Pregenerated sensors for S100A8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000056054

Ensembl transcript IDs: ENSMUST00000069927.10

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 72 bp	TTCCTTGTATATTGGAATAATTGTGGTAGACATCAATaGGGTTGCTCAAGGCCTTCTCCAGTTCAGACGGCA	+
Preference number: 6 (lower is better) Translates to: FLVYWNNCGRHQ*GCSRPSPVQTA Trigger: TGCCGTCTGAACTGGAGAAGGCCTTGAGCAACCTCATTGATGTCTACCACAATTATTCCAATATACAAGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069927.10
CDS CAA 72 bp	ATCACCATCGCAAGGAACTCCTCGAAGTTAATTGCATaGTCACTATTGATGTCCAATTCTCTGAACAAGTTT	+
Preference number: 6 (lower is better) Translates to: ITIARNSSKLIA*SLLMSNSLNKF Trigger: AAACTTGTTCAGAGAATTGGACATCAATAGTGACAATGCAATTAACTTCGAGGAGTTCCTTGCGATGGTGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069927.10
CDS CAA 90 bp	GACCATTTTCTTGAAGTCATTCTTGTAGAGGGCATGGTGATTTCCTaGTATATTGGAATAATTGTGGTAGACATCAATGAGGTTGCTCAA	+
Preference number: 6 (lower is better) Translates to: DHFLEVILVEGMVIS*YIGIIVVDINEVAQ Trigger: TTGAGCAACCTCATTGATGTCTACCACAATTATTCCAATATACAAGGAAATCACCATGCCCTCTACAAGAATGACTTCAAGAAAATGGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069927.10
CDS CAA 72 bp	CTTGAAGTCATTCTTGTAGAGGGCATGGTGATTTCCTaGTATATTGGAATAATTGTGGTAGACATCAATGAG	+
Preference number: 6 (lower is better) Translates to: LEVILVEGMVIS*YIGIIVVDINE Trigger: CTCATTGATGTCTACCACAATTATTCCAATATACAAGGAAATCACCATGCCCTCTACAAGAATGACTTCAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069927.10
CDS CAA 90 bp	ATCACCATCGCAAGGAACTCCTCGAAGTTAATTGCATTGTCACTATaGATGTCCAATTCTCTGAACAAGTTTTCGATATTTATATTCTGC	+
Preference number: 6 (lower is better) Translates to: ITIARNSSKLIALSL*MSNSLNKFSIFIFC Trigger: GCAGAATATAAATATCGAAAACTTGTTCAGAGAATTGGACATCAATAGTGACAATGCAATTAACTTCGAGGAGTTCCTTGCGATGGTGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069927.10
CDS TCA 72 bp	CTGAACAAGTTTTCGATATTTATATTCTGCACAAACTaGGGACACTCAGTAGTGACCATTTTCTTGAAGTCA	+
Preference number: 6 (lower is better) Translates to: LNKFSIFIFCTN*GHSVVTIFLKS Trigger: TGACTTCAAGAAAATGGTCACTACTGAGTGTCCTCAGTTTGTGCAGAATATAAATATCGAAAACTTGTTCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069927.10
CDS CAA 72 bp	GCAAGGAACTCCTCGAAGTTAATTGCATTGTCACTATaGATGTCCAATTCTCTGAACAAGTTTTCGATATTT	+
Preference number: 6 (lower is better) Translates to: ARNSSKLIALSL*MSNSLNKFSIF Trigger: AAATATCGAAAACTTGTTCAGAGAATTGGACATCAATAGTGACAATGCAATTAACTTCGAGGAGTTCCTTGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069927.10

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