Pregenerated sensors for S1PR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045092Ensembl transcript IDs: ENSMUST00000055676.4
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCAGTGGAGAGCGAGAGACATTTTTGAAATGCTGGGGTAGTGGGTaGTCAAGTCAGAATGCTTCCCTCAGTATCAACAGCTTCTTCAGG | + |
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Preference number: 1 (lower is better) Translates to: SSGERETFLKCWGSG*SSQNASLSINSFFR Trigger: CCTGAAGAAGCTGTTGATACTGAGGGAAGCATTCTGACTTGATCACCCACTACCCCAGCATTTCAAAAATGTCTCTCGCTCTCCACTGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR CCA 90 bp | GCCTACCAAATTCCCAACAACTTGACCCAGTTTACATGGAAACTTTaGCCTCAGCAAATAGCCTTCCCAGCAAATAGCTTGCTCACTATA | + |
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Preference number: 1 (lower is better) Translates to: AYQIPNNLTQFTWKL*PQQIAFPANSLLTI Trigger: TATAGTGAGCAAGCTATTTGCTGGGAAGGCTATTTGCTGAGGCCAAAGTTTCCATGTAAACTGGGTCAAGTTGTTGGGAATTTGGTAGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR CCA 90 bp | TTAAAGATGGCCTACCAAATTCCCAACAACTTGACCCAGTTTACATaGAAACTTTGGCCTCAGCAAATAGCCTTCCCAGCAAATAGCTTG | + |
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Preference number: 1 (lower is better) Translates to: LKMAYQIPNNLTQFT*KLWPQQIAFPANSL Trigger: CAAGCTATTTGCTGGGAAGGCTATTTGCTGAGGCCAAAGTTTCCATGTAAACTGGGTCAAGTTGTTGGGAATTTGGTAGGCCATCTTTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR-3UTR TCA 90 bp | GAGGAGGGACCAGATGAGCCCTCTGGGAGCTTGACAATGCTAGACCTTTGGCTCACTGCAGGCCAGACCTaGTCTCCACCCTTCCCAGTG | + |
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Preference number: 2 (lower is better) Translates to: EEGPDEPSGSLTMLDLWLTAGQT*SPPFPV Trigger: CACTGGGAAGGGTGGAGATCAGGTCTGGCCTGCAGT...GAGCCAAAGGTCTAGCATTGTCAAGCTCCCAGAGGGCTCATCTGGTCCCTCCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR CAA 90 bp | GAAACCCACTGCAGGCCAGACCTGATCTCCACCCTTCCCAGTGCATaGTTCACAATTACTACCTACCTACATCATGGTATCACCAGGCCG | + |
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Preference number: 2 (lower is better) Translates to: ETHCRPDLISTLPSA*FTITTYLHHGITRP Trigger: CGGCCTGGTGATACCATGATGTAGGTAGGTAGTAATTGTGAACAATGCACTGGGAAGGGTGGAGATCAGGTCTGGCCTGCAGTGGGTTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR-3UTR GCA 90 bp | AATTCCCAACAACTTGACCCAGTTTACATGGAAACTTTGGCCTCAGCAAATAGCCAGTTGCTCCTTCCTTaGAGCAGTGGAGAGCGAGAG | + |
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Preference number: 2 (lower is better) Translates to: NSQQLDPVYMETLASANSQLLLP*SSGERE Trigger: CTCTCGCTCTCCACTGCTGCAAGGAAGGAGCAACTG...GCTATTTGCTGAGGCCAAAGTTTCCATGTAAACTGGGTCAAGTTGTTGGGAATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR-3UTR TCA 90 bp | TCATCAATACCTAGTGACAGCCGAAATAAAGAATTCCTGATGTTCCCTGTCAGTAGCGAGAGACATTTTTaGAATGCTGGGGTAGTGGGT | + |
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Preference number: 2 (lower is better) Translates to: SSIPSDSRNKEFLMFPVSSERHF*NAGVVG Trigger: ACCCACTACCCCAGCATTTCAAAAATGTCTCTCGCT...ACTGACAGGGAACATCAGGAATTCTTTATTTCGGCTGTCACTAGGTATTGATGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR-3UTR GCA 90 bp | CCATCATCAATACCTAGTGACAGCCGAAATAAAGAATTCCTGATGTTCCCTGTCCTCCACCCTTCCCAGTaGATTGTTCACAATTACTAC | + |
