Pregenerated sensors for S100A6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001025Ensembl transcript IDs: ENSMUST00000001051.9, ENSMUST00000198128.2, ENSMUST00000200289.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACACTTAAGTCTTCAGGAAGAACTTCTGAAGAAACCAGGGACATCTaGAGCACAGCTGCAGGCCAGGGCCAGGGAGCAGGCTTTGAAGTC | + |
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Preference number: 1 (lower is better) Translates to: TLKSSGRTSEETRDI*STAAGQGQGAGFEV Trigger: GACTTCAAAGCCTGCTCCCTGGCCCTGGCCTGCAGCTGTGCTCCAGATGTCCCTGGTTTCTTCAGAAGTTCTTCCTGAAGACTTAAGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| 3UTR CAA 90 bp | GGGACATCTGGAGCACAGCTGCAGGCCAGGGCCAGGGAGCAGGCTTaGAAGTCTTCCTTCTGTTCTTCCCTGGTGGGCTCCTACAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: GTSGAQLQARAREQA*KSSFCSSLVGSYSS Trigger: GCTGCTGTAGGAGCCCACCAGGGAAGAACAGAAGGAAGACTTCAAAGCCTGCTCCCTGGCCCTGGCCTGCAGCTGTGCTCCAGATGTCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| 3UTR-3UTR GCA 90 bp | TTCCCTTCCATAGCCCACCAGGCAAGGGGAGCCTTGAAGGATGAGATGCGCACACATCTGGAGCACAGCTaGAGGCCAGGGCCAGGGAGC | + |
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Preference number: 2 (lower is better) Translates to: FPSIAHQARGALKDEMRTHLEHS*RPGPGS Trigger: GCTCCCTGGCCCTGGCCTGCAGCTGTGCTCCAGATG...TGTGCGCATCTCATCCTTCAAGGCTCCCCTTGCCTGGTGGGCTATGGAAGGGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| 3UTR-3UTR CCA 90 bp | AGATGCGCACAGGTCCCCCACCTGCAGCTGCTCAAGTCCCGGAATCCAGCAAGCCCAGCTGGGCCTGACTaGTTGGATGTGGGTATGCCA | + |
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Preference number: 2 (lower is better) Translates to: RCAQVPHLQLLKSRNPASPAGPD*LDVGMP Trigger: TGGCATACCCACATCCAACCAGTCAGGCCCAGCTGG...GCTTGCTGGATTCCGGGACTTGAGCAGCTGCAGGTGGGGGACCTGTGCGCATCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| 3UTR-3UTR TCA 90 bp | CCTTCCATAGCCCACCAGGCAAGGGGAGCCTTGAAGGATGAGATGCGCACAGGTCTCTTCCTTCTTCAATaGGCAAGCCAGCTAAAAGCC | + |
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Preference number: 2 (lower is better) Translates to: PSIAHQARGALKDEMRTGLFLLQ*ASQLKA Trigger: GGCTTTTAGCTGGCTTGCTCATTGAAGAAGGAAGAG...ACCTGTGCGCATCTCATCCTTCAAGGCTCCCCTTGCCTGGTGGGCTATGGAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| 3UTR-3UTR GCA 90 bp | CTTAAGTCTTCAGGAAGAACTTCTGAAGAAACCAGGGACATCTGGAGCACAGCTATAGAAGTGCCAGGGTaGCAGCTGGGCCTGACTGGT | + |
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Preference number: 2 (lower is better) Translates to: LKSSGRTSEETRDIWSTAIEVPG*QLGLTG Trigger: ACCAGTCAGGCCCAGCTGGCACCCTGGCACTTCTAT...AGCTGTGCTCCAGATGTCCCTGGTTTCTTCAGAAGTTCTTCCTGAAGACTTAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| 3UTR-3UTR CCA 90 bp | GCCAGACACTTAAGTCTTCAGGAAGAACTTCTGAAGAAACCAGGGACATCTGGACCTTCTGTTCTTCCCTaGTGGGCTCCTACAGCAGCT | + |
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Preference number: 2 (lower is better) Translates to: ARHLSLQEELLKKPGTSGPSVLP*WAPTAA Trigger: AGCTGCTGTAGGAGCCCACCAGGGAAGAACAGAAGG...TCCAGATGTCCCTGGTTTCTTCAGAAGTTCTTCCTGAAGACTTAAGTGTCTGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| 3UTR-3UTR TCA 90 bp | CCAAGGACCTTCCTCTCTGTGTCCCTGGTGATTATGGAAGGCACTCTTCCTTCTTTCAGGAAGAACTTCTaGAGAAACCAGGGACATCTG | + |
