGAGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| CDS-3UTR TCA 90 bp | GGGAAGAGTGCTATCCACCATGGTGCTTATGCAGAAAAGCTGAGGGAAACGCACTCAAGATGCAAAGAATaGTGGCAATGGAAGGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: GKSAIHHGAYAEKLRETHSRCKE*WQWKAS Trigger: TGAAGCCTTCCATTGCCATCATTCTTTGCATCTTGA...GTGCGTTTCCCTCAGCTTTTCTGCATAAGCACCATGGTGGATAGCACTCTTCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| CDS-3UTR CCA 90 bp | CACATTGGGATGTTTAGGGATCCAGATTTTAGAAAATATCTCAACCCAGTAGTTTCCGGCCCCACTCATTaGCAAACTGGTCAGCTCTTG | + |
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Preference number: 4 (lower is better) Translates to: HIGMFRDPDFRKYLNPVVSGPTH*QTGQLL Trigger: CAAGAGCTGACCAGTTTGCCAATGAGTGGGGCCGGA...AACTACTGGGTTGAGATATTTTCTAAAATCTGGATCCCTAAACATCCCAATGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006956.9 |
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| CDS-3UTR TCA 90 bp | TGCATTTCACAAGTATTTATTCAGCACATTGGGATGTTTAGGGATCCAGATTTTTGTCCCGTGAACTTCTaGACAGCCTCTCTGGCATCG | + |
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Preference number: 4 (lower is better) Translates to: CISQVFIQHIGMFRDPDFCPVNF*TASLAS Trigger: CGATGCCAGAGAGGCTGTTCAGAAGTTCACGGGACA...AAAATCTGGATCCCTAAACATCCCAATGTGCTGAATAAATACTTGTGAAATGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006956.9 |
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| CDS-3UTR TCA 90 bp | TGCATTTCACAAGTATTTATTCAGCACATTGGGATGTTTAGGGATCCAGATTTTAAACTGGTCAGCTCTTaGGTCCTCTGCTCCATGTCC | + |
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Preference number: 4 (lower is better) Translates to: CISQVFIQHIGMFRDPDFKLVSS*VLCSMS Trigger: GGACATGGAGCAGAGGACTCAAGAGCTGACCAGTTT...AAAATCTGGATCCCTAAACATCCCAATGTGCTGAATAAATACTTGTGAAATGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006956.9 |
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| 3UTR CAA 72 bp | CTTTTGTTGTCTTATGGCTGGTGGGCTATATTTCCCTaGATGACAGTTTCTTGTCTATGTCTCAGCCTCAAT | + |
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Preference number: 4 (lower is better) Translates to: LLLSYGWWAIFP*MTVSCLCLSLN Trigger: ATTGAGGCTGAGACATAGACAAGAAACTGTCATCAAGGGAAATATAGCCCACCAGCCATAAGACAACAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| CDS-3UTR TCA 90 bp | CAGCACATTGGGATGTTTAGGGATCCAGATTTTAGAAAATATCTCAACCCAGTAATGTCTCTAGACCCTTaGCCAGCTTCTTTCATGAAC | + |
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Preference number: 4 (lower is better) Translates to: QHIGMFRDPDFRKYLNPVMSLDP*PASFMN Trigger: GTTCATGAAAGAAGCTGGTCAAGGGTCTAGAGACAT...TACTGGGTTGAGATATTTTCTAAAATCTGGATCCCTAAACATCCCAATGTGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006956.9 |
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| CDS-3UTR TCA 90 bp | TGCATTTCACAAGTATTTATTCAGCACATTGGGATGTTTAGGGATCCAGATTTTTCAAGATGCAAAGAATaGTGGCAATGGAAGGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: CISQVFIQHIGMFRDPDFSRCKE*WQWKAS Trigger: TGAAGCCTTCCATTGCCATCATTCTTTGCATCTTGA...AAAATCTGGATCCCTAAACATCCCAATGTGCTGAATAAATACTTGTGAAATGCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006956.9 |
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| CDS-3UTR CAA 90 bp | GCAGAAAAGCTGAGGGAAACGCACGAGGAAGTCCGTGGAAAATGCTCATTTATTCTCCAGCCCCCATCCTaGAAGCCTACCTTGACCAGC | + |
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Preference number: 5 (lower is better) Translates to: AEKLRETHEEVRGKCSFILQPPS*KPTLTS Trigger: GCTGGTCAAGGTAGGCTTCAAGGATGGGGGCTGGAG...AATAAATGAGCATTTTCCACGGACTTCCTCGTGCGTTTCCCTCAGCTTTTCTGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| CDS-3UTR CAA 90 bp | TGTGTATCCCTGGATGGCCTGAAACTCACAATCCTTCTGCCTCGGCCTCCCAAACAAGCATGTTTGCCCTaGATTATGTGGTCCCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: CVSLDGLKLTILLPRPPKQACLP*IMWSLL Trigger: GAGCAGGGACCACATAATCAAGGGCAAACATGCTTG...TTTGGGAGGCCGAGGCAGAAGGATTGTGAGTTTCAGGCCATCCAGGGATACACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| CDS-3UTR CAA 90 bp | CAGCACATTGGGATGTTTAGGGATCCAGATTTTAGAAAATATCTCAACCCAGTAAAGTGGTTGGGGTCTTaGCCACTCCGGCCCCACTCA | + |