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Preference number: 2 (lower is better) Translates to: PSSIPSDSRNKEFLMFPVLHPSQ*IVHNYY Trigger: GTAGTAATTGTGAACAATGCACTGGGAAGGGTGGAG...GACAGGGAACATCAGGAATTCTTTATTTCGGCTGTCACTAGGTATTGATGATGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR-3UTR CCA 90 bp | AAAAGTGCCAAAGGTGCTGTAGGGGTTAGAGAAAGACAGCAAGAAACAGCTCTTTTTACATGGAAACTTTaGCCTCAGCAAATAGCCTTC | + |
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Preference number: 2 (lower is better) Translates to: KSAKGAVGVRERQQETALFTWKL*PQQIAF Trigger: GAAGGCTATTTGCTGAGGCCAAAGTTTCCATGTAAA...AAGAGCTGTTTCTTGCTGTCTTTCTCTAACCCCTACAGCACCTTTGGCACTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR-3UTR CCA 90 bp | CCATCATCAATACCTAGTGACAGCCGAAATAAAGAATTCCTGATGTTCCCTGTCTTGACCCAGTTTACATaGAAACTTTGGCCTCAGCAA | + |
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Preference number: 2 (lower is better) Translates to: PSSIPSDSRNKEFLMFPVLTQFT*KLWPQQ Trigger: TTGCTGAGGCCAAAGTTTCCATGTAAACTGGGTCAA...GACAGGGAACATCAGGAATTCTTTATTTCGGCTGTCACTAGGTATTGATGATGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR-3UTR GCA 90 bp | TCATCAATACCTAGTGACAGCCGAAATAAAGAATTCCTGATGTTCCCTGTCAGTGTGATCAAGTCAGAATaGTTCCCTCAGTATCAACAG | + |
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Preference number: 2 (lower is better) Translates to: SSIPSDSRNKEFLMFPVSVIKSE*FPQYQQ Trigger: CTGTTGATACTGAGGGAAGCATTCTGACTTGATCAC...ACTGACAGGGAACATCAGGAATTCTTTATTTCGGCTGTCACTAGGTATTGATGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR-3UTR TCA 90 bp | AATTCCCAACAACTTGACCCAGTTTACATGGAAACTTTGGCCTCAGCAAATAGCACTTTGACATTACAGTaGGAGATCACAACACTTTCT | + |
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Preference number: 2 (lower is better) Translates to: NSQQLDPVYMETLASANSTLTLQ*EITTLS Trigger: AGAAAGTGTTGTGATCTCTCACTGTAATGTCAAAGT...GCTATTTGCTGAGGCCAAAGTTTCCATGTAAACTGGGTCAAGTTGTTGGGAATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR-3UTR TCA 90 bp | TCTGAAATCATCAATAAAAGTGCCAAAGGTGCTGTAGGGGTTAGAGAAAGACAGAAATTCCCAACAACTTaGCCCAGTTTACATGGAAAC | + |
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Preference number: 2 (lower is better) Translates to: SEIINKSAKGAVGVRERQKFPTT*PSLHGN Trigger: GTTTCCATGTAAACTGGGTCAAGTTGTTGGGAATTT...CTGTCTTTCTCTAACCCCTACAGCACCTTTGGCACTTTTATTGATGATTTCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR GCA 72 bp | CCACTGCAGGCCAGACCTGATCTCCACCCTTCCCAGTaGATTGTTCACAATTACTACCTACCTACATCATGG | + |
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Preference number: 3 (lower is better) Translates to: PLQARPDLHPSQ*IVHNYYLPTSW Trigger: CCATGATGTAGGTAGGTAGTAATTGTGAACAATGCACTGGGAAGGGTGGAGATCAGGTCTGGCCTGCAGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR-3UTR CAA 90 bp | CCATCATCAATACCTAGTGACAGCCGAAATAAAGAATTCCTGATGTTCCCTGTCCCAGTTGCTCCTTCCTaGCAGCAGTGGAGAGCGAGA | + |
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Preference number: 3 (lower is better) Translates to: PSSIPSDSRNKEFLMFPVPVAPS*QQWRAR Trigger: TCTCGCTCTCCACTGCTGCAAGGAAGGAGCAACTGG...GACAGGGAACATCAGGAATTCTTTATTTCGGCTGTCACTAGGTATTGATGATGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR TCA 72 bp | TCCTTCCTTGCAGCAGTGGAGAGCGAGAGACATTTTTaGAATGCTGGGGTAGTGGGTGATCAAGTCAGAATG | + |
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Preference number: 3 (lower is better) Translates to: SFLAAVESERHF*NAGVVGDQVRM Trigger: CATTCTGACTTGATCACCCACTACCCCAGCATTTCAAAAATGTCTCTCGCTCTCCACTGCTGCAAGGAAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR-3UTR CAA 90 bp | CCATCATCAATACCTAGTGACAGCCGAAATAAAGAATTCCTGATGTTCCCTGTCGAGCCCTCTGGGAGCTaGACAATGCTAGACCTTTGG | + |