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Preference number: 2 (lower is better) Translates to: PRTFLSVSLVIMEGTLPSFRKNF*RNQGHL Trigger: CAGATGTCCCTGGTTTCTTCAGAAGTTCTTCCTGAA...AGAAGGAAGAGTGCCTTCCATAATCACCAGGGACACAGAGAGGAAGGTCCTTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| 3UTR TCA 72 bp | TTCCATAGCCCACCAGGCAAGGGGAGCCTTGAAGGATaGGATGCGCACAGGTCCCCCACCTGCAGCTGCTCA | + |
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Preference number: 3 (lower is better) Translates to: FHSPPGKGSLEG*DAHRSPTCSCS Trigger: TGAGCAGCTGCAGGTGGGGGACCTGTGCGCATCTCATCCTTCAAGGCTCCCCTTGCCTGGTGGGCTATGGAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| 3UTR GCA 72 bp | CAGCTCTGGAATCGAGGATTCATAGAAGTGCCAGGGTaGCAGCTGGGCCTGACTGGTTGGATGTGGGTATGC | + |
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Preference number: 3 (lower is better) Translates to: QLWNRGFIEVPG*QLGLTGWMWVC Trigger: GCATACCCACATCCAACCAGTCAGGCCCAGCTGGCACCCTGGCACTTCTATGAATCCTCGATTCCAGAGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| 3UTR GCA 72 bp | TGCAGCTGCTCAAGTCCCGGAATCCAGCAAGCTTCCTaGCTAAGACCCAAGGACCTTCCTCTCTGTGTCCCT | + |
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Preference number: 3 (lower is better) Translates to: CSCSSPGIQQAS*LRPKDLPLCVP Trigger: AGGGACACAGAGAGGAAGGTCCTTGGGTCTTAGGCAGGAAGCTTGCTGGATTCCGGGACTTGAGCAGCTGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| 3UTR CCA 72 bp | CTTCTGTTCTTCCCTGGTGGGCTCCTACAGCAGCTCTaGAATCGAGGATTCATAGAAGTGCCAGGGTGCCAG | + |
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Preference number: 3 (lower is better) Translates to: LLFFPGGLLQQL*NRGFIEVPGCQ Trigger: CTGGCACCCTGGCACTTCTATGAATCCTCGATTCCAGAGCTGCTGTAGGAGCCCACCAGGGAAGAACAGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| 3UTR-3UTR CAA 90 bp | CTTAAGTCTTCAGGAAGAACTTCTGAAGAAACCAGGGACATCTGGAGCACAGCTGTCAAACCACTGGATTaGACCGAGAGAGGCCCCCGG | + |
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Preference number: 3 (lower is better) Translates to: LKSSGRTSEETRDIWSTAVKPLD*TERGPR Trigger: CCGGGGGCCTCTCTCGGTCAAATCCAGTGGTTTGAC...AGCTGTGCTCCAGATGTCCCTGGTTTCTTCAGAAGTTCTTCCTGAAGACTTAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| 3UTR TCA 72 bp | CGAAATATTTATTGTATAACTACCCACCACTGGATTTaGCCGAGAGAGGCCCCCGGAAGTCATCTCAACGGT | + |
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Preference number: 3 (lower is better) Translates to: RNIYCITTHHWI*PREAPGSHLNG Trigger: ACCGTTGAGATGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTAGTTATACAATAAATATTTCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS-3UTR CCA 90 bp | AATCCAGCAAGCTTCCTGCCTAAGACCCAAGGACCTTCCTCTCTGTGTCCCTGGCCACGAGAAGGCCAATaGCCTGATCCAGAGGGCATG | + |
