Pregenerated sensors for SAA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057465Ensembl transcript IDs: ENSMUST00000075982.4, ENSMUST00000210272.2, ENSMUST00000210769.2
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCAAGCAGTTACTACTGCTCGAGTAACTCCATTCTGAAACCCTTGTaGGATACACACATGAGAGGTATACTATGTTGCCCCAGAGAGCAT | + |
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Preference number: 1 (lower is better) Translates to: SSSYYCSSNSILKPL*DTHMRGILCCPREH Trigger: ATGCTCTCTGGGGCAACATAGTATACCTCTCATGTGTGTATCCCACAAGGGTTTCAGAATGGAGTTACTCGAGCAGTAGTAACTGCTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| 3UTR CAA 90 bp | TCCTCAAGCAGTTACTACTGCTCGAGTAACTCCATTCTGAAACCCTaGTGGGATACACACATGAGAGGTATACTATGTTGCCCCAGAGAG | + |
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Preference number: 2 (lower is better) Translates to: SSSSYYCSSNSILKP*WDTHMRGILCCPRE Trigger: CTCTCTGGGGCAACATAGTATACCTCTCATGTGTGTATCCCACAAGGGTTTCAGAATGGAGTTACTCGAGCAGTAGTAACTGCTTGAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| 3UTR-3UTR GCA 90 bp | CTCTCCTCCTCAAGCAGTTACTACTGCTCGAGTAACTCCATTCTGAAACCCTTGAGAGGTATACTATGTTaGCCCAGAGAGCATCTTCAG | + |
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Preference number: 2 (lower is better) Translates to: LSSSSSYYCSSNSILKPLRGILC*PREHLQ Trigger: CTGAAGATGCTCTCTGGGGCAACATAGTATACCTCT...CAAGGGTTTCAGAATGGAGTTACTCGAGCAGTAGTAACTGCTTGAGGAGGAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| 3UTR CCA 72 bp | TACTACTGCTCGAGTAACTCCATTCTGAAACCCTTGTaGGATACACACATGAGAGGTATACTATGTTGCCCC | + |
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Preference number: 3 (lower is better) Translates to: YYCSSNSILKPL*DTHMRGILCCP Trigger: GGGGCAACATAGTATACCTCTCATGTGTGTATCCCACAAGGGTTTCAGAATGGAGTTACTCGAGCAGTAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| CDS-3UTR CCA 90 bp | CTCTCCTCCTCAAGCAGTTACTACTGCTCGAGTAACTCCATTCTGAAACCCTTGTGTCTGTTGGCTTCCTaGTCAGCCATGGTGTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: LSSSSSYYCSSNSILKPLCLLAS*SAMVSS Trigger: CGAGGACACCATGGCTGACCAGGAAGCCAACAGACA...CAAGGGTTTCAGAATGGAGTTACTCGAGCAGTAGTAACTGCTTGAGGAGGAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| CDS-3UTR CCA 90 bp | TACTACTGCTCGAGTAACTCCATTCTGAAACCCTTGTGGGATACACACATGAGATGCGGCCATGTCTGTTaGCTTCCTGGTCAGCCATGG | + |
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Preference number: 4 (lower is better) Translates to: YYCSSNSILKPLWDTHMRCGHVC*LPGQPW Trigger: CCATGGCTGACCAGGAAGCCAACAGACATGGCCGCA...TCTCATGTGTGTATCCCACAAGGGTTTCAGAATGGAGTTACTCGAGCAGTAGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| CDS-3UTR CCA 90 bp | TACTACTGCTCGAGTAACTCCATTCTGAAACCCTTGTGGGATACACACATGAGATGTCTGTTGGCTTCCTaGTCAGCCATGGTGTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: YYCSSNSILKPLWDTHMRCLLAS*SAMVSS Trigger: CGAGGACACCATGGCTGACCAGGAAGCCAACAGACA...TCTCATGTGTGTATCCCACAAGGGTTTCAGAATGGAGTTACTCGAGCAGTAGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| 3UTR CAA 72 bp | ACCCTTGTGGGATACACACATGAGAGGTATACTATGTaGCCCCAGAGAGCATCTTCAGTGTTCCTAGATAGG | + |