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Preference number: 3 (lower is better) Translates to: PSSIPSDSRNKEFLMFPVEPSGS*TMLDLW Trigger: CCAAAGGTCTAGCATTGTCAAGCTCCCAGAGGGCTC...GACAGGGAACATCAGGAATTCTTTATTTCGGCTGTCACTAGGTATTGATGATGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR TCA 72 bp | GAGCGAGAGACATTTTTGAAATGCTGGGGTAGTGGGTaGTCAAGTCAGAATGCTTCCCTCAGTATCAACAGC | + |
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Preference number: 3 (lower is better) Translates to: ERETFLKCWGSG*SSQNASLSINS Trigger: GCTGTTGATACTGAGGGAAGCATTCTGACTTGATCACCCACTACCCCAGCATTTCAAAAATGTCTCTCGCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR CCA 72 bp | GCCTACCAAATTCCCAACAACTTGACCCAGTTTACATaGAAACTTTGGCCTCAGCAAATAGCCTTCCCAGCA | + |
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Preference number: 3 (lower is better) Translates to: AYQIPNNLTQFT*KLWPQQIAFPA Trigger: TGCTGGGAAGGCTATTTGCTGAGGCCAAAGTTTCCATGTAAACTGGGTCAAGTTGTTGGGAATTTGGTAGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR CCA 72 bp | ATTCCCAACAACTTGACCCAGTTTACATGGAAACTTTaGCCTCAGCAAATAGCCTTCCCAGCAAATAGCTTG | + |
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Preference number: 3 (lower is better) Translates to: IPNNLTQFTWKL*PQQIAFPANSL Trigger: CAAGCTATTTGCTGGGAAGGCTATTTGCTGAGGCCAAAGTTTCCATGTAAACTGGGTCAAGTTGTTGGGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR-3UTR CAA 90 bp | CCATCATCAATACCTAGTGACAGCCGAAATAAAGAATTCCTGATGTTCCCTGTCACCCTTCCCAGTGCATaGTTCACAATTACTACCTAC | + |
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Preference number: 3 (lower is better) Translates to: PSSIPSDSRNKEFLMFPVTLPSA*FTITTY Trigger: GTAGGTAGTAATTGTGAACAATGCACTGGGAAGGGT...GACAGGGAACATCAGGAATTCTTTATTTCGGCTGTCACTAGGTATTGATGATGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR-3UTR CAA 90 bp | AAAGGAACACATTTTCATCTTAAAGATGGCCTACCAAATTCCCAACAACTTGACGAGCGAGAGACATTTTaGAAATGCTGGGGTAGTGGG | + |
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Preference number: 3 (lower is better) Translates to: KGTHFHLKDGLPNSQQLDERETF*KCWGSG Trigger: CCCACTACCCCAGCATTTCAAAAATGTCTCTCGCTC...GTCAAGTTGTTGGGAATTTGGTAGGCCATCTTTAAGATGAAAATGTGTTCCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR TCA 90 bp | GAGGAGGGACCAGATGAGCCCTCTGGGAGCTTGACAATGCTAGACCTTTGGCTCAAGGAGGCTGAAGACTaGTGCAGAGAGAGCCACAAA | + |
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Preference number: 4 (lower is better) Translates to: EEGPDEPSGSLTMLDLWLKEAED*CRESHK Trigger: TTTGTGGCTCTCTCTGCATCAGTCTTCAGCCTCCTT...GAGCCAAAGGTCTAGCATTGTCAAGCTCCCAGAGGGCTCATCTGGTCCCTCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR GCA 90 bp | GAGGAGGGACCAGATGAGCCCTCTGGGAGCTTGACAATGCTAGACCTTTGGCTCAACCAGGAAGTACTCTaGTTTGTACAGGATGTCACA | + |
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Preference number: 4 (lower is better) Translates to: EEGPDEPSGSLTMLDLWLNQEVL*FVQDVT Trigger: TGTGACATCCTGTACAAAGCAGAGTACTTCCTGGTT...GAGCCAAAGGTCTAGCATTGTCAAGCTCCCAGAGGGCTCATCTGGTCCCTCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR CAA 72 bp | TGCAGGCCAGACCTGATCTCCACCCTTCCCAGTGCATaGTTCACAATTACTACCTACCTACATCATGGTATC | + |