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Preference number: 4 (lower is better) Translates to: NPASFLPKTQGPSSLCPWPREGQ*PDPEGM Trigger: CATGCCCTCTGGATCAGGCCATTGGCCTTCTCGTGG...CCAGGGACACAGAGAGGAAGGTCCTTGGGTCTTAGGCAGGAAGCTTGCTGGATT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| CDS-3UTR CCA 90 bp | TACCCACCACTGGATTTGACCGAGAGAGGCCCCCGGAAGTCATCTCAACGGTCCTTGCCAGAGTACTTGTaGAAGATGGCCACGAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: YPPLDLTERGPRKSSQRSLPEYL*KMATRR Trigger: CCTTCTCGTGGCCATCTTCCACAAGTACTCTGGCAA...GGACCGTTGAGATGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS-3UTR CCA 90 bp | TACCCACCACTGGATTTGACCGAGAGAGGCCCCCGGAAGTCATCTCAACGGTCCATGGTGAGCTCCTTCTaGATCAACTCCTTCAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: YPPLDLTERGPRKSSQRSMVSSF*INSFSS Trigger: GGAGCTGAAGGAGTTGATCCAGAAGGAGCTCACCAT...GGACCGTTGAGATGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS-3UTR TCA 90 bp | GTCTTCCTTCTGTTCTTCCCTGGTGGGCTCCTACAGCAGCTCTGGAATCGAGGAGCTTGGAGCCAATGGTaGGCTCCTTCTGGATCAACT | + |
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Preference number: 4 (lower is better) Translates to: VFLLFFPGGLLQQLWNRGAWSQW*APSGST Trigger: AGTTGATCCAGAAGGAGCTCACCATTGGCTCCAAGC...TCCTCGATTCCAGAGCTGCTGTAGGAGCCCACCAGGGAAGAACAGAAGGAAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| CDS-3UTR CCA 90 bp | TATAACTACCCACCACTGGATTTGACCGAGAGAGGCCCCCGGAAGTCATCTCAACCACGAGAAGGCCAATaGCCTGATCCAGAGGGCATG | + |
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Preference number: 4 (lower is better) Translates to: YNYPPLDLTERGPRKSSQPREGQ*PDPEGM Trigger: CATGCCCTCTGGATCAGGCCATTGGCCTTCTCGTGG...TTGAGATGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTAGTTATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS-3UTR GCA 90 bp | CTACCCACCACTGGATTTGACCGAGAGAGGCCCCCGGAAGTCATCTCAACGGTCATCATCCATCAGCCTTaGAATTTCAGCATCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: LPTTGFDRERPPEVISTVIIHQP*NFSILQ Trigger: CTGCAGGATGCTGAAATTGCAAGGCTGATGGATGAT...GACCGTTGAGATGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS-3UTR GCA 90 bp | TACCCACCACTGGATTTGACCGAGAGAGGCCCCCGGAAGTCATCTCAACGGTCCATCATCCATCAGCCTTaGAATTTCAGCATCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: YPPLDLTERGPRKSSQRSIIHQP*NFSILQ Trigger: CTGCAGGATGCTGAAATTGCAAGGCTGATGGATGAT...GGACCGTTGAGATGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS-3UTR CCA 90 bp | AAATATTTATTGTATAACTACCCACCACTGGATTTGACCGAGAGAGGCCCCCGGCCACGAGAAGGCCAATaGCCTGATCCAGAGGGCATG | + |
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Preference number: 4 (lower is better) Translates to: KYLLYNYPPLDLTERGPRPREGQ*PDPEGM Trigger: CATGCCCTCTGGATCAGGCCATTGGCCTTCTCGTGG...CCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTAGTTATACAATAAATATTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS-3UTR CCA 90 bp | TTGTATAACTACCCACCACTGGATTTGACCGAGAGAGGCCCCCGGAAGTCATCTAGTACTTGTGGAAGATaGCCACGAGAAGGCCAATGG | + |
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Preference number: 4 (lower is better) Translates to: LYNYPPLDLTERGPRKSSSTCGR*PREGQW Trigger: CCATTGGCCTTCTCGTGGCCATCTTCCACAAGTACT...AGATGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTAGTTATACAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS-3UTR CCA 90 bp | TATAACTACCCACCACTGGATTTGACCGAGAGAGGCCCCCGGAAGTCATCTCAATTGCCAGAGTACTTGTaGAAGATGGCCACGAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: YNYPPLDLTERGPRKSSQLPEYL*KMATRR Trigger: CCTTCTCGTGGCCATCTTCCACAAGTACTCTGGCAA...TTGAGATGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTAGTTATA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| 3UTR CAA 72 bp | AGCATCAATCAGGGAAAATGTGTCAAACCACTGGATTaGACCGAGAGAGGCCCCCGGAAGTCATCTCAACGG | + |