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Preference number: 5 (lower is better) Translates to: QHIGMFRDPDFRKYLNPVKWLGS*PLRPHS Trigger: TGAGTGGGGCCGGAGTGGCAAAGACCCCAACCACTT...TACTGGGTTGAGATATTTTCTAAAATCTGGATCCCTAAACATCCCAATGTGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000006956.9 |
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| CDS-3UTR CAA 90 bp | CACATTGGGATGTTTAGGGATCCAGATTTTAGAAAATATCTCAACCCAGTAGTTCAAACTGGTCAGCTCTaGAGTCCTCTGCTCCATGTC | + |
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Preference number: 5 (lower is better) Translates to: HIGMFRDPDFRKYLNPVVQTGQL*SPLLHV Trigger: GACATGGAGCAGAGGACTCAAGAGCTGACCAGTTTG...AACTACTGGGTTGAGATATTTTCTAAAATCTGGATCCCTAAACATCCCAATGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006956.9 |
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| CDS-3UTR CAA 90 bp | CAGCACATTGGGATGTTTAGGGATCCAGATTTTAGAAAATATCTCAACCCAGTACGAGCATGGAAGTATTaGTCTGAGTTTTTCCAGTTA | + |
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Preference number: 5 (lower is better) Translates to: QHIGMFRDPDFRKYLNPVRAWKY*SEFFQL Trigger: TAACTGGAAAAACTCAGACAAATACTTCCATGCTCG...TACTGGGTTGAGATATTTTCTAAAATCTGGATCCCTAAACATCCCAATGTGCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000006956.9 |
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| CDS TCA 72 bp | ACTCCGGCCCCACTCATTGGCAAACTGGTCAGCTCTTaGGTCCTCTGCTCCATGTCCCGTGAACTTCTGAAC | + |
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Preference number: 6 (lower is better) Translates to: TPAPLIGKLVSS*VLCSMSRELLN Trigger: GTTCAGAAGTTCACGGGACATGGAGCAGAGGACTCAAGAGCTGACCAGTTTGCCAATGAGTGGGGCCGGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006956.9 |
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| CDS TCA 72 bp | CCCATCCTTGAAGCCTACCTTGACCAGCTTCTTTCATaGACTGGACCCATCTTTGGCTGTCAACTCCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: PILEAYLDQLLS*TGPIFGCQLPG Trigger: TCCTGGGAGTTGACAGCCAAAGATGGGTCCAGTTCATGAAAGAAGCTGGTCAAGGTAGGCTTCAAGGATGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| CDS CAA 90 bp | GTCTCTAGACCCTTGACCAGCTTCTTTCATGAACTGGACCCATCTTaGGCTGTCAACTCCCAGGATCAAGATGCAAAGAATGATGGCAAT | + |
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Preference number: 6 (lower is better) Translates to: VSRPLTSFFHELDPS*AVNSQDQDAKNDGN Trigger: ATTGCCATCATTCTTTGCATCTTGATCCTGGGAGTTGACAGCCAAAGATGGGTCCAGTTCATGAAAGAAGCTGGTCAAGGGTCTAGAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006956.9 |
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| CDS CAA 72 bp | CCCTTGACCAGCTTCTTTCATGAACTGGACCCATCTTaGGCTGTCAACTCCCAGGATCAAGATGCAAAGAAT | + |
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Preference number: 6 (lower is better) Translates to: PLTSFFHELDPS*AVNSQDQDAKN Trigger: ATTCTTTGCATCTTGATCCTGGGAGTTGACAGCCAAAGATGGGTCCAGTTCATGAAAGAAGCTGGTCAAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006956.9 |
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| CDS CAA 90 bp | TTGAAGCCTACCTTGACCAGCTTCTTTCATGAACTGGACCCATCTTaGGCTGTCAACTCCCAGGATCAAGATGCAAAGAATGATGGCAAT | + |
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Preference number: 6 (lower is better) Translates to: LKPTLTSFFHELDPS*AVNSQDQDAKNDGN Trigger: ATTGCCATCATTCTTTGCATCTTGATCCTGGGAGTTGACAGCCAAAGATGGGTCCAGTTCATGAAAGAAGCTGGTCAAGGTAGGCTTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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| CDS CAA 72 bp | ACCTTGACCAGCTTCTTTCATGAACTGGACCCATCTTaGGCTGTCAACTCCCAGGATCAAGATGCAAAGAAT | + |
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Preference number: 6 (lower is better) Translates to: TLTSFFHELDPS*AVNSQDQDAKN Trigger: ATTCTTTGCATCTTGATCCTGGGAGTTGACAGCCAAAGATGGGTCCAGTTCATGAAAGAAGCTGGTCAAGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210913.2 |
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