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Preference number: 4 (lower is better) Translates to: CRPDLISTLPSA*FTITTYLHHGI Trigger: GATACCATGATGTAGGTAGGTAGTAATTGTGAACAATGCACTGGGAAGGGTGGAGATCAGGTCTGGCCTGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR TCA 90 bp | CCATCATCAATACCTAGTGACAGCCGAAATAAAGAATTCCTGATGTTCCCTGTCCGATGGCAAGGAGGCTaGAGACTGATGCAGAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: PSSIPSDSRNKEFLMFPVRWQGG*RLMQRE Trigger: CTCTCTCTGCATCAGTCTTCAGCCTCCTTGCCATCG...GACAGGGAACATCAGGAATTCTTTATTTCGGCTGTCACTAGGTATTGATGATGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR TCA 90 bp | AATTCCCAACAACTTGACCCAGTTTACATGGAAACTTTGGCCTCAGCAAATAGCGATGGGGTTGGTACCTaGGTTCAGCACAGCCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: NSQQLDPVYMETLASANSDGVGT*VQHSQN Trigger: GTTCTGGCTGTGCTGAACTCAGGTACCAACCCCATC...GCTATTTGCTGAGGCCAAAGTTTCCATGTAAACTGGGTCAAGTTGTTGGGAATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR TCA 90 bp | AGAAACAGCTCTTGGTCTGCACGACTTAACTCTCACATTTCACCTCATGCTGTATCGTCCTTCTGGGGGTaGGAGGAGTTGTCTGATTTG | + |
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Preference number: 4 (lower is better) Translates to: RNSSWSARLNSHISPHAVSSFWG*EELSDL Trigger: CAAATCAGACAACTCCTCTCACCCCCAGAAGGACGA...TACAGCATGAGGTGAAATGTGAGAGTTAAGTCGTGCAGACCAAGAGCTGTTTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR TCA 90 bp | AAAGGAACACATTTTCATCTTAAAGATGGCCTACCAAATTCCCAACAACTTGACGGCGGCTTCGAGTCCTaGCCAAGGAGTAGATCCTGC | + |
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Preference number: 4 (lower is better) Translates to: KGTHFHLKDGLPNSQQLDGGFES*PRSRSC Trigger: GCAGGATCTACTCCTTGGTCAGGACTCGAAGCCGCC...GTCAAGTTGTTGGGAATTTGGTAGGCCATCTTTAAGATGAAAATGTGTTCCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR TCA 90 bp | AGAAACAGCTCTTGGTCTGCACGACTTAACTCTCACATTTCACCTCATGCTGTATGGTCAGAGTGTAGATaGTGGGGTTGGTACCTGAGT | + |
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Preference number: 4 (lower is better) Translates to: RNSSWSARLNSHISPHAVWSECR*WGWYLS Trigger: ACTCAGGTACCAACCCCATCATCTACACTCTGACCA...TACAGCATGAGGTGAAATGTGAGAGTTAAGTCGTGCAGACCAAGAGCTGTTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR GCA 90 bp | AGAAACAGCTCTTGGTCTGCACGACTTAACTCTCACATTTCACCTCATGCTGTACACAGGTCTTCGCCTTaGAGCCCACATCTAACAGTA | + |
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Preference number: 4 (lower is better) Translates to: RNSSWSARLNSHISPHAVHRSSP*SPHLTV Trigger: TACTGTTAGATGTGGGCTGCAAGGCGAAGACCTGTG...TACAGCATGAGGTGAAATGTGAGAGTTAAGTCGTGCAGACCAAGAGCTGTTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR CCA 90 bp | CCATCATCAATACCTAGTGACAGCCGAAATAAAGAATTCCTGATGTTCCCTGTCAACTGCGACTGGCCTTaGAGATGTTCTTGCGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: PSSIPSDSRNKEFLMFPVNCDWP*RCSCGR Trigger: CCTTCCGCAAGAACATCTCCAAGGCCAGTCGCAGTT...GACAGGGAACATCAGGAATTCTTTATTTCGGCTGTCACTAGGTATTGATGATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR TCA 90 bp | CCATCATCAATACCTAGTGACAGCCGAAATAAAGAATTCCTGATGTTCCCTGTCTCATCTTCAGCATGGTaGTGTAGCGCTCAATGGCGA | + |
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Preference number: 4 (lower is better) Translates to: PSSIPSDSRNKEFLMFPVSSSAW*CSAQWR Trigger: TCGCCATTGAGCGCTACATCACCATGCTGAAGATGA...GACAGGGAACATCAGGAATTCTTTATTTCGGCTGTCACTAGGTATTGATGATGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR GCA 90 bp | AAAAGTGCCAAAGGTGCTGTAGGGGTTAGAGAAAGACAGCAAGAAACAGCTCTTCCCCGATGTTCAACTTaGCTGTGTAGTTGTAATGCC | + |