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Preference number: 4 (lower is better) Translates to: SINQGKCVKPLD*TERGPRKSSQR Trigger: CCGTTGAGATGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTTTGACACATTTTCCCTGATTGATGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| CDS-3UTR CCA 90 bp | TTATTGTATAACTACCCACCACTGGATTTGACCGAGAGAGGCCCCCGGAAGTCAAGTACTTGTGGAAGATaGCCACGAGAAGGCCAATGG | + |
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Preference number: 4 (lower is better) Translates to: LLYNYPPLDLTERGPRKSSTCGR*PREGQW Trigger: CCATTGGCCTTCTCGTGGCCATCTTCCACAAGTACT...TGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTAGTTATACAATAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS-3UTR GCA 90 bp | TTGCAGAAGAAAATTCCCTTCCATAGCCCACCAGGCAAGGGGAGCCTTGAAGGAATCATCCATCAGCCTTaGAATTTCAGCATCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: LQKKIPFHSPPGKGSLEGIIHQP*NFSILQ Trigger: CTGCAGGATGCTGAAATTGCAAGGCTGATGGATGAT...TCCTTCAAGGCTCCCCTTGCCTGGTGGGCTATGGAAGGGAATTTTCTTCTGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| CDS-3UTR CCA 90 bp | CCTCTCTGTGTCCCTGGTGATTATGGAAGGCACTCTTCCTTCTTCAATGAGCAAATGGTGAGCTCCTTCTaGATCAACTCCTTCAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: PLCVPGDYGRHSSFFNEQMVSSF*INSFSS Trigger: GGAGCTGAAGGAGTTGATCCAGAAGGAGCTCACCAT...TTGCTCATTGAAGAAGGAAGAGTGCCTTCCATAATCACCAGGGACACAGAGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| CDS-3UTR TCA 90 bp | ACGAAATATTTATTGTATAACTACCCACCACTGGATTTGACCGAGAGAGGCCCCGCTTGGAGCCAATGGTaGGCTCCTTCTGGATCAACT | + |
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Preference number: 4 (lower is better) Translates to: TKYLLYNYPPLDLTERGPAWSQW*APSGST Trigger: AGTTGATCCAGAAGGAGCTCACCATTGGCTCCAAGC...GGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTAGTTATACAATAAATATTTCGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| 3UTR CAA 72 bp | ACGAAATATTTATTGTATAACTACCCACCACTGGATTaGACCGAGAGAGGCCCCCGGAAGTCATCTCAACGG | + |
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Preference number: 4 (lower is better) Translates to: TKYLLYNYPPLD*TERGPRKSSQR Trigger: CCGTTGAGATGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTAGTTATACAATAAATATTTCGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS-3UTR TCA 90 bp | AAAACGAAATATTTATTGTATAACTACCCACCACTGGATTTGACCGAGAGAGGCGCTTGGAGCCAATGGTaGGCTCCTTCTGGATCAACT | + |
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Preference number: 4 (lower is better) Translates to: KTKYLLYNYPPLDLTERGAWSQW*APSGST Trigger: AGTTGATCCAGAAGGAGCTCACCATTGGCTCCAAGC...GCCTCTCTCGGTCAAATCCAGTGGTGGGTAGTTATACAATAAATATTTCGTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS-3UTR CCA 90 bp | TGTGGGTATGCCAATAAGGTGAAAAAGATAGCATCAATCAGGGAAAATGTGTCATTGCCAGAGTACTTGTaGAAGATGGCCACGAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: CGYANKVKKIASIRENVSLPEYL*KMATRR Trigger: