Pregenerated sensors for SAA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074115Ensembl transcript IDs: ENSMUST00000128088.4
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 72 bp | TACTACTGCAAGAGTAACTCAGTTCTGAAACCCTTGTaGGATACACACATGAGAGATATACAATGTTTCCCC | + |
Preference number: 3 (lower is better) Translates to: YYCKSNSVLKPL*DTHMRDIQCFP Trigger: GGGGAAACATTGTATATCTCTCATGTGTGTATCCCACAAGGGTTTCAGAACTGAGTTACTCTTGCAGTAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128088.4 |
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CDS-3UTR CCA 90 bp | CACTTCCAAGTTTCTGTTTATTACCCTCTCCTCCTCAAGCAGTTACTACTGCAATGCGGCCATGTCTGTTaGCTTCCTGGTCAGCAATGG | + |
Preference number: 4 (lower is better) Translates to: HFQVSVYYPLLLKQLLLQCGHVC*LPGQQW Trigger: CCATTGCTGACCAGGAAGCCAACAGACATGGCCGCA...TTGCAGTAGTAACTGCTTGAGGAGGAGAGGGTAATAAACAGAAACTTGGAAGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128088.4 |
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CDS-3UTR TCA 90 bp | CTCAGTTCTGAAACCCTTGTGGGATACACACATGAGAGATATACAATGTTTCCCCCTCTCTTCCATCACTaGTTTTCTCAGCAGCCCAGA | + |
Preference number: 4 (lower is better) Translates to: LSSETLVGYTHERYTMFPPLFHH*FSQQPR Trigger: TCTGGGCTGCTGAGAAAATCAGTGATGGAAGAGAGG...GGGAAACATTGTATATCTCTCATGTGTGTATCCCACAAGGGTTTCAGAACTGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128088.4 |
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CDS-3UTR TCA 90 bp | TGGGATACACACATGAGAGATATACAATGTTTCCCCAGAGAGCATCTTCAGTGTCTGCCGAAGAATTCCTaGAAGGCCTCTCTTCCATCA | + |
Preference number: 4 (lower is better) Translates to: WDTHMRDIQCFPREHLQCLPKNS*KASLPS Trigger: TGATGGAAGAGAGGCCTTTCAGGAATTCTTCGGCAG...ACACTGAAGATGCTCTCTGGGGAAACATTGTATATCTCTCATGTGTGTATCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128088.4 |
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CDS-3UTR TCA 90 bp | AAACCCTTGTGGGATACACACATGAGAGATATACAATGTTTCCCCAGAGAGCATATGGAAGTATTTGTCTaGGTTTTTCCAGTTAGCTTC | + |
Preference number: 4 (lower is better) Translates to: KPLWDTHMRDIQCFPREHMEVFV*VFPVSF Trigger: GAAGCTAACTGGAAAAACTCAGACAAATACTTCCAT...ATGCTCTCTGGGGAAACATTGTATATCTCTCATGTGTGTATCCCACAAGGGTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128088.4 |
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CDS-3UTR CAA 90 bp | GTTCTGAAACCCTTGTGGGATACACACATGAGAGATATACAATGTTTCCCCAGACATGTCCCCAGCCCCTaGGAAAGCCTCGTGAACAAA | + |
Preference number: 5 (lower is better) Translates to: VLKPLWDTHMRDIQCFPRHVPSP*ESLVNK Trigger: TTTGTTCACGAGGCTTTCCAAGGGGCTGGGGACATG...TCTGGGGAAACATTGTATATCTCTCATGTGTGTATCCCACAAGGGTTTCAGAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000128088.4 |
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CDS CCA 72 bp | GGGTCTTTGCCACTGCGGCCATGTCTGTTGGCTTCCTaGTCAGCAATGGTGTCCTCATGTCCTCTGCCGAAG | + |
Preference number: 6 (lower is better) Translates to: GSLPLRPCLLAS*SAMVSSCPLPK Trigger: CTTCGGCAGAGGACATGAGGACACCATTGCTGACCAGGAAGCCAACAGACATGGCCGCAGTGGCAAAGACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128088.4 |
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CDS GCA 72 bp | TGGCTTCCTGGTCAGCAATGGTGTCCTCATGTCCTCTaGCGAAGAATTCCTGAAAGGCCTCTCTTCCATCAC | + |
Preference number: 6 (lower is better) Translates to: WLPGQQWCPHVL*RRIPERPLFHH Trigger: GTGATGGAAGAGAGGCCTTTCAGGAATTCTTCGGCAGAGGACATGAGGACACCATTGCTGACCAGGAAGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128088.4 |
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CDS TCA 72 bp | GCAATGGTGTCCTCATGTCCTCTGCCGAAGAATTCCTaGAAGGCCTCTCTTCCATCACTGATTTTCTCAGCA | + |
Preference number: 6 (lower is better) Translates to: AMVSSCPLPKNS*KASLPSLIFSA Trigger: TGCTGAGAAAATCAGTGATGGAAGAGAGGCCTTTCAGGAATTCTTCGGCAGAGGACATGAGGACACCATTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128088.4 |