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Preference number: 4 (lower is better) Translates to: KSAKGAVGVRERQQETALPRCST*LCSCNA Trigger: GGCATTACAACTACACAGGCAAGTTGAACATCGGGG...AAGAGCTGTTTCTTGCTGTCTTTCTCTAACCCCTACAGCACCTTTGGCACTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR GCA 90 bp | TCATCAATACCTAGTGACAGCCGAAATAAAGAATTCCTGATGTTCCCTGTCAGTGAGACTTCTCAGAACTaGGACTGGCCTTGGAGATGT | + |
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Preference number: 4 (lower is better) Translates to: SSIPSDSRNKEFLMFPVSETSQN*DWPWRC Trigger: ACATCTCCAAGGCCAGTCGCAGTTCTGAGAAGTCTC...ACTGACAGGGAACATCAGGAATTCTTTATTTCGGCTGTCACTAGGTATTGATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR TCA 90 bp | AAAGGAACACATTTTCATCTTAAAGATGGCCTACCAAATTCCCAACAACTTGACGGGCTAGGTTGCCTATaGAATAGTACATGGGCCGGT | + |
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Preference number: 4 (lower is better) Translates to: KGTHFHLKDGLPNSQQLDGLGCL*NSTWAG Trigger: ACCGGCCCATGTACTATTTCATAGGCAACCTAGCCC...GTCAAGTTGTTGGGAATTTGGTAGGCCATCTTTAAGATGAAAATGTGTTCCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR TCA 90 bp | AAAGGAACACATTTTCATCTTAAAGATGGCCTACCAAATTCCCAACAACTTGACAAAGCAGGAGCAGAGTaGAGACGGTGGTGCAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: KGTHFHLKDGLPNSQQLDKAGAE*RRWCRR Trigger: TCTTCTGCACCACCGTCTTCACTCTGCTCCTGCTTT...GTCAAGTTGTTGGGAATTTGGTAGGCCATCTTTAAGATGAAAATGTGTTCCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR TCA 90 bp | TCTGAAATCATCAATAAAAGTGCCAAAGGTGCTGTAGGGGTTAGAGAAAGACAGGTGAGAGGAGTTGTCTaGTTTGCTGCGGCTAAATTC | + |
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Preference number: 4 (lower is better) Translates to: SEIINKSAKGAVGVRERQVRGVV*FAAAKF Trigger: GAATTTAGCCGCAGCAAATCAGACAACTCCTCTCAC...CTGTCTTTCTCTAACCCCTACAGCACCTTTGGCACTTTTATTGATGATTTCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR CCA 90 bp | TCATCAATACCTAGTGACAGCCGAAATAAAGAATTCCTGATGTTCCCTGTCAGTCAGCAGAGTCTCCGTTaGGGCATTTGCAACAAGATA | + |
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Preference number: 4 (lower is better) Translates to: SSIPSDSRNKEFLMFPVSQQSLR*GICNKI Trigger: TATCTTGTTGCAAATGCCCCAACGGAGACTCTGCTG...ACTGACAGGGAACATCAGGAATTCTTTATTTCGGCTGTCACTAGGTATTGATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR TCA 90 bp | AGAAACAGCTCTTGGTCTGCACGACTTAACTCTCACATTTCACCTCATGCTGTATGTAATGCCGGACTATaGTATCATAGTTCCCATAGT | + |
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Preference number: 4 (lower is better) Translates to: RNSSWSARLNSHISPHAVCNAGL*YHSSHS Trigger: ACTATGGGAACTATGATATCATAGTCCGGCATTACA...TACAGCATGAGGTGAAATGTGAGAGTTAAGTCGTGCAGACCAAGAGCTGTTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR CCA 90 bp | AAAGGAACACATTTTCATCTTAAAGATGGCCTACCAAATTCCCAACAACTTGACCGACATAATGGTCTCTaGGTTGTCCCCATCGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: KGTHFHLKDGLPNSQQLDRHNGL*VVPIVL Trigger: AAGGACGATGGGGACAACCCAGAGACCATTATGTCG...GTCAAGTTGTTGGGAATTTGGTAGGCCATCTTTAAGATGAAAATGTGTTCCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR CCA 90 bp | AAAGGAACACATTTTCATCTTAAAGATGGCCTACCAAATTCCCAACAACTTGACGCTAAATTCCATGCCTaGGATGATGGGCCTCTTGAA | + |
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Preference number: 4 (lower is better) Translates to: KGTHFHLKDGLPNSQQLDAKFHA*DDGPLE Trigger: TTCAAGAGGCCCATCATCCCAGGCATGGAATTTAGC...GTCAAGTTGTTGGGAATTTGGTAGGCCATCTTTAAGATGAAAATGTGTTCCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| 3UTR CAA 72 bp | TGTTCTTTAAACAAAATACAACTCTCCCCCAGTTGGTaGAAATGGATCACACAACATTCTGAAATCATCAAT | + |
