Pregenerated sensors for S100A4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000001020

Ensembl transcript IDs: ENSMUST00000001046.7

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 72 bp	TGTGCACATGTGCGAAGAAGCCAGAGTAAGGCACTATaGTCACAGCCAACAGGGAAGATCCCCCACTGGCAA	+
Preference number: 3 (lower is better) Translates to: CAHVRRSQSKAL*SQPTGKIPHWQ Trigger: TTGCCAGTGGGGGATCTTCCCTGTTGGCTGTGAGCATAGTGCCTTACTCTGGCTTCTTCGCACATGTGCACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR TCA 90 bp	AGGCACTATGCTCACAGCCAACAGGGAAGATCCCCCACTGGCAAACTACACCCCTGGTCAGTAGCTCCTTaGGCTCTGTCTTGTTCAGCT	+
Preference number: 4 (lower is better) Translates to: RHYAHSQQGRSPTGKLHPWSVAP*ALSCSA Trigger: AGCTGAACAAGACAGAGCTCAAGGAGCTACTGACCA...GGGGTGTAGTTTGCCAGTGGGGGATCTTCCCTGTTGGCTGTGAGCATAGTGCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR TCA 90 bp	GGCACTATGCTCACAGCCAACAGGGAAGATCCCCCACTGGCAAACTACACCCCACTGTCTTGTTCAGCTTaGACTTGTCACCCTCTTTGC	+
Preference number: 4 (lower is better) Translates to: GTMLTANREDPPLANYTPLSCSA*TCHPLC Trigger: GCAAAGAGGGTGACAAGTTCAAGCTGAACAAGACAG...TGGGGTGTAGTTTGCCAGTGGGGGATCTTCCCTGTTGGCTGTGAGCATAGTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR TCA 90 bp	ATGCTCACAGCCAACAGGGAAGATCCCCCACTGGCAAACTACACCCCAACACTTGTCACCCTCTTTGCCTaGGTATTTGTGGAAGGTGGA	+
Preference number: 4 (lower is better) Translates to: MLTANREDPPLANYTPTLVTLFA*VFVEGG Trigger: TCCACCTTCCACAAATACTCAGGCAAAGAGGGTGAC...AAGTGTTGGGGTGTAGTTTGCCAGTGGGGGATCTTCCCTGTTGGCTGTGAGCAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR GCA 90 bp	GGCACTATGCTCACAGCCAACAGGGAAGATCCCCCACTGGCAAACTACACCCCATGTTGCTGTCCAAGTTaGTCATCACCTTCTGGAATG	+
Preference number: 4 (lower is better) Translates to: GTMLTANREDPPLANYTPCCCPS*SSPSGM Trigger: CATTCCAGAAGGTGATGAGCAACTTGGACAGCAACA...TGGGGTGTAGTTTGCCAGTGGGGGATCTTCCCTGTTGGCTGTGAGCATAGTGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR GCA 90 bp	GGCACTATGCTCACAGCCAACAGGGAAGATCCCCCACTGGCAAACTACACCCCACTTCATTGTCCCTGTTaGTGTCCAAGTTGCTCATCA	+
Preference number: 4 (lower is better) Translates to: GTMLTANREDPPLANYTPLHCPC*CPSCSS Trigger: TGATGAGCAACTTGGACAGCAACAGGGACAATGAAG...TGGGGTGTAGTTTGCCAGTGGGGGATCTTCCCTGTTGGCTGTGAGCATAGTGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR CCA 90 bp	GGCACTATGCTCACAGCCAACAGGGAAGATCCCCCACTGGCAAACTACACCCCATTGCCTGAGTATTTGTaGAAGGTGGACACAATTACA	+
Preference number: 4 (lower is better) Translates to: GTMLTANREDPPLANYTPLPEYL*KVDTIT Trigger: TGTAATTGTGTCCACCTTCCACAAATACTCAGGCAA...TGGGGTGTAGTTTGCCAGTGGGGGATCTTCCCTGTTGGCTGTGAGCATAGTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR CCA 90 bp	ACTATGCTCACAGCCAACAGGGAAGATCCCCCACTGGCAAACTACACCCCAACATTGCTCATCACCTTCTaGAATGCAGCTTCATCTGTC	+
Preference number: 4 (lower is better) Translates to: TMLTANREDPPLANYTPTLLITF*NAASSV Trigger: GACAGATGAAGCTGCATTCCAGAAGGTGATGAGCAA...TGTTGGGGTGTAGTTTGCCAGTGGGGGATCTTCCCTGTTGGCTGTGAGCATAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR GCA 90 bp	CTCACAGCCAACAGGGAAGATCCCCCACTGGCAAACTACACCCCAACACTTCATCATCACCTTCTGGAATaGAGCTTCATCTGTCCTTTT	+
Preference number: 4 (lower is better) Translates to: LTANREDPPLANYTPTLHHHLLE*SFICPF Trigger: AAAAGGACAGATGAAGCTGCATTCCAGAAGGTGATG...ATGAAGTGTTGGGGTGTAGTTTGCCAGTGGGGGATCTTCCCTGTTGGCTGTGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR CCA 90 bp	ATGCTCACAGCCAACAGGGAAGATCCCCCACTGGCAAACTACACCCCAACACTTAGTATTTGTGGAAGGTaGACACAATTACATCCAGGG	+