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Preference number: 4 (lower is better) Translates to: TLVGYTHERYTM*PQRASSVFLDR Trigger: CCTATCTAGGAACACTGAAGATGCTCTCTGGGGCAACATAGTATACCTCTCATGTGTGTATCCCACAAGGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| CDS-3UTR TCA 90 bp | TACTACTGCTCGAGTAACTCCATTCTGAAACCCTTGTGGGATACACACATGAGATCTCTCTTGCATCACTaGTTTTCTCAGCAGCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: YYCSSNSILKPLWDTHMRSLLHH*FSQQPR Trigger: TCTGGGCTGCTGAGAAAATCAGTGATGCAAGAGAGA...TCTCATGTGTGTATCCCACAAGGGTTTCAGAATGGAGTTACTCGAGCAGTAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| CDS-3UTR TCA 90 bp | ATTACCCTCTCCTCCTCAAGCAGTTACTACTGCTCGAGTAACTCCATTCTGAAATCTCTCTTGCATCACTaGTTTTCTCAGCAGCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: ITLSSSSSYYCSSNSILKSLLHH*FSQQPR Trigger: TCTGGGCTGCTGAGAAAATCAGTGATGCAAGAGAGA...TTTCAGAATGGAGTTACTCGAGCAGTAGTAACTGCTTGAGGAGGAGAGGGTAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| CDS-3UTR CCA 90 bp | TACTACTGCTCGAGTAACTCCATTCTGAAACCCTTGTGGGATACACACATGAGAATGTCTCCAGCCCCTTaGAAAGCCTCCCCAATAAAT | + |
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Preference number: 4 (lower is better) Translates to: YYCSSNSILKPLWDTHMRMSPAP*KASPIN Trigger: ATTTATTGGGGAGGCTTTCCAAGGGGCTGGAGACAT...TCTCATGTGTGTATCCCACAAGGGTTTCAGAATGGAGTTACTCGAGCAGTAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075982.4 ENSMUST00000210769.2 |
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| 3UTR CAA 72 bp | AGTTACTACTGCTCGAGTAACTCCATTCTGAAACCCTaGTGGGATACACACATGAGAGGTATACTATGTTGC | + |
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Preference number: 4 (lower is better) Translates to: SYYCSSNSILKP*WDTHMRGILCC Trigger: GCAACATAGTATACCTCTCATGTGTGTATCCCACAAGGGTTTCAGAATGGAGTTACTCGAGCAGTAGTAACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| CDS TCA 90 bp | TCCTGGTCAGCCATGGTGTCCTCGTGTCCTCTGCCGAAGAATTCCTaGAAGCTCTCTCTTGCATCACTGATTTTCTCAGCAGCCCAGACT | + |
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Preference number: 5 (lower is better) Translates to: SWSAMVSSCPLPKNS*KLSLASLIFSAAQT Trigger: AGTCTGGGCTGCTGAGAAAATCAGTGATGCAAGAGAGAGCTTTCAGGAATTCTTCGGCAGAGGACACGAGGACACCATGGCTGACCAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| CDS-3UTR CAA 90 bp | ATTACCCTCTCCTCCTCAAGCAGTTACTACTGCTCGAGTAACTCCATTCTGAAACATGTCTCCAGCCCCTaGGAAAGCCTCCCCAATAAA | + |
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Preference number: 5 (lower is better) Translates to: ITLSSSSSYYCSSNSILKHVSSP*ESLPNK Trigger: TTTATTGGGGAGGCTTTCCAAGGGGCTGGAGACATG...TTTCAGAATGGAGTTACTCGAGCAGTAGTAACTGCTTGAGGAGGAGAGGGTAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075982.4 ENSMUST00000210769.2 |
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| CDS-3UTR CAA 90 bp | TACTACTGCTCGAGTAACTCCATTCTGAAACCCTTGTGGGATACACACATGAGACATGTCTCCAGCCCCTaGGAAAGCCTCCCCAATAAA | + |
