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Pregenerated sensors for SAA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074115

Ensembl transcript IDs: ENSMUST00000128088.4

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 72 bp TACTACTGCAAGAGTAACTCAGTTCTGAAACCCTTGTaGGATACACACATGAGAGATATACAATGTTTCCCC +
Preference number: 3 (lower is better)
Translates to: YYCKSNSVLKPL*DTHMRDIQCFP
Trigger: GGGGAAACATTGTATATCTCTCATGTGTGTATCCCACAAGGGTTTCAGAACTGAGTTACTCTTGCAGTAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128088.4
CDS-3UTR CCA 90 bp CACTTCCAAGTTTCTGTTTATTACCCTCTCCTCCTCAAGCAGTTACTACTGCAATGCGGCCATGTCTGTTaGCTTCCTGGTCAGCAATGG +
Preference number: 4 (lower is better)
Translates to: HFQVSVYYPLLLKQLLLQCGHVC*LPGQQW
Trigger: CCATTGCTGACCAGGAAGCCAACAGACATGGCCGCA...TTGCAGTAGTAACTGCTTGAGGAGGAGAGGGTAATAAACAGAAACTTGGAAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128088.4
CDS-3UTR TCA 90 bp CTCAGTTCTGAAACCCTTGTGGGATACACACATGAGAGATATACAATGTTTCCCCCTCTCTTCCATCACTaGTTTTCTCAGCAGCCCAGA +
Preference number: 4 (lower is better)
Translates to: LSSETLVGYTHERYTMFPPLFHH*FSQQPR
Trigger: TCTGGGCTGCTGAGAAAATCAGTGATGGAAGAGAGG...GGGAAACATTGTATATCTCTCATGTGTGTATCCCACAAGGGTTTCAGAACTGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128088.4
CDS-3UTR TCA 90 bp TGGGATACACACATGAGAGATATACAATGTTTCCCCAGAGAGCATCTTCAGTGTCTGCCGAAGAATTCCTaGAAGGCCTCTCTTCCATCA +
Preference number: 4 (lower is better)
Translates to: WDTHMRDIQCFPREHLQCLPKNS*KASLPS
Trigger: TGATGGAAGAGAGGCCTTTCAGGAATTCTTCGGCAG...ACACTGAAGATGCTCTCTGGGGAAACATTGTATATCTCTCATGTGTGTATCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128088.4
CDS-3UTR TCA 90 bp AAACCCTTGTGGGATACACACATGAGAGATATACAATGTTTCCCCAGAGAGCATATGGAAGTATTTGTCTaGGTTTTTCCAGTTAGCTTC +
Preference number: 4 (lower is better)
Translates to: KPLWDTHMRDIQCFPREHMEVFV*VFPVSF
Trigger: GAAGCTAACTGGAAAAACTCAGACAAATACTTCCAT...ATGCTCTCTGGGGAAACATTGTATATCTCTCATGTGTGTATCCCACAAGGGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128088.4
CDS-3UTR CAA 90 bp GTTCTGAAACCCTTGTGGGATACACACATGAGAGATATACAATGTTTCCCCAGACATGTCCCCAGCCCCTaGGAAAGCCTCGTGAACAAA +
Preference number: 5 (lower is better)
Translates to: VLKPLWDTHMRDIQCFPRHVPSP*ESLVNK
Trigger: TTTGTTCACGAGGCTTTCCAAGGGGCTGGGGACATG...TCTGGGGAAACATTGTATATCTCTCATGTGTGTATCCCACAAGGGTTTCAGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000128088.4
CDS CCA 72 bp GGGTCTTTGCCACTGCGGCCATGTCTGTTGGCTTCCTaGTCAGCAATGGTGTCCTCATGTCCTCTGCCGAAG +
Preference number: 6 (lower is better)
Translates to: GSLPLRPCLLAS*SAMVSSCPLPK
Trigger: CTTCGGCAGAGGACATGAGGACACCATTGCTGACCAGGAAGCCAACAGACATGGCCGCAGTGGCAAAGACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128088.4
CDS GCA 72 bp TGGCTTCCTGGTCAGCAATGGTGTCCTCATGTCCTCTaGCGAAGAATTCCTGAAAGGCCTCTCTTCCATCAC +
Preference number: 6 (lower is better)
Translates to: WLPGQQWCPHVL*RRIPERPLFHH
Trigger: GTGATGGAAGAGAGGCCTTTCAGGAATTCTTCGGCAGAGGACATGAGGACACCATTGCTGACCAGGAAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128088.4
CDS TCA 72 bp GCAATGGTGTCCTCATGTCCTCTGCCGAAGAATTCCTaGAAGGCCTCTCTTCCATCACTGATTTTCTCAGCA +
Preference number: 6 (lower is better)
Translates to: AMVSSCPLPKNS*KASLPSLIFSA
Trigger: TGCTGAGAAAATCAGTGATGGAAGAGAGGCCTTTCAGGAATTCTTCGGCAGAGGACATGAGGACACCATTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128088.4