Pregenerated sensors for S100A9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056071Ensembl transcript IDs: ENSMUST00000069960.12, ENSMUST00000117167.2
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | AGACTTATTTATTATTTATCTTATCATTTCCCAGAACAAAGGCCATaGAGTAAGCCATTCCCTTTAGACTTGGTTGGGCAGCTGTCACAT | + |
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Preference number: 2 (lower is better) Translates to: RLIYYLSYHFPEQRP*SKPFPLDLVGQLSH Trigger: ATGTGACAGCTGCCCAACCAAGTCTAAAGGGAATGGCTTACTCAATGGCCTTTGTTCTGGGAAATGATAAGATAAATAATAAATAAGTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS-3UTR TCA 90 bp | CCAGAACAAAGGCCATTGAGTAAGCCATTCCCTTTAGACTTGGTTGGGCAGCTGTCCTTCCTAGAGTATTaGTGGAAGGTGTCGATGATG | + |
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Preference number: 4 (lower is better) Translates to: PEQRPLSKPFPLDLVGQLSFLEY*WKVSMM Trigger: CATCATCGACACCTTCCATCAATACTCTAGGAAGGA...CAGCTGCCCAACCAAGTCTAAAGGGAATGGCTTACTCAATGGCCTTTGTTCTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS-3UTR TCA 90 bp | GAACAAAGGCCATTGAGTAAGCCATTCCCTTTAGACTTGGTTGGGCAGCTGTCACTTCCACCATTTGTCTaGATTCCTTCTTGCTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: EQRPLSKPFPLDLVGQLSLPPFV*IPSCSG Trigger: CCCTGAGCAAGAAGGAATTCAGACAAATGGTGGAAG...TGACAGCTGCCCAACCAAGTCTAAAGGGAATGGCTTACTCAATGGCCTTTGTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS-3UTR TCA 90 bp | TTCCCAGAACAAAGGCCATTGAGTAAGCCATTCCCTTTAGACTTGGTTGGGCAGTCCTTCCTAGAGTATTaGTGGAAGGTGTCGATGATG | + |
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Preference number: 4 (lower is better) Translates to: FPEQRPLSKPFPLDLVGQSFLEY*WKVSMM Trigger: CATCATCGACACCTTCCATCAATACTCTAGGAAGGA...CTGCCCAACCAAGTCTAAAGGGAATGGCTTACTCAATGGCCTTTGTTCTGGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS-3UTR GCA 90 bp | TCTTATCATTTCCCAGAACAAAGGCCATTGAGTAAGCCATTCCCTTTAGACTTGACTTCCCACAGCCTTTaGCATGACTGTGGCCATGCC | + |
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Preference number: 4 (lower is better) Translates to: SYHFPEQRPLSKPFPLDLTSHSL*HDCGHA Trigger: GGCATGGCCACAGTCATGGCAAAGGCTGTGGGAAGT...CAAGTCTAAAGGGAATGGCTTACTCAATGGCCTTTGTTCTGGGAAATGATAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS-3UTR TCA 90 bp | GAACAAAGGCCATTGAGTAAGCCATTCCCTTTAGACTTGGTTGGGCAGCTGTCATCATGCAGCTTCTCATaGCAGGCAAAGATCAACTTT | + |
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Preference number: 4 (lower is better) Translates to: EQRPLSKPFPLDLVGQLSSCSFS*QAKINF Trigger: AAAGTTGATCTTTGCCTGTCATGAGAAGCTGCATGA...TGACAGCTGCCCAACCAAGTCTAAAGGGAATGGCTTACTCAATGGCCTTTGTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS-3UTR GCA 90 bp | CAAAGGCCATTGAGTAAGCCATTCCCTTTAGACTTGGTTGGGCAGCTGTCACATAAAGGTTGCCAACTGTaGTTCCACCATTTGTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: QRPLSKPFPLDLVGQLSHKGCQL*FHHLSE Trigger: TTCAGACAAATGGTGGAAGCACAGTTGGCAACCTTT...ATGTGACAGCTGCCCAACCAAGTCTAAAGGGAATGGCTTACTCAATGGCCTTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS-3UTR GCA 90 bp | GAACAAAGGCCATTGAGTAAGCCATTCCCTTTAGACTTGGTTGGGCAGCTGTCATTTCTTCATAAAGGTTaGCAACTGTGCTTCCACCAT | + |