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Preference number: 5 (lower is better) Translates to: YYCSSNSILKPLWDTHMRHVSSP*ESLPNK Trigger: TTTATTGGGGAGGCTTTCCAAGGGGCTGGAGACATG...TCTCATGTGTGTATCCCACAAGGGTTTCAGAATGGAGTTACTCGAGCAGTAGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075982.4 ENSMUST00000210769.2 |
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| CDS-3UTR CAA 90 bp | TACTACTGCTCGAGTAACTCCATTCTGAAACCCTTGTGGGATACACACATGAGACGAGCATGGAAGTATTaGTCTCCATCTTTCCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: YYCSSNSILKPLWDTHMRRAWKY*SPSFQP Trigger: TGGCTGGAAAGATGGAGACAAATACTTCCATGCTCG...TCTCATGTGTGTATCCCACAAGGGTTTCAGAATGGAGTTACTCGAGCAGTAGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| CDS-3UTR CAA 90 bp | ATTACCCTCTCCTCCTCAAGCAGTTACTACTGCTCGAGTAACTCCATTCTGAAACGAGCATGGAAGTATTaGTCTCCATCTTTCCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: ITLSSSSSYYCSSNSILKRAWKY*SPSFQP Trigger: TGGCTGGAAAGATGGAGACAAATACTTCCATGCTCG...TTTCAGAATGGAGTTACTCGAGCAGTAGTAACTGCTTGAGGAGGAGAGGGTAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| CDS CCA 72 bp | GGGTCTTTGCCACTGCGGCCATGTCTGTTGGCTTCCTaGTCAGCCATGGTGTCCTCGTGTCCTCTGCCGAAG | + |
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Preference number: 6 (lower is better) Translates to: GSLPLRPCLLAS*SAMVSSCPLPK Trigger: CTTCGGCAGAGGACACGAGGACACCATGGCTGACCAGGAAGCCAACAGACATGGCCGCAGTGGCAAAGACCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| CDS CCA 72 bp | CACTGCGGCCATGTCTGTTGGCTTCCTGGTCAGCCATaGTGTCCTCGTGTCCTCTGCCGAAGAATTCCTGAA | + |
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Preference number: 6 (lower is better) Translates to: HCGHVCWLPGQP*CPRVLCRRIPE Trigger: TTCAGGAATTCTTCGGCAGAGGACACGAGGACACCATGGCTGACCAGGAAGCCAACAGACATGGCCGCAGTG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| CDS TCA 72 bp | TGCCGAAGAATTCCTGAAAGCTCTCTCTTGCATCACTaGTTTTCTCAGCAGCCCAGACTCCCCCGGGACCCC | + |
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Preference number: 6 (lower is better) Translates to: CRRIPESSLLHH*FSQQPRLPRDP Trigger: GGGGTCCCGGGGGAGTCTGGGCTGCTGAGAAAATCAGTGATGCAAGAGAGAGCTTTCAGGAATTCTTCGGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| CDS GCA 72 bp | TGGCTTCCTGGTCAGCCATGGTGTCCTCGTGTCCTCTaGCGAAGAATTCCTGAAAGCTCTCTCTTGCATCAC | + |
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Preference number: 6 (lower is better) Translates to: WLPGQPWCPRVL*RRIPESSLLHH Trigger: GTGATGCAAGAGAGAGCTTTCAGGAATTCTTCGGCAGAGGACACGAGGACACCATGGCTGACCAGGAAGCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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| CDS GCA 72 bp | GTGTCCTCTGCCGAAGAATTCCTGAAAGCTCTCTCTTaGATCACTGATTTTCTCAGCAGCCCAGACTCCCCC | + |
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Preference number: 6 (lower is better) Translates to: VSSAEEFLKALS*ITDFLSSPDSP Trigger: GGGGGAGTCTGGGCTGCTGAGAAAATCAGTGATGCAAGAGAGAGCTTTCAGGAATTCTTCGGCAGAGGACAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075982.4 ENSMUST00000210272.2 ENSMUST00000210769.2 |
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