CCTTCTCGTGGCCATCTTCCACAAGTACTCTGGCAA...TGACACATTTTCCCTGATTGATGCTATCTTTTTCACCTTATTGGCATACCCACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| CDS-3UTR CAA 90 bp | TACCCACCACTGGATTTGACCGAGAGAGGCCCCCGGAAGTCATCTCAACGGTCCTCAGCATCCTGCAGCTaGGAGCCAATGGTGAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: YPPLDLTERGPRKSSQRSSASCS*EPMVSS Trigger: GGAGCTCACCATTGGCTCCAAGCTGCAGGATGCTGA...GGACCGTTGAGATGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS-3UTR CAA 90 bp | CTACCCACCACTGGATTTGACCGAGAGAGGCCCCCGGAAGTCATCTCAACGGTCTTGCTCAGGGTGTGCTaGTCACCTTCCTTGCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: LPTTGFDRERPPEVISTVLLRVC*SPSLPE Trigger: CTCTGGCAAGGAAGGTGACAAGCACACCCTGAGCAA...GACCGTTGAGATGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS-3UTR CAA 90 bp | TACCCACCACTGGATTTGACCGAGAGAGGCCCCCGGAAGTCATCTCAACGGTCCTCCTTGCCAGAGTACTaGTGGAAGATGGCCACGAGA | + |
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Preference number: 5 (lower is better) Translates to: YPPLDLTERGPRKSSQRSSLPEY*WKMATR Trigger: TCTCGTGGCCATCTTCCACAAGTACTCTGGCAAGGA...GGACCGTTGAGATGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS-3UTR CAA 90 bp | GTCTTCCTTCTGTTCTTCCCTGGTGGGCTCCTACAGCAGCTCTGGAATCGAGGATCAGCATCCTGCAGCTaGGAGCCAATGGTGAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: VFLLFFPGGLLQQLWNRGSASCS*EPMVSS Trigger: GGAGCTCACCATTGGCTCCAAGCTGCAGGATGCTGA...TCCTCGATTCCAGAGCTGCTGTAGGAGCCCACCAGGGAAGAACAGAAGGAAGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| CDS-3UTR CAA 90 bp | AGATGCGCACAGGTCCCCCACCTGCAGCTGCTCAAGTCCCGGAATCCAGCAAGCGATCATCCATCAGCCTaGCAATTTCAGCATCCTGCA | + |
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Preference number: 5 (lower is better) Translates to: RCAQVPHLQLLKSRNPASDHPSA*QFQHPA Trigger: TGCAGGATGCTGAAATTGCAAGGCTGATGGATGATC...GCTTGCTGGATTCCGGGACTTGAGCAGCTGCAGGTGGGGGACCTGTGCGCATCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| CDS-3UTR CAA 90 bp | TTCCCTTCCATAGCCCACCAGGCAAGGGGAGCCTTGAAGGATGAGATGCGCACATCCTTGCCAGAGTACTaGTGGAAGATGGCCACGAGA | + |
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Preference number: 5 (lower is better) Translates to: FPSIAHQARGALKDEMRTSLPEY*WKMATR Trigger: TCTCGTGGCCATCTTCCACAAGTACTCTGGCAAGGA...TGTGCGCATCTCATCCTTCAAGGCTCCCCTTGCCTGGTGGGCTATGGAAGGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200289.2 |
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| CDS-3UTR CAA 90 bp | CTACCCACCACTGGATTTGACCGAGAGAGGCCCCCGGAAGTCATCTCAACGGTCGATCATCCATCAGCCTaGCAATTTCAGCATCCTGCA | + |
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Preference number: 5 (lower is better) Translates to: LPTTGFDRERPPEVISTVDHPSA*QFQHPA Trigger: TGCAGGATGCTGAAATTGCAAGGCTGATGGATGATC...GACCGTTGAGATGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS TCA 90 bp | GCCAAGGCCCCCAGGAAGGCGACATACTCCTGGAAGTTTACTTCCTaGTCCTTGTTACGGTCCAGATCATCCATCAGCCTTGCAATTTCA | + |
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Preference number: 5 (lower is better) Translates to: AKAPRKATYSWKFTS*SLLRSRSSISLAIS Trigger: TGAAATTGCAAGGCTGATGGATGATCTGGACCGTAACAAGGATCAGGAAGTAAACTTCCAGGAGTATGTCGCCTTCCTGGGGGCCTTGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 ENSMUST00000200289.2 |