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Preference number: 4 (lower is better) Translates to: CSLNKIQLSPSW*KWITQHSEIIN Trigger: ATTGATGATTTCAGAATGTTGTGTGATCCATTTCAACCAACTGGGGGAGAGTTGTATTTTGTTTAAAGAACA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS TCA 90 bp | CTCTGGGTTGTCCCCATCGTCCTTCTGGGGGTGAGAGGAGTTGTCTaGTTTGCTGCGGCTAAATTCCATGCCTGGGATGATGGGCCTCTT | + |
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Preference number: 5 (lower is better) Translates to: LWVVPIVLLGVRGVV*FAAAKFHAWDDGPL Trigger: AAGAGGCCCATCATCCCAGGCATGGAATTTAGCCGCAGCAAATCAGACAACTCCTCTCACCCCCAGAAGGACGATGGGGACAACCCAGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR CAA 90 bp | GAGGAGGGACCAGATGAGCCCTCTGGGAGCTTGACAATGCTAGACCTTTGGCTCATGGGCCTCTTGAATTaGCCAGCAGAGTCTCCGTTG | + |
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Preference number: 5 (lower is better) Translates to: EEGPDEPSGSLTMLDLWLMGLLN*PAESPL Trigger: CAACGGAGACTCTGCTGGCAAATTCAAGAGGCCCAT...GAGCCAAAGGTCTAGCATTGTCAAGCTCCCAGAGGGCTCATCTGGTCCCTCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR CAA 90 bp | GAGGAGGGACCAGATGAGCCCTCTGGGAGCTTGACAATGCTAGACCTTTGGCTCATAATGGTCTCTGGGTaGTCCCCATCGTCCTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: EEGPDEPSGSLTMLDLWLIMVSG*SPSSFW Trigger: CCAGAAGGACGATGGGGACAACCCAGAGACCATTAT...GAGCCAAAGGTCTAGCATTGTCAAGCTCCCAGAGGGCTCATCTGGTCCCTCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS TCA 90 bp | GACGACATAATGGTCTCTGGGTTGTCCCCATCGTCCTTCTGGGGGTaGGAGGAGTTGTCTGATTTGCTGCGGCTAAATTCCATGCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: DDIMVSGLSPSSFWG*EELSDLLRLNSMPG Trigger: CCCAGGCATGGAATTTAGCCGCAGCAAATCAGACAACTCCTCTCACCCCCAGAAGGACGATGGGGACAACCCAGAGACCATTATGTCGTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS TCA 90 bp | GTTGTAATGCCGGACTATGATATCATAGTTCCCATAGTCAGAGACTaGGCTGCGGAGAGCTTTAACCTCCGGGATGCTAGTGGACACCAT | + |
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Preference number: 5 (lower is better) Translates to: VVMPDYDIIVPIVRD*AAESFNLRDASGHH Trigger: ATGGTGTCCACTAGCATCCCGGAGGTTAAAGCTCTCCGCAGCTCAGTCTCTGACTATGGGAACTATGATATCATAGTCCGGCATTACAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR CAA 90 bp | AATTCCCAACAACTTGACCCAGTTTACATGGAAACTTTGGCCTCAGCAAATAGCGAACTGCGACTGGCCTaGGAGATGTTCTTGCGGAAG | + |
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Preference number: 5 (lower is better) Translates to: NSQQLDPVYMETLASANSELRLA*EMFLRK Trigger: CTTCCGCAAGAACATCTCCAAGGCCAGTCGCAGTTC...GCTATTTGCTGAGGCCAAAGTTTCCATGTAAACTGGGTCAAGTTGTTGGGAATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR CAA 90 bp | AAAAGTGCCAAAGGTGCTGTAGGGGTTAGAGAAAGACAGCAAGAAACAGCTCTTGGGATGATGGGCCTCTaGAATTTGCCAGCAGAGTCT | + |
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Preference number: 5 (lower is better) Translates to: KSAKGAVGVRERQQETALGMMGL*NLPAES Trigger: AGACTCTGCTGGCAAATTCAAGAGGCCCATCATCCC...AAGAGCTGTTTCTTGCTGTCTTTCTCTAACCCCTACAGCACCTTTGGCACTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR CAA 90 bp | AATTCCCAACAACTTGACCCAGTTTACATGGAAACTTTGGCCTCAGCAAATAGCCCAGCAGAGTCTCCGTaGGGGCATTTGCAACAAGAT | + |