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Preference number: 4 (lower is better) Translates to: EQRPLSKPFPLDLVGQLSFLHKG*QLCFHH Trigger: ATGGTGGAAGCACAGTTGGCAACCTTTATGAAGAAA...TGACAGCTGCCCAACCAAGTCTAAAGGGAATGGCTTACTCAATGGCCTTTGTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS-3UTR TCA 90 bp | TCTTATCATTTCCCAGAACAAAGGCCATTGAGTAAGCCATTCCCTTTAGACTTGCTTCCACCATTTGTCTaGATTCCTTCTTGCTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: SYHFPEQRPLSKPFPLDLLPPFV*IPSCSG Trigger: CCCTGAGCAAGAAGGAATTCAGACAAATGGTGGAAG...CAAGTCTAAAGGGAATGGCTTACTCAATGGCCTTTGTTCTGGGAAATGATAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS-3UTR TCA 90 bp | TATTTATCTTATCATTTCCCAGAACAAAGGCCATTGAGTAAGCCATTCCCTTTATCCTCAAAGCTCAGCTaGTTGTCCTGGTTTGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: YLSYHFPEQRPLSKPFPLSSKLS*LSWFVS Trigger: GGACACAAACCAGGACAATCAGCTGAGCTTTGAGGA...TAAAGGGAATGGCTTACTCAATGGCCTTTGTTCTGGGAAATGATAAGATAAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS-3UTR GCA 90 bp | TCTTATCATTTCCCAGAACAAAGGCCATTGAGTAAGCCATTCCCTTTAGACTTGAAAGGTTGCCAACTGTaGTTCCACCATTTGTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: SYHFPEQRPLSKPFPLDLKGCQL*FHHLSE Trigger: TTCAGACAAATGGTGGAAGCACAGTTGGCAACCTTT...CAAGTCTAAAGGGAATGGCTTACTCAATGGCCTTTGTTCTGGGAAATGATAAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS-3UTR TCA 90 bp | TTATCTTATCATTTCCCAGAACAAAGGCCATTGAGTAAGCCATTCCCTTTAGACTCATGCAGCTTCTCATaGCAGGCAAAGATCAACTTT | + |
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Preference number: 4 (lower is better) Translates to: LSYHFPEQRPLSKPFPLDSCSFS*QAKINF Trigger: AAAGTTGATCTTTGCCTGTCATGAGAAGCTGCATGA...GTCTAAAGGGAATGGCTTACTCAATGGCCTTTGTTCTGGGAAATGATAAGATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| 3UTR CAA 72 bp | TATTATTTATCTTATCATTTCCCAGAACAAAGGCCATaGAGTAAGCCATTCCCTTTAGACTTGGTTGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: YYLSYHFPEQRP*SKPFPLDLVGQ Trigger: CTGCCCAACCAAGTCTAAAGGGAATGGCTTACTCAATGGCCTTTGTTCTGGGAAATGATAAGATAAATAATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS-3UTR GCA 90 bp | TATTATTTATCTTATCATTTCCCAGAACAAAGGCCATTGAGTAAGCCATTCCCTTTTCTTCATAAAGGTTaGCAACTGTGCTTCCACCAT | + |
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Preference number: 4 (lower is better) Translates to: YYLSYHFPEQRPLSKPFPFLHKG*QLCFHH Trigger: ATGGTGGAAGCACAGTTGGCAACCTTTATGAAGAAA...AGGGAATGGCTTACTCAATGGCCTTTGTTCTGGGAAATGATAAGATAAATAATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS GCA 90 bp | TGGGTTGTTCTCATGCAGCTTCTCATGACAGGCAAAGATCAACTTTaGCATCAGCATCATACACTCCTCAAAGCTCAGCTGATTGTCCTG | + |
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Preference number: 5 (lower is better) Translates to: WVVLMQLLMTGKDQL*HQHHTLLKAQLIVL Trigger: CAGGACAATCAGCTGAGCTTTGAGGAGTGTATGATGCTGATGGCAAAGTTGATCTTTGCCTGTCATGAGAAGCTGCATGAGAACAACCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS GCA 90 bp | GAGGGCTTCATTTCTCTTCTCTTTCTTCATAAAGGTTGCCAACTGTaGTTCCACCATTTGTCTGAATTCCTTCTTGCTCAGGGTGTCAGG | + |
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Preference number: 5 (lower is better) Translates to: EGFISLLFLHKGCQL*FHHLSEFLLAQGVR Trigger: CCTGACACCCTGAGCAAGAAGGAATTCAGACAAATGGTGGAAGCACAGTTGGCAACCTTTATGAAGAAAGAGAAGAGAAATGAAGCCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS TCA 90 bp | AAGATCAACTTTGCCATCAGCATCATACACTCCTCAAAGCTCAGCTaGTTGTCCTGGTTTGTGTCCAGGTCCTCCATGATGTCATTTATG | + |
