Pregenerated sensors for S100Z (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021679Ensembl transcript IDs: ENSMUST00000022186.5
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TTGTCTTTATTGGCGTCCAGGTCCTGCATTATCTTATCCACCAACTaGGGATCCTTTTGGCATGTGAGGAACTCTGTGAGTTCTCGCTGT | + |
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Preference number: 5 (lower is better) Translates to: LSLLASRSCIILSTN*GSFWHVRNSVSSRC Trigger: ACAGCGAGAACTCACAGAGTTCCTCACATGCCAAAAGGATCCCCAGTTGGTGGATAAGATAATGCAGGACCTGGACGCCAATAAAGACAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022186.5 |
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| CDS GCA 90 bp | CTTCATTTGCTCTACAAAGTAATCGTTACACGCAACCGTCAGAGCTaGCACCATGACCACAAACTCATTAAAATCCACTTCGTTGTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: LHLLYKVIVTRNRQS*HHDHKLIKIHFVVF Trigger: AAAGACAACGAAGTGGATTTTAATGAGTTTGTGGTCATGGTGGCAGCTCTGACGGTTGCGTGTAACGATTACTTTGTAGAGCAAATGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022186.5 |
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| CDS CCA 72 bp | AGCTTGAACCTGTCGCCCTCCTTGCAAGAGTACCGGTaGAAGATGCGAATCATGGTGTCCATAGCCATCTCC | + |
|
Preference number: 6 (lower is better) Translates to: SLNLSPSLQEYR*KMRIMVSIAIS Trigger: GGAGATGGCTATGGACACCATGATTCGCATCTTCCACCGGTACTCTTGCAAGGAGGGCGACAGGTTCAAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022186.5 |
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| CDS CAA 90 bp | AACTCTGTGAGTTCTCGCTGTAACAGCATCTTCAGTTCCCCCTTGTaGAGCTTGAACCTGTCGCCCTCCTTGCAAGAGTACCGGTGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: NSVSSRCNSIFSSPL*SLNLSPSLQEYRWK Trigger: CTTCCACCGGTACTCTTGCAAGGAGGGCGACAGGTTCAAGCTCAACAAGGGGGAACTGAAGATGCTGTTACAGCGAGAACTCACAGAGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022186.5 |
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| CDS GCA 72 bp | CTCTACAAAGTAATCGTTACACGCAACCGTCAGAGCTaGCACCATGACCACAAACTCATTAAAATCCACTTC | + |
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Preference number: 6 (lower is better) Translates to: LYKVIVTRNRQS*HHDHKLIKIHF Trigger: GAAGTGGATTTTAATGAGTTTGTGGTCATGGTGGCAGCTCTGACGGTTGCGTGTAACGATTACTTTGTAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022186.5 |
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| CDS CAA 72 bp | ACCACAAACTCATTAAAATCCACTTCGTTGTCTTTATaGGCGTCCAGGTCCTGCATTATCTTATCCACCAAC | + |
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Preference number: 6 (lower is better) Translates to: TTNSLKSTSLSL*ASRSCIILSTN Trigger: GTTGGTGGATAAGATAATGCAGGACCTGGACGCCAATAAAGACAACGAAGTGGATTTTAATGAGTTTGTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022186.5 |
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