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Preference number: 5 (lower is better) Translates to: NSQQLDPVYMETLASANSPAESP*GHLQQD Trigger: ATCTTGTTGCAAATGCCCCAACGGAGACTCTGCTGG...GCTATTTGCTGAGGCCAAAGTTTCCATGTAAACTGGGTCAAGTTGTTGGGAATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR CAA 90 bp | AGAAACAGCTCTTGGTCTGCACGACTTAACTCTCACATTTCACCTCATGCTGTAGGCCGGTGGAACTTCTaGGTTTTCCAAATAGTTAGC | + |
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Preference number: 5 (lower is better) Translates to: RNSSWSARLNSHISPHAVGRWNF*VFQIVS Trigger: GCTAACTATTTGGAAAACCAAGAAGTTCCACCGGCC...TACAGCATGAGGTGAAATGTGAGAGTTAAGTCGTGCAGACCAAGAGCTGTTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR CAA 90 bp | AAAGGAACACATTTTCATCTTAAAGATGGCCTACCAAATTCCCAACAACTTGACTCACAGGTCTTCGCCTaGCAGCCCACATCTAACAGT | + |
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Preference number: 5 (lower is better) Translates to: KGTHFHLKDGLPNSQQLDSQVFA*QPTSNS Trigger: ACTGTTAGATGTGGGCTGCAAGGCGAAGACCTGTGA...GTCAAGTTGTTGGGAATTTGGTAGGCCATCTTTAAGATGAAAATGTGTTCCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS-3UTR CAA 90 bp | TCTGAAATCATCAATAAAAGTGCCAAAGGTGCTGTAGGGGTTAGAGAAAGACAGAGGAAGTACTCTGCTTaGTACAGGATGTCACAGGTC | + |
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Preference number: 5 (lower is better) Translates to: SEIINKSAKGAVGVRERQRKYSA*YRMSQV Trigger: GACCTGTGACATCCTGTACAAAGCAGAGTACTTCCT...CTGTCTTTCTCTAACCCCTACAGCACCTTTGGCACTTTTATTGATGATTTCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS CAA 90 bp | ACCGTCTTCAGCAAGGCCAGAGACTTCTCAGAACTGCGACTGGCCTaGGAGATGTTCTTGCGGAAGGTCAGGCGGCGGCTTCGAGTCCTG | + |
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Preference number: 6 (lower is better) Translates to: TVFSKARDFSELRLA*EMFLRKVRRRLRVL Trigger: CAGGACTCGAAGCCGCCGCCTGACCTTCCGCAAGAACATCTCCAAGGCCAGTCGCAGTTCTGAGAAGTCTCTGGCCTTGCTGAAGACGGT 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS CAA 90 bp | ATGCCTGGGATGATGGGCCTCTTGAATTTGCCAGCAGAGTCTCCGTaGGGGCATTTGCAACAAGATACGATCCGGATGAAGGCCCGGCGC | + |
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Preference number: 6 (lower is better) Translates to: MPGMMGLLNLPAESP*GHLQQDTIRMKARR Trigger: GCGCCGGGCCTTCATCCGGATCGTATCTTGTTGCAAATGCCCCAACGGAGACTCTGCTGGCAAATTCAAGAGGCCCATCATCCCAGGCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS CAA 72 bp | CAGCAGGCGCTGATCAGCAGAAAGGAGCGCGAGCTGTaGCTCCCGTTGTGTAGTTTCATCTTCAGCATGGTG | + |
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Preference number: 6 (lower is better) Translates to: QQALISRKEREL*LPLCSFIFSMV Trigger: CACCATGCTGAAGATGAAACTACACAACGGGAGCAACAGCTCGCGCTCCTTTCTGCTGATCAGCGCCTGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS TCA 72 bp | GTCCCCATCGTCCTTCTGGGGGTGAGAGGAGTTGTCTaGTTTGCTGCGGCTAAATTCCATGCCTGGGATGAT | + |
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Preference number: 6 (lower is better) Translates to: VPIVLLGVRGVV*FAAAKFHAWDD Trigger: ATCATCCCAGGCATGGAATTTAGCCGCAGCAAATCAGACAACTCCTCTCACCCCCAGAAGGACGATGGGGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS CAA 72 bp | GAGTTCAGCACAGCCAGAACCAGGAAGTACTCTGCTTaGTACAGGATGTCACAGGTCTTCGCCTTGCAGCCC | + |
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Preference number: 6 (lower is better) Translates to: EFSTARTRKYSA*YRMSQVFALQP Trigger: GGGCTGCAAGGCGAAGACCTGTGACATCCTGTACAAAGCAGAGTACTTCCTGGTTCTGGCTGTGCTGAACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS CAA 72 bp | CTGCGGCTAAATTCCATGCCTGGGATGATGGGCCTCTaGAATTTGCCAGCAGAGTCTCCGTTGGGGCATTTG | + |