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Preference number: 5 (lower is better) Translates to: KINFAISIIHSSKLS*LSWFVSRSSMMSFM Trigger: CATAAATGACATCATGGAGGACCTGGACACAAACCAGGACAATCAGCTGAGCTTTGAGGAGTGTATGATGCTGATGGCAAAGTTGATCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS CCA 72 bp | CCCACAGCCTTTGCCATGACTGTGGCCATGCCCACGTaGGTTGTTCTCATGCAGCTTCTCATGACAGGCAAA | + |
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Preference number: 6 (lower is better) Translates to: PTAFAMTVAMPT*VVLMQLLMTGK Trigger: TTTGCCTGTCATGAGAAGCTGCATGAGAACAACCCACGTGGGCATGGCCACAGTCATGGCAAAGGCTGTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS CAA 72 bp | GCTCAGGGTGTCAGGGTGTCCTTCCTTCCTAGAGTATaGATGGAAGGTGTCGATGATGGTGGTTATGCTGCG | + |
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Preference number: 6 (lower is better) Translates to: AQGVRVSFLPRV*MEGVDDGGYAA Trigger: CGCAGCATAACCACCATCATCGACACCTTCCATCAATACTCTAGGAAGGAAGGACACCCTGACACCCTGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS CAA 72 bp | GCCAACTGTGCTTCCACCATTTGTCTGAATTCCTTCTaGCTCAGGGTGTCAGGGTGTCCTTCCTTCCTAGAG | + |
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Preference number: 6 (lower is better) Translates to: ANCASTICLNSF*LRVSGCPSFLE Trigger: CTCTAGGAAGGAAGGACACCCTGACACCCTGAGCAAGAAGGAATTCAGACAAATGGTGGAAGCACAGTTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS TCA 72 bp | CCATGCCCACGTGGGTTGTTCTCATGCAGCTTCTCATaGCAGGCAAAGATCAACTTTGCCATCAGCATCATA | + |
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Preference number: 6 (lower is better) Translates to: PCPRGLFSCSFS*QAKINFAISII Trigger: TATGATGCTGATGGCAAAGTTGATCTTTGCCTGTCATGAGAAGCTGCATGAGAACAACCCACGTGGGCATGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS CAA 90 bp | GTGGGTTGTTCTCATGCAGCTTCTCATGACAGGCAAAGATCAACTTaGCCATCAGCATCATACACTCCTCAAAGCTCAGCTGATTGTCCT | + |
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Preference number: 6 (lower is better) Translates to: VGCSHAASHDRQRST*PSASYTPQSSADCP Trigger: AGGACAATCAGCTGAGCTTTGAGGAGTGTATGATGCTGATGGCAAAGTTGATCTTTGCCTGTCATGAGAAGCTGCATGAGAACAACCCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS GCA 72 bp | CTCATGCAGCTTCTCATGACAGGCAAAGATCAACTTTaGCATCAGCATCATACACTCCTCAAAGCTCAGCTG | + |
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Preference number: 6 (lower is better) Translates to: LMQLLMTGKDQL*HQHHTLLKAQL Trigger: CAGCTGAGCTTTGAGGAGTGTATGATGCTGATGGCAAAGTTGATCTTTGCCTGTCATGAGAAGCTGCATGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS CAA 72 bp | TTTCTTCATAAAGGTTGCCAACTGTGCTTCCACCATTaGTCTGAATTCCTTCTTGCTCAGGGTGTCAGGGTG | + |
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Preference number: 6 (lower is better) Translates to: FLHKGCQLCFHH*SEFLLAQGVRV Trigger: CACCCTGACACCCTGAGCAAGAAGGAATTCAGACAAATGGTGGAAGCACAGTTGGCAACCTTTATGAAGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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| CDS GCA 72 bp | ATTTCTCTTCTCTTTCTTCATAAAGGTTGCCAACTGTaGTTCCACCATTTGTCTGAATTCCTTCTTGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: ISLLFLHKGCQL*FHHLSEFLLAQ Trigger: CTGAGCAAGAAGGAATTCAGACAAATGGTGGAAGCACAGTTGGCAACCTTTATGAAGAAAGAGAAGAGAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069960.12 ENSMUST00000117167.2 |
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