Pregenerated sensors for S100A7A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063767Ensembl transcript IDs: ENSMUST00000079286.4
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTTATTTCCAGAGTGCTCTCTGCTGTTTCAGGCATACCATCTGGGTCTCTGGTGCTGGGATTAAAGGCATaGGCCACCGGCTGGCACTTT | + |
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Preference number: 2 (lower is better) Translates to: FISRVLSAVSGIPSGSLVLGLKA*ATGWHF Trigger: AAAGTGCCAGCCGGTGGCTCATGCCTTTAATCCCAG...CACCAGAGACCCAGATGGTATGCCTGAAACAGCAGAGAGCACTCTGGAAATAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| 3UTR CAA 90 bp | CTGTTTCAGGCATACCATCTGGGTCTCTGGTGCCATTATATCTTCTaGAAACACTTCCTCCTCCCCCTCCTGGTCTTGGGTATCTCCTGT | + |
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Preference number: 2 (lower is better) Translates to: LFQAYHLGLWCHYIF*KHFLLPLLVLGISC Trigger: ACAGGAGATACCCAAGACCAGGAGGGGGAGGAGGAAGTGTTTCAAGAAGATATAATGGCACCAGAGACCCAGATGGTATGCCTGAAACAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| 3UTR-3UTR TCA 90 bp | TCCTCCTCCCCCTCCTGGTCTTGGGTATCTCCTGTCCTCCCAATCTCCTGTGTGCTAAACTTCTTTTACTaGACATTAAGGGATACCCAG | + |
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Preference number: 2 (lower is better) Translates to: SSSPSWSWVSPVLPISCVLNFFY*TLRDTQ Trigger: CTGGGTATCCCTTAATGTTCAGTAAAAGAAGTTTAG...CACACAGGAGATTGGGAGGACAGGAGATACCCAAGACCAGGAGGGGGAGGAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| 3UTR-3UTR TCA 90 bp | AATAGCATCATTGGGATATCTTACTTCCTTCTCAGAGGGGACCCTGGCCCAAAGTCTGTACACTGTTCATaGTCAGGCCATGTCTCGGGA | + |
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Preference number: 2 (lower is better) Translates to: NSIIGISYFLLRGDPGPKSVHCS*SGHVSG Trigger: TCCCGAGACATGGCCTGATCATGAACAGTGTACAGA...CTTTGGGCCAGGGTCCCCTCTGAGAAGGAAGTAAGATATCCCAATGATGCTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| 3UTR-3UTR GCA 90 bp | CAGTCAATAGCATCATTGGGATATCTTACTTCCTTCTCAGAGGGGACCCTGGCCTTGTTTGTATGCATGTaGACACACCTAAGAAGAAAT | + |
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Preference number: 2 (lower is better) Translates to: QSIASLGYLTSFSEGTLALFVCM*THLRRN Trigger: ATTTCTTCTTAGGTGTGTGCACATGCATACAAACAA...GGCCAGGGTCCCCTCTGAGAAGGAAGTAAGATATCCCAATGATGCTATTGACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| 3UTR-3UTR GCA 90 bp | AATAGCATCATTGGGATATCTTACTTCCTTCTCAGAGGGGACCCTGGCCCAAAGGTGATATTGTTTGTATaGATGTGCACACACCTAAGA | + |
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Preference number: 2 (lower is better) Translates to: NSIIGISYFLLRGDPGPKVILFV*MCTHLR Trigger: TCTTAGGTGTGTGCACATGCATACAAACAATATCAC...CTTTGGGCCAGGGTCCCCTCTGAGAAGGAAGTAAGATATCCCAATGATGCTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| 3UTR CCA 72 bp | CATTGGGATATCTTACTTCCTTCTCAGAGGGGACCCTaGCCCAAAGAAGAGCCCCTTCCTTATAGACTTGAA | + |