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Preference number: 6 (lower is better) Translates to: LRLNSMPGMMGL*NLPAESPLGHL Trigger: CAAATGCCCCAACGGAGACTCTGCTGGCAAATTCAAGAGGCCCATCATCCCAGGCATGGAATTTAGCCGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS CAA 90 bp | TTGGTACCTGAGTTCAGCACAGCCAGAACCAGGAAGTACTCTGCTTaGTACAGGATGTCACAGGTCTTCGCCTTGCAGCCCACATCTAAC | + |
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Preference number: 6 (lower is better) Translates to: LVPEFSTARTRKYSA*YRMSQVFALQPTSN Trigger: GTTAGATGTGGGCTGCAAGGCGAAGACCTGTGACATCCTGTACAAAGCAGAGTACTTCCTGGTTCTGGCTGTGCTGAACTCAGGTACCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS CAA 90 bp | TTGCTGCGGCTAAATTCCATGCCTGGGATGATGGGCCTCTTGAATTaGCCAGCAGAGTCTCCGTTGGGGCATTTGCAACAAGATACGATC | + |
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Preference number: 6 (lower is better) Translates to: LLRLNSMPGMMGLLN*PAESPLGHLQQDTI Trigger: GATCGTATCTTGTTGCAAATGCCCCAACGGAGACTCTGCTGGCAAATTCAAGAGGCCCATCATCCCAGGCATGGAATTTAGCCGCAGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS TCA 72 bp | CGCCTGCTAATAGGTCCGAGAGGGCTAGGTTGCCTATaGAATAGTACATGGGCCGGTGGAACTTCTTGGTTT | + |
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Preference number: 6 (lower is better) Translates to: RLLIGPRGLGCL*NSTWAGGTSWF Trigger: AAACCAAGAAGTTCCACCGGCCCATGTACTATTTCATAGGCAACCTAGCCCTCTCGGACCTATTAGCAGGCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS CCA 72 bp | AGAAGAATTGACGTTTCCAGACGACATAATGGTCTCTaGGTTGTCCCCATCGTCCTTCTGGGGGTGAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: RRIDVSRRHNGL*VVPIVLLGVRG Trigger: TCCTCTCACCCCCAGAAGGACGATGGGGACAACCCAGAGACCATTATGTCGTCTGGAAACGTCAATTCTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS CAA 90 bp | TCTGATTTGCTGCGGCTAAATTCCATGCCTGGGATGATGGGCCTCTaGAATTTGCCAGCAGAGTCTCCGTTGGGGCATTTGCAACAAGAT | + |
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Preference number: 6 (lower is better) Translates to: SDLLRLNSMPGMMGL*NLPAESPLGHLQQD Trigger: ATCTTGTTGCAAATGCCCCAACGGAGACTCTGCTGGCAAATTCAAGAGGCCCATCATCCCAGGCATGGAATTTAGCCGCAGCAAATCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS CAA 72 bp | ATGATGGGCCTCTTGAATTTGCCAGCAGAGTCTCCGTaGGGGCATTTGCAACAAGATACGATCCGGATGAAG | + |
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Preference number: 6 (lower is better) Translates to: MMGLLNLPAESP*GHLQQDTIRMK Trigger: CTTCATCCGGATCGTATCTTGTTGCAAATGCCCCAACGGAGACTCTGCTGGCAAATTCAAGAGGCCCATCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS CCA 72 bp | ATGAGAATGAACACCACTGAAGTCAGTTTAATGCCATaGTCCTTCTCCGCCCCGATGTTCAACTTGCCTGTG | + |
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Preference number: 6 (lower is better) Translates to: MRMNTTEVSLMP*SFSAPMFNLPV Trigger: CACAGGCAAGTTGAACATCGGGGCGGAGAAGGACCATGGCATTAAACTGACTTCAGTGGTGTTCATTCTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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| CDS CAA 72 bp | TACTCTGCTTTGTACAGGATGTCACAGGTCTTCGCCTaGCAGCCCACATCTAACAGTAGTAGGATGAAGAGA | + |
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Preference number: 6 (lower is better) Translates to: YSALYRMSQVFA*QPTSNSSRMKR Trigger: TCTCTTCATCCTACTACTGTTAGATGTGGGCTGCAAGGCGAAGACCTGTGACATCCTGTACAAAGCAGAGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055676.4 |
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