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| CDS-3UTR CAA 90 bp | TTATTGTATAACTACCCACCACTGGATTTGACCGAGAGAGGCCCCCGGAAGTCATCCTTGCCAGAGTACTaGTGGAAGATGGCCACGAGA | + |
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Preference number: 5 (lower is better) Translates to: LLYNYPPLDLTERGPRKSSLPEY*WKMATR Trigger: TCTCGTGGCCATCTTCCACAAGTACTCTGGCAAGGA...TGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTAGTTATACAATAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS-3UTR CAA 90 bp | TATTTATTGTATAACTACCCACCACTGGATTTGACCGAGAGAGGCCCCCGGAAGTTGCTCAGGGTGTGCTaGTCACCTTCCTTGCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: YLLYNYPPLDLTERGPRKLLRVC*SPSLPE Trigger: CTCTGGCAAGGAAGGTGACAAGCACACCCTGAGCAA...CTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTAGTTATACAATAAATA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS-3UTR CAA 90 bp | TTGTATAACTACCCACCACTGGATTTGACCGAGAGAGGCCCCCGGAAGTCATCTGATCATCCATCAGCCTaGCAATTTCAGCATCCTGCA | + |
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Preference number: 5 (lower is better) Translates to: LYNYPPLDLTERGPRKSSDHPSA*QFQHPA Trigger: TGCAGGATGCTGAAATTGCAAGGCTGATGGATGATC...AGATGACTTCCGGGGGCCTCTCTCGGTCAAATCCAGTGGTGGGTAGTTATACAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 |
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| CDS GCA 90 bp | GTTTACTTCCTGATCCTTGTTACGGTCCAGATCATCCATCAGCCTTaGAATTTCAGCATCCTGCAGCTTGGAGCCAATGGTGAGCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: VYFLILVTVQIIHQP*NFSILQLGANGELL Trigger: AAGGAGCTCACCATTGGCTCCAAGCTGCAGGATGCTGAAATTGCAAGGCTGATGGATGATCTGGACCGTAACAAGGATCAGGAAGTAAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 ENSMUST00000200289.2 |
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| CDS CAA 72 bp | CCTGATCCTTGTTACGGTCCAGATCATCCATCAGCCTaGCAATTTCAGCATCCTGCAGCTTGGAGCCAATGG | + |
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Preference number: 6 (lower is better) Translates to: PDPCYGPDHPSA*QFQHPAAWSQW Trigger: CCATTGGCTCCAAGCTGCAGGATGCTGAAATTGCAAGGCTGATGGATGATCTGGACCGTAACAAGGATCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 ENSMUST00000200289.2 |
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| CDS TCA 72 bp | CCCAGGAAGGCGACATACTCCTGGAAGTTTACTTCCTaGTCCTTGTTACGGTCCAGATCATCCATCAGCCTT | + |
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Preference number: 6 (lower is better) Translates to: PRKATYSWKFTS*SLLRSRSSISL Trigger: AAGGCTGATGGATGATCTGGACCGTAACAAGGATCAGGAAGTAAACTTCCAGGAGTATGTCGCCTTCCTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 ENSMUST00000200289.2 |
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| CDS GCA 72 bp | CTGATCCTTGTTACGGTCCAGATCATCCATCAGCCTTaGAATTTCAGCATCCTGCAGCTTGGAGCCAATGGT | + |
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Preference number: 6 (lower is better) Translates to: LILVTVQIIHQP*NFSILQLGANG Trigger: ACCATTGGCTCCAAGCTGCAGGATGCTGAAATTGCAAGGCTGATGGATGATCTGGACCGTAACAAGGATCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000001051.9 ENSMUST00000198128.2 ENSMUST00000200289.2 |
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