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Preference number: 3 (lower is better) Translates to: HWDILLPSQRGP*PKEEPLPYRLE Trigger: TTCAAGTCTATAAGGAAGGGGCTCTTCTTTGGGCCAGGGTCCCCTCTGAGAAGGAAGTAAGATATCCCAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| 3UTR-3UTR CAA 90 bp | TCAGTCAATAGCATCATTGGGATATCTTACTTCCTTCTCAGAGGGGACCCTGGCCCCTTCCTTATAGACTaGAAATCAGACAGCAGGTCA | + |
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Preference number: 3 (lower is better) Translates to: SVNSIIGISYFLLRGDPGPFLID*KSDSRS Trigger: TGACCTGCTGTCTGATTTCAAGTCTATAAGGAAGGG...GCCAGGGTCCCCTCTGAGAAGGAAGTAAGATATCCCAATGATGCTATTGACTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| 3UTR GCA 72 bp | TCTTGGGTATCTCCTGTCCTCCCAATCTCCTGTGTGTaGACTCACAAAAGGACTCCTTCTATTCGCCATTAT | + |
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Preference number: 3 (lower is better) Translates to: SWVSPVLPISCV*THKRTPSIRHY Trigger: ATAATGGCGAATAGAAGGAGTCCTTTTGTGAGTGCACACACAGGAGATTGGGAGGACAGGAGATACCCAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| 3UTR TCA 72 bp | AGAAGAAATACATTGCTGAGTTCTGTACACTGTTCATaGTCAGGCCATGTCTCGGGAGAGGTTCTGGTGATG | + |
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Preference number: 3 (lower is better) Translates to: RRNTLLSSVHCS*SGHVSGEVLVM Trigger: CATCACCAGAACCTCTCCCGAGACATGGCCTGATCATGAACAGTGTACAGAACTCAGCAATGTATTTCTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| 3UTR-3UTR CAA 90 bp | GACAGCAGGTCATCTCACACCTCAGATAAGATTTCTGTTAGCAAGCCTGGGTCTCTAAGAAGAAATACATaGCTGAGTTCTGTACACTGT | + |
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Preference number: 3 (lower is better) Translates to: DSRSSHTSDKISVSKPGSLRRNT*LSSVHC Trigger: ACAGTGTACAGAACTCAGCAATGTATTTCTTCTTAG...AGACCCAGGCTTGCTAACAGAAATCTTATCTGAGGTGTGAGATGACCTGCTGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| 3UTR TCA 72 bp | CTTCTTTTACTGAACATTAAGGGATACCCAGAACCATaGCCTGAGTACTTCCCAGAAATATTTGTGATATTG | + |
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Preference number: 3 (lower is better) Translates to: LLLLNIKGYPEP*PEYFPEIFVIL Trigger: CAATATCACAAATATTTCTGGGAAGTACTCAGGTCATGGTTCTGGGTATCCCTTAATGTTCAGTAAAAGAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| 3UTR CAA 72 bp | GCATACCATCTGGGTCTCTGGTGCCATTATATCTTCTaGAAACACTTCCTCCTCCCCCTCCTGGTCTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: AYHLGLWCHYIF*KHFLLPLLVLG Trigger: ACCCAAGACCAGGAGGGGGAGGAGGAAGTGTTTCAAGAAGATATAATGGCACCAGAGACCCAGATGGTATGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| 3UTR CAA 72 bp | GACCCTGGCCCAAAGAAGAGCCCCTTCCTTATAGACTaGAAATCAGACAGCAGGTCATCTCACACCTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: DPGPKKSPFLID*KSDSRSSHTSD Trigger: ATCTGAGGTGTGAGATGACCTGCTGTCTGATTTCAAGTCTATAAGGAAGGGGCTCTTCTTTGGGCCAGGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| CDS-3UTR TCA 90 bp | AAGCAAGGTATCACTGAAGGCAGGAGCCATGTCTTCTGCCCAAAACGATGTTCCGATGGAAGCAGTGTATaGTTTGGAAGAGGGAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: KQGITEGRSHVFCPKRCSDGSSV*FGRGSP Trigger: AGGACTCCCTCTTCCAAATCATACACTGCTTCCATC...GGAACATCGTTTTGGGCAGAAGACATGGCTCCTGCCTTCAGTGATACCTTGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| CDS-3UTR GCA 90 bp | AAGCAAGGTATCACTGAAGGCAGGAGCCATGTCTTCTGCCCAAAACGATGTTCCAGTCCTTCACCAGCTTaGCCAAGATGTACAGGAACT | + |