Preference number: 4 (lower is better) Translates to: MLTANREDPPLANYTPTLSICGR*TQLHPG Trigger: CCCTGGATGTAATTGTGTCCACCTTCCACAAATACT...AAGTGTTGGGGTGTAGTTTGCCAGTGGGGGATCTTCCCTGTTGGCTGTGAGCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR CCA 90 bp	ACAGCCAACAGGGAAGATCCCCCACTGGCAAACTACACCCCAACACTTCATCTGAAGACACAGTACTCCTaGAAGTCAACTTCATTGTCC	+
Preference number: 4 (lower is better) Translates to: TANREDPPLANYTPTLHLKTQYS*KSTSLS Trigger: GGACAATGAAGTTGACTTCCAGGAGTACTGTGTCTT...CAGATGAAGTGTTGGGGTGTAGTTTGCCAGTGGGGGATCTTCCCTGTTGGCTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR CAA 90 bp	CAACAGGGAAGATCCCCCACTGGCAAACTACACCCCAACACTTCATCTGAGGAGCTGGTCAGTAGCTCCTaGAGCTCTGTCTTGTTCAGC	+
Preference number: 5 (lower is better) Translates to: QQGRSPTGKLHPNTSSEELVSSS*SSVLFS Trigger: GCTGAACAAGACAGAGCTCAAGGAGCTACTGACCAG...CTCCTCAGATGAAGTGTTGGGGTGTAGTTTGCCAGTGGGGGATCTTCCCTGTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR CAA 90 bp	ATGCTCACAGCCAACAGGGAAGATCCCCCACTGGCAAACTACACCCCAACACTTCTGTTGCTGTCCAAGTaGCTCATCACCTTCTGGAAT	+
Preference number: 5 (lower is better) Translates to: MLTANREDPPLANYTPTLLLLSK*LITFWN Trigger: ATTCCAGAAGGTGATGAGCAACTTGGACAGCAACAG...AAGTGTTGGGGTGTAGTTTGCCAGTGGGGGATCTTCCCTGTTGGCTGTGAGCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR CAA 90 bp	CAACAGGGAAGATCCCCCACTGGCAAACTACACCCCAACACTTCATCTGAGGAGTGGAAGTCAACTTCATaGTCCCTGTTGCTGTCCAAG	+
Preference number: 5 (lower is better) Translates to: QQGRSPTGKLHPNTSSEEWKSTS*SLLLSK Trigger: CTTGGACAGCAACAGGGACAATGAAGTTGACTTCCA...CTCCTCAGATGAAGTGTTGGGGTGTAGTTTGCCAGTGGGGGATCTTCCCTGTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR CAA 90 bp	ATGCTCACAGCCAACAGGGAAGATCCCCCACTGGCAAACTACACCCCAACACTTTCCTTGAGCTCTGTCTaGTTCAGCTTGAACTTGTCA	+
Preference number: 5 (lower is better) Translates to: MLTANREDPPLANYTPTLSLSSV*FSLNLS Trigger: TGACAAGTTCAAGCTGAACAAGACAGAGCTCAAGGA...AAGTGTTGGGGTGTAGTTTGCCAGTGGGGGATCTTCCCTGTTGGCTGTGAGCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR CAA 90 bp	AGAGTAAGGCACTATGCTCACAGCCAACAGGGAAGATCCCCCACTGGCAAACTAACTTCATTGTCCCTGTaGCTGTCCAAGTTGCTCATC	+
Preference number: 5 (lower is better) Translates to: RVRHYAHSQQGRSPTGKLTSLSL*LSKLLI Trigger: GATGAGCAACTTGGACAGCAACAGGGACAATGAAGT...TAGTTTGCCAGTGGGGGATCTTCCCTGTTGGCTGTGAGCATAGTGCCTTACTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR CAA 90 bp	CTCACAGCCAACAGGGAAGATCCCCCACTGGCAAACTACACCCCAACACTTCATCCCTCAAAGAATTCATaGCACATCATGGCAATGCAG	+
Preference number: 5 (lower is better) Translates to: LTANREDPPLANYTPTLHPSKNS*HIMAMQ Trigger: CTGCATTGCCATGATGTGCAATGAATTCTTTGAGGG...ATGAAGTGTTGGGGTGTAGTTTGCCAGTGGGGGATCTTCCCTGTTGGCTGTGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR CAA 90 bp	ACTATGCTCACAGCCAACAGGGAAGATCCCCCACTGGCAAACTACACCCCAACATCTTTGCCTGAGTATTaGTGGAAGGTGGACACAATT	+
Preference number: 5 (lower is better) Translates to: TMLTANREDPPLANYTPTSLPEY*WKVDTI Trigger: AATTGTGTCCACCTTCCACAAATACTCAGGCAAAGA...TGTTGGGGTGTAGTTTGCCAGTGGGGGATCTTCCCTGTTGGCTGTGAGCATAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001046.7
CDS-3UTR CAA 90 bp	AGAGTAAGGCACTATGCTCACAGCCAACAGGGAAGATCCCCCACTGGCAAACTATCTGTCTTGTTCAGCTaGAACTTGTCACCCTCTTTG	+
Preference number: 5 (lower is better) Translates to: RVRHYAHSQQGRSPTGKLSVLFS*NLSPSL Trigger: CAAAGAGGGTGACAAGTTCAAGCTGAACAAGACAGA...TAGTTTGCCAGTGGGGGATCTTCCCTGTTGGCTGTGAGCATAGTGCCTTACTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001046.7