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Preference number: 4 (lower is better) Translates to: KQGITEGRSHVFCPKRCSSPSPA*PRCTGT Trigger: AGTTCCTGTACATCTTGGGCAAGCTGGTGAAGGACT...GGAACATCGTTTTGGGCAGAAGACATGGCTCCTGCCTTCAGTGATACCTTGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| 3UTR CAA 72 bp | CCCGCATGTGCAGTGAATGATCAGTCAATAGCATCATaGGGATATCTTACTTCCTTCTCAGAGGGGACCCTG | + |
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Preference number: 4 (lower is better) Translates to: PACAVNDQSIAS*GYLTSFSEGTL Trigger: CAGGGTCCCCTCTGAGAAGGAAGTAAGATATCCCAATGATGCTATTGACTGATCATTCACTGCACATGCGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| CDS-3UTR CCA 90 bp | ACCTCAGATAAGATTTCTGTTAGCAAGCCTGGGTCTCTTGCATCAGATAAGGGCAAGCAGTGTATGATTTaGAAGAGGGAGTCCTCCACT | + |
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Preference number: 4 (lower is better) Translates to: TSDKISVSKPGSLASDKGKQCMI*KRESST Trigger: AGTGGAGGACTCCCTCTTCCAAATCATACACTGCTT...GCCCTTATCTGATGCAAGAGACCCAGGCTTGCTAACAGAAATCTTATCTGAGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| CDS-3UTR CAA 90 bp | TCAGTCAATAGCATCATTGGGATATCTTACTTCCTTCTCAGAGGGGACCCTGGCAGGGACAAGGTCTCCTaGTCCCCTTCCCGGGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: SVNSIIGISYFLLRGDPGRDKVS*SPSRAA Trigger: TGCTGCCCGGGAAGGGGACAAGGAGACCTTGTCCCT...GCCAGGGTCCCCTCTGAGAAGGAAGTAAGATATCCCAATGATGCTATTGACTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| CDS-3UTR CAA 90 bp | CACACCTCAGATAAGATTTCTGTTAGCAAGCCTGGGTCTCTTGCATCAGATAAGGAAGCAGTGTATGATTaGGAAGAGGGAGTCCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: HTSDKISVSKPGSLASDKEAVYD*EEGVLH Trigger: GTGGAGGACTCCCTCTTCCAAATCATACACTGCTTC...CTTATCTGATGCAAGAGACCCAGGCTTGCTAACAGAAATCTTATCTGAGGTGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| CDS TCA 72 bp | TGTCCTTGTTTTTGTCAGCTGCCCGGAACAGCTCTGTaGTGTAGTATGGCTGCCTGCGGCCCAAGGTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: CPCFCQLPGTAL*CSMAACGPRCP Trigger: TGGACACCTTGGGCCGCAGGCAGCCATACTACATCACAGAGCTGTTCCGGGCAGCTGACAAAAACAAGGACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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| CDS CAA 72 bp | TTCCCGGGCAGCATAGTGATGGAAGCAGTGTATGATTaGGAAGAGGGAGTCCTCCACTGGTGTGTCTGGCAT | + |
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Preference number: 6 (lower is better) Translates to: FPGSIVMEAVYD*EEGVLHWCVWH Trigger: ATGCCAGACACACCAGTGGAGGACTCCCTCTTCCAAATCATACACTGCTTCCATCACTATGCTGCCCGGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079